AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067200.t1 MTR_1g035620 89.318 337 32 4 1 337 1 333 0.0 609
MS.gene067200.t1 MTR_1g050845 85.799 338 29 5 1 337 1 320 0.0 566
MS.gene067200.t1 MTR_1g035640 47.647 340 146 10 1 319 1 329 1.21e-90 280
MS.gene067200.t1 MTR_1g035570 43.417 357 143 11 1 337 1 318 3.26e-81 254
MS.gene067200.t1 MTR_1g035650 56.808 213 67 5 1 198 1 203 1.78e-68 214
MS.gene067200.t1 MTR_6g061070 36.570 309 159 6 9 283 18 323 3.56e-53 183
MS.gene067200.t1 MTR_1g035490 41.176 204 104 6 141 337 58 252 5.04e-37 136
MS.gene067200.t1 MTR_7g050710 31.313 297 181 9 6 280 10 305 2.83e-35 132
MS.gene067200.t1 MTR_3g098790 30.717 293 180 9 6 280 10 297 8.18e-34 128
MS.gene067200.t1 MTR_5g044670 30.233 301 184 8 3 283 10 304 6.67e-33 125
MS.gene067200.t1 MTR_7g050580 29.010 293 176 6 6 280 10 288 1.59e-32 124
MS.gene067200.t1 MTR_1g033740 41.975 162 73 5 9 156 22 176 3.37e-31 117
MS.gene067200.t1 MTR_7g050560 28.571 294 176 8 6 280 10 288 9.63e-31 119
MS.gene067200.t1 MTR_8g103940 27.950 322 165 10 2 280 32 329 1.08e-28 117
MS.gene067200.t1 MTR_1g035480 36.310 168 93 4 2 156 3 169 1.78e-27 107
MS.gene067200.t1 MTR_7g050720 29.260 311 176 11 6 280 7 309 8.81e-27 108
MS.gene067200.t1 MTR_1g035500 37.888 161 90 4 5 156 21 180 1.22e-26 105
MS.gene067200.t1 MTR_1g108780 25.850 294 164 9 24 280 12 288 1.94e-24 104
MS.gene067200.t1 MTR_1g035510 31.222 221 122 8 25 223 2 214 4.99e-24 99.0
MS.gene067200.t1 MTR_1g035520 27.597 308 158 11 25 280 88 382 3.61e-23 99.8
MS.gene067200.t1 MTR_6g043890 26.897 290 177 8 9 272 15 295 9.07e-23 98.2
MS.gene067200.t1 MTR_7g050590 26.280 293 163 7 25 280 2 278 1.01e-22 97.1
MS.gene067200.t1 MTR_1g035470 39.496 119 67 3 25 141 2 117 1.48e-21 90.1
MS.gene067200.t1 MTR_3g061320 25.087 287 186 9 6 280 9 278 5.41e-21 92.0
MS.gene067200.t1 MTR_3g061370 25.436 287 184 8 9 280 9 280 6.06e-21 92.0
MS.gene067200.t1 MTR_3g061310 25.862 290 186 8 6 280 9 284 8.43e-21 91.7
MS.gene067200.t1 MTR_3g061340 25.862 290 175 8 6 280 9 273 1.27e-20 90.9
MS.gene067200.t1 MTR_3g061350 25.517 290 186 8 6 280 9 283 1.32e-20 90.9
MS.gene067200.t1 MTR_3g061290 31.034 174 108 4 6 176 9 173 4.99e-20 87.4
MS.gene067200.t1 MTR_4g119990 25.000 308 183 10 9 280 15 310 2.33e-19 89.0
MS.gene067200.t1 MTR_3g061330 27.103 214 131 5 6 204 9 212 1.18e-18 84.7
MS.gene067200.t1 MTR_1g035460 25.753 299 164 10 25 280 2 285 1.67e-18 86.7
MS.gene067200.t1 MTR_7g050640 40.659 91 52 1 8 96 12 102 1.01e-14 70.5
MS.gene067200.t1 MTR_3g005490 23.050 282 178 8 7 286 19 263 2.53e-13 69.7
MS.gene067200.t1 MTR_3g005480 21.908 283 181 8 7 286 19 264 5.32e-12 65.9
MS.gene067200.t1 MTR_1g035440 34.653 101 63 2 8 105 14 114 7.93e-12 65.1
MS.gene067200.t1 MTR_5g070440 21.277 282 192 7 7 286 19 272 1.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGCAGATGACCCTTTA+AGG 0.106528 1.2:+20632520 None:intergenic
GTGCTCAACAGGAAATATTT+TGG 0.162791 1.2:-20633248 MS.gene067200:CDS
AAAATCTTAACCTTAAAATA+TGG 0.178478 1.2:+20633126 None:intergenic
TTCTCTTGTGATGATAATAT+TGG 0.229108 1.2:-20632159 MS.gene067200:CDS
AGAAATTTGTGGAGAAATAT+TGG 0.241294 1.2:-20633311 MS.gene067200:CDS
ACTATCTTCAAGAACTCTTT+TGG 0.257878 1.2:+20633601 None:intergenic
TTTGGGAGTCTAAGAATTAC+TGG 0.267570 1.2:+20633273 None:intergenic
TATTTGAATGAGAACCTTAA+AGG 0.282945 1.2:-20632534 MS.gene067200:CDS
AGTCTAAGAATTACTGGATT+TGG 0.299817 1.2:+20633279 None:intergenic
ATATTTGGTTGAATAGAAAC+TGG 0.315155 1.2:-20633209 MS.gene067200:CDS
ATATTTCTCCACAAATTTCT+TGG 0.318034 1.2:+20633314 None:intergenic
AACCTCATCTTCACTTTCAT+TGG 0.328993 1.2:+20632477 None:intergenic
TGGAGCGTGACGGTGATATT+TGG 0.342752 1.2:-20633224 MS.gene067200:CDS
TCTCTTGTGATGATAATATT+GGG 0.371752 1.2:-20632158 MS.gene067200:CDS
ATTTCCTGTTGAGCACCATT+TGG 0.373513 1.2:+20633255 None:intergenic
ACTCCCAAATGGTGCTCAAC+AGG 0.399322 1.2:-20633259 MS.gene067200:CDS
TTTGGCTTGGGTAATAGTTA+TGG 0.402099 1.2:+20632326 None:intergenic
TATTTCTCCACAAATTTCTT+GGG 0.405795 1.2:+20633315 None:intergenic
TCATCTGCAAGCATTAGATT+TGG 0.410439 1.2:-20632510 MS.gene067200:CDS
AAATTCGTGCACTTCACAAA+TGG 0.410548 1.2:-20631467 MS.gene067200:CDS
GAAGCATTGAAGGAAGTTCT+AGG 0.410962 1.2:-20632128 MS.gene067200:CDS
TTTCCTGTTGAGCACCATTT+GGG 0.415520 1.2:+20633256 None:intergenic
AATTCGTGCACTTCACAAAT+GGG 0.426839 1.2:-20631466 MS.gene067200:CDS
GACAATTCAAGTTCAAAACT+TGG 0.430631 1.2:+20632757 None:intergenic
GGGAAGAGAAGAAGCATTGA+AGG 0.436426 1.2:-20632138 MS.gene067200:CDS
ATTTGAATGAGAACCTTAAA+GGG 0.440321 1.2:-20632533 MS.gene067200:CDS
AAATCTTAACCTTAAAATAT+GGG 0.446492 1.2:+20633127 None:intergenic
TTATGCCCATGGCTATACTT+TGG 0.450174 1.2:-20632728 MS.gene067200:intron
GAACAATGACAAGGTTATGA+AGG 0.451012 1.2:-20632189 MS.gene067200:intron
GAGGGTTCCCAAGAAATTTG+TGG 0.458170 1.2:-20633322 MS.gene067200:CDS
TGTGTTTCAGCAGACTTAGA+AGG 0.481816 1.2:-20631673 MS.gene067200:intron
TTTAACATCATTAATCCTAC+CGG 0.505864 1.2:+20631598 None:intergenic
AGCAAATGGCTTCCAACCAT+CGG 0.516054 1.2:+20632419 None:intergenic
TACTTTGCAGGTAGTAAGAG+AGG 0.516159 1.2:-20632841 MS.gene067200:intron
GACTAACCAAAGTATAGCCA+TGG 0.533080 1.2:+20632722 None:intergenic
AAGAGACATAAAGAGTGTCA+TGG 0.537371 1.2:-20631491 MS.gene067200:CDS
TTCATAGATGAAAGTTGTGA+AGG 0.547031 1.2:-20633060 MS.gene067200:CDS
AGAGACATAAAGAGTGTCAT+GGG 0.549903 1.2:-20631490 MS.gene067200:CDS
GAGAGGAGGCATGATTAAGA+AGG 0.553426 1.2:-20632824 MS.gene067200:CDS
ATAGTTATGGTGAATGAAAG+TGG 0.559902 1.2:+20632339 None:intergenic
GTAATTCTTAGACTCCCAAA+TGG 0.561023 1.2:-20633270 MS.gene067200:CDS
CTTAGAAGGTGGTAATGTGA+TGG 0.576917 1.2:-20631659 MS.gene067200:CDS
TATTTGGTTGAATAGAAACT+GGG 0.581010 1.2:-20633208 MS.gene067200:CDS
TGCCAATGAAAGTGAAGATG+AGG 0.581196 1.2:-20632479 MS.gene067200:CDS
ACACGAATCTCAACTGTGAT+CGG 0.582807 1.2:+20631634 None:intergenic
TTTGCAAAGTCTCTAAAACA+TGG 0.586392 1.2:-20633180 MS.gene067200:CDS
TATGCTCTTGAAAAGTCACT+TGG 0.596669 1.2:+20632555 None:intergenic
CATGGTTTGTGACCGATGGT+TGG 0.603719 1.2:-20632431 MS.gene067200:CDS
ATAGTGTTGGCACATCTCAA+AGG 0.615505 1.2:-20632987 MS.gene067200:CDS
GACAATGTTACTAATAGTGT+TGG 0.615695 1.2:-20633000 MS.gene067200:CDS
ATAACTATTACCCAAGCCAA+AGG 0.622711 1.2:-20632324 MS.gene067200:intron
TTGTCACAAACTTATGCCCA+TGG 0.622925 1.2:-20632739 MS.gene067200:CDS
TTCGTGCACTTCACAAATGG+GGG 0.624197 1.2:-20631464 MS.gene067200:CDS
AGAACATGGTTTGTGACCGA+TGG 0.624732 1.2:-20632435 MS.gene067200:CDS
GTTTCAGCAGACTTAGAAGG+TGG 0.625758 1.2:-20631670 MS.gene067200:intron
CATCATTAATCCTACCGGGT+AGG 0.628692 1.2:+20631603 None:intergenic
ATTCGTGCACTTCACAAATG+GGG 0.631922 1.2:-20631465 MS.gene067200:CDS
ACTAACCAAAGTATAGCCAT+GGG 0.645588 1.2:+20632723 None:intergenic
TTTGCAGGTAGTAAGAGAGG+AGG 0.649019 1.2:-20632838 MS.gene067200:intron
TTAACATCATTAATCCTACC+GGG 0.653073 1.2:+20631599 None:intergenic
ATGTCAAGAATAATAGAACA+TGG 0.663248 1.2:-20632449 MS.gene067200:CDS
TCGTGTGAACTCTACCTACC+CGG 0.663506 1.2:-20631617 MS.gene067200:CDS
CAAAATCATGAACTACACAA+TGG 0.670560 1.2:-20633577 MS.gene067200:CDS
GTGAACTCTACCTACCCGGT+AGG 0.690690 1.2:-20631613 MS.gene067200:CDS
AGTACATACTTGAGAGAACG+TGG 0.707754 1.2:+20632100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATTTATAATATATGA+GGG + chr1.2:20633161-20633180 None:intergenic 10.0%
!! TAAACAATTTATAATATATG+AGG + chr1.2:20633162-20633181 None:intergenic 10.0%
!!! AGTTTTTAGAAATTTTAAAT+AGG - chr1.2:20632993-20633012 MS.gene067200:CDS 10.0%
!!! ATCTATGAATATTTTTATAT+CGG + chr1.2:20631992-20632011 None:intergenic 10.0%
!! AAAAAATATAACTTACAAGT+TGG - chr1.2:20632667-20632686 MS.gene067200:intron 15.0%
!! AAAATCTTAACCTTAAAATA+TGG + chr1.2:20631940-20631959 None:intergenic 15.0%
!! AAATCTTAACCTTAAAATAT+GGG + chr1.2:20631939-20631958 None:intergenic 15.0%
!! ATAAGTATAATTAATGCAAA+GGG + chr1.2:20631699-20631718 None:intergenic 15.0%
!! GTTATTTAATTATAGTTGAA+AGG + chr1.2:20631620-20631639 None:intergenic 15.0%
!!! AAGTTATATTTTTTAGCAAA+TGG + chr1.2:20632661-20632680 None:intergenic 15.0%
!!! ATTAATAACAAAAGTATAGT+TGG + chr1.2:20631646-20631665 None:intergenic 15.0%
!!! TATAAGTTACTAGTAAATTT+TGG - chr1.2:20632440-20632459 MS.gene067200:CDS 15.0%
!!! TATTTTAAGGTTAAGATTTT+TGG - chr1.2:20631940-20631959 MS.gene067200:intron 15.0%
!!! TCTTGAACTAATTTTTTAAT+TGG + chr1.2:20633197-20633216 None:intergenic 15.0%
!!! TGTTCTAAATTATTAGTTAT+TGG - chr1.2:20632402-20632421 MS.gene067200:CDS 15.0%
!!! TTTTATTTTTTTTACTTTGC+AGG - chr1.2:20632210-20632229 MS.gene067200:intron 15.0%
!! AAGATATGTACACATTAAAA+GGG + chr1.2:20633312-20633331 None:intergenic 20.0%
!! GATAAGTATAATTAATGCAA+AGG + chr1.2:20631700-20631719 None:intergenic 20.0%
!!! ATCTATTTTAGCCATTTATA+AGG + chr1.2:20632190-20632209 None:intergenic 20.0%
!!! GCTTTAGTTTTCAAATATTT+AGG - chr1.2:20631910-20631929 MS.gene067200:intron 20.0%
!!! TTAGTTTTCAAATATTTAGG+TGG - chr1.2:20631913-20631932 MS.gene067200:intron 20.0%
!!! TTGTTATTCTACCTTATAAA+TGG - chr1.2:20632176-20632195 MS.gene067200:CDS 20.0%
! AAATGATTATCTGTTTCAGA+GGG - chr1.2:20631723-20631742 MS.gene067200:intron 25.0%
! AAGTAAGAAAGAAAAACCTT+TGG + chr1.2:20632758-20632777 None:intergenic 25.0%
! AGAAATTTGTGGAGAAATAT+TGG - chr1.2:20631752-20631771 MS.gene067200:intron 25.0%
! AGGATTAATGATGTTAAATG+TGG - chr1.2:20633470-20633489 MS.gene067200:intron 25.0%
! ATATTTCTCCACAAATTTCT+TGG + chr1.2:20631752-20631771 None:intergenic 25.0%
! ATATTTGGTTGAATAGAAAC+TGG - chr1.2:20631854-20631873 MS.gene067200:intron 25.0%
! ATGTCAAGAATAATAGAACA+TGG - chr1.2:20632614-20632633 MS.gene067200:intron 25.0%
! ATTTATAATATATGAGGGAG+AGG + chr1.2:20633156-20633175 None:intergenic 25.0%
! ATTTGAATGAGAACCTTAAA+GGG - chr1.2:20632530-20632549 MS.gene067200:CDS 25.0%
! CAAGATATGTACACATTAAA+AGG + chr1.2:20633313-20633332 None:intergenic 25.0%
! CTGAAACAGATAATCATTTA+TGG + chr1.2:20631722-20631741 None:intergenic 25.0%
! TAAACCTTGAATTGAAATAG+AGG - chr1.2:20632482-20632501 MS.gene067200:CDS 25.0%
! TAAATGATTATCTGTTTCAG+AGG - chr1.2:20631722-20631741 MS.gene067200:intron 25.0%
! TATTTCTCCACAAATTTCTT+GGG + chr1.2:20631751-20631770 None:intergenic 25.0%
! TATTTGAATGAGAACCTTAA+AGG - chr1.2:20632529-20632548 MS.gene067200:CDS 25.0%
! TATTTGGTTGAATAGAAACT+GGG - chr1.2:20631855-20631874 MS.gene067200:intron 25.0%
! TCTCTTGTGATGATAATATT+GGG - chr1.2:20632905-20632924 MS.gene067200:intron 25.0%
! TTAAAATCTGTAAACAGATC+AGG - chr1.2:20633281-20633300 MS.gene067200:CDS 25.0%
! TTCTCTTGTGATGATAATAT+TGG - chr1.2:20632904-20632923 MS.gene067200:intron 25.0%
! TTTAACATCATTAATCCTAC+CGG + chr1.2:20633468-20633487 None:intergenic 25.0%
!! GTTTTTCTTTCTTACTTTCT+CGG - chr1.2:20632761-20632780 MS.gene067200:CDS 25.0%
AATTCCTTTGAACAATGACA+AGG - chr1.2:20632865-20632884 MS.gene067200:intron 30.0%
ACATCTCAAAGGAGAAAAAA+TGG - chr1.2:20632087-20632106 MS.gene067200:intron 30.0%
AGTCTAAGAATTACTGGATT+TGG + chr1.2:20631787-20631806 None:intergenic 30.0%
ATAACCTTGTCATTGTTCAA+AGG + chr1.2:20632872-20632891 None:intergenic 30.0%
ATAGTTATGGTGAATGAAAG+TGG + chr1.2:20632727-20632746 None:intergenic 30.0%
ATATGTACACATTAAAAGGG+AGG + chr1.2:20633309-20633328 None:intergenic 30.0%
CAAAATCATGAACTACACAA+TGG - chr1.2:20631486-20631505 MS.gene067200:CDS 30.0%
CAATTGATGTTAAGCAAATG+CGG + chr1.2:20632836-20632855 None:intergenic 30.0%
GACAATGTTACTAATAGTGT+TGG - chr1.2:20632063-20632082 MS.gene067200:intron 30.0%
GTATCCTCTATTTCAATTCA+AGG + chr1.2:20632489-20632508 None:intergenic 30.0%
TTAACATCATTAATCCTACC+GGG + chr1.2:20633467-20633486 None:intergenic 30.0%
TTCATAGATGAAAGTTGTGA+AGG - chr1.2:20632003-20632022 MS.gene067200:intron 30.0%
TTGTCATTGTTCAAAGGAAT+TGG + chr1.2:20632866-20632885 None:intergenic 30.0%
! ACTATCTTCAAGAACTCTTT+TGG + chr1.2:20631465-20631484 None:intergenic 30.0%
! GACAATTCAAGTTCAAAACT+TGG + chr1.2:20632309-20632328 None:intergenic 30.0%
! TGCTCAACAGGAAATATTTT+GGG - chr1.2:20631816-20631835 MS.gene067200:intron 30.0%
!! TTTGCAAAGTCTCTAAAACA+TGG - chr1.2:20631883-20631902 MS.gene067200:intron 30.0%
!!! GATTTTTGGTCACAATACAT+TGG - chr1.2:20631954-20631973 MS.gene067200:intron 30.0%
AAATTCGTGCACTTCACAAA+TGG - chr1.2:20633596-20633615 MS.gene067200:CDS 35.0%
AACCTCATCTTCACTTTCAT+TGG + chr1.2:20632589-20632608 None:intergenic 35.0%
AATTCGTGCACTTCACAAAT+GGG - chr1.2:20633597-20633616 MS.gene067200:CDS 35.0%
ACTAACCAAAGTATAGCCAT+GGG + chr1.2:20632343-20632362 None:intergenic 35.0%
AGAAAGAAAAACCTTTGGCT+TGG + chr1.2:20632753-20632772 None:intergenic 35.0%
ATAACTATTACCCAAGCCAA+AGG - chr1.2:20632739-20632758 MS.gene067200:CDS 35.0%
GAACAATGACAAGGTTATGA+AGG - chr1.2:20632874-20632893 MS.gene067200:intron 35.0%
GTAATTCTTAGACTCCCAAA+TGG - chr1.2:20631793-20631812 MS.gene067200:intron 35.0%
TATGCTCTTGAAAAGTCACT+TGG + chr1.2:20632511-20632530 None:intergenic 35.0%
TCATCTGCAAGCATTAGATT+TGG - chr1.2:20632553-20632572 MS.gene067200:CDS 35.0%
TTTGGGAGTCTAAGAATTAC+TGG + chr1.2:20631793-20631812 None:intergenic 35.0%
! GAAAGAAAAACCTTTGGCTT+GGG + chr1.2:20632752-20632771 None:intergenic 35.0%
! GTGCTCAACAGGAAATATTT+TGG - chr1.2:20631815-20631834 MS.gene067200:intron 35.0%
! TTTAGGTGGCCCATATTTTA+AGG - chr1.2:20631927-20631946 MS.gene067200:intron 35.0%
!! AAGAGACATAAAGAGTGTCA+TGG - chr1.2:20633572-20633591 MS.gene067200:CDS 35.0%
!! AGAGACATAAAGAGTGTCAT+GGG - chr1.2:20633573-20633592 MS.gene067200:CDS 35.0%
!! TCAACAGGAAATATTTTGGG+TGG - chr1.2:20631819-20631838 MS.gene067200:intron 35.0%
!! TTTGGCTTGGGTAATAGTTA+TGG + chr1.2:20632740-20632759 None:intergenic 35.0%
ACACGAATCTCAACTGTGAT+CGG + chr1.2:20633432-20633451 None:intergenic 40.0%
AGTACATACTTGAGAGAACG+TGG + chr1.2:20632966-20632985 None:intergenic 40.0%
ATTCGTGCACTTCACAAATG+GGG - chr1.2:20633598-20633617 MS.gene067200:CDS 40.0%
ATTTCCTGTTGAGCACCATT+TGG + chr1.2:20631811-20631830 None:intergenic 40.0%
GACTAACCAAAGTATAGCCA+TGG + chr1.2:20632344-20632363 None:intergenic 40.0%
TACTTTGCAGGTAGTAAGAG+AGG - chr1.2:20632222-20632241 MS.gene067200:intron 40.0%
TGCCAATGAAAGTGAAGATG+AGG - chr1.2:20632584-20632603 MS.gene067200:intron 40.0%
TGTGTTTCAGCAGACTTAGA+AGG - chr1.2:20633390-20633409 MS.gene067200:intron 40.0%
TTATGCCCATGGCTATACTT+TGG - chr1.2:20632335-20632354 MS.gene067200:CDS 40.0%
TTGTCACAAACTTATGCCCA+TGG - chr1.2:20632324-20632343 MS.gene067200:intron 40.0%
TTTCCTGTTGAGCACCATTT+GGG + chr1.2:20631810-20631829 None:intergenic 40.0%
! CTTAGAAGGTGGTAATGTGA+TGG - chr1.2:20633404-20633423 MS.gene067200:intron 40.0%
!! ATAGTGTTGGCACATCTCAA+AGG - chr1.2:20632076-20632095 MS.gene067200:intron 40.0%
!! GAAGCATTGAAGGAAGTTCT+AGG - chr1.2:20632935-20632954 MS.gene067200:intron 40.0%
AGCAAATGGCTTCCAACCAT+CGG + chr1.2:20632647-20632666 None:intergenic 45.0%
CATCATTAATCCTACCGGGT+AGG + chr1.2:20633463-20633482 None:intergenic 45.0%
GAGGGTTCCCAAGAAATTTG+TGG - chr1.2:20631741-20631760 MS.gene067200:intron 45.0%
GTTTCAGCAGACTTAGAAGG+TGG - chr1.2:20633393-20633412 MS.gene067200:intron 45.0%
TCACAAATGGGGGAAAATCG+TGG - chr1.2:20633609-20633628 MS.gene067200:CDS 45.0%
TGCTTGCAGATGACCCTTTA+AGG + chr1.2:20632546-20632565 None:intergenic 45.0%
TTCGTGCACTTCACAAATGG+GGG - chr1.2:20633599-20633618 MS.gene067200:CDS 45.0%
TTTGCAGGTAGTAAGAGAGG+AGG - chr1.2:20632225-20632244 MS.gene067200:intron 45.0%
! AGAACATGGTTTGTGACCGA+TGG - chr1.2:20632628-20632647 MS.gene067200:intron 45.0%
! GAGAGGAGGCATGATTAAGA+AGG - chr1.2:20632239-20632258 MS.gene067200:intron 45.0%
!! ATATTTTGGGTGGAGCGTGA+CGG - chr1.2:20631829-20631848 MS.gene067200:intron 45.0%
!! GGGAAGAGAAGAAGCATTGA+AGG - chr1.2:20632925-20632944 MS.gene067200:intron 45.0%
!! AAAATTAAAATATATAATCT+TGG + chr1.2:20633371-20633390 None:intergenic 5.0%
!!! ATTTTCAAAAAATTATAATT+AGG - chr1.2:20633048-20633067 MS.gene067200:CDS 5.0%
!!! TAGTTTTTTTTATTTTATTT+CGG - chr1.2:20632153-20632172 MS.gene067200:CDS 5.0%
ACTCCCAAATGGTGCTCAAC+AGG - chr1.2:20631804-20631823 MS.gene067200:intron 50.0%
TCGTGTGAACTCTACCTACC+CGG - chr1.2:20633446-20633465 MS.gene067200:intron 50.0%
TGGAGCGTGACGGTGATATT+TGG - chr1.2:20631839-20631858 MS.gene067200:intron 50.0%
! CATGGTTTGTGACCGATGGT+TGG - chr1.2:20632632-20632651 MS.gene067200:intron 50.0%
GTGAACTCTACCTACCCGGT+AGG - chr1.2:20633450-20633469 MS.gene067200:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 20631447 20633638 20631447 ID=MS.gene067200
chr1.2 mRNA 20631447 20633638 20631447 ID=MS.gene067200.t1;Parent=MS.gene067200
chr1.2 exon 20633570 20633638 20633570 ID=MS.gene067200.t1.exon1;Parent=MS.gene067200.t1
chr1.2 CDS 20633570 20633638 20633570 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20632944 20633343 20632944 ID=MS.gene067200.t1.exon2;Parent=MS.gene067200.t1
chr1.2 CDS 20632944 20633343 20632944 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20632729 20632853 20632729 ID=MS.gene067200.t1.exon3;Parent=MS.gene067200.t1
chr1.2 CDS 20632729 20632853 20632729 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20632325 20632583 20632325 ID=MS.gene067200.t1.exon4;Parent=MS.gene067200.t1
chr1.2 CDS 20632325 20632583 20632325 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20632109 20632198 20632109 ID=MS.gene067200.t1.exon5;Parent=MS.gene067200.t1
chr1.2 CDS 20632109 20632198 20632109 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20631604 20631685 20631604 ID=MS.gene067200.t1.exon6;Parent=MS.gene067200.t1
chr1.2 CDS 20631604 20631685 20631604 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
chr1.2 exon 20631447 20631534 20631447 ID=MS.gene067200.t1.exon7;Parent=MS.gene067200.t1
chr1.2 CDS 20631447 20631534 20631447 ID=cds.MS.gene067200.t1;Parent=MS.gene067200.t1
Gene Sequence

>MS.gene067200

ATGTCATTGCATCATCCAAAAGAGTTCTTGAAGATAGTTCAAAATCATGAACTACACAATGGAGAGCTTGTAAGCATATTATAAAATTACATTCGATAGAAATTGCATGTTGTGTATTTTGTTGCATGTATACTTAATTTATAAATTAAGTATACATGCAACTAATTATTCCTTTCAACTATAATTAAATAACAATCCAACTATACTTTTGTTATTAATCTTTATAGATTGTCTATAAAGTTTCTTCTTCCCTTTGCATTAATTATACTTATCCATAAATGATTATCTGTTTCAGAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAGAATACCAAATCCAGTAATTCTTAGACTCCCAAATGGTGCTCAACAGGAAATATTTTGGGTGGAGCGTGACGGTGATATTTGGTTGAATAGAAACTGGGAAAATTTTGCAAAGTCTCTAAAACATGGATATGCTTTAGTTTTCAAATATTTAGGTGGCCCATATTTTAAGGTTAAGATTTTTGGTCACAATACATTGGAAAAAGACTATTCCGATATAAAAATATTCATAGATGAAAGTTGTGAAGGTAGAGAAGAAGTTCAAGAAGTTGTTGAACTGAGTGATGACAATGTTACTAATAGTGTTGGCACATCTCAAAGGAGAAAAAATGGCAAGAGAAAAATTATTCAGCAAAAAATCACAAGTGAGTTCATCTAGTTTTTTTTATTTTATTTCGGTTGTTATTCTACCTTATAAATGGCTAAAATAGATTTTTATTTTTTTTACTTTGCAGGTAGTAAGAGAGGAGGCATGATTAAGAAGGCTAAAAAATGCTCAACAATTAGTGAGAGAGAAAATAATGAAAATCCAAGTTTTGAACTTGAATTGTCACAAACTTATGCCCATGGCTATACTTTGGTTAGTCTACTATAAAACATCAAATATTTTTTTCGAAGTAACTTATGTTCTAAATTATTAGTTATTGGCTATTTCGTATAAATTATAAGTTACTAGTAAATTTTGGCTTTAATTAATATTTCTAATAAACCTTGAATTGAAATAGAGGATACCAAGTGACTTTTCAAGAGCATATTTGAATGAGAACCTTAAAGGGTCATCTGCAAGCATTAGATTTGGCGAGAACATGCCAATGAAAGTGAAGATGAGGTTTCAAGATGTCAAGAATAATAGAACATGGTTTGTGACCGATGGTTGGAAGCCATTTGCTAAAAAATATAACTTACAAGTTGGCAATGTATGTAAATTTGTGATGACTCAACTTCAGCCACTTTCATTCACCATAACTATTACCCAAGCCAAAGGTTTTTCTTTCTTACTTTCTCGGTTTATTTATTGTTATTTAAAAAATAATAATTTCATTGACATATGATTCACCGCATTTGCTTAACATCAATTGATTTTCTCCAATTCCTTTGAACAATGACAAGGTTATGAAGGAATGATCTTCTCTTGTGATGATAATATTGGGAAGAGAAGAAGCATTGAAGGAAGTTCTAGGAGCTGCCACGTTCTCTCAAGTATGTACTTGTTTAAAGTTTTTAGAAATTTTAAATAGGTTTTTGAATTAAATGTTATTTTAGTATCAAAAATTTTCAAAAAATTATAATTAGGTTTTCTTACATTTTTAAAATAATTCAATAACTAGTTTTGTTTTGAATTTATAATTATGATTTTGTCTCTTACAATTTATTTACCTCTCCCTCATATATTATAAATTGTTTAAAATTCAACGATCCAATTAAAAAATTAGTTCAAGAATCTATTTATTATTACAAATTATTTCTAAGTTTAGTGATTAATTACTGTTTTTTTTTCAAGAAATTAAAATCTGTAAACAGATCAGGAACCTCCCTTTTAATGTGTACATATCTTGTGTCAAAGAGACTAATGTCGACAACAATCATGTTACCAAGATTATATATTTTAATTTTGTGTTTCAGCAGACTTAGAAGGTGGTAATGTGATGGAACCGATCACAGTTGAGATTCGTGTGAACTCTACCTACCCGGTAGGATTAATGATGTTAAATGTGGCTACTATATAGATATATGTTAGAACTGTGTATAAATAATTTTTTTGTTTTATTTGCAGTATATTCACAATGAATTTTTTAAGAGACATAAAGAGTGTCATGGGAAATTCGTGCACTTCACAAATGGGGGAAAATCGTGGCATGTAA
Protein sequence

>MS.gene067200.t1

MSLHHPKEFLKIVQNHELHNGELRVPKKFVEKYWKRIPNPVILRLPNGAQQEIFWVERDGDIWLNRNWENFAKSLKHGYALVFKYLGGPYFKVKIFGHNTLEKDYSDIKIFIDESCEGREEVQEVVELSDDNVTNSVGTSQRRKNGKRKIIQQKITSSKRGGMIKKAKKCSTISERENNENPSFELELSQTYAHGYTLRIPSDFSRAYLNENLKGSSASIRFGENMPMKVKMRFQDVKNNRTWFVTDGWKPFAKKYNLQVGNVCKFVMTQLQPLSFTITITQAKGYEGMIFSCDDNIGKRRSIEGSSRSCHVLSTDLEGGNVMEPITVEIRVNSTYPVGLMIIFTMNFLRDIKSVMGNSCTSQMGENRGM