Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073650.t1 | RHN78223.1 | 78.7 | 436 | 86 | 4 | 1 | 436 | 1 | 429 | 4.70E-176 | 627.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073650.t1 | Q8L3W1 | 24.6 | 338 | 202 | 12 | 7 | 296 | 4 | 336 | 1.4e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073650.t1 | A0A396JPN4 | 78.7 | 436 | 86 | 4 | 1 | 436 | 1 | 429 | 3.4e-176 | 627.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073650.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073650.t1 | MTR_1g035570 | 73.077 | 442 | 63 | 5 | 1 | 435 | 1 | 393 | 0.0 | 604 |
| MS.gene073650.t1 | MTR_1g035490 | 73.292 | 322 | 73 | 4 | 116 | 436 | 19 | 328 | 4.58e-153 | 437 |
| MS.gene073650.t1 | MTR_1g035640 | 45.473 | 486 | 193 | 9 | 1 | 436 | 1 | 464 | 9.27e-128 | 377 |
| MS.gene073650.t1 | MTR_1g035620 | 42.058 | 447 | 208 | 11 | 1 | 435 | 1 | 408 | 1.32e-103 | 314 |
| MS.gene073650.t1 | MTR_1g050845 | 41.205 | 415 | 181 | 11 | 1 | 403 | 1 | 364 | 3.19e-85 | 278 |
| MS.gene073650.t1 | MTR_6g061070 | 36.087 | 460 | 241 | 15 | 14 | 436 | 27 | 470 | 1.96e-70 | 230 |
| MS.gene073650.t1 | MTR_1g035650 | 41.921 | 229 | 94 | 3 | 1 | 216 | 1 | 203 | 2.63e-50 | 169 |
| MS.gene073650.t1 | MTR_8g103940 | 27.669 | 459 | 284 | 16 | 14 | 436 | 48 | 494 | 2.16e-42 | 156 |
| MS.gene073650.t1 | MTR_3g098790 | 32.653 | 294 | 171 | 9 | 14 | 296 | 22 | 299 | 3.53e-35 | 133 |
| MS.gene073650.t1 | MTR_1g108780 | 25.758 | 462 | 282 | 13 | 20 | 436 | 12 | 457 | 1.34e-34 | 134 |
| MS.gene073650.t1 | MTR_5g044670 | 30.375 | 293 | 188 | 7 | 14 | 300 | 25 | 307 | 7.30e-33 | 127 |
| MS.gene073650.t1 | MTR_7g050560 | 31.208 | 298 | 175 | 8 | 9 | 296 | 13 | 290 | 2.13e-32 | 125 |
| MS.gene073650.t1 | MTR_7g050590 | 31.864 | 295 | 166 | 9 | 21 | 296 | 2 | 280 | 1.32e-31 | 122 |
| MS.gene073650.t1 | MTR_7g050710 | 30.619 | 307 | 184 | 9 | 8 | 296 | 12 | 307 | 5.42e-30 | 119 |
| MS.gene073650.t1 | MTR_7g050580 | 31.104 | 299 | 174 | 8 | 9 | 296 | 13 | 290 | 6.00e-29 | 115 |
| MS.gene073650.t1 | MTR_7g050720 | 31.481 | 324 | 168 | 12 | 9 | 296 | 10 | 315 | 1.67e-28 | 114 |
| MS.gene073650.t1 | MTR_1g035480 | 45.763 | 118 | 61 | 2 | 14 | 131 | 26 | 140 | 2.13e-28 | 110 |
| MS.gene073650.t1 | MTR_3g061350 | 27.397 | 292 | 186 | 7 | 9 | 294 | 12 | 283 | 1.94e-27 | 110 |
| MS.gene073650.t1 | MTR_3g061310 | 26.460 | 291 | 191 | 9 | 9 | 294 | 12 | 284 | 8.59e-27 | 109 |
| MS.gene073650.t1 | MTR_1g033740 | 34.146 | 164 | 91 | 3 | 14 | 177 | 31 | 177 | 1.14e-25 | 103 |
| MS.gene073650.t1 | MTR_1g035510 | 33.186 | 226 | 131 | 9 | 21 | 239 | 2 | 214 | 1.58e-25 | 103 |
| MS.gene073650.t1 | MTR_3g061340 | 26.280 | 293 | 178 | 12 | 9 | 294 | 12 | 273 | 3.01e-25 | 104 |
| MS.gene073650.t1 | MTR_1g035500 | 43.220 | 118 | 64 | 2 | 14 | 131 | 34 | 148 | 1.26e-24 | 100 |
| MS.gene073650.t1 | MTR_3g061370 | 26.351 | 296 | 184 | 8 | 9 | 294 | 9 | 280 | 3.01e-24 | 102 |
| MS.gene073650.t1 | MTR_3g061320 | 26.117 | 291 | 186 | 10 | 9 | 294 | 12 | 278 | 9.93e-24 | 100 |
| MS.gene073650.t1 | MTR_4g119990 | 29.373 | 303 | 190 | 11 | 9 | 294 | 15 | 310 | 1.04e-23 | 102 |
| MS.gene073650.t1 | MTR_1g035460 | 25.413 | 303 | 196 | 8 | 21 | 303 | 2 | 294 | 1.05e-22 | 99.8 |
| MS.gene073650.t1 | MTR_1g035470 | 40.187 | 107 | 61 | 2 | 21 | 127 | 2 | 105 | 4.17e-21 | 89.4 |
| MS.gene073650.t1 | MTR_3g061330 | 26.941 | 219 | 137 | 5 | 9 | 222 | 12 | 212 | 5.58e-21 | 92.0 |
| MS.gene073650.t1 | MTR_6g043890 | 27.208 | 283 | 179 | 9 | 13 | 282 | 23 | 291 | 7.16e-21 | 93.6 |
| MS.gene073650.t1 | MTR_1g035520 | 26.333 | 300 | 190 | 7 | 21 | 294 | 88 | 382 | 2.64e-20 | 92.4 |
| MS.gene073650.t1 | MTR_1g035520 | 35.043 | 117 | 72 | 2 | 324 | 436 | 267 | 383 | 3.15e-12 | 68.2 |
| MS.gene073650.t1 | MTR_3g061290 | 31.818 | 154 | 93 | 4 | 9 | 158 | 12 | 157 | 6.05e-19 | 85.1 |
| MS.gene073650.t1 | MTR_1g034210 | 23.955 | 359 | 201 | 13 | 6 | 296 | 4 | 358 | 1.23e-14 | 75.5 |
| MS.gene073650.t1 | MTR_7g050640 | 42.202 | 109 | 53 | 4 | 5 | 103 | 7 | 115 | 1.76e-13 | 67.0 |
| MS.gene073650.t1 | MTR_4g068320 | 35.644 | 101 | 59 | 2 | 7 | 101 | 4 | 104 | 2.75e-12 | 68.6 |
| MS.gene073650.t1 | MTR_3g005480 | 21.769 | 294 | 158 | 8 | 14 | 297 | 30 | 261 | 7.67e-12 | 65.9 |
| MS.gene073650.t1 | MTR_3g005490 | 21.160 | 293 | 164 | 7 | 14 | 299 | 30 | 262 | 1.94e-11 | 64.7 |
| MS.gene073650.t1 | MTR_1g034240 | 32.432 | 111 | 68 | 3 | 7 | 110 | 5 | 115 | 3.63e-11 | 65.1 |
| MS.gene073650.t1 | MTR_1g035440 | 35.165 | 91 | 56 | 2 | 14 | 101 | 24 | 114 | 8.63e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073650.t1 | AT3G18990 | 26.686 | 341 | 197 | 13 | 7 | 299 | 4 | 339 | 6.79e-22 | 97.1 |
| MS.gene073650.t1 | AT3G18990 | 26.844 | 339 | 195 | 13 | 7 | 297 | 4 | 337 | 1.59e-21 | 95.5 |
Find 76 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1.1:+35243198 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1.1:-35243113 | MS.gene073650:CDS |
| TATTTCTCCACATATTTCTT+AGG | 0.222742 | 1.1:+35243248 | None:intergenic |
| AAATATTGTGGAATTGAAAA+TGG | 0.233869 | 1.1:-35241460 | MS.gene073650:CDS |
| CTTTGCGAATGGTTCGTTTC+CGG | 0.252300 | 1.1:+35242002 | None:intergenic |
| GCATAAAACATTCAAGGTTT+TGG | 0.259758 | 1.1:-35241630 | MS.gene073650:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1.1:-35242203 | MS.gene073650:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1.1:-35243244 | MS.gene073650:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.1:-35243157 | MS.gene073650:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1.1:+35243206 | None:intergenic |
| TTCATCAACAGATTTGATAT+TGG | 0.305884 | 1.1:+35243007 | None:intergenic |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.1:-35242342 | MS.gene073650:intron |
| CATTAACAGCTTCAGATGTT+AGG | 0.318603 | 1.1:+35242399 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.1:+35242033 | None:intergenic |
| TCCTCTCATCAATCAACTTA+AGG | 0.325864 | 1.1:+35241319 | None:intergenic |
| GTTTAATGTTTCAATATTGT+AGG | 0.341808 | 1.1:-35241289 | None:intergenic |
| ACATTGGAGGAACGTCTTCT+AGG | 0.346380 | 1.1:-35241814 | MS.gene073650:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1.1:+35243207 | None:intergenic |
| TTAACTTTCAAATTCATTAG+TGG | 0.350653 | 1.1:-35243083 | MS.gene073650:CDS |
| TGGCCAGAGAAAAGCAAGTA+TGG | 0.371732 | 1.1:-35242835 | MS.gene073650:CDS |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1.1:-35242202 | MS.gene073650:CDS |
| CCATTCGCAAAGAAATTACT+AGG | 0.386228 | 1.1:-35241991 | MS.gene073650:intron |
| TGGTAAGAGTGTTGCAAAGA+AGG | 0.395122 | 1.1:-35241840 | MS.gene073650:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.398912 | 1.1:+35243031 | None:intergenic |
| AATATTGTGGAATTGAAAAT+GGG | 0.408122 | 1.1:-35241459 | MS.gene073650:CDS |
| AATTATTATCAGAGTCTTTG+TGG | 0.412362 | 1.1:-35241411 | MS.gene073650:CDS |
| AAAGAAGGCAAAGTGGAGAT+TGG | 0.415515 | 1.1:-35241354 | MS.gene073650:CDS |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1.1:+35243419 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.1:-35242113 | MS.gene073650:CDS |
| GATGAAGCATAAAACATTCA+AGG | 0.432143 | 1.1:-35241636 | MS.gene073650:CDS |
| AAATGCCAAAGCAAGCTAAA+AGG | 0.432567 | 1.1:-35242866 | MS.gene073650:CDS |
| TATGACAAGGTTATAAGAAA+GGG | 0.451711 | 1.1:-35241871 | MS.gene073650:intron |
| CAAAGTAGCAATGGTGAAGA+AGG | 0.457353 | 1.1:-35242432 | MS.gene073650:CDS |
| CAAGCTAAAAGGACAAGAAA+TGG | 0.459455 | 1.1:-35242855 | MS.gene073650:CDS |
| ATCACCTGAGAATTTAGGTT+GGG | 0.466980 | 1.1:+35242800 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.1:+35242370 | None:intergenic |
| GAGGTGAGTTTGAGATATTA+TGG | 0.477793 | 1.1:-35242159 | MS.gene073650:CDS |
| CCTAGTAATTTCTTTGCGAA+TGG | 0.482285 | 1.1:+35241991 | None:intergenic |
| CTATGACAAGGTTATAAGAA+AGG | 0.497114 | 1.1:-35241872 | MS.gene073650:intron |
| CTCTTCATGACTTTCTTCTG+TGG | 0.498976 | 1.1:+35242926 | None:intergenic |
| ACCACCCAACCTAAATTCTC+AGG | 0.500168 | 1.1:-35242804 | MS.gene073650:intron |
| CCGAAGGAGTTTATGAAAAG+AGG | 0.504433 | 1.1:-35241492 | MS.gene073650:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.1:+35242371 | None:intergenic |
| AATATCAAATCTGTTGATGA+AGG | 0.508408 | 1.1:-35243005 | MS.gene073650:CDS |
| AATGTTACTATTACTCGTGC+CGG | 0.509303 | 1.1:-35242021 | MS.gene073650:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.1:+35243104 | None:intergenic |
| TTTGGTGAAGAACACAGAAC+CGG | 0.529435 | 1.1:-35241612 | MS.gene073650:intron |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.1:-35241472 | MS.gene073650:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1.1:-35243203 | MS.gene073650:CDS |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.542328 | 1.1:-35241393 | MS.gene073650:CDS |
| AGCTGAAGACACAGAAGAAG+AGG | 0.546039 | 1.1:-35242982 | MS.gene073650:CDS |
| ACCTGAGAATTTAGGTTGGG+TGG | 0.549468 | 1.1:+35242803 | None:intergenic |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1.1:-35242188 | MS.gene073650:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.555107 | 1.1:+35242237 | None:intergenic |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.1:-35242059 | MS.gene073650:CDS |
| GTATTTGCAGTGTGTACCGA+AGG | 0.559027 | 1.1:-35241508 | MS.gene073650:intron |
| AATGTGGTATGGGTGGTGGA+TGG | 0.565938 | 1.1:-35242125 | MS.gene073650:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.573667 | 1.1:-35241389 | MS.gene073650:CDS |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1.1:-35242198 | MS.gene073650:CDS |
| AATCACCTGAGAATTTAGGT+TGG | 0.582683 | 1.1:+35242799 | None:intergenic |
| TGATGACAGTTCAGATGAGG+TGG | 0.583984 | 1.1:-35242889 | MS.gene073650:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.1:+35242337 | None:intergenic |
| GAGGGTTCCTAAGAAATATG+TGG | 0.594786 | 1.1:-35243255 | MS.gene073650:CDS |
| ATTTATGAAAGAAGGCAAAG+TGG | 0.595070 | 1.1:-35241361 | MS.gene073650:CDS |
| TCCTTAAGTTGATTGATGAG+AGG | 0.601248 | 1.1:-35241320 | MS.gene073650:CDS |
| AGGTAGTAACAAAGTAGCAA+TGG | 0.603454 | 1.1:-35242441 | MS.gene073650:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.1:-35242353 | MS.gene073650:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1.1:-35242181 | MS.gene073650:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.1:-35243239 | MS.gene073650:CDS |
| GTTGCAAAGAAGGAAGACAT+TGG | 0.622416 | 1.1:-35241830 | MS.gene073650:CDS |
| GCAAAGAAGGAAGACATTGG+AGG | 0.630671 | 1.1:-35241827 | MS.gene073650:CDS |
| ATATTGTGGAATTGAAAATG+GGG | 0.634099 | 1.1:-35241458 | MS.gene073650:CDS |
| ATGACAAGGTTATAAGAAAG+GGG | 0.636145 | 1.1:-35241870 | MS.gene073650:intron |
| GCTGAAGACACAGAAGAAGA+GGG | 0.643743 | 1.1:-35242981 | MS.gene073650:CDS |
| AAGTGATGACAGTTCAGATG+AGG | 0.649994 | 1.1:-35242892 | MS.gene073650:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.650568 | 1.1:-35242178 | MS.gene073650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1.1:35241699-35241718 | None:intergenic | 10.0% |
| !!! | AAATATGCGATTTTTTTTTT+TGG | - | chr1.1:35242139-35242158 | MS.gene073650:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1.1:35241585-35241604 | MS.gene073650:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1.1:35241586-35241605 | MS.gene073650:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.1:35241547-35241566 | MS.gene073650:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1.1:35243137-35243156 | None:intergenic | 15.0% |
| !! | AAATATTGTGGAATTGAAAA+TGG | - | chr1.1:35243267-35243286 | MS.gene073650:intron | 20.0% |
| !! | AACAATGATACATAAACAAT+AGG | + | chr1.1:35241411-35241430 | None:intergenic | 20.0% |
| !! | AATATTGTGGAATTGAAAAT+GGG | - | chr1.1:35243268-35243287 | MS.gene073650:intron | 20.0% |
| !! | ACAATGATACATAAACAATA+GGG | + | chr1.1:35241410-35241429 | None:intergenic | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1.1:35242697-35242716 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.1:35241524-35241543 | MS.gene073650:intron | 20.0% |
| !! | TGGAAAAAATTTATGAAAGA+AGG | - | chr1.1:35243358-35243377 | MS.gene073650:intron | 20.0% |
| !! | TTAACTTTCAAATTCATTAG+TGG | - | chr1.1:35241644-35241663 | MS.gene073650:CDS | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.1:35241523-35241542 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.1:35241524-35241543 | None:intergenic | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.1:35241546-35241565 | MS.gene073650:intron | 20.0% |
| !!! | TATTTTAAGGTGAAGATATT+TGG | - | chr1.1:35241671-35241690 | MS.gene073650:intron | 20.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | - | chr1.1:35242262-35242281 | MS.gene073650:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.1:35241626-35241645 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1.1:35241311-35241330 | None:intergenic | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | - | chr1.1:35243316-35243335 | MS.gene073650:intron | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1.1:35241483-35241502 | MS.gene073650:CDS | 25.0% |
| ! | ATATTGTGGAATTGAAAATG+GGG | - | chr1.1:35243269-35243288 | MS.gene073650:intron | 25.0% |
| ! | GTCATAGACAAAAGAAATAA+AGG | + | chr1.1:35242842-35242861 | None:intergenic | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.1:35242359-35242378 | None:intergenic | 25.0% |
| ! | TATGACAAGGTTATAAGAAA+GGG | - | chr1.1:35242856-35242875 | MS.gene073650:CDS | 25.0% |
| ! | TATTTCTCCACATATTTCTT+AGG | + | chr1.1:35241482-35241501 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.1:35242360-35242379 | None:intergenic | 25.0% |
| ! | TTCATCAACAGATTTGATAT+TGG | + | chr1.1:35241723-35241742 | None:intergenic | 25.0% |
| !! | AATATCAAATCTGTTGATGA+AGG | - | chr1.1:35241722-35241741 | MS.gene073650:intron | 25.0% |
| !! | CAAGAAAATTTTCTTTTGGA+CGG | + | chr1.1:35242941-35242960 | None:intergenic | 25.0% |
| !! | CCAAAAGAAAATTTTCTTGA+GGG | - | chr1.1:35242942-35242961 | MS.gene073650:CDS | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1.1:35242508-35242527 | MS.gene073650:intron | 25.0% |
| !! | GTGATTTTTCTCTCTTTTTT+TGG | - | chr1.1:35241945-35241964 | MS.gene073650:intron | 25.0% |
| !! | TATTTCTTTTGTCTATGACA+AGG | - | chr1.1:35242843-35242862 | MS.gene073650:CDS | 25.0% |
| !! | TCCAAAAGAAAATTTTCTTG+AGG | - | chr1.1:35242941-35242960 | MS.gene073650:CDS | 25.0% |
| !!! | ATGCGATTTTTTTTTTTGGT+AGG | - | chr1.1:35242143-35242162 | MS.gene073650:CDS | 25.0% |
| !!! | CATTAGTGGATCATATTTTA+AGG | - | chr1.1:35241658-35241677 | MS.gene073650:intron | 25.0% |
| !!! | TACTTTTAAGAGTTATGCAA+TGG | - | chr1.1:35242033-35242052 | MS.gene073650:CDS | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | - | chr1.1:35241955-35241974 | MS.gene073650:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.1:35241550-35241569 | MS.gene073650:intron | 25.0% |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.1:35243255-35243274 | MS.gene073650:CDS | 30.0% | |
| ATGACAAGGTTATAAGAAAG+GGG | - | chr1.1:35242857-35242876 | MS.gene073650:CDS | 30.0% | |
| ATTTATGAAAGAAGGCAAAG+TGG | - | chr1.1:35243366-35243385 | MS.gene073650:intron | 30.0% | |
| CTATGACAAGGTTATAAGAA+AGG | - | chr1.1:35242855-35242874 | MS.gene073650:CDS | 30.0% | |
| GAAAAATCACCTGAGAATTT+AGG | + | chr1.1:35241935-35241954 | None:intergenic | 30.0% | |
| GATGAAGCATAAAACATTCA+AGG | - | chr1.1:35243091-35243110 | MS.gene073650:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1.1:35242525-35242544 | MS.gene073650:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.1:35241488-35241507 | MS.gene073650:CDS | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | - | chr1.1:35242524-35242543 | MS.gene073650:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.1:35241614-35241633 | MS.gene073650:CDS | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.1:35241300-35241319 | MS.gene073650:CDS | 30.0% |
| ! | CCCTCAAGAAAATTTTCTTT+TGG | + | chr1.1:35242945-35242964 | None:intergenic | 30.0% |
| ! | GCATAAAACATTCAAGGTTT+TGG | - | chr1.1:35243097-35243116 | MS.gene073650:CDS | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1.1:35242668-35242687 | MS.gene073650:intron | 30.0% |
| ! | GTTGCAATTTTATGTCTGAA+AGG | - | chr1.1:35242059-35242078 | MS.gene073650:CDS | 30.0% |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1.1:35242464-35242483 | MS.gene073650:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.1:35241542-35241561 | None:intergenic | 30.0% |
| !!! | CTGAATTTTTTTGTTGCAGA+GGG | - | chr1.1:35241454-35241473 | MS.gene073650:CDS | 30.0% |
| !!! | TCTGAATTTTTTTGTTGCAG+AGG | - | chr1.1:35241453-35241472 | MS.gene073650:CDS | 30.0% |
| AAATGCCAAAGCAAGCTAAA+AGG | - | chr1.1:35241861-35241880 | MS.gene073650:CDS | 35.0% | |
| AATCACCTGAGAATTTAGGT+TGG | + | chr1.1:35241931-35241950 | None:intergenic | 35.0% | |
| AATGTTACTATTACTCGTGC+CGG | - | chr1.1:35242706-35242725 | MS.gene073650:intron | 35.0% | |
| ACCCAGAAAAAATGTGGTAT+GGG | - | chr1.1:35242592-35242611 | MS.gene073650:intron | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.1:35242393-35242412 | None:intergenic | 35.0% | |
| AGGTAGTAACAAAGTAGCAA+TGG | - | chr1.1:35242286-35242305 | MS.gene073650:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.1:35242374-35242393 | MS.gene073650:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.1:35241532-35241551 | None:intergenic | 35.0% | |
| CAAGCTAAAAGGACAAGAAA+TGG | - | chr1.1:35241872-35241891 | MS.gene073650:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+AGG | + | chr1.1:35242331-35242350 | None:intergenic | 35.0% | |
| CCATTCGCAAAGAAATTACT+AGG | - | chr1.1:35242736-35242755 | MS.gene073650:intron | 35.0% | |
| CCTAGTAATTTCTTTGCGAA+TGG | + | chr1.1:35242739-35242758 | None:intergenic | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1.1:35242471-35242490 | None:intergenic | 35.0% | |
| TACCCAGAAAAAATGTGGTA+TGG | - | chr1.1:35242591-35242610 | MS.gene073650:intron | 35.0% | |
| TATGGTACCCAGAAAAAATG+TGG | - | chr1.1:35242586-35242605 | MS.gene073650:intron | 35.0% | |
| TCCTCTCATCAATCAACTTA+AGG | + | chr1.1:35243411-35243430 | None:intergenic | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1.1:35241570-35241589 | MS.gene073650:intron | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1.1:35242493-35242512 | None:intergenic | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1.1:35243059-35243078 | MS.gene073650:CDS | 35.0% | |
| ! | ATCACCTGAGAATTTAGGTT+GGG | + | chr1.1:35241930-35241949 | None:intergenic | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+CGG | + | chr1.1:35243238-35243257 | None:intergenic | 35.0% |
| ! | GAGGTGAGTTTGAGATATTA+TGG | - | chr1.1:35242568-35242587 | MS.gene073650:intron | 35.0% |
| ! | GTTTTATGCTTCATCACATC+AGG | + | chr1.1:35243086-35243105 | None:intergenic | 35.0% |
| ! | TATAAGAAAGGGGTCTTTTG+TGG | - | chr1.1:35242867-35242886 | MS.gene073650:CDS | 35.0% |
| !! | AATCCATACTTGCTTTTCTC+TGG | + | chr1.1:35241898-35241917 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.1:35241560-35241579 | MS.gene073650:intron | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1.1:35242539-35242558 | MS.gene073650:intron | 35.0% |
| !! | TCCTTAAGTTGATTGATGAG+AGG | - | chr1.1:35243407-35243426 | MS.gene073650:CDS | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.1:35242385-35242404 | MS.gene073650:CDS | 35.0% |
| !!! | ACCCATACCACATTTTTTCT+GGG | + | chr1.1:35242596-35242615 | None:intergenic | 35.0% |
| AAAAAATGTGGTATGGGTGG+TGG | - | chr1.1:35242598-35242617 | MS.gene073650:intron | 40.0% | |
| AAAGAAGGCAAAGTGGAGAT+TGG | - | chr1.1:35243373-35243392 | MS.gene073650:intron | 40.0% | |
| AAGTGATGACAGTTCAGATG+AGG | - | chr1.1:35241835-35241854 | MS.gene073650:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | - | chr1.1:35242266-35242285 | MS.gene073650:intron | 40.0% | |
| CAAAGTAGCAATGGTGAAGA+AGG | - | chr1.1:35242295-35242314 | MS.gene073650:intron | 40.0% | |
| CAGAAAAAATGTGGTATGGG+TGG | - | chr1.1:35242595-35242614 | MS.gene073650:intron | 40.0% | |
| CCGAAGGAGTTTATGAAAAG+AGG | - | chr1.1:35243235-35243254 | MS.gene073650:CDS | 40.0% | |
| CTCTTCATGACTTTCTTCTG+TGG | + | chr1.1:35241804-35241823 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGAAATATG+TGG | - | chr1.1:35241472-35241491 | MS.gene073650:CDS | 40.0% | |
| GTTGCAAAGAAGGAAGACAT+TGG | - | chr1.1:35242897-35242916 | MS.gene073650:CDS | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1.1:35242277-35242296 | None:intergenic | 40.0% | |
| TTTGGTGAAGAACACAGAAC+CGG | - | chr1.1:35243115-35243134 | MS.gene073650:CDS | 40.0% | |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1.1:35242614-35242633 | MS.gene073650:intron | 40.0% |
| !! | TGGTAAGAGTGTTGCAAAGA+AGG | - | chr1.1:35242887-35242906 | MS.gene073650:CDS | 40.0% |
| !!! | CACCCATACCACATTTTTTC+TGG | + | chr1.1:35242597-35242616 | None:intergenic | 40.0% |
| !!! | CTTGTCCTTTTAGCTTGCTT+TGG | + | chr1.1:35241869-35241888 | None:intergenic | 40.0% |
| ACATTGGAGGAACGTCTTCT+AGG | - | chr1.1:35242913-35242932 | MS.gene073650:CDS | 45.0% | |
| ACCACCCAACCTAAATTCTC+AGG | - | chr1.1:35241923-35241942 | MS.gene073650:intron | 45.0% | |
| AGCTGAAGACACAGAAGAAG+AGG | - | chr1.1:35241745-35241764 | MS.gene073650:intron | 45.0% | |
| CAGGACCTTCTGTACAATAC+AGG | + | chr1.1:35243067-35243086 | None:intergenic | 45.0% | |
| CTTTGCGAATGGTTCGTTTC+CGG | + | chr1.1:35242728-35242747 | None:intergenic | 45.0% | |
| GCAAAGAAGGAAGACATTGG+AGG | - | chr1.1:35242900-35242919 | MS.gene073650:CDS | 45.0% | |
| GCTGAAGACACAGAAGAAGA+GGG | - | chr1.1:35241746-35241765 | MS.gene073650:intron | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | - | chr1.1:35243338-35243357 | MS.gene073650:intron | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1.1:35242529-35242548 | MS.gene073650:intron | 45.0% | |
| GTATTTGCAGTGTGTACCGA+AGG | - | chr1.1:35243219-35243238 | MS.gene073650:CDS | 45.0% | |
| TGATGACAGTTCAGATGAGG+TGG | - | chr1.1:35241838-35241857 | MS.gene073650:CDS | 45.0% | |
| TGGCCAGAGAAAAGCAAGTA+TGG | - | chr1.1:35241892-35241911 | MS.gene073650:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | - | chr1.1:35243334-35243353 | MS.gene073650:intron | 45.0% | |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1.1:35242549-35242568 | MS.gene073650:intron | 45.0% |
| !! | ACCTGAGAATTTAGGTTGGG+TGG | + | chr1.1:35241927-35241946 | None:intergenic | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1.1:35242546-35242565 | MS.gene073650:intron | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | - | chr1.1:35242193-35242212 | MS.gene073650:CDS | 5.0% |
| GTGAAGAACACAGAACCGGT+AGG | - | chr1.1:35243119-35243138 | MS.gene073650:CDS | 50.0% | |
| !! | AATGTGGTATGGGTGGTGGA+TGG | - | chr1.1:35242602-35242621 | MS.gene073650:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 35241290 | 35243459 | 35241290 | ID=MS.gene073650 |
| chr1.1 | mRNA | 35241290 | 35243459 | 35241290 | ID=MS.gene073650.t1;Parent=MS.gene073650 |
| chr1.1 | exon | 35243403 | 35243459 | 35243403 | ID=MS.gene073650.t1.exon1;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35243403 | 35243459 | 35243403 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35242805 | 35243276 | 35242805 | ID=MS.gene073650.t1.exon2;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35242805 | 35243276 | 35242805 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35242343 | 35242461 | 35242343 | ID=MS.gene073650.t1.exon3;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35242343 | 35242461 | 35242343 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35241992 | 35242265 | 35241992 | ID=MS.gene073650.t1.exon4;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35241992 | 35242265 | 35241992 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35241786 | 35241884 | 35241786 | ID=MS.gene073650.t1.exon5;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35241786 | 35241884 | 35241786 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35241613 | 35241671 | 35241613 | ID=MS.gene073650.t1.exon6;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35241613 | 35241671 | 35241613 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| chr1.1 | exon | 35241290 | 35241520 | 35241290 | ID=MS.gene073650.t1.exon7;Parent=MS.gene073650.t1 |
| chr1.1 | CDS | 35241290 | 35241520 | 35241290 | ID=cds.MS.gene073650.t1;Parent=MS.gene073650.t1 |
| Gene Sequence |
| Protein sequence |
