Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052833.t1 | RHN78223.1 | 75.9 | 435 | 72 | 3 | 1 | 405 | 1 | 432 | 1.70E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052833.t1 | Q8L3W1 | 25.0 | 336 | 203 | 11 | 7 | 296 | 4 | 336 | 1.3e-14 | 82.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052833.t1 | A0A396JPN4 | 75.9 | 435 | 72 | 3 | 1 | 405 | 1 | 432 | 1.2e-167 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052833.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052833.t1 | MTR_1g035570 | 79.177 | 413 | 62 | 5 | 1 | 405 | 1 | 397 | 0.0 | 627 |
| MS.gene052833.t1 | MTR_1g035490 | 70.126 | 318 | 64 | 5 | 116 | 406 | 19 | 332 | 4.66e-141 | 405 |
| MS.gene052833.t1 | MTR_1g035640 | 45.585 | 487 | 159 | 9 | 1 | 403 | 1 | 465 | 1.15e-122 | 363 |
| MS.gene052833.t1 | MTR_1g035620 | 42.334 | 437 | 187 | 11 | 1 | 401 | 1 | 408 | 8.81e-102 | 308 |
| MS.gene052833.t1 | MTR_1g050845 | 41.337 | 404 | 162 | 11 | 1 | 369 | 1 | 364 | 1.47e-81 | 267 |
| MS.gene052833.t1 | MTR_6g061070 | 35.371 | 458 | 213 | 14 | 14 | 402 | 27 | 470 | 4.70e-68 | 223 |
| MS.gene052833.t1 | MTR_1g035650 | 42.795 | 229 | 92 | 3 | 1 | 216 | 1 | 203 | 3.85e-51 | 171 |
| MS.gene052833.t1 | MTR_3g098790 | 32.990 | 291 | 174 | 8 | 14 | 296 | 22 | 299 | 5.92e-35 | 132 |
| MS.gene052833.t1 | MTR_5g044670 | 29.693 | 293 | 190 | 6 | 14 | 300 | 25 | 307 | 3.97e-33 | 127 |
| MS.gene052833.t1 | MTR_7g050560 | 32.759 | 290 | 167 | 8 | 14 | 296 | 22 | 290 | 4.83e-33 | 126 |
| MS.gene052833.t1 | MTR_7g050590 | 32.192 | 292 | 169 | 8 | 21 | 296 | 2 | 280 | 2.57e-31 | 121 |
| MS.gene052833.t1 | MTR_7g050710 | 29.712 | 313 | 179 | 9 | 8 | 296 | 12 | 307 | 2.51e-30 | 119 |
| MS.gene052833.t1 | MTR_1g035480 | 40.854 | 164 | 78 | 4 | 14 | 177 | 26 | 170 | 2.72e-30 | 115 |
| MS.gene052833.t1 | MTR_8g103940 | 29.000 | 300 | 188 | 9 | 14 | 300 | 48 | 335 | 1.05e-29 | 120 |
| MS.gene052833.t1 | MTR_7g050720 | 32.063 | 315 | 164 | 11 | 14 | 296 | 19 | 315 | 3.28e-29 | 116 |
| MS.gene052833.t1 | MTR_3g061310 | 27.491 | 291 | 188 | 9 | 9 | 294 | 12 | 284 | 5.70e-29 | 114 |
| MS.gene052833.t1 | MTR_7g050580 | 31.379 | 290 | 171 | 7 | 14 | 296 | 22 | 290 | 7.26e-29 | 115 |
| MS.gene052833.t1 | MTR_3g061350 | 28.425 | 292 | 183 | 7 | 9 | 294 | 12 | 283 | 8.13e-29 | 114 |
| MS.gene052833.t1 | MTR_1g033740 | 39.024 | 164 | 83 | 5 | 14 | 177 | 31 | 177 | 4.58e-28 | 109 |
| MS.gene052833.t1 | MTR_1g035510 | 32.599 | 227 | 131 | 10 | 21 | 239 | 2 | 214 | 1.47e-26 | 106 |
| MS.gene052833.t1 | MTR_3g061370 | 27.703 | 296 | 180 | 8 | 9 | 294 | 9 | 280 | 7.64e-26 | 105 |
| MS.gene052833.t1 | MTR_3g061320 | 27.148 | 291 | 183 | 10 | 9 | 294 | 12 | 278 | 1.01e-25 | 105 |
| MS.gene052833.t1 | MTR_1g108780 | 29.097 | 299 | 178 | 9 | 20 | 300 | 12 | 294 | 2.09e-25 | 107 |
| MS.gene052833.t1 | MTR_4g119990 | 29.703 | 303 | 189 | 11 | 9 | 294 | 15 | 310 | 4.47e-25 | 105 |
| MS.gene052833.t1 | MTR_1g035500 | 44.068 | 118 | 63 | 2 | 14 | 131 | 34 | 148 | 4.63e-25 | 101 |
| MS.gene052833.t1 | MTR_3g061340 | 26.962 | 293 | 176 | 12 | 9 | 294 | 12 | 273 | 4.88e-25 | 103 |
| MS.gene052833.t1 | MTR_1g035460 | 24.430 | 307 | 194 | 7 | 21 | 303 | 2 | 294 | 3.93e-23 | 100 |
| MS.gene052833.t1 | MTR_1g035470 | 42.991 | 107 | 58 | 2 | 21 | 127 | 2 | 105 | 1.00e-22 | 93.6 |
| MS.gene052833.t1 | MTR_6g043890 | 27.817 | 284 | 172 | 10 | 13 | 280 | 23 | 289 | 2.11e-22 | 97.8 |
| MS.gene052833.t1 | MTR_3g061330 | 27.854 | 219 | 135 | 5 | 9 | 222 | 12 | 212 | 3.93e-21 | 92.4 |
| MS.gene052833.t1 | MTR_1g035520 | 27.667 | 300 | 186 | 7 | 21 | 294 | 88 | 382 | 6.74e-21 | 94.0 |
| MS.gene052833.t1 | MTR_1g035520 | 42.574 | 101 | 51 | 3 | 309 | 402 | 283 | 383 | 6.52e-15 | 76.3 |
| MS.gene052833.t1 | MTR_3g061290 | 34.161 | 161 | 92 | 5 | 9 | 163 | 12 | 164 | 1.66e-20 | 89.4 |
| MS.gene052833.t1 | MTR_7g050640 | 43.119 | 109 | 52 | 4 | 5 | 103 | 7 | 115 | 3.56e-14 | 68.9 |
| MS.gene052833.t1 | MTR_1g034210 | 23.955 | 359 | 201 | 13 | 6 | 296 | 4 | 358 | 1.08e-13 | 72.4 |
| MS.gene052833.t1 | MTR_3g005480 | 22.680 | 291 | 159 | 9 | 14 | 297 | 30 | 261 | 6.45e-13 | 68.9 |
| MS.gene052833.t1 | MTR_4g068320 | 35.644 | 101 | 59 | 2 | 7 | 101 | 4 | 104 | 2.55e-12 | 68.6 |
| MS.gene052833.t1 | MTR_3g005490 | 20.137 | 293 | 167 | 7 | 14 | 299 | 30 | 262 | 1.11e-11 | 65.1 |
| MS.gene052833.t1 | MTR_1g035440 | 35.870 | 92 | 56 | 2 | 14 | 102 | 24 | 115 | 1.70e-11 | 64.3 |
| MS.gene052833.t1 | MTR_1g034240 | 32.432 | 111 | 68 | 3 | 7 | 110 | 5 | 115 | 4.74e-11 | 64.7 |
| MS.gene052833.t1 | MTR_3g061220 | 31.858 | 113 | 60 | 4 | 9 | 115 | 12 | 113 | 7.64e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052833.t1 | AT3G18990 | 27.273 | 341 | 195 | 13 | 7 | 299 | 4 | 339 | 1.92e-22 | 98.2 |
| MS.gene052833.t1 | AT3G18990 | 27.515 | 338 | 192 | 13 | 7 | 296 | 4 | 336 | 2.95e-22 | 97.4 |
| MS.gene052833.t1 | AT4G33280 | 25.890 | 309 | 194 | 13 | 6 | 297 | 30 | 320 | 9.06e-11 | 63.2 |
Find 71 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1.4:+20529195 | None:intergenic |
| TTTGCAAAGTTTCTGAAATA+TGG | 0.166510 | 1.4:-20529110 | MS.gene052833:CDS |
| TATTTCAAGGTTAAGATATT+TGG | 0.174943 | 1.4:-20529053 | MS.gene052833:CDS |
| CTTTGTGAATGGTTCGTTTC+CGG | 0.201000 | 1.4:+20527819 | None:intergenic |
| TATTTCTCCACATATTTCTT+AGG | 0.222742 | 1.4:+20529245 | None:intergenic |
| GTGTTTAATGTTTCAATTGT+AGG | 0.249847 | 1.4:-20526851 | MS.gene052833:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.4:-20527020 | MS.gene052833:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1.4:-20528020 | MS.gene052833:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1.4:-20529241 | MS.gene052833:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1.4:-20527190 | MS.gene052833:CDS |
| ATATCTGGTTTCAAAAGAAT+TGG | 0.297094 | 1.4:-20529139 | MS.gene052833:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1.4:+20529203 | None:intergenic |
| TTCATCAACAGATTTGATAT+TGG | 0.305884 | 1.4:+20529004 | None:intergenic |
| TTACACCACTGGCTATTTCT+TGG | 0.311022 | 1.4:-20528156 | MS.gene052833:intron |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.4:-20529083 | MS.gene052833:CDS |
| CATTAACAGCTTCAGATGTT+AGG | 0.318603 | 1.4:+20528213 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.4:+20527850 | None:intergenic |
| TGGCAAGAGAAAATTTAGTA+TGG | 0.328932 | 1.4:-20528832 | MS.gene052833:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1.4:+20529204 | None:intergenic |
| CCTAGTAATTTCTTTGTGAA+TGG | 0.368107 | 1.4:+20527808 | None:intergenic |
| CCATTCACAAAGAAATTACT+AGG | 0.370451 | 1.4:-20527808 | MS.gene052833:intron |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1.4:-20528019 | MS.gene052833:CDS |
| AATTATTATCAGAGTCTTTG+TGG | 0.412362 | 1.4:-20526971 | MS.gene052833:CDS |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1.4:+20529417 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.4:-20527930 | MS.gene052833:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1.4:-20526914 | MS.gene052833:CDS |
| AAATGCCAAAGCAAGCTAAA+AGG | 0.432567 | 1.4:-20528863 | MS.gene052833:CDS |
| AGTCTTTGTGGCTGTAGGTT+CGG | 0.434160 | 1.4:-20526959 | MS.gene052833:CDS |
| CATTGGTGGATCATATTTCA+AGG | 0.436459 | 1.4:-20529066 | MS.gene052833:CDS |
| CAAGCTAAAAGGACAAGAAA+TGG | 0.436835 | 1.4:-20528852 | MS.gene052833:CDS |
| GAGGTGAGTTTGAGGTATTA+TGG | 0.442856 | 1.4:-20527976 | MS.gene052833:CDS |
| TATCTGGTTTCAAAAGAATT+GGG | 0.448254 | 1.4:-20529138 | MS.gene052833:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.4:-20527019 | MS.gene052833:CDS |
| TGGAGAGTAATGGTGATATC+TGG | 0.453783 | 1.4:-20529154 | MS.gene052833:CDS |
| CAAAGTAGCAATGGTGAAGA+AGG | 0.457353 | 1.4:-20528246 | MS.gene052833:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.465508 | 1.4:-20527196 | MS.gene052833:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.4:+20528184 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.4:-20529080 | MS.gene052833:CDS |
| TGTGGCTGTAGGTTCGGTAA+AGG | 0.488255 | 1.4:-20526953 | MS.gene052833:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.490308 | 1.4:-20527052 | MS.gene052833:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.4:+20528185 | None:intergenic |
| AATATCAAATCTGTTGATGA+AGG | 0.508408 | 1.4:-20529002 | MS.gene052833:CDS |
| AATGTTACTATTACTCGTGC+CGG | 0.509303 | 1.4:-20527838 | MS.gene052833:CDS |
| ACCACCCAACCAAAATTCTC+AGG | 0.510316 | 1.4:-20528801 | MS.gene052833:intron |
| GGAGTGTGGAGGTGAGTTTG+AGG | 0.514661 | 1.4:-20527984 | MS.gene052833:CDS |
| GCTGTAGGTTCGGTAAAGGT+TGG | 0.529320 | 1.4:-20526949 | MS.gene052833:CDS |
| CTCTTCATGACTTTCTTCCG+TGG | 0.531563 | 1.4:+20528923 | None:intergenic |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.4:-20527032 | MS.gene052833:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1.4:-20529200 | MS.gene052833:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1.4:-20528005 | MS.gene052833:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.555107 | 1.4:+20528054 | None:intergenic |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.4:-20527876 | MS.gene052833:CDS |
| AATGTGGTATGGGTGGTGGA+TGG | 0.565938 | 1.4:-20527942 | MS.gene052833:CDS |
| ATCAGAGTCTTTGTGGCTGT+AGG | 0.569137 | 1.4:-20526964 | MS.gene052833:CDS |
| ATGACACAATCTTACACCAC+TGG | 0.570000 | 1.4:-20528167 | MS.gene052833:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.4:-20527172 | MS.gene052833:intron |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1.4:-20528015 | MS.gene052833:CDS |
| GCTGAAGACACAGAAGAAGA+AGG | 0.583292 | 1.4:-20528978 | MS.gene052833:CDS |
| TGATGACAGTTCAGATGAGG+TGG | 0.583984 | 1.4:-20528886 | MS.gene052833:CDS |
| GAGGGTTCCTAAGAAATATG+TGG | 0.594786 | 1.4:-20529252 | MS.gene052833:CDS |
| AGGTAGTAACAAAGTAGCAA+TGG | 0.603454 | 1.4:-20528255 | MS.gene052833:CDS |
| ATCAAGTGATGATGAAGCCA+CGG | 0.612397 | 1.4:-20528940 | MS.gene052833:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1.4:-20527998 | MS.gene052833:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:-20529236 | MS.gene052833:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1.4:-20526921 | MS.gene052833:CDS |
| GCATTTGCAGAGTGTACCAA+AGG | 0.627502 | 1.4:-20527068 | MS.gene052833:intron |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1.4:-20527006 | MS.gene052833:CDS |
| AAGTGATGACAGTTCAGATG+AGG | 0.649994 | 1.4:-20528889 | MS.gene052833:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.650568 | 1.4:-20527995 | MS.gene052833:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.4:-20527018 | MS.gene052833:CDS |
| ACTTACCAAGAAATAGCCAG+TGG | 0.707969 | 1.4:+20528151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATGATTTATTCA+CGG | + | chr1.4:20528838-20528857 | None:intergenic | 10.0% |
| !! | TAAACATATAATTTATAGTT+AGG | + | chr1.4:20528934-20528953 | None:intergenic | 10.0% |
| !!! | ATATTTAAAATGAAAGTTTA+AGG | + | chr1.4:20528815-20528834 | None:intergenic | 10.0% |
| !! | TTAAAACTCTCAAAAAATTT+GGG | - | chr1.4:20528990-20529009 | MS.gene052833:CDS | 15.0% |
| !!! | AAAATATGTGATTTTTATCA+TGG | - | chr1.4:20527895-20527914 | MS.gene052833:CDS | 15.0% |
| !!! | AAATGTGATTTTTTTTTTGT+AGG | - | chr1.4:20527871-20527890 | MS.gene052833:CDS | 15.0% |
| !!! | TAAAGTTTTTTTTCTTCATT+TGG | - | chr1.4:20528734-20528753 | MS.gene052833:intron | 15.0% |
| !!! | TACTTTTTATATAAAAACAG+TGG | - | chr1.4:20527674-20527693 | MS.gene052833:intron | 15.0% |
| !!! | TATATGTTTAAGTTCATAAT+TGG | - | chr1.4:20528944-20528963 | MS.gene052833:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.4:20527096-20527115 | MS.gene052833:intron | 15.0% |
| !!! | TTTAAAACTCTCAAAAAATT+TGG | - | chr1.4:20528989-20529008 | MS.gene052833:CDS | 15.0% |
| !! | AACAATGATACATAAACAAT+AGG | + | chr1.4:20526959-20526978 | None:intergenic | 20.0% |
| !! | ACAATGATACATAAACAATA+GGG | + | chr1.4:20526958-20526977 | None:intergenic | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1.4:20528426-20528445 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.4:20527073-20527092 | MS.gene052833:intron | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | - | chr1.4:20527220-20527239 | MS.gene052833:intron | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.4:20527072-20527091 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.4:20527073-20527092 | None:intergenic | 20.0% |
| !!! | ACTTTTTAGTAGTTAGTAAT+TGG | - | chr1.4:20528867-20528886 | MS.gene052833:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.4:20527095-20527114 | MS.gene052833:intron | 20.0% |
| !!! | TTAATTTTTTTTGTTGCAGA+GGG | - | chr1.4:20527003-20527022 | MS.gene052833:CDS | 20.0% |
| !!! | TTTTATTTAGTTAATCCTAC+CGG | + | chr1.4:20529123-20529142 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.4:20529253-20529272 | MS.gene052833:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1.4:20526859-20526878 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.4:20529254-20529273 | MS.gene052833:CDS | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | - | chr1.4:20529302-20529321 | MS.gene052833:intron | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1.4:20527032-20527051 | MS.gene052833:CDS | 25.0% |
| ! | AGTTAATTAATGCCTAAACT+TGG | - | chr1.4:20527994-20528013 | MS.gene052833:CDS | 25.0% |
| ! | ATTTGGGTATCATAGAAATT+AGG | - | chr1.4:20529006-20529025 | MS.gene052833:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1.4:20527190-20527209 | MS.gene052833:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.4:20528091-20528110 | None:intergenic | 25.0% |
| ! | GTGTTTAATGTTTCAATTGT+AGG | - | chr1.4:20529422-20529441 | MS.gene052833:CDS | 25.0% |
| ! | TAAAAAAAGAAACTGAATGC+TGG | + | chr1.4:20528903-20528922 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+AGG | + | chr1.4:20527031-20527050 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.4:20528092-20528111 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1.4:20527193-20527212 | MS.gene052833:CDS | 25.0% |
| ! | TTCATCAACAGATTTGATAT+TGG | + | chr1.4:20527272-20527291 | None:intergenic | 25.0% |
| ! | TTTATTTAGTTAATCCTACC+GGG | + | chr1.4:20529122-20529141 | None:intergenic | 25.0% |
| !! | AATATCAAATCTGTTGATGA+AGG | - | chr1.4:20527271-20527290 | MS.gene052833:intron | 25.0% |
| !! | ATATCTGGTTTCAAAAGAAT+TGG | - | chr1.4:20527134-20527153 | MS.gene052833:intron | 25.0% |
| !! | CAAGAAAATTTTCTTTTGGA+CGG | + | chr1.4:20528670-20528689 | None:intergenic | 25.0% |
| !! | CCAAAAGAAAATTTTCTTGA+GGG | - | chr1.4:20528671-20528690 | MS.gene052833:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1.4:20528237-20528256 | MS.gene052833:CDS | 25.0% |
| !! | GTGATTTTTCTCTCTTTTTT+TGG | - | chr1.4:20527494-20527513 | MS.gene052833:intron | 25.0% |
| !! | TATCTGGTTTCAAAAGAATT+GGG | - | chr1.4:20527135-20527154 | MS.gene052833:intron | 25.0% |
| !! | TCCAAAAGAAAATTTTCTTG+AGG | - | chr1.4:20528670-20528689 | MS.gene052833:intron | 25.0% |
| !!! | CTTAATTTTTTTTGTTGCAG+AGG | - | chr1.4:20527002-20527021 | MS.gene052833:CDS | 25.0% |
| !!! | TACTTTTAAGAGTTATGCAA+TGG | - | chr1.4:20527582-20527601 | MS.gene052833:intron | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | - | chr1.4:20527504-20527523 | MS.gene052833:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.4:20527099-20527118 | MS.gene052833:intron | 25.0% |
| !!! | TTTGCAAAGTTTCTGAAATA+TGG | - | chr1.4:20527163-20527182 | MS.gene052833:intron | 25.0% |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.4:20529241-20529260 | MS.gene052833:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.4:20529255-20529274 | MS.gene052833:intron | 30.0% | |
| ATGACAAGGTTATAAGAAAG+GGG | - | chr1.4:20528586-20528605 | MS.gene052833:intron | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | - | chr1.4:20529352-20529371 | MS.gene052833:intron | 30.0% | |
| CCATTCACAAAGAAATTACT+AGG | - | chr1.4:20528465-20528484 | MS.gene052833:intron | 30.0% | |
| CCTAGTAATTTCTTTGTGAA+TGG | + | chr1.4:20528468-20528487 | None:intergenic | 30.0% | |
| GATGACAAGGTTATAAGAAA+GGG | - | chr1.4:20528585-20528604 | MS.gene052833:intron | 30.0% | |
| GTCATCGACAAAAGAAATAA+AGG | + | chr1.4:20528571-20528590 | None:intergenic | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1.4:20528254-20528273 | MS.gene052833:CDS | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.4:20527037-20527056 | MS.gene052833:CDS | 30.0% | |
| TGGCAAGAGAAAATTTAGTA+TGG | - | chr1.4:20527441-20527460 | MS.gene052833:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | - | chr1.4:20528253-20528272 | MS.gene052833:CDS | 30.0% | |
| TTATTTAGTTAATCCTACCG+GGG | + | chr1.4:20529121-20529140 | None:intergenic | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.4:20526848-20526867 | MS.gene052833:CDS | 30.0% |
| ! | CCCTCAAGAAAATTTTCTTT+TGG | + | chr1.4:20528674-20528693 | None:intergenic | 30.0% |
| ! | GAAAAATCACCTGAGAATTT+TGG | + | chr1.4:20527484-20527503 | None:intergenic | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1.4:20528397-20528416 | MS.gene052833:intron | 30.0% |
| ! | GTTGCAATTTTATGTCTGAA+AGG | - | chr1.4:20527608-20527627 | MS.gene052833:intron | 30.0% |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1.4:20528193-20528212 | MS.gene052833:CDS | 30.0% |
| ! | TACATTCACGAGAATTTTCT+CGG | + | chr1.4:20527711-20527730 | None:intergenic | 30.0% |
| ! | TATTTCTTTTGTCGATGACA+AGG | - | chr1.4:20528572-20528591 | MS.gene052833:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.4:20527091-20527110 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTAGCAAAGCGT+CGG | + | chr1.4:20527736-20527755 | None:intergenic | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1.4:20529359-20529378 | MS.gene052833:intron | 35.0% | |
| AAATGCCAAAGCAAGCTAAA+AGG | - | chr1.4:20527410-20527429 | MS.gene052833:intron | 35.0% | |
| AACTGAATGCTGGATAAGTT+AGG | + | chr1.4:20528893-20528912 | None:intergenic | 35.0% | |
| AATGTTACTATTACTCGTGC+CGG | - | chr1.4:20528435-20528454 | MS.gene052833:intron | 35.0% | |
| AATTAATGCCTAAACTTGGC+AGG | - | chr1.4:20527998-20528017 | MS.gene052833:CDS | 35.0% | |
| ACCCAGAAAAAATGTGGTAT+GGG | - | chr1.4:20528321-20528340 | MS.gene052833:intron | 35.0% | |
| AGGTAGTAACAAAGTAGCAA+TGG | - | chr1.4:20528018-20528037 | MS.gene052833:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.4:20527081-20527100 | None:intergenic | 35.0% | |
| CAAGCTAAAAGGACAAGAAA+TGG | - | chr1.4:20527421-20527440 | MS.gene052833:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+AGG | + | chr1.4:20528063-20528082 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1.4:20529221-20529240 | MS.gene052833:CDS | 35.0% | |
| CGATGACAAGGTTATAAGAA+AGG | - | chr1.4:20528584-20528603 | MS.gene052833:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1.4:20529077-20529096 | MS.gene052833:CDS | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1.4:20528200-20528219 | None:intergenic | 35.0% | |
| TACCCAGAAAAAATGTGGTA+TGG | - | chr1.4:20528320-20528339 | MS.gene052833:intron | 35.0% | |
| TATGGTACCCAGAAAAAATG+TGG | - | chr1.4:20528315-20528334 | MS.gene052833:intron | 35.0% | |
| TGCTAACAAAAAAAACACGC+AGG | - | chr1.4:20527742-20527761 | MS.gene052833:intron | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1.4:20528222-20528241 | None:intergenic | 35.0% | |
| ! | ACATTCACGAGAATTTTCTC+GGG | + | chr1.4:20527710-20527729 | None:intergenic | 35.0% |
| ! | CATTGGTGGATCATATTTCA+AGG | - | chr1.4:20527207-20527226 | MS.gene052833:CDS | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1.4:20529224-20529243 | None:intergenic | 35.0% |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1.4:20529083-20529102 | MS.gene052833:CDS | 35.0% |
| !! | AATCACCTGAGAATTTTGGT+TGG | + | chr1.4:20527480-20527499 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1.4:20527109-20527128 | MS.gene052833:intron | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1.4:20528268-20528287 | MS.gene052833:intron | 35.0% |
| !!! | ACCCATACCACATTTTTTCT+GGG | + | chr1.4:20528325-20528344 | None:intergenic | 35.0% |
| !!! | ATCACCTGAGAATTTTGGTT+GGG | + | chr1.4:20527479-20527498 | None:intergenic | 35.0% |
| !!! | TTTTTTGTTAGCAAAGCGTC+GGG | + | chr1.4:20527735-20527754 | None:intergenic | 35.0% |
| AAAAAATGTGGTATGGGTGG+TGG | - | chr1.4:20528327-20528346 | MS.gene052833:intron | 40.0% | |
| AAGTGATGACAGTTCAGATG+AGG | - | chr1.4:20527384-20527403 | MS.gene052833:intron | 40.0% | |
| ACTTACCAAGAAATAGCCAG+TGG | + | chr1.4:20528125-20528144 | None:intergenic | 40.0% | |
| ATGACACAATCTTACACCAC+TGG | - | chr1.4:20528106-20528125 | MS.gene052833:intron | 40.0% | |
| CAAAGTAGCAATGGTGAAGA+AGG | - | chr1.4:20528027-20528046 | MS.gene052833:CDS | 40.0% | |
| CAGAAAAAATGTGGTATGGG+TGG | - | chr1.4:20528324-20528343 | MS.gene052833:intron | 40.0% | |
| CTTTGTGAATGGTTCGTTTC+CGG | + | chr1.4:20528457-20528476 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGAAATATG+TGG | - | chr1.4:20527021-20527040 | MS.gene052833:CDS | 40.0% | |
| GTGTTTATGCCTGTACTGTT+CGG | - | chr1.4:20529041-20529060 | MS.gene052833:CDS | 40.0% | |
| GTTGCAAAGAAGGAAGACAT+TGG | - | chr1.4:20528626-20528645 | MS.gene052833:intron | 40.0% | |
| TATAAGAAAGGGGTCTCTTG+TGG | - | chr1.4:20528596-20528615 | MS.gene052833:intron | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | - | chr1.4:20529267-20529286 | MS.gene052833:intron | 40.0% | |
| TGGAGAGTAATGGTGATATC+TGG | - | chr1.4:20527119-20527138 | MS.gene052833:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1.4:20528009-20528028 | None:intergenic | 40.0% | |
| ! | ATCAAGTGATGATGAAGCCA+CGG | - | chr1.4:20527333-20527352 | MS.gene052833:intron | 40.0% |
| ! | GAGGTGAGTTTGAGGTATTA+TGG | - | chr1.4:20528297-20528316 | MS.gene052833:intron | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1.4:20528343-20528362 | MS.gene052833:intron | 40.0% |
| !! | TGGTAAGAGTGTTGCAAAGA+AGG | - | chr1.4:20528616-20528635 | MS.gene052833:intron | 40.0% |
| !! | TTACACCACTGGCTATTTCT+TGG | - | chr1.4:20528117-20528136 | MS.gene052833:intron | 40.0% |
| !!! | CACCCATACCACATTTTTTC+TGG | + | chr1.4:20528326-20528345 | None:intergenic | 40.0% |
| !!! | CTTGTCCTTTTAGCTTGCTT+TGG | + | chr1.4:20527418-20527437 | None:intergenic | 40.0% |
| ACATTGGAGGAACGTCTTCT+AGG | - | chr1.4:20528642-20528661 | MS.gene052833:intron | 45.0% | |
| ACCACCCAACCAAAATTCTC+AGG | - | chr1.4:20527472-20527491 | MS.gene052833:intron | 45.0% | |
| AGTCTTTGTGGCTGTAGGTT+CGG | - | chr1.4:20529314-20529333 | MS.gene052833:intron | 45.0% | |
| ATAATGCTTTGTAGCCCGAC+AGG | + | chr1.4:20527843-20527862 | None:intergenic | 45.0% | |
| ATCAGAGTCTTTGTGGCTGT+AGG | - | chr1.4:20529309-20529328 | MS.gene052833:intron | 45.0% | |
| CTCTTCATGACTTTCTTCCG+TGG | + | chr1.4:20527353-20527372 | None:intergenic | 45.0% | |
| GCAAAGAAGGAAGACATTGG+AGG | - | chr1.4:20528629-20528648 | MS.gene052833:intron | 45.0% | |
| GCATTTGCAGAGTGTACCAA+AGG | - | chr1.4:20529205-20529224 | MS.gene052833:CDS | 45.0% | |
| GCTGAAGACACAGAAGAAGA+AGG | - | chr1.4:20527295-20527314 | MS.gene052833:intron | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1.4:20528258-20528277 | MS.gene052833:intron | 45.0% | |
| TGATGACAGTTCAGATGAGG+TGG | - | chr1.4:20527387-20527406 | MS.gene052833:intron | 45.0% | |
| TTATGCCTGTACTGTTCGGA+AGG | - | chr1.4:20529045-20529064 | MS.gene052833:CDS | 45.0% | |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1.4:20528278-20528297 | MS.gene052833:intron | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1.4:20528275-20528294 | MS.gene052833:intron | 45.0% |
| !!! | ACCTGAGAATTTTGGTTGGG+TGG | + | chr1.4:20527476-20527495 | None:intergenic | 45.0% |
| !! | AAATAAAATAAATACTTAAT+TGG | - | chr1.4:20527921-20527940 | MS.gene052833:CDS | 5.0% |
| AACCCCCCTGAATGGTAAGT+GGG | + | chr1.4:20527769-20527788 | None:intergenic | 50.0% | |
| ACGTAATGTCGGGAAGGTCT+CGG | - | chr1.4:20527810-20527829 | MS.gene052833:CDS | 50.0% | |
| ACTGTTGCGCCACGTAATGT+CGG | - | chr1.4:20527799-20527818 | MS.gene052833:intron | 50.0% | |
| TAACCCCCCTGAATGGTAAG+TGG | + | chr1.4:20527770-20527789 | None:intergenic | 50.0% | |
| TACGTGGCGCAACAGTATTG+TGG | + | chr1.4:20527795-20527814 | None:intergenic | 50.0% | |
| TGTGGTATAACCCCCCTGAA+TGG | + | chr1.4:20527777-20527796 | None:intergenic | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.4:20529101-20529120 | MS.gene052833:CDS | 50.0% | |
| ! | GCTGTAGGTTCGGTAAAGGT+TGG | - | chr1.4:20529324-20529343 | MS.gene052833:intron | 50.0% |
| ! | TGTGGCTGTAGGTTCGGTAA+AGG | - | chr1.4:20529320-20529339 | MS.gene052833:intron | 50.0% |
| !! | AATGTGGTATGGGTGGTGGA+TGG | - | chr1.4:20528331-20528350 | MS.gene052833:intron | 50.0% |
| ACCCCCCTGAATGGTAAGTG+GGG | + | chr1.4:20527768-20527787 | None:intergenic | 55.0% | |
| AGGCCCCACTTACCATTCAG+GGG | - | chr1.4:20527762-20527781 | MS.gene052833:intron | 55.0% | |
| CACGACCTTCCGAACAGTAC+AGG | + | chr1.4:20529053-20529072 | None:intergenic | 55.0% | |
| CAGGCCCCACTTACCATTCA+GGG | - | chr1.4:20527761-20527780 | MS.gene052833:intron | 55.0% | |
| CGTAATGTCGGGAAGGTCTC+GGG | - | chr1.4:20527811-20527830 | MS.gene052833:CDS | 55.0% | |
| CTGTTGCGCCACGTAATGTC+GGG | - | chr1.4:20527800-20527819 | MS.gene052833:intron | 55.0% | |
| GAGACCTTCCCGACATTACG+TGG | + | chr1.4:20527811-20527830 | None:intergenic | 55.0% | |
| GGAGTGTGGAGGTGAGTTTG+AGG | - | chr1.4:20528289-20528308 | MS.gene052833:intron | 55.0% | |
| GCAGGCCCCACTTACCATTC+AGG | - | chr1.4:20527760-20527779 | MS.gene052833:intron | 60.0% | |
| GCCCCACTTACCATTCAGGG+GGG | - | chr1.4:20527764-20527783 | MS.gene052833:intron | 60.0% | |
| GGCCCCACTTACCATTCAGG+GGG | - | chr1.4:20527763-20527782 | MS.gene052833:intron | 60.0% | |
| GGTCTCGGGAAGCAACCTGT+CGG | - | chr1.4:20527825-20527844 | MS.gene052833:CDS | 60.0% | |
| GTCTCGGGAAGCAACCTGTC+GGG | - | chr1.4:20527826-20527845 | MS.gene052833:CDS | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.4:20529105-20529124 | MS.gene052833:CDS | 60.0% | |
| TGCGCCACGTAATGTCGGGA+AGG | - | chr1.4:20527804-20527823 | MS.gene052833:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20526838 | 20529457 | 20526838 | ID=MS.gene052833 |
| chr1.4 | mRNA | 20526838 | 20529457 | 20526838 | ID=MS.gene052833.t1;Parent=MS.gene052833 |
| chr1.4 | exon | 20529401 | 20529457 | 20529401 | ID=MS.gene052833.t1.exon1;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20529401 | 20529457 | 20529401 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| chr1.4 | exon | 20528802 | 20529273 | 20528802 | ID=MS.gene052833.t1.exon2;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20528802 | 20529273 | 20528802 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| chr1.4 | exon | 20528157 | 20528275 | 20528157 | ID=MS.gene052833.t1.exon3;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20528157 | 20528275 | 20528157 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| chr1.4 | exon | 20527809 | 20528082 | 20527809 | ID=MS.gene052833.t1.exon4;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20527809 | 20528082 | 20527809 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| chr1.4 | exon | 20527173 | 20527228 | 20527173 | ID=MS.gene052833.t1.exon5;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20527173 | 20527228 | 20527173 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| chr1.4 | exon | 20526838 | 20527080 | 20526838 | ID=MS.gene052833.t1.exon6;Parent=MS.gene052833.t1 |
| chr1.4 | CDS | 20526838 | 20527080 | 20526838 | ID=cds.MS.gene052833.t1;Parent=MS.gene052833.t1 |
| Gene Sequence |
| Protein sequence |
