AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31882

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31882.t1 MTR_6g061070 70.332 482 122 7 8 482 3 470 0.0 665
MS.gene31882.t1 MTR_1g035520 56.494 308 110 8 38 332 87 383 3.95e-95 293
MS.gene31882.t1 MTR_1g035520 82.822 163 28 0 320 482 221 383 7.23e-91 282
MS.gene31882.t1 MTR_1g035500 61.881 202 53 3 1 200 1 180 2.45e-82 253
MS.gene31882.t1 MTR_1g033740 61.500 200 53 3 1 200 1 176 5.85e-81 249
MS.gene31882.t1 MTR_1g035480 61.658 193 49 2 8 200 2 169 2.06e-77 240
MS.gene31882.t1 MTR_1g035620 35.205 463 233 14 23 481 9 408 2.46e-64 214
MS.gene31882.t1 MTR_1g035570 34.354 457 218 13 32 482 14 394 5.80e-64 213
MS.gene31882.t1 MTR_1g035640 32.790 491 250 20 32 482 14 464 2.65e-55 191
MS.gene31882.t1 MTR_1g035470 59.006 161 38 3 38 198 1 133 2.81e-53 176
MS.gene31882.t1 MTR_1g035510 53.846 169 54 2 38 206 1 145 3.28e-53 179
MS.gene31882.t1 MTR_1g035490 36.513 304 158 13 181 482 58 328 2.17e-42 154
MS.gene31882.t1 MTR_1g050845 31.075 428 219 12 23 447 9 363 3.96e-42 160
MS.gene31882.t1 MTR_5g044670 28.771 358 210 11 8 355 5 327 8.36e-40 146
MS.gene31882.t1 MTR_3g098790 28.923 325 195 8 17 335 7 301 3.08e-35 134
MS.gene31882.t1 MTR_7g050720 30.061 326 203 8 15 332 2 310 4.71e-32 125
MS.gene31882.t1 MTR_1g108780 25.647 464 304 13 39 481 13 456 6.80e-31 124
MS.gene31882.t1 MTR_7g050710 28.440 327 204 8 16 335 6 309 1.25e-30 121
MS.gene31882.t1 MTR_6g043890 28.981 314 183 11 20 323 12 295 7.67e-30 119
MS.gene31882.t1 MTR_8g103940 24.167 480 322 14 21 481 37 493 8.66e-30 122
MS.gene31882.t1 MTR_4g119990 28.070 342 203 13 18 344 10 323 1.55e-28 116
MS.gene31882.t1 MTR_7g050580 27.160 324 193 7 17 335 7 292 2.38e-28 114
MS.gene31882.t1 MTR_1g035650 31.878 229 114 6 23 246 9 200 3.36e-27 108
MS.gene31882.t1 MTR_3g061310 26.852 324 193 10 13 332 2 285 1.46e-26 109
MS.gene31882.t1 MTR_3g061350 29.073 313 177 12 23 331 12 283 5.31e-26 107
MS.gene31882.t1 MTR_3g061340 26.154 325 183 12 13 332 2 274 4.60e-23 99.0
MS.gene31882.t1 MTR_3g061370 27.950 322 183 12 16 331 2 280 5.14e-23 99.0
MS.gene31882.t1 MTR_7g050560 26.048 334 184 10 17 335 7 292 1.03e-22 99.0
MS.gene31882.t1 MTR_1g035460 26.101 318 208 10 38 346 1 300 1.25e-21 97.1
MS.gene31882.t1 MTR_7g050590 25.574 305 197 7 38 335 1 282 9.06e-21 92.8
MS.gene31882.t1 MTR_3g061320 26.852 324 187 15 13 332 2 279 9.59e-21 92.4
MS.gene31882.t1 MTR_1g035540 36.364 154 46 4 255 408 2 103 1.32e-19 85.5
MS.gene31882.t1 MTR_1g021360 27.211 294 174 12 35 319 194 456 1.03e-17 85.9
MS.gene31882.t1 MTR_1g021330 21.752 331 229 9 16 319 19 346 4.72e-17 83.2
MS.gene31882.t1 MTR_1g021400 23.197 319 221 10 19 319 26 338 3.30e-16 80.5
MS.gene31882.t1 MTR_1g021440 23.494 332 218 11 19 319 19 345 5.56e-16 80.1
MS.gene31882.t1 MTR_3g061330 29.098 244 134 9 13 253 2 209 7.00e-16 77.8
MS.gene31882.t1 MTR_1g035440 39.806 103 58 2 20 118 12 114 3.14e-15 75.9
MS.gene31882.t1 MTR_3g061290 34.507 142 78 5 21 159 10 139 1.19e-14 73.2
MS.gene31882.t1 MTR_3g061220 34.959 123 68 3 14 136 3 113 3.16e-14 69.3
MS.gene31882.t1 MTR_7g050640 40.426 94 53 2 22 112 12 105 5.47e-14 68.9
MS.gene31882.t1 MTR_1g021410 25.153 326 206 13 19 319 19 331 2.32e-13 71.6
MS.gene31882.t1 MTR_3g061300 31.481 108 66 3 225 331 22 122 1.61e-12 65.1
MS.gene31882.t1 MTR_5g070440 29.524 105 71 2 17 118 15 119 8.60e-11 63.2
MS.gene31882.t1 MTR_1g034210 22.006 359 223 12 23 332 7 357 9.58e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31882.t1 AT3G18990 25.150 334 218 8 23 330 6 333 1.29e-25 107
MS.gene31882.t1 AT3G18990 25.150 334 218 8 23 330 6 333 1.60e-25 108
MS.gene31882.t1 AT4G33280 25.926 324 176 17 34 332 34 318 5.65e-12 67.4

Find 83 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATATGCGGGCAATTT+TGG 0.164513 1.2:-20461228 MS.gene31882:CDS
TTTGGAAGTTTAAGAGATAT+TGG 0.253059 1.2:+20464270 None:intergenic
TCCCATTCGAAAATTTATTC+TGG 0.254734 1.2:+20462895 None:intergenic
ATGGTATTTGGCTTCAAAAT+TGG 0.298035 1.2:-20464209 MS.gene31882:CDS
CTATCACCTTCAACGTGATA+TGG 0.333665 1.2:+20463429 None:intergenic
AGTTTAAGAGATATTGGATT+TGG 0.342240 1.2:+20464276 None:intergenic
CTCCGGGCCTGGTTCCTTTG+TGG 0.344484 1.2:+20462763 None:intergenic
TGCAACGCAGTGATGGTATT+TGG 0.352991 1.2:-20464221 MS.gene31882:CDS
AAGAAGCATGGTATATTTAG+TGG 0.374789 1.2:-20460901 MS.gene31882:CDS
TATAATGAACATCTCGACTA+TGG 0.388378 1.2:-20460826 MS.gene31882:CDS
GACAACACCCATAAAAGATA+TGG 0.388901 1.2:-20461247 MS.gene31882:CDS
CCTTGAAACTTCTCCGGGCC+TGG 0.411612 1.2:+20462752 None:intergenic
TATCTCTCTACAAAATTCCT+TGG 0.444892 1.2:+20464312 None:intergenic
GGTCAGTGTGCAAAATGAAT+TGG 0.447786 1.2:-20464245 MS.gene31882:CDS
AGCAATGCCATTTGAGTTGG+CGG 0.456539 1.2:+20463930 None:intergenic
ATATCTCTTAAACTTCCAAA+TGG 0.460593 1.2:-20464267 MS.gene31882:CDS
GCAATACCTTGAAACTTCTC+CGG 0.461040 1.2:+20462746 None:intergenic
TGCTTCTTCAACAGCTCACT+TGG 0.461685 1.2:+20460916 None:intergenic
AAGAGAACCGCCAACTCAAA+TGG 0.462516 1.2:-20463937 MS.gene31882:CDS
GAATTTACATGAGATGTTCA+AGG 0.464486 1.2:-20461057 MS.gene31882:CDS
GACTATGGTTGGTTCACTAA+AGG 0.474605 1.2:-20460811 MS.gene31882:CDS
TGAGAGTAGGGGAAGGAACA+TGG 0.483751 1.2:-20460864 MS.gene31882:CDS
CAAGTTGTTTGTGTTGAAGC+TGG 0.487749 1.2:+20465392 None:intergenic
AGCGGCATTCACAATGGGCG+TGG 0.487861 1.2:-20465460 MS.gene31882:CDS
TGTGAGAGATTGCAAAGTAA+AGG 0.489991 1.2:-20460776 MS.gene31882:CDS
AGTGAAACTAGGATTCTCAT+TGG 0.490637 1.2:+20463464 None:intergenic
TATCTCTTAAACTTCCAAAT+GGG 0.498661 1.2:-20464266 MS.gene31882:CDS
ATAGTAATCGTGAATGAAAG+TGG 0.499531 1.2:+20462794 None:intergenic
CGTTGAAGGTGATAGAAGAT+TGG 0.499768 1.2:-20463421 MS.gene31882:intron
AACCACAAAGGAACCAGGCC+CGG 0.503145 1.2:-20462765 MS.gene31882:CDS
TTATCACCATATCACGTTGA+AGG 0.509106 1.2:-20463435 MS.gene31882:CDS
TTTGGCTTCAAAATTGGAAG+AGG 0.520115 1.2:-20464203 MS.gene31882:CDS
TAATGGAAACACAGGAGGCA+TGG 0.520474 1.2:-20463544 MS.gene31882:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.2:-20460722 MS.gene31882:CDS
TATTCTTTCGAAAACCAACT+AGG 0.522446 1.2:+20463007 None:intergenic
CCAGGCCCGGAGAAGTTTCA+AGG 0.523708 1.2:-20462752 MS.gene31882:intron
CAATACCTTGAAACTTCTCC+GGG 0.525380 1.2:+20462747 None:intergenic
ATTCTCATTGGGATGCTCAA+TGG 0.528590 1.2:+20463476 None:intergenic
AGTAGCAATGCCATTTGAGT+TGG 0.533991 1.2:+20463927 None:intergenic
GTGAAACTAGGATTCTCATT+GGG 0.534567 1.2:+20463465 None:intergenic
AGAGATTGCAAAGTAAAGGC+TGG 0.538378 1.2:-20460772 MS.gene31882:CDS
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1.2:-20462962 MS.gene31882:CDS
ATAGCAGCGGCATTCACAAT+GGG 0.542762 1.2:-20465465 MS.gene31882:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1.2:-20463543 MS.gene31882:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1.2:-20462986 MS.gene31882:CDS
ATGAACATCTCGACTATGGT+TGG 0.544359 1.2:-20460822 MS.gene31882:CDS
ATTCCGTGGAGTTGAGAGTA+GGG 0.547073 1.2:-20460876 MS.gene31882:CDS
GTCAGTGTGCAAAATGAATT+GGG 0.549331 1.2:-20464244 MS.gene31882:CDS
TATAGCAGCGGCATTCACAA+TGG 0.555934 1.2:-20465466 MS.gene31882:CDS
TGAAACAGGTGATACCTAGT+TGG 0.556983 1.2:-20463021 MS.gene31882:intron
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.2:-20464329 MS.gene31882:intron
ATCTCAACCACAAAGGAACC+AGG 0.563537 1.2:-20462770 MS.gene31882:CDS
GCGGCATTCACAATGGGCGT+GGG 0.566224 1.2:-20465459 MS.gene31882:CDS
ATAAAAGATATGGAATATGC+GGG 0.566495 1.2:-20461237 MS.gene31882:CDS
AATCTGACCCTCCTTTGTAT+CGG 0.568734 1.2:+20464142 None:intergenic
TATATTTAGTGGAAATTCCG+TGG 0.570238 1.2:-20460890 MS.gene31882:CDS
AATTAGAAGTGTTGGTGAGG+AGG 0.570785 1.2:-20462954 MS.gene31882:CDS
ATGGTTGGTTCACTAAAGGT+TGG 0.573713 1.2:-20460807 MS.gene31882:CDS
AATTCCGTGGAGTTGAGAGT+AGG 0.585424 1.2:-20460877 MS.gene31882:CDS
CATAAAAGATATGGAATATG+CGG 0.591347 1.2:-20461238 MS.gene31882:CDS
GATAATATGAGAGTGAAACT+AGG 0.591398 1.2:+20463453 None:intergenic
TTGTCAATGTTAGTCCGTTG+AGG 0.593883 1.2:+20463892 None:intergenic
AACAATTAGAAGTGTTGGTG+AGG 0.594775 1.2:-20462957 MS.gene31882:CDS
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1.2:-20463552 MS.gene31882:intron
CTACTACTGTTACACCTCAA+CGG 0.609207 1.2:-20463906 MS.gene31882:CDS
AGTGAGCTGTTGAAGAAGCA+TGG 0.617628 1.2:-20460913 MS.gene31882:CDS
AATTGGGTGCAACGCAGTGA+TGG 0.620819 1.2:-20464228 MS.gene31882:CDS
TTCCCCTACTCTCAACTCCA+CGG 0.627106 1.2:+20460873 None:intergenic
GGAAGGAACATGGTTTGTAG+AGG 0.629163 1.2:-20460854 MS.gene31882:CDS
AAACTAAAAGATCTCCGCAT+CGG 0.638428 1.2:+20464166 None:intergenic
CGGGAACATAACTTGCAAGT+CGG 0.642213 1.2:-20462851 MS.gene31882:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1.2:-20462981 MS.gene31882:CDS
TTTGCAAGTTTGCTCCGATG+CGG 0.646883 1.2:-20464180 MS.gene31882:CDS
TACTATCATCTCAACCACAA+AGG 0.651551 1.2:-20462777 MS.gene31882:CDS
GGGCGTGGGAGTGAAGCTCA+AGG 0.660198 1.2:-20465445 MS.gene31882:CDS
TTCCGTGGAGTTGAGAGTAG+GGG 0.660437 1.2:-20460875 MS.gene31882:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1.2:-20462985 MS.gene31882:CDS
TCGTTTCAACAATATAGCAG+CGG 0.681919 1.2:-20465478 MS.gene31882:CDS
GTGGAGTTGAGAGTAGGGGA+AGG 0.685462 1.2:-20460871 MS.gene31882:CDS
TCTTATAACATCATCAGACA+AGG 0.698207 1.2:-20461033 MS.gene31882:intron
GAGGCTAATGGAAACACAGG+AGG 0.702704 1.2:-20463549 MS.gene31882:CDS
TGGACATGTGCAGAAAACCA+AGG 0.707757 1.2:-20461288 MS.gene31882:intron
TTGGTGAGGAGGATAGAACA+TGG 0.724838 1.2:-20462943 MS.gene31882:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATATAATATATAGATTA+GGG - chr1.2:20460934-20460953 MS.gene31882:intron 10.0%
!! TTTGATATAATATATAGATT+AGG - chr1.2:20460933-20460952 MS.gene31882:intron 10.0%
!!! TAAAATATACAAATTTTTCA+AGG - chr1.2:20464679-20464698 MS.gene31882:intron 10.0%
!! TAAACAGATGAATAATTAAA+AGG + chr1.2:20462380-20462399 None:intergenic 15.0%
!! TGCTTGTAATAAATTAATTA+AGG + chr1.2:20464114-20464133 None:intergenic 15.0%
!!! AAAATTTTAGGTTGAAAAAT+GGG + chr1.2:20461751-20461770 None:intergenic 15.0%
!!! ATATTTTAAGGTTTAAATCT+TGG - chr1.2:20463589-20463608 MS.gene31882:intron 15.0%
!!! ATCTTTTTTATTAATGGAAT+TGG - chr1.2:20461319-20461338 MS.gene31882:intron 15.0%
!!! ATTTTTAGTGTCAAAATTTT+AGG + chr1.2:20461763-20461782 None:intergenic 15.0%
!!! CAAATGTGTAAAATATTTTA+AGG - chr1.2:20463577-20463596 MS.gene31882:intron 15.0%
!!! CTAAGATTAATTTTTATACA+CGG - chr1.2:20464738-20464757 MS.gene31882:intron 15.0%
!!! CTATTTTATTTTACAGTTAT+TGG + chr1.2:20464496-20464515 None:intergenic 15.0%
!!! TTATTTGGTTTGATTTTATT+TGG - chr1.2:20461282-20461301 MS.gene31882:intron 15.0%
!! AAATCATGAAATTCAATTCA+TGG - chr1.2:20461535-20461554 MS.gene31882:intron 20.0%
!! AACAAAGAAAACATAGTTTA+AGG + chr1.2:20465085-20465104 None:intergenic 20.0%
!! CAAATAAAAAAGATCTATGA+CGG + chr1.2:20461269-20461288 None:intergenic 20.0%
!! TATTAACAAGAAAGACATTT+GGG + chr1.2:20462902-20462921 None:intergenic 20.0%
!! TTATCATCATCAATAAATGT+GGG - chr1.2:20460959-20460978 MS.gene31882:intron 20.0%
!! TTTATCATCATCAATAAATG+TGG - chr1.2:20460958-20460977 MS.gene31882:intron 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG + chr1.2:20462467-20462486 None:intergenic 20.0%
!!! CAAAATTTTAGGTTGAAAAA+TGG + chr1.2:20461752-20461771 None:intergenic 20.0%
!!! GAGAAAGAAGTTTATTTTAA+TGG + chr1.2:20464088-20464107 None:intergenic 20.0%
!!! GATTTTAGTCATTCTAATAA+TGG - chr1.2:20464603-20464622 MS.gene31882:intron 20.0%
!!! GCTATGATCTTTTTTATTAA+TGG - chr1.2:20461313-20461332 MS.gene31882:intron 20.0%
!!! TAAAAACTATTTTCAGCATT+TGG + chr1.2:20462610-20462629 None:intergenic 20.0%
!!! TTTAAATATGTTTTTTGTCC+TGG + chr1.2:20464790-20464809 None:intergenic 20.0%
! AACGCAATAAAATAGAACTT+GGG + chr1.2:20463676-20463695 None:intergenic 25.0%
! ACTAACAGAAAACATATTCA+AGG - chr1.2:20462940-20462959 MS.gene31882:CDS 25.0%
! AGAAATCAATGAACCAATAA+AGG + chr1.2:20461245-20461264 None:intergenic 25.0%
! AGAACTAAAAACATGTACTT+TGG + chr1.2:20462491-20462510 None:intergenic 25.0%
! AGTTTAAGAGATATTGGATT+TGG + chr1.2:20461916-20461935 None:intergenic 25.0%
! ATAAAAGATATGGAATATGC+GGG - chr1.2:20464952-20464971 MS.gene31882:intron 25.0%
! ATATCTCTTAAACTTCCAAA+TGG - chr1.2:20461922-20461941 MS.gene31882:intron 25.0%
! ATGTTAATGTTACTGTCATT+AGG - chr1.2:20463708-20463727 MS.gene31882:intron 25.0%
! ATTAACAAGAAAGACATTTG+GGG + chr1.2:20462901-20462920 None:intergenic 25.0%
! CATAAAAGATATGGAATATG+CGG - chr1.2:20464951-20464970 MS.gene31882:intron 25.0%
! CTATTAACAAGAAAGACATT+TGG + chr1.2:20462903-20462922 None:intergenic 25.0%
! TATCATCATCAATAAATGTG+GGG - chr1.2:20460960-20460979 MS.gene31882:intron 25.0%
! TATCTCTTAAACTTCCAAAT+GGG - chr1.2:20461923-20461942 MS.gene31882:intron 25.0%
! TCATTCAATAATGAAAACCA+AGG + chr1.2:20461710-20461729 None:intergenic 25.0%
! TGTTAATGTTACTGTCATTA+GGG - chr1.2:20463709-20463728 MS.gene31882:intron 25.0%
! TTTGGAAGTTTAAGAGATAT+TGG + chr1.2:20461922-20461941 None:intergenic 25.0%
! TTTGTTCATATATATGCAGT+TGG - chr1.2:20465242-20465261 MS.gene31882:intron 25.0%
!! AATAGATGATAGTGTGTTTA+AGG - chr1.2:20464537-20464556 MS.gene31882:intron 25.0%
!! ATAGATGATAGTGTGTTTAA+GGG - chr1.2:20464538-20464557 MS.gene31882:intron 25.0%
!! ATCCAGAATAAATTTTCGAA+TGG - chr1.2:20463292-20463311 MS.gene31882:intron 25.0%
!! ATGTACTTTGGTAATTTGTA+TGG + chr1.2:20462479-20462498 None:intergenic 25.0%
!! CAAAATTTGAGATGAACTAA+GGG + chr1.2:20462428-20462447 None:intergenic 25.0%
!! GCATATTCCATATCTTTTAT+GGG + chr1.2:20464952-20464971 None:intergenic 25.0%
!! TCCAGAATAAATTTTCGAAT+GGG - chr1.2:20463293-20463312 MS.gene31882:intron 25.0%
!! TTAGTATTTTCAATGTCACT+AGG + chr1.2:20462216-20462235 None:intergenic 25.0%
!! TTTGATTGATTGTAGTTTGT+TGG + chr1.2:20463561-20463580 None:intergenic 25.0%
!!! ATTGTCATGTTTACCTTTTT+TGG - chr1.2:20464042-20464061 MS.gene31882:CDS 25.0%
!!! CGTCATAGATCTTTTTTATT+TGG - chr1.2:20461267-20461286 MS.gene31882:CDS 25.0%
!!! TACAAAAACACATGGTTTTA+GGG - chr1.2:20465005-20465024 MS.gene31882:intron 25.0%
!!! TAGAATTTTGACTCTGTTTT+AGG - chr1.2:20461031-20461050 MS.gene31882:intron 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG - chr1.2:20462621-20462640 MS.gene31882:intron 25.0%
AAAACCAATGAGTTTCAACA+TGG + chr1.2:20461834-20461853 None:intergenic 30.0%
AACCATCATGAAAACAGTAT+TGG + chr1.2:20461086-20461105 None:intergenic 30.0%
AACTAGAAGAAGAGACATTT+AGG - chr1.2:20463045-20463064 MS.gene31882:intron 30.0%
AATAGAAAAAATGACTGACG+TGG - chr1.2:20464511-20464530 MS.gene31882:intron 30.0%
ACACAAACAACAGTAATAAG+TGG + chr1.2:20463905-20463924 None:intergenic 30.0%
ACATGAATGAGTTATTGCAA+GGG - chr1.2:20463204-20463223 MS.gene31882:intron 30.0%
ACCATCATGAAAACAGTATT+GGG + chr1.2:20461085-20461104 None:intergenic 30.0%
ACGCAATAAAATAGAACTTG+GGG + chr1.2:20463675-20463694 None:intergenic 30.0%
ATAATTCTTCCACAAGTGTT+AGG + chr1.2:20460898-20460917 None:intergenic 30.0%
ATAGTAATCGTGAATGAAAG+TGG + chr1.2:20463398-20463417 None:intergenic 30.0%
ATCTATGTGCAAGAATGAAT+AGG + chr1.2:20461479-20461498 None:intergenic 30.0%
CAACGCAATAAAATAGAACT+TGG + chr1.2:20463677-20463696 None:intergenic 30.0%
CGTAACAAATACTTGTTCAA+CGG - chr1.2:20463772-20463791 MS.gene31882:intron 30.0%
GAATTTACATGAGATGTTCA+AGG - chr1.2:20465132-20465151 MS.gene31882:intron 30.0%
GAGATATGAAAAGCCAAAAA+AGG + chr1.2:20464058-20464077 None:intergenic 30.0%
GATAATATGAGAGTGAAACT+AGG + chr1.2:20462739-20462758 None:intergenic 30.0%
GGGTTTAGTTAAGATAGAAA+TGG + chr1.2:20460865-20460884 None:intergenic 30.0%
TACATGAATGAGTTATTGCA+AGG - chr1.2:20463203-20463222 MS.gene31882:intron 30.0%
TATAATGAACATCTCGACTA+TGG - chr1.2:20465363-20465382 MS.gene31882:intron 30.0%
TATATTTAGTGGAAATTCCG+TGG - chr1.2:20465299-20465318 MS.gene31882:intron 30.0%
TATCTCTCTACAAAATTCCT+TGG + chr1.2:20461880-20461899 None:intergenic 30.0%
TATTCTTTCGAAAACCAACT+AGG + chr1.2:20463185-20463204 None:intergenic 30.0%
TCCCATTCGAAAATTTATTC+TGG + chr1.2:20463297-20463316 None:intergenic 30.0%
TCTTATAACATCATCAGACA+AGG - chr1.2:20465156-20465175 MS.gene31882:intron 30.0%
TTAATGCAGCAAAGTATACA+TGG + chr1.2:20461792-20461811 None:intergenic 30.0%
! AACTATTTTCAGCATTTGGA+AGG + chr1.2:20462606-20462625 None:intergenic 30.0%
! AAGAAGCATGGTATATTTAG+TGG - chr1.2:20465288-20465307 MS.gene31882:intron 30.0%
! ATAAATTTTCGAATGGGAAG+TGG - chr1.2:20463299-20463318 MS.gene31882:intron 30.0%
! ATGGTATTTGGCTTCAAAAT+TGG - chr1.2:20461980-20461999 MS.gene31882:intron 30.0%
! CAAGTTCTATTTTATTGCGT+TGG - chr1.2:20463675-20463694 MS.gene31882:intron 30.0%
! CCAAAATTTGAGATGAACTA+AGG + chr1.2:20462429-20462448 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG - chr1.2:20462426-20462445 MS.gene31882:intron 30.0%
! CGCATATTCCATATCTTTTA+TGG + chr1.2:20464953-20464972 None:intergenic 30.0%
! CGTTGAACAAGTATTTGTTA+CGG + chr1.2:20463774-20463793 None:intergenic 30.0%
! CTCTTTGAAGATACCTTTAT+TGG - chr1.2:20461229-20461248 MS.gene31882:CDS 30.0%
! GGAATTTTGTAGAGAGATAT+TGG - chr1.2:20461881-20461900 MS.gene31882:intron 30.0%
! GTACAAAAACACATGGTTTT+AGG - chr1.2:20465004-20465023 MS.gene31882:intron 30.0%
!! ATTTTGGAGATGGAATTTCA+AGG - chr1.2:20464977-20464996 MS.gene31882:intron 30.0%
!! CAATAAAGGTATCTTCAAAG+AGG + chr1.2:20461231-20461250 None:intergenic 30.0%
!!! ACAAAAACACATGGTTTTAG+GGG - chr1.2:20465006-20465025 MS.gene31882:intron 30.0%
!!! CTGCAACAACTTTATTTTGA+AGG - chr1.2:20461168-20461187 MS.gene31882:intron 30.0%
!!! CTTTTAGTTTTCCGATACAA+AGG - chr1.2:20462036-20462055 MS.gene31882:intron 30.0%
AAACAGTCCACTTAAAGAGT+TGG + chr1.2:20461381-20461400 None:intergenic 35.0%
AAACTAAAAGATCTCCGCAT+CGG + chr1.2:20462026-20462045 None:intergenic 35.0%
AACAACAGTAATAAGTGGAC+AGG + chr1.2:20463900-20463919 None:intergenic 35.0%
AACCATGATCAAAACAGTGT+TGG + chr1.2:20461437-20461456 None:intergenic 35.0%
AAGTGTTAGGAAACATGCAT+GGG + chr1.2:20460885-20460904 None:intergenic 35.0%
ACAAATACTTGTTCAACGGT+CGG - chr1.2:20463776-20463795 MS.gene31882:intron 35.0%
ACCATGATCAAAACAGTGTT+GGG + chr1.2:20461436-20461455 None:intergenic 35.0%
AGAGAGAAGAAACAAGAACA+GGG - chr1.2:20464166-20464185 MS.gene31882:CDS 35.0%
AGTGAAACTAGGATTCTCAT+TGG + chr1.2:20462728-20462747 None:intergenic 35.0%
ATTCATGCATGAAATGTGCA+AGG + chr1.2:20463115-20463134 None:intergenic 35.0%
CAAATCAGTTTCACATGGTT+TGG - chr1.2:20463828-20463847 MS.gene31882:intron 35.0%
CAATCCATGTTGAAACTCAT+TGG - chr1.2:20461827-20461846 MS.gene31882:intron 35.0%
CACACACATAGCTATATACA+TGG + chr1.2:20465206-20465225 None:intergenic 35.0%
CCATCATGAAAACAGTATTG+GGG + chr1.2:20461084-20461103 None:intergenic 35.0%
CGCAATAAAATAGAACTTGG+GGG + chr1.2:20463674-20463693 None:intergenic 35.0%
CGTCCACTTAAAAAGTGATT+CGG + chr1.2:20461005-20461024 None:intergenic 35.0%
CTAAAAGTGATATATCTGCC+AGG - chr1.2:20464769-20464788 MS.gene31882:intron 35.0%
GAATAAGAAGAAAGTGAGTG+TGG + chr1.2:20460831-20460850 None:intergenic 35.0%
GACAACACCCATAAAAGATA+TGG - chr1.2:20464942-20464961 MS.gene31882:intron 35.0%
GACTTTCACAAATTCTGCTT+CGG - chr1.2:20461125-20461144 MS.gene31882:intron 35.0%
GCAATAAAATAGAACTTGGG+GGG + chr1.2:20463673-20463692 None:intergenic 35.0%
GTCAGTGTGCAAAATGAATT+GGG - chr1.2:20461945-20461964 MS.gene31882:intron 35.0%
GTCCACTTAAAAAGTGATTC+GGG + chr1.2:20461004-20461023 None:intergenic 35.0%
GTGAAACTAGGATTCTCATT+GGG + chr1.2:20462727-20462746 None:intergenic 35.0%
TACTATCATCTCAACCACAA+AGG - chr1.2:20463412-20463431 MS.gene31882:intron 35.0%
TCAATACTCATCCACATAGA+GGG + chr1.2:20461687-20461706 None:intergenic 35.0%
TCGTTTCAACAATATAGCAG+CGG - chr1.2:20460711-20460730 MS.gene31882:CDS 35.0%
TGAGACAAATCAGTTTCACA+TGG - chr1.2:20463823-20463842 MS.gene31882:intron 35.0%
TGTGAGAGATTGCAAAGTAA+AGG - chr1.2:20465413-20465432 MS.gene31882:CDS 35.0%
TGTGCAAAATCATGTGTTCA+AGG - chr1.2:20465467-20465486 MS.gene31882:CDS 35.0%
TTATCACCATATCACGTTGA+AGG - chr1.2:20462754-20462773 MS.gene31882:CDS 35.0%
TTCTGTCAAAATGGAATGAG+CGG - chr1.2:20463866-20463885 MS.gene31882:CDS 35.0%
TTTATACCATGACCTGAAAC+AGG - chr1.2:20463154-20463173 MS.gene31882:intron 35.0%
! AAGGCAACAATTAGAAGTGT+TGG - chr1.2:20463227-20463246 MS.gene31882:intron 35.0%
! ACTTACCAGAAACTTTTTGC+TGG + chr1.2:20462347-20462366 None:intergenic 35.0%
! AGAGGCTTTCATTTTACTAG+AGG - chr1.2:20462846-20462865 MS.gene31882:CDS 35.0%
! AGTATTTGTTACGGTTACGT+CGG + chr1.2:20463765-20463784 None:intergenic 35.0%
! CATCATGAAAACAGTATTGG+GGG + chr1.2:20461083-20461102 None:intergenic 35.0%
! CTTACCAGAAACTTTTTGCT+GGG + chr1.2:20462346-20462365 None:intergenic 35.0%
! GTGTTGTCTCTGATTTTTCT+TGG + chr1.2:20464930-20464949 None:intergenic 35.0%
! GTTTTCATGATGGTTTCTGT+TGG - chr1.2:20461091-20461110 MS.gene31882:intron 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG - chr1.2:20462628-20462647 MS.gene31882:intron 35.0%
! TAGTTTTCCGATACAAAGGA+GGG - chr1.2:20462040-20462059 MS.gene31882:intron 35.0%
! TTTGGCTTCAAAATTGGAAG+AGG - chr1.2:20461986-20462005 MS.gene31882:intron 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG - chr1.2:20463232-20463251 MS.gene31882:intron 35.0%
!! CTCTTTAAGTGGACTGTTTA+AGG - chr1.2:20461382-20461401 MS.gene31882:intron 35.0%
!! CTGAGGTTTTATGACAGTAA+GGG + chr1.2:20464429-20464448 None:intergenic 35.0%
!! TGAGGTTTTATGACAGTAAG+GGG + chr1.2:20464428-20464447 None:intergenic 35.0%
!! TTAGTTTTCCGATACAAAGG+AGG - chr1.2:20462039-20462058 MS.gene31882:intron 35.0%
AACCTCAGGATGAAGGATAA+TGG - chr1.2:20464441-20464460 MS.gene31882:intron 40.0%
AACTAGGTATCACCTGTTTC+AGG + chr1.2:20463169-20463188 None:intergenic 40.0%
AATCTGACCCTCCTTTGTAT+CGG + chr1.2:20462050-20462069 None:intergenic 40.0%
ACATACATTGGACAGTGTGT+AGG + chr1.2:20463989-20464008 None:intergenic 40.0%
ACATGTCCACAAACTTCTCA+GGG + chr1.2:20464890-20464909 None:intergenic 40.0%
AGAGATTGCAAAGTAAAGGC+TGG - chr1.2:20465417-20465436 MS.gene31882:CDS 40.0%
AGGAGCTGTACAAAAACACA+TGG - chr1.2:20464997-20465016 MS.gene31882:intron 40.0%
AGGGATCTACTGAAGAAGTT+GGG + chr1.2:20464871-20464890 None:intergenic 40.0%
ATGAACATCTCGACTATGGT+TGG - chr1.2:20465367-20465386 MS.gene31882:intron 40.0%
ATGTATGTGTGCCATCAAAC+AGG - chr1.2:20464001-20464020 MS.gene31882:CDS 40.0%
ATTCTCATTGGGATGCTCAA+TGG + chr1.2:20462716-20462735 None:intergenic 40.0%
CAAGTGTTAGGAAACATGCA+TGG + chr1.2:20460886-20460905 None:intergenic 40.0%
CAAGTTGTTTGTGTTGAAGC+TGG + chr1.2:20460800-20460819 None:intergenic 40.0%
CAATACCTTGAAACTTCTCC+GGG + chr1.2:20463445-20463464 None:intergenic 40.0%
CAGAGAGAAGAAACAAGAAC+AGG - chr1.2:20464165-20464184 MS.gene31882:CDS 40.0%
CAGTAATAAGTGGACAGGTT+CGG + chr1.2:20463895-20463914 None:intergenic 40.0%
CCATGATCAAAACAGTGTTG+GGG + chr1.2:20461435-20461454 None:intergenic 40.0%
CCTTACTGTCATAAAACCTC+AGG - chr1.2:20464427-20464446 MS.gene31882:intron 40.0%
CGTTGAAGGTGATAGAAGAT+TGG - chr1.2:20462768-20462787 MS.gene31882:CDS 40.0%
CTACTACTGTTACACCTCAA+CGG - chr1.2:20462283-20462302 MS.gene31882:intron 40.0%
CTATCACCTTCAACGTGATA+TGG + chr1.2:20462763-20462782 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG - chr1.2:20463208-20463227 MS.gene31882:intron 40.0%
GAGATGAGAGATATACAGAG+AGG - chr1.2:20464207-20464226 MS.gene31882:CDS 40.0%
GCAATACCTTGAAACTTCTC+CGG + chr1.2:20463446-20463465 None:intergenic 40.0%
GGTCAGTGTGCAAAATGAAT+TGG - chr1.2:20461944-20461963 MS.gene31882:intron 40.0%
GGTCATACCAACTCTTTAAG+TGG - chr1.2:20461371-20461390 MS.gene31882:intron 40.0%
GTCAATACTCATCCACATAG+AGG + chr1.2:20461688-20461707 None:intergenic 40.0%
GTCATAAAACCTCAGGATGA+AGG - chr1.2:20464434-20464453 MS.gene31882:intron 40.0%
GTTGTGGGTAGTGTAAATTG+TGG - chr1.2:20464467-20464486 MS.gene31882:intron 40.0%
TGAAACAGGTGATACCTAGT+TGG - chr1.2:20463168-20463187 MS.gene31882:intron 40.0%
TGCATGTTTCCTAACACTTG+TGG - chr1.2:20460886-20460905 MS.gene31882:CDS 40.0%
TGTATGTGTGCCATCAAACA+GGG - chr1.2:20464002-20464021 MS.gene31882:CDS 40.0%
TGTTCTTGCAGATGATTCCA+AGG - chr1.2:20461860-20461879 MS.gene31882:intron 40.0%
TTCTTTGGTGAGCAGTTGTT+GGG - chr1.2:20464372-20464391 MS.gene31882:intron 40.0%
TTGTCAATGTTAGTCCGTTG+AGG + chr1.2:20462300-20462319 None:intergenic 40.0%
TTTGTACCAAACTGTGTGAG+AGG - chr1.2:20462828-20462847 MS.gene31882:CDS 40.0%
! AGTAGCAATGCCATTTGAGT+TGG + chr1.2:20462265-20462284 None:intergenic 40.0%
! ATGGAATATGCGGGCAATTT+TGG - chr1.2:20464961-20464980 MS.gene31882:intron 40.0%
! ATGGTTGGTTCACTAAAGGT+TGG - chr1.2:20465382-20465401 MS.gene31882:intron 40.0%
! ATTTTCGAATGGGAAGTGGT+TGG - chr1.2:20463303-20463322 MS.gene31882:intron 40.0%
! ATTTTGCACACTGACCCATT+TGG + chr1.2:20461940-20461959 None:intergenic 40.0%
! CAGTTTCACATGGTTTGGAA+CGG - chr1.2:20463833-20463852 MS.gene31882:intron 40.0%
! CATGATCAAAACAGTGTTGG+GGG + chr1.2:20461434-20461453 None:intergenic 40.0%
! CCCCAATACTGTTTTCATGA+TGG - chr1.2:20461081-20461100 MS.gene31882:intron 40.0%
! CTGATTTTTCTTGGACTCCT+TGG + chr1.2:20464921-20464940 None:intergenic 40.0%
! CTGTTCTTGTTTCTTCTCTC+TGG + chr1.2:20464167-20464186 None:intergenic 40.0%
! CTTAAAAAGTGATTCGGGTC+AGG + chr1.2:20460999-20461018 None:intergenic 40.0%
! GACTATGGTTGGTTCACTAA+AGG - chr1.2:20465378-20465397 MS.gene31882:intron 40.0%
! GGTTCACGTTTTCTGATCTA+CGG - chr1.2:20464346-20464365 MS.gene31882:intron 40.0%
! GTTCACGTTTTCTGATCTAC+GGG - chr1.2:20464347-20464366 MS.gene31882:intron 40.0%
! GTTTGATGGCACACATACAT+TGG + chr1.2:20464001-20464020 None:intergenic 40.0%
! TCAGGATGAAGGATAATGGT+GGG - chr1.2:20464445-20464464 MS.gene31882:intron 40.0%
! TTGTTTCTTCTCTCTGGTAG+TGG + chr1.2:20464161-20464180 None:intergenic 40.0%
! TTTAGCACATGTTGACTGCA+AGG - chr1.2:20461191-20461210 MS.gene31882:CDS 40.0%
!! AATTAGAAGTGTTGGTGAGG+AGG - chr1.2:20463235-20463254 MS.gene31882:intron 40.0%
!! ATGTGGATGAGTATTGACCT+TGG - chr1.2:20461690-20461709 MS.gene31882:intron 40.0%
!! CCTGAGGTTTTATGACAGTA+AGG + chr1.2:20464430-20464449 None:intergenic 40.0%
!! GTGGTTGGAAGTCATTTTCA+CGG - chr1.2:20463318-20463337 MS.gene31882:intron 40.0%
!! TGGTTGGAAGTCATTTTCAC+GGG - chr1.2:20463319-20463338 MS.gene31882:intron 40.0%
!!! GACCCGAATCACTTTTTAAG+TGG - chr1.2:20460999-20461018 MS.gene31882:intron 40.0%
AAACTGACGTTGAAACGGTC+GGG - chr1.2:20464320-20464339 MS.gene31882:CDS 45.0%
AAGAGAACCGCCAACTCAAA+TGG - chr1.2:20462252-20462271 MS.gene31882:intron 45.0%
AATTCCGTGGAGTTGAGAGT+AGG - chr1.2:20465312-20465331 MS.gene31882:intron 45.0%
AGTGAGCTGTTGAAGAAGCA+TGG - chr1.2:20465276-20465295 MS.gene31882:intron 45.0%
AGTGCTACACAGCATGACTT+TGG - chr1.2:20461659-20461678 MS.gene31882:intron 45.0%
ATAGCAGCGGCATTCACAAT+GGG - chr1.2:20460724-20460743 MS.gene31882:CDS 45.0%
ATCTCAACCACAAAGGAACC+AGG - chr1.2:20463419-20463438 MS.gene31882:intron 45.0%
ATGTGTAGAGTGTGTGTTCG+TGG - chr1.2:20464562-20464581 MS.gene31882:intron 45.0%
ATTCCGTGGAGTTGAGAGTA+GGG - chr1.2:20465313-20465332 MS.gene31882:intron 45.0%
CACATGTCCACAAACTTCTC+AGG + chr1.2:20464891-20464910 None:intergenic 45.0%
CACCATTATCCTTCATCCTG+AGG + chr1.2:20464446-20464465 None:intergenic 45.0%
CAGGGATCTACTGAAGAAGT+TGG + chr1.2:20464872-20464891 None:intergenic 45.0%
CGAAAGCGGTTCTGTCAAAA+TGG - chr1.2:20463857-20463876 MS.gene31882:CDS 45.0%
GAAACTGACGTTGAAACGGT+CGG - chr1.2:20464319-20464338 MS.gene31882:CDS 45.0%
GACCGTTTCAACGTCAGTTT+CGG + chr1.2:20464320-20464339 None:intergenic 45.0%
GCAACCCAGCAAAAAGTTTC+TGG - chr1.2:20462339-20462358 MS.gene31882:intron 45.0%
GGGATCTACTGAAGAAGTTG+GGG + chr1.2:20464870-20464889 None:intergenic 45.0%
GTAGATCCCTGAGAAGTTTG+TGG - chr1.2:20464881-20464900 MS.gene31882:intron 45.0%
GTTACGGTTACGTCGGATTT+CGG + chr1.2:20463758-20463777 None:intergenic 45.0%
GTTCTTTGGTGAGCAGTTGT+TGG - chr1.2:20464371-20464390 MS.gene31882:intron 45.0%
TAATGGAAACACAGGAGGCA+TGG - chr1.2:20462645-20462664 MS.gene31882:intron 45.0%
TATAGCAGCGGCATTCACAA+TGG - chr1.2:20460723-20460742 MS.gene31882:CDS 45.0%
TCAAGACACACCCTGTTTGA+TGG + chr1.2:20464015-20464034 None:intergenic 45.0%
TCTGATCTACGGGTGTTCTT+TGG - chr1.2:20464357-20464376 MS.gene31882:intron 45.0%
TGAAAGCCTCTCACACAGTT+TGG + chr1.2:20462837-20462856 None:intergenic 45.0%
TGCAACGCAGTGATGGTATT+TGG - chr1.2:20461968-20461987 MS.gene31882:intron 45.0%
TGCTTCTTCAACAGCTCACT+TGG + chr1.2:20465276-20465295 None:intergenic 45.0%
TGGACATGTGCAGAAAACCA+AGG - chr1.2:20464901-20464920 MS.gene31882:intron 45.0%
TTGGTGAGGAGGATAGAACA+TGG - chr1.2:20463246-20463265 MS.gene31882:intron 45.0%
! AAAAAGTGATTCGGGTCAGG+TGG + chr1.2:20460996-20461015 None:intergenic 45.0%
! AATGGAAACACAGGAGGCAT+GGG - chr1.2:20462646-20462665 MS.gene31882:intron 45.0%
! CGGGAACATAACTTGCAAGT+CGG - chr1.2:20463338-20463357 MS.gene31882:intron 45.0%
! CTCAGGATGAAGGATAATGG+TGG - chr1.2:20464444-20464463 MS.gene31882:intron 45.0%
! GCGGTTCTCTTTTTCTTGAG+GGG + chr1.2:20462243-20462262 None:intergenic 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - chr1.2:20465335-20465354 MS.gene31882:intron 45.0%
! GGCGGTTCTCTTTTTCTTGA+GGG + chr1.2:20462244-20462263 None:intergenic 45.0%
! GTATCACCTGTTTCAGGTCA+TGG + chr1.2:20463163-20463182 None:intergenic 45.0%
! TCGACTTGTGCTCAATCACT+TGG - chr1.2:20461350-20461369 MS.gene31882:intron 45.0%
! TGACGGGTCTAACGGAATAA+CGG + chr1.2:20464293-20464312 None:intergenic 45.0%
! TGACTTTGGTTCCCTCTATG+TGG - chr1.2:20461673-20461692 MS.gene31882:intron 45.0%
! TGGCGGTTCTCTTTTTCTTG+AGG + chr1.2:20462245-20462264 None:intergenic 45.0%
! TTTGCAAGTTTGCTCCGATG+CGG - chr1.2:20462009-20462028 MS.gene31882:intron 45.0%
!! AGCAATGCCATTTGAGTTGG+CGG + chr1.2:20462262-20462281 None:intergenic 45.0%
!! GAAGGATAATGGTGGGTTGT+GGG - chr1.2:20464452-20464471 MS.gene31882:intron 45.0%
!! TATGCGGGCAATTTTGGAGA+TGG - chr1.2:20464967-20464986 MS.gene31882:intron 45.0%
!! TGAAGGATAATGGTGGGTTG+TGG - chr1.2:20464451-20464470 MS.gene31882:intron 45.0%
!! TTCTTCTCTCTGGTAGTGGT+GGG + chr1.2:20464157-20464176 None:intergenic 45.0%
!! TTTCTTCTCTCTGGTAGTGG+TGG + chr1.2:20464158-20464177 None:intergenic 45.0%
!!! CCCCAACACTGTTTTGATCA+TGG - chr1.2:20461432-20461451 MS.gene31882:intron 45.0%
!! AAAAATATACATAAATAAAA+TGG + chr1.2:20462518-20462537 None:intergenic 5.0%
!! AAAATATACATAAATAAAAT+GGG + chr1.2:20462517-20462536 None:intergenic 5.0%
AATTGGGTGCAACGCAGTGA+TGG - chr1.2:20461961-20461980 MS.gene31882:intron 50.0%
CGCCGAAACTGACGTTGAAA+CGG - chr1.2:20464315-20464334 MS.gene31882:CDS 50.0%
CGTTTCAACGTCAGTTTCGG+CGG + chr1.2:20464317-20464336 None:intergenic 50.0%
GACGGGTCTAACGGAATAAC+GGG + chr1.2:20464292-20464311 None:intergenic 50.0%
GAGGCTAATGGAAACACAGG+AGG - chr1.2:20462640-20462659 MS.gene31882:intron 50.0%
GCAGAGGCTAATGGAAACAC+AGG - chr1.2:20462637-20462656 MS.gene31882:intron 50.0%
GTTTCAACGTCAGTTTCGGC+GGG + chr1.2:20464316-20464335 None:intergenic 50.0%
TACAACCGAGACAAACCACC+TGG - chr1.2:20464262-20464281 MS.gene31882:CDS 50.0%
TGAGAGTAGGGGAAGGAACA+TGG - chr1.2:20465325-20465344 MS.gene31882:intron 50.0%
TTCCCCTACTCTCAACTCCA+CGG + chr1.2:20465319-20465338 None:intergenic 50.0%
TTCCGTGGAGTTGAGAGTAG+GGG - chr1.2:20465314-20465333 MS.gene31882:intron 50.0%
! TGGTTTGGAACGGACGAAAG+CGG - chr1.2:20463843-20463862 MS.gene31882:intron 50.0%
!! GGTCTAACGGAATAACGGGT+GGG + chr1.2:20464288-20464307 None:intergenic 50.0%
AACCACAAAGGAACCAGGCC+CGG - chr1.2:20463424-20463443 MS.gene31882:CDS 55.0%
CGGTTACGTCGGATTTCGGT+CGG + chr1.2:20463754-20463773 None:intergenic 55.0%
GACGTTGAAACGGTCGGGAA+TGG - chr1.2:20464325-20464344 MS.gene31882:intron 55.0%
GTGGAGTTGAGAGTAGGGGA+AGG - chr1.2:20465318-20465337 MS.gene31882:intron 55.0%
GTTCAACGGTCGGATGCGTA+CGG - chr1.2:20463786-20463805 MS.gene31882:intron 55.0%
TGACAGTAAGGGGTGAGCAC+CGG + chr1.2:20464418-20464437 None:intergenic 55.0%
TTCAACGGTCGGATGCGTAC+GGG - chr1.2:20463787-20463806 MS.gene31882:intron 55.0%
! GGGTCTAACGGAATAACGGG+TGG + chr1.2:20464289-20464308 None:intergenic 55.0%
!! AACTTGGGGGGACTAGCTGA+AGG + chr1.2:20463661-20463680 None:intergenic 55.0%
!! ACTTGGGGGGACTAGCTGAA+GGG + chr1.2:20463660-20463679 None:intergenic 55.0%
ACGTCAGTTTCGGCGGGTGA+CGG + chr1.2:20464310-20464329 None:intergenic 60.0%
AGCGGCATTCACAATGGGCG+TGG - chr1.2:20460729-20460748 MS.gene31882:CDS 60.0%
CCAGGCCCGGAGAAGTTTCA+AGG - chr1.2:20463437-20463456 MS.gene31882:CDS 60.0%
CCTTGAAACTTCTCCGGGCC+TGG + chr1.2:20463440-20463459 None:intergenic 60.0%
GCGGCATTCACAATGGGCGT+GGG - chr1.2:20460730-20460749 MS.gene31882:CDS 60.0%
! GTGGGCCAGGTGGTTTGTCT+CGG + chr1.2:20464270-20464289 None:intergenic 60.0%
!! AACGGAATAACGGGTGGGCC+AGG + chr1.2:20464283-20464302 None:intergenic 60.0%
!! AGTAAGGGGTGAGCACCGGT+CGG + chr1.2:20464414-20464433 None:intergenic 60.0%
CGAATCCGCCCGTAACCGAC+CGG - chr1.2:20464396-20464415 MS.gene31882:intron 65.0%
CGTCAGTTTCGGCGGGTGAC+GGG + chr1.2:20464309-20464328 None:intergenic 65.0%
CTCCGGGCCTGGTTCCTTTG+TGG + chr1.2:20463429-20463448 None:intergenic 65.0%
GGGCGTGGGAGTGAAGCTCA+AGG - chr1.2:20460744-20460763 MS.gene31882:CDS 65.0%
GGTCGGATGCGTACGGGCTT+CGG - chr1.2:20463793-20463812 MS.gene31882:intron 65.0%
TCTCACACTTCACGCGCGCG+TGG + chr1.2:20463939-20463958 None:intergenic 65.0%
! CGGTCGGTTACGGGCGGATT+CGG + chr1.2:20464398-20464417 None:intergenic 65.0%
!! GGAATAACGGGTGGGCCAGG+TGG + chr1.2:20464280-20464299 None:intergenic 65.0%
!! GGGTGAGCACCGGTCGGTTA+CGG + chr1.2:20464408-20464427 None:intergenic 65.0%
!! GGTGAGCACCGGTCGGTTAC+GGG + chr1.2:20464407-20464426 None:intergenic 65.0%
!! TCGGCGGGTGACGGGTCTAA+CGG + chr1.2:20464301-20464320 None:intergenic 65.0%
!! GAGCACCGGTCGGTTACGGG+CGG + chr1.2:20464404-20464423 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20460708 20465503 20460708 ID=MS.gene31882
chr1.2 mRNA 20460708 20465503 20460708 ID=MS.gene31882.t1;Parent=MS.gene31882
chr1.2 exon 20465393 20465503 20465393 ID=MS.gene31882.t1.exon1;Parent=MS.gene31882.t1
chr1.2 CDS 20465393 20465503 20465393 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20463851 20464340 20463851 ID=MS.gene31882.t1.exon2;Parent=MS.gene31882.t1
chr1.2 CDS 20463851 20464340 20463851 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20463422 20463570 20463422 ID=MS.gene31882.t1.exon3;Parent=MS.gene31882.t1
chr1.2 CDS 20463422 20463570 20463422 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20462753 20463035 20462753 ID=MS.gene31882.t1.exon4;Parent=MS.gene31882.t1
chr1.2 CDS 20462753 20463035 20462753 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20461184 20461297 20461184 ID=MS.gene31882.t1.exon5;Parent=MS.gene31882.t1
chr1.2 CDS 20461184 20461297 20461184 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20461034 20461092 20461034 ID=MS.gene31882.t1.exon6;Parent=MS.gene31882.t1
chr1.2 CDS 20461034 20461092 20461034 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
chr1.2 exon 20460708 20460950 20460708 ID=MS.gene31882.t1.exon7;Parent=MS.gene31882.t1
chr1.2 CDS 20460708 20460950 20460708 ID=cds.MS.gene31882.t1;Parent=MS.gene31882.t1
Gene Sequence

>MS.gene31882

ATGTCGTTTCAACAATATAGCAGCGGCATTCACAATGGGCGTGGGAGTGAAGCTCAAGGAATGCATTTCTATTTAACTGTTCAACAACGCCAGCTTCAACACAAACAACTTGTGAGCACACCACACTCACTTTCTTCTTATTCATTCATTCTTTCCATTTCTATCTTAACTAAACCCATGCATGTTTCCTAACACTTGTGGAAGAATTATCATAAATGTGATTTATTTGATATAATATATAGATTAGGGATTTATCATCATCAATAAATGTGGGGAGCTCATTAACCACCTGACCCGAATCACTTTTTAAGTGGACGTTTTAGTAGAATTTTGACTCTGTTTTAGGTTTGTAGTCAATGTGTTTGATGAAAACCCCCAATACTGTTTTCATGATGGTTTCTGTTGGATAATATAATTGACTTTCACAAATTCTGCTTCGGAAATTGTTGCTATGTTCTTTCTGCAACAACTTTATTTTGAAGGTTTAGCACATGTTGACTGCAAGGTGTTAGAGTTTAGTCCTCTTTGAAGATACCTTTATTGGTTCATTGATTTCTTCCGTCATAGATCTTTTTTATTTGGTTTGATTTTATTTGGAAATTGTTGCTATGATCTTTTTTATTAATGGAATTGGTTTTTCGCTCGACTTGTGCTCAATCACTTGGTCATACCAACTCTTTAAGTGGACTGTTTAAGGTCTGTAGTCAATGTGTTTGATGAAAACCCCCAACACTGTTTTGATCATGGTTTCTGTCTGTTGCAAAATTACCTATTCATTCTTGCACATAGATCTCATTATTCTTGAGTTTCAGAACTTATTTGTGAGCAAATCATGAAATTCAATTCATGGAGTAATGTTGCATAATTGCTTTATGATATGACTTGTGTGTATCTACTAGACTAACAGTTAGTTCAGATTTCACAAATTCTGCTTTGATATATGTCTCTGTTAGTGCTACACAGCATGACTTTGGTTCCCTCTATGTGGATGAGTATTGACCTTGGTTTTCATTATTGAATGAATTTTGTTAAAAAAAATACCCATTTTTCAACCTAAAATTTTGACACTAAAAATTAACAACCATGTATACTTTGCTGCATTAATCTTCATCACTAGTTCAATCCATGTTGAAACTCATTGGTTTTTTAAAATGTTCTTGCAGATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCTCTTAAACTTCCAAATGGGTCAGTGTGCAAAATGAATTGGGTGCAACGCAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCAAGTTTGCTCCGATGCGGAGATCTTTTAGTTTTCCGATACAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTCAATTAGAAATTGACTATTCAAGTATGAGATGCAACGACGATCAAGAAAATACTAAAGAGAGTGATGATGATGATGATGATGATGATGACGACGACGATTATGAGTGTGTTGAGATTCCTAGTGACATTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAACCGCCAACTCAAATGGCATTGCTACTACTACTGTTACACCTCAACGGACTAACATTGACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCTGGTAAGTTATTCTACTTCCTTTTAATTATTCATCTGTTTATGAGCAGAATATGCTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTTCTTTCCACTTTTTAATCCATACAAATTACCAAAGTACATGTTTTTAGTTCTATACCCATTTTATTTATGTATATTTTTTAAGATTAAATTAATTTTCAAGACTGTCATACAAAAAAAATCAAGACACAAACTTTTATTTTGTACCTTCCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCGCCATTGAGCATCCCAATGAGAATCCTAGTTTCACTCTCATATTATCACCATATCACGTTGAAGGTGATAGAAGATTGGTATGTTTCTTATACTACTTTTTCAGTAATAGTGACATTTTGTACCAAACTGTGTGAGAGGCTTTCATTTTACTAGAGGAAGTGAATGTATTGAGACTACAAACAAATCCCCAAATGTCTTTCTTGTTAATAGTTTTATTGAAAAAACTTACTAACAGAAAACATATTCAAGGAGTAATGAAATTTATTCATTAAATTATTAGCAAAAGAAAAAAGTATAGCAAACATACTAAAGACACATTTGAAGATCAAAATAACTAGAAGAAGAGACATTTAGGCATATTTTTATAATTTTGATACATTTAAGTACTGTTTGAATGAGCCTTGCACATTTCATGCATGAATATATTTTAATCAATATCTGTTTATACCATGACCTGAAACAGGTGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTAATGAATCCAGAATAAATTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACGGGAACATAACTTGCAAGTCGGTGACGTGTGTATGTTTCAGATGACTCGACGCAAACCACTTTCATTCACGATTACTATCATCTCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGGTATTGCTTTTATTATTGTTGTTTTTGAAATGATACATATTTTATTATCTTCTGATTTTGATTTTGATACATTTGATCAATGTTAAAAGTTTTAATTTGCCAACAAACTACAATCAATCAAATGTGTAAAATATTTTAAGGTTTAAATCTTGGACATCATGTTGTGTAGTAGAACGAATATTTCACTTGATTGTACAACCCTTCAGCTAGTCCCCCCAAGTTCTATTTTATTGCGTTGGTTAAATACATATGTTAATGTTACTGTCATTAGGGCTGAGCAAGAATTTGTCATCCGACCGAAATCCGACGTAACCGTAACAAATACTTGTTCAACGGTCGGATGCGTACGGGCTTCGGAATGAAGTGAGACAAATCAGTTTCACATGGTTTGGAACGGACGAAAGCGGTTCTGTCAAAATGGAATGAGCGGTGTCCGAACCTGTCCACTTATTACTGTTGTTTGTGTCTCTGTAGAAGCCACGCGCGCGTGAAGTGTGAGACTATCTCAAGTCTTGAAAATTCAACAACCTACACACTGTCCAATGTATGTGTGCCATCAAACAGGGTGTGTCTTGACTTTTCAATTGTCATGTTTACCTTTTTTGGCTTTTCATATCTCATGCACTCCATTAAAATAAACTTCTTTCTCTTACCTTAATTAATTTATTACAAGCAAGCAAGAATATGATATTGAGCCCACCACTACCAGAGAGAAGAAACAAGAACAGGGAATGAACACGAAGCACATGAGATGAGAGATATACAGAGAGGAGAAGAACATTTTCGCAGATGAAAGCTAGAGATACAACCGAGACAAACCACCTGGCCCACCCGTTATTCCGTTAGACCCGTCACCCGCCGAAACTGACGTTGAAACGGTCGGGAATGGTTCACGTTTTCTGATCTACGGGTGTTCTTTGGTGAGCAGTTGTTGGGCCGAATCCGCCCGTAACCGACCGGTGCTCACCCCTTACTGTCATAAAACCTCAGGATGAAGGATAATGGTGGGTTGTGGGTAGTGTAAATTGTGGTGACCAATAACTGTAAAATAAAATAGAAAAAATGACTGACGTGGAACAATAGATGATAGTGTGTTTAAGGGAATGTGTAGAGTGTGTGTTCGTGGCATTTCTATAGAGTATTTGATTTTAGTCATTCTAATAATGGCTACATAAAAACTAAGATAAATACTGTACACATATATATTACATGATTAATTCTAAAATATACAAATTTTTCAAGGACTAATACAAAACTATGATCGAAAGTGATATATTTACTAAGATTAATTTTTATACACGGATTAGAAGCTAAAAGTGATATATCTGCCAGGACAAAAAACATATTTAAACTAAGTTGTAATGATCTTGTGATTATAATTGATTTGCACATAGCATTAGTAGATTTTCCCCAACTTCTTCAGTAGATCCCTGAGAAGTTTGTGGACATGTGCAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCCATAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGTACAAAAACACATGGTTTTAGGGGTATTCATCTTAATTTTGTTTTCGTGTTTTTTTGTGTACAATTCATGCAAATCTCCTTAAACTATGTTTTCTTTGTTGTTAATTACTGCAGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTCTTATAACATCATCAGACAAGGTATGAATTACGTAAAATGCTGTTACCATGTATATAGCTATGTGTGTGAATGTATAAAATTTAATTTGTTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCCGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGGCTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA
Protein sequence

>MS.gene31882.t1

MSFQQYSSGIHNGRGSEAQGMHFYLTVQQRQLQHKQLMIPRNFVERYWKDVPNPISLKLPNGSVCKMNWVQRSDGIWLQNWKRFASLLRCGDLLVFRYKGGSDFHVIVLDDSQLEIDYSSMRCNDDQENTKESDDDDDDDDDDDDYECVEIPSDIENTKIPLKKKRTANSNGIATTTVTPQRTNIDKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSCAIEHPNENPSFTLILSPYHVEGDRRLVIPSWFSKEYMNELLQGKATIRSVGEEDRTWHVTLNFNESRINFRMGSGWKSFSREHNLQVGDVCMFQMTRRKPLSFTITIISTTKEPGPEKFQENQGVQEKSETTPIKDMEYAGNFGDGISRSCTKTHGFRDSVSLNLHEMFKVLITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKAGDTCLFETIDVQNHVFKVSIV