AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052828.t1 MTR_6g061070 70.510 451 113 7 1 444 33 470 0.0 621
MS.gene052828.t1 MTR_1g035520 56.026 307 112 8 1 294 87 383 1.59e-94 291
MS.gene052828.t1 MTR_1g035520 80.982 163 31 0 282 444 221 383 1.99e-89 278
MS.gene052828.t1 MTR_1g033740 62.346 162 39 2 1 162 37 176 2.13e-63 204
MS.gene052828.t1 MTR_1g035500 61.111 162 42 2 1 162 40 180 5.38e-63 203
MS.gene052828.t1 MTR_1g035480 61.728 162 38 2 1 162 32 169 1.81e-61 199
MS.gene052828.t1 MTR_1g035620 34.598 448 227 14 2 445 25 410 9.84e-60 202
MS.gene052828.t1 MTR_1g035570 32.906 468 224 15 2 462 21 405 6.54e-59 199
MS.gene052828.t1 MTR_1g035510 54.762 168 53 2 1 168 1 145 4.29e-54 181
MS.gene052828.t1 MTR_1g035470 58.125 160 40 3 1 160 1 133 2.64e-52 173
MS.gene052828.t1 MTR_1g035640 31.056 483 254 20 2 444 21 464 2.41e-48 173
MS.gene052828.t1 MTR_1g035490 35.197 304 162 12 143 444 58 328 2.52e-41 150
MS.gene052828.t1 MTR_1g050845 30.900 411 209 12 2 409 25 363 6.69e-39 150
MS.gene052828.t1 MTR_5g044670 29.573 328 189 10 1 317 31 327 5.23e-36 136
MS.gene052828.t1 MTR_1g108780 26.226 469 293 15 2 440 13 458 2.68e-31 125
MS.gene052828.t1 MTR_3g098790 29.043 303 180 8 1 297 28 301 9.83e-30 119
MS.gene052828.t1 MTR_7g050720 30.132 302 187 7 1 294 25 310 5.56e-29 116
MS.gene052828.t1 MTR_8g103940 23.617 470 304 14 2 445 55 495 8.57e-28 116
MS.gene052828.t1 MTR_7g050710 29.043 303 186 8 2 297 29 309 2.86e-27 112
MS.gene052828.t1 MTR_3g061350 29.966 297 164 12 2 293 26 283 4.72e-25 104
MS.gene052828.t1 MTR_7g050580 27.483 302 177 7 1 297 28 292 2.53e-24 103
MS.gene052828.t1 MTR_3g061310 27.946 297 173 10 2 294 26 285 5.07e-24 102
MS.gene052828.t1 MTR_6g043890 27.797 295 172 12 2 285 31 295 1.46e-23 101
MS.gene052828.t1 MTR_4g119990 27.500 320 190 13 2 306 31 323 3.02e-23 101
MS.gene052828.t1 MTR_1g035650 34.272 213 97 8 2 208 25 200 3.41e-23 97.4
MS.gene052828.t1 MTR_1g035460 26.101 318 207 9 1 308 1 300 6.46e-22 97.8
MS.gene052828.t1 MTR_3g061370 29.195 298 165 12 2 293 23 280 7.24e-22 95.9
MS.gene052828.t1 MTR_3g061340 27.243 301 159 12 2 294 26 274 1.65e-21 94.7
MS.gene052828.t1 MTR_7g050590 25.658 304 197 7 1 297 1 282 1.36e-20 92.4
MS.gene052828.t1 MTR_1g035540 36.364 154 46 4 217 370 2 103 2.78e-19 84.3
MS.gene052828.t1 MTR_7g050560 27.036 307 172 12 1 297 28 292 1.51e-18 86.7
MS.gene052828.t1 MTR_3g061320 26.936 297 170 13 2 294 26 279 5.01e-18 84.7
MS.gene052828.t1 MTR_1g021360 26.552 290 172 12 2 281 198 456 1.34e-16 82.4
MS.gene052828.t1 MTR_1g021440 23.718 312 202 11 2 281 38 345 1.41e-14 75.5
MS.gene052828.t1 MTR_3g061330 29.954 217 116 7 2 215 26 209 1.89e-14 73.6
MS.gene052828.t1 MTR_1g021330 21.429 308 211 10 2 281 42 346 3.17e-14 74.7
MS.gene052828.t1 MTR_1g021400 23.256 301 202 11 2 281 46 338 1.17e-13 72.8
MS.gene052828.t1 MTR_3g061300 32.407 108 65 3 187 293 22 122 4.50e-13 66.6
MS.gene052828.t1 MTR_3g061290 34.146 123 69 4 2 121 26 139 5.16e-12 65.5
MS.gene052828.t1 MTR_7g050640 43.590 78 41 2 1 75 28 105 7.75e-12 62.8
MS.gene052828.t1 MTR_3g061220 36.735 98 52 2 2 99 26 113 1.63e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052828.t1 AT3G18990 25.157 318 205 8 2 292 22 333 1.51e-23 101
MS.gene052828.t1 AT3G18990 25.157 318 205 8 2 292 22 333 2.23e-23 102

Find 81 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATATGCGGGCAATTT+TGG 0.164513 1.4:-20609337 MS.gene052828:CDS
TTTGGAAGTTTAAGAGATAT+TGG 0.253059 1.4:+20613530 None:intergenic
TCCCATTCGAAAATTTATTC+TGG 0.254734 1.4:+20611003 None:intergenic
ATGGTATTTGGCTTCAAAAT+TGG 0.298035 1.4:-20613469 MS.gene052828:CDS
CTATCACCTTCAACGTGATA+TGG 0.333665 1.4:+20612692 None:intergenic
AGTTTAAGAGATATTGGATT+TGG 0.342240 1.4:+20613536 None:intergenic
TGCAACGCAGTGATGGTATT+TGG 0.352991 1.4:-20613481 MS.gene052828:CDS
AAGAAGCATGGTATATTTAG+TGG 0.374789 1.4:-20609010 MS.gene052828:CDS
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1.4:+20613402 None:intergenic
TATAATGAACATCTCGACTA+TGG 0.388378 1.4:-20608935 MS.gene052828:CDS
TCTTGATGAACCTTGAGAAT+TGG 0.396663 1.4:+20608612 None:intergenic
TTCCGAGCCTGGTTCCTTTG+TGG 0.399802 1.4:+20610871 None:intergenic
GACAACACCCGTAAAAGATA+TGG 0.404989 1.4:-20609356 MS.gene052828:CDS
TATCTCTCTACAAAATTCCT+TGG 0.444892 1.4:+20613572 None:intergenic
GGTCAGTGTGCAAAATGAAT+TGG 0.447786 1.4:-20613505 MS.gene052828:CDS
AGCAATGCCATTTGAGTTGG+CGG 0.456539 1.4:+20613193 None:intergenic
ATATCTCTTAAACTTCCAAA+TGG 0.460593 1.4:-20613527 MS.gene052828:CDS
TGCTTCTTCAACAGCTCACT+TGG 0.461685 1.4:+20609025 None:intergenic
AAGAGAACCGCCAACTCAAA+TGG 0.462516 1.4:-20613200 MS.gene052828:CDS
GAATTTACATGAGATGTTCA+AGG 0.464486 1.4:-20609166 MS.gene052828:CDS
TGATGAACCTTGAGAATTGG+AGG 0.473528 1.4:+20608615 None:intergenic
GACTATGGTTGGTTCACTAA+AGG 0.474605 1.4:-20608920 MS.gene052828:CDS
TGAGAGTAGGGGAAGGAACA+TGG 0.483751 1.4:-20608973 MS.gene052828:CDS
TGTGAGAGATTGCAAAGTAA+AGG 0.489991 1.4:-20608885 MS.gene052828:CDS
AGTGAAACTAGGATTCTCAT+TGG 0.490637 1.4:+20612727 None:intergenic
TGGAGGAAGCATCATACCTT+AGG 0.491721 1.4:+20608632 None:intergenic
TATCTCTTAAACTTCCAAAT+GGG 0.498661 1.4:-20613526 MS.gene052828:CDS
ATAGTAATCGTGAATGAAAG+TGG 0.499531 1.4:+20610902 None:intergenic
CGTTGAAGGTGATAGAAGAT+TGG 0.499768 1.4:-20612684 MS.gene052828:intron
TTATCACCATATCACGTTGA+AGG 0.509106 1.4:-20612698 MS.gene052828:CDS
AACCACAAAGGAACCAGGCT+CGG 0.517483 1.4:-20610873 MS.gene052828:CDS
GTTGCTTACTGTTAATGTTG+TGG 0.518922 1.4:+20608549 None:intergenic
TTTGGCTTCAAAATTGGAAG+AGG 0.520115 1.4:-20613463 MS.gene052828:CDS
TAATGGAAACACAGGAGGCA+TGG 0.520474 1.4:-20612807 MS.gene052828:CDS
TGTGCAAAATCATGTGTTCA+AGG 0.521657 1.4:-20608831 MS.gene052828:intron
TATTCTTTCGAAAACCAACT+AGG 0.522446 1.4:+20611115 None:intergenic
ATTCTCATTGGGATGCTCAA+TGG 0.528590 1.4:+20612739 None:intergenic
CCAGGCTCGGAAAAGTTTCA+AGG 0.529291 1.4:-20610860 MS.gene052828:intron
AGTAGCAATGCCATTTGAGT+TGG 0.533991 1.4:+20613190 None:intergenic
GTGAAACTAGGATTCTCATT+GGG 0.534567 1.4:+20612728 None:intergenic
AGAGATTGCAAAGTAAAGGC+TGG 0.538378 1.4:-20608881 MS.gene052828:CDS
AAGGCAACAATTAGAAGTGT+TGG 0.542696 1.4:-20611070 MS.gene052828:CDS
AATGGAAACACAGGAGGCAT+GGG 0.543418 1.4:-20612806 MS.gene052828:CDS
TACATGAATGAGTTATTGCA+AGG 0.543984 1.4:-20611094 MS.gene052828:CDS
ATGAACATCTCGACTATGGT+TGG 0.544359 1.4:-20608931 MS.gene052828:CDS
ATTCCGTGGAGTTGAGAGTA+GGG 0.547073 1.4:-20608985 MS.gene052828:CDS
GTCAGTGTGCAAAATGAATT+GGG 0.549331 1.4:-20613504 MS.gene052828:CDS
TGAAACAGGCGATACCTAGT+TGG 0.550112 1.4:-20611129 MS.gene052828:intron
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1.4:-20613589 None:intergenic
ATCTCAACCACAAAGGAACC+AGG 0.564790 1.4:-20610878 MS.gene052828:CDS
TATATTTAGTGGAAATTCCG+TGG 0.570238 1.4:-20608999 MS.gene052828:CDS
AATTAGAAGTGTTGGTGAGG+AGG 0.570785 1.4:-20611062 MS.gene052828:CDS
GATGCTTCCTCCAATTCTCA+AGG 0.572727 1.4:-20608622 MS.gene052828:CDS
ATGGTTGGTTCACTAAAGGT+TGG 0.573713 1.4:-20608916 MS.gene052828:CDS
GTAAAAGATATGGAATATGC+GGG 0.574921 1.4:-20609346 MS.gene052828:CDS
AAAATCAGAAAGCAGTCCTA+AGG 0.577450 1.4:-20608648 MS.gene052828:intron
AATTCCGTGGAGTTGAGAGT+AGG 0.585424 1.4:-20608986 MS.gene052828:CDS
GATAATATGAGAGTGAAACT+AGG 0.591398 1.4:+20612716 None:intergenic
TTGTCAATGTTAGTCCGTTG+AGG 0.593883 1.4:+20613155 None:intergenic
AACAATTAGAAGTGTTGGTG+AGG 0.594775 1.4:-20611065 MS.gene052828:CDS
GCAGAGGCTAATGGAAACAC+AGG 0.596384 1.4:-20612815 MS.gene052828:intron
CGTAAAAGATATGGAATATG+CGG 0.600766 1.4:-20609347 MS.gene052828:CDS
CTACTACTGTTACACCTCAA+CGG 0.609207 1.4:-20613169 MS.gene052828:CDS
TGATTAAAGATGATCGAGGA+AGG 0.610178 1.4:+20608584 None:intergenic
AGTGAGCTGTTGAAGAAGCA+TGG 0.617628 1.4:-20609022 MS.gene052828:CDS
AATTGGGTGCAACGCAGTGA+TGG 0.620819 1.4:-20613488 MS.gene052828:CDS
AAACTAAAAGATCTCCGCAT+CGG 0.625099 1.4:+20613426 None:intergenic
TTCCCCTACTCTCAACTCCA+CGG 0.627106 1.4:+20608982 None:intergenic
GGAAGGAACATGGTTTGTAG+AGG 0.629163 1.4:-20608963 MS.gene052828:CDS
CGGGAACATAACTTGCAAGT+CGG 0.642213 1.4:-20610959 MS.gene052828:CDS
GAATGAGTTATTGCAAGGGA+AGG 0.643476 1.4:-20611089 MS.gene052828:CDS
TTTGCAAGTTTGCTCCGATG+CGG 0.646883 1.4:-20613440 MS.gene052828:CDS
TACTATCATCTCAACCACAA+AGG 0.651551 1.4:-20610885 MS.gene052828:CDS
TTCCGTGGAGTTGAGAGTAG+GGG 0.660437 1.4:-20608984 MS.gene052828:CDS
ACATGAATGAGTTATTGCAA+GGG 0.661417 1.4:-20611093 MS.gene052828:CDS
GTGGAGTTGAGAGTAGGGGA+AGG 0.685462 1.4:-20608980 MS.gene052828:CDS
TCTTATAACATCATCAGACA+AGG 0.698207 1.4:-20609142 MS.gene052828:intron
GAGGCTAATGGAAACACAGG+AGG 0.702704 1.4:-20612812 MS.gene052828:CDS
TGGACATGTGCAGAAAACCA+AGG 0.707757 1.4:-20609397 MS.gene052828:intron
TTGGTGAGGAGGATAGAACA+TGG 0.724838 1.4:-20611051 MS.gene052828:CDS
GCTTTGATTAAAGATGATCG+AGG 0.729435 1.4:+20608580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATACATTAATAAAG+TGG + chr1.4:20610324-20610343 None:intergenic 10.0%
!! AAAATATACATTAATAAAGT+GGG + chr1.4:20610323-20610342 None:intergenic 10.0%
!! TTATTGAATAAATTTACTTT+AGG + chr1.4:20610779-20610798 None:intergenic 10.0%
!!! AAAACTTCAAAAATTATTTT+CGG + chr1.4:20610437-20610456 None:intergenic 10.0%
!!! CTAAGATTAATTTTTATATA+CGG - chr1.4:20612491-20612510 MS.gene052828:intron 10.0%
!!! TAAAATATACAAATTTTTCA+AGG - chr1.4:20612432-20612451 MS.gene052828:intron 10.0%
!!! TTATTATTTTAATTATCACT+AGG + chr1.4:20610130-20610149 None:intergenic 10.0%
!! TAAACAGATGAATAATTAAA+AGG + chr1.4:20608979-20608998 None:intergenic 15.0%
!! TGCTTGTAATAAATTAATTA+AGG + chr1.4:20611867-20611886 None:intergenic 15.0%
!!! ATATTTTAAGGTTTAAATCT+TGG - chr1.4:20611343-20611362 MS.gene052828:intron 15.0%
!!! CAAATGTGTAAAATATTTTA+AGG - chr1.4:20611331-20611350 MS.gene052828:intron 15.0%
!!! CTATTTTATTTTACAGTTAT+TGG + chr1.4:20612249-20612268 None:intergenic 15.0%
!! AACAAAGAAAACATAGTTTA+AGG + chr1.4:20612838-20612857 None:intergenic 20.0%
!! ACTAATAGAAAACATATTCA+AGG - chr1.4:20609539-20609558 MS.gene052828:intron 20.0%
!! TACTAACAAAAACATATTCA+AGG - chr1.4:20610753-20610772 MS.gene052828:intron 20.0%
!! TATTAACAAGAAAGACATTT+GGG + chr1.4:20609501-20609520 None:intergenic 20.0%
!! TATTACTGAAAAAGTAGTAT+AGG + chr1.4:20609400-20609419 None:intergenic 20.0%
!! TTCAATACAACTATTAACAA+AGG + chr1.4:20610727-20610746 None:intergenic 20.0%
!! TTTATTCATATATATGCAGT+TGG - chr1.4:20612995-20613014 MS.gene052828:intron 20.0%
!!! AATTTGTATGGATTAAAAAG+TGG + chr1.4:20609066-20609085 None:intergenic 20.0%
!!! ATTGATTTTCTTTTTCTTGA+AGG + chr1.4:20610158-20610177 None:intergenic 20.0%
!!! ATTTGTATGGATTAAAAAGT+GGG + chr1.4:20609065-20609084 None:intergenic 20.0%
!!! GAGAAAGAAGTTTATTTTAA+TGG + chr1.4:20611841-20611860 None:intergenic 20.0%
!!! GATTTTAGTCATTCTAATAA+TGG - chr1.4:20612356-20612375 MS.gene052828:intron 20.0%
!!! TAAAAACTATTTTCAGCATT+TGG + chr1.4:20609209-20609228 None:intergenic 20.0%
!!! TAATTTTTGAAGTTTTGCAA+AGG - chr1.4:20610441-20610460 MS.gene052828:intron 20.0%
!!! TTAGTATTTTCAATGTCATT+AGG + chr1.4:20608815-20608834 None:intergenic 20.0%
!!! TTGATTTTCTTTTTCTTGAA+GGG + chr1.4:20610157-20610176 None:intergenic 20.0%
!!! TTTAAATATGTTTTTTGTCC+TGG + chr1.4:20612543-20612562 None:intergenic 20.0%
! AAACAAAAGAGAAAACGTAT+AGG - chr1.4:20610805-20610824 MS.gene052828:intron 25.0%
! AATAGAAAAAATGACTGATG+TGG - chr1.4:20612264-20612283 MS.gene052828:intron 25.0%
! ACAAAAACAACAGTAATAAG+TGG + chr1.4:20611658-20611677 None:intergenic 25.0%
! AGAACTAAAAACATGTACTT+TGG + chr1.4:20609090-20609109 None:intergenic 25.0%
! AGTTTAAGAGATATTGGATT+TGG + chr1.4:20608518-20608537 None:intergenic 25.0%
! ATAGTAATTGTGAATGATAG+TGG + chr1.4:20609996-20610015 None:intergenic 25.0%
! ATATCTCTTAAACTTCCAAA+TGG - chr1.4:20608524-20608543 MS.gene052828:intron 25.0%
! ATATGAATGAGTTATTGCAA+GGG - chr1.4:20609805-20609824 MS.gene052828:intron 25.0%
! ATGTTAATGTTACTGTCATT+AGG - chr1.4:20611461-20611480 MS.gene052828:intron 25.0%
! ATTAACAAGAAAGACATTTG+GGG + chr1.4:20609500-20609519 None:intergenic 25.0%
! CACTATTACTGAGAAAAAAA+AGG + chr1.4:20610618-20610637 None:intergenic 25.0%
! CATAACAAATACTTGTTCAA+CGG - chr1.4:20611525-20611544 MS.gene052828:intron 25.0%
! CTATTAACAAGAAAGACATT+TGG + chr1.4:20609502-20609521 None:intergenic 25.0%
! TATCTCTTAAACTTCCAAAT+GGG - chr1.4:20608525-20608544 MS.gene052828:intron 25.0%
! TGTTAATGTTACTGTCATTA+GGG - chr1.4:20611462-20611481 MS.gene052828:intron 25.0%
! TTAAACACACTATCATCTAT+TGG + chr1.4:20612291-20612310 None:intergenic 25.0%
! TTTGGAAGTTTAAGAGATAT+TGG + chr1.4:20608524-20608543 None:intergenic 25.0%
! TTTGTTTCATTTAAACCAAC+GGG + chr1.4:20613353-20613372 None:intergenic 25.0%
!! AATAGATGATAGTGTGTTTA+AGG - chr1.4:20612290-20612309 MS.gene052828:intron 25.0%
!! ATAGATGATAGTGTGTTTAA+GGG - chr1.4:20612291-20612310 MS.gene052828:intron 25.0%
!! ATCCAGAATAAATTTTCGAA+TGG - chr1.4:20611046-20611065 MS.gene052828:CDS 25.0%
!! ATGTACTTTGGTAATTTGTA+TGG + chr1.4:20609078-20609097 None:intergenic 25.0%
!! CAAAATTTGAGATGAACTAA+GGG + chr1.4:20609027-20609046 None:intergenic 25.0%
!! CTTTGTTTCATTTAAACCAA+CGG + chr1.4:20613354-20613373 None:intergenic 25.0%
!! TCCAGAATAAATTTTCGAAT+GGG - chr1.4:20611047-20611066 MS.gene052828:CDS 25.0%
!! TGATTTTCTTTTTCTTGAAG+GGG + chr1.4:20610156-20610175 None:intergenic 25.0%
!! TTTGATTGATTGTAGTTTGT+TGG + chr1.4:20611315-20611334 None:intergenic 25.0%
!!! AATAAAGACATTGATTTAGC+TGG + chr1.4:20610219-20610238 None:intergenic 25.0%
!!! ATAAAGACATTGATTTAGCT+GGG + chr1.4:20610218-20610237 None:intergenic 25.0%
!!! ATTGTCATGTTTACCTTTTT+TGG - chr1.4:20611795-20611814 MS.gene052828:intron 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG - chr1.4:20608638-20608657 MS.gene052828:CDS 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG - chr1.4:20609220-20609239 MS.gene052828:intron 25.0%
!!! TGCTTGTTTTGTCATTTTAA+GGG - chr1.4:20613263-20613282 MS.gene052828:CDS 25.0%
!!! TTGCTTGTTTTGTCATTTTA+AGG - chr1.4:20613262-20613281 MS.gene052828:CDS 25.0%
AAACAACAGTAATAAGTGGA+CGG + chr1.4:20611654-20611673 None:intergenic 30.0%
AAATGCACAAAAACTGAAGA+TGG - chr1.4:20610484-20610503 MS.gene052828:intron 30.0%
AACGCAATAAAATAGAGCTT+GGG + chr1.4:20611429-20611448 None:intergenic 30.0%
AACTAGAAGAAGAGACATTT+AGG - chr1.4:20609644-20609663 MS.gene052828:intron 30.0%
AATAATATGAGAGTGAAGCT+AGG + chr1.4:20610550-20610569 None:intergenic 30.0%
AATGCACAAAAACTGAAGAT+GGG - chr1.4:20610485-20610504 MS.gene052828:intron 30.0%
ACATGAATGAGTTATTGCAA+GGG - chr1.4:20610958-20610977 MS.gene052828:CDS 30.0%
ACTATACGAACTGATTGTAT+TGG - chr1.4:20610674-20610693 MS.gene052828:intron 30.0%
ATAGTAATCGTGAATGAAAG+TGG + chr1.4:20611152-20611171 None:intergenic 30.0%
CATATGAATGAGTTATTGCA+AGG - chr1.4:20609804-20609823 MS.gene052828:intron 30.0%
CGTAAAAGATATGGAATATG+CGG - chr1.4:20612704-20612723 MS.gene052828:CDS 30.0%
CTATTAACAAAGGAGACATT+TGG + chr1.4:20610717-20610736 None:intergenic 30.0%
GAATTTACATGAGATGTTCA+AGG - chr1.4:20612885-20612904 MS.gene052828:intron 30.0%
GAGATATGAAAAGCCAAAAA+AGG + chr1.4:20611811-20611830 None:intergenic 30.0%
GATAATATGAGAGTGAAACT+AGG + chr1.4:20609338-20609357 None:intergenic 30.0%
GTAAAAGATATGGAATATGC+GGG - chr1.4:20612705-20612724 MS.gene052828:CDS 30.0%
TACATGAATGAGTTATTGCA+AGG - chr1.4:20610957-20610976 MS.gene052828:CDS 30.0%
TAGCTTCACTCTCATATTAT+TGG - chr1.4:20610549-20610568 MS.gene052828:intron 30.0%
TATAATGAACATCTCGACTA+TGG - chr1.4:20613116-20613135 MS.gene052828:CDS 30.0%
TATATTTAGTGGAAATTCCG+TGG - chr1.4:20613052-20613071 MS.gene052828:intron 30.0%
TATCTCTCTACAAAATTCCT+TGG + chr1.4:20608482-20608501 None:intergenic 30.0%
TATTCTCTAATTACGAGACT+CGG - chr1.4:20613305-20613324 MS.gene052828:CDS 30.0%
TATTCTTTCGAAAACCAACT+AGG + chr1.4:20609784-20609803 None:intergenic 30.0%
TCCCATTCGAAAATTTATTC+TGG + chr1.4:20611051-20611070 None:intergenic 30.0%
TCTTATAACATCATCAGACA+AGG - chr1.4:20612909-20612928 MS.gene052828:intron 30.0%
TGTTGAAGGTGATAATAGAT+TGG - chr1.4:20610579-20610598 MS.gene052828:intron 30.0%
TTGATCTTCAAATGTGTCTT+TGG + chr1.4:20609621-20609640 None:intergenic 30.0%
TTTATGCACTGAATCATCTT+AGG + chr1.4:20613527-20613546 None:intergenic 30.0%
! AAATTATTTTCGGCATCTGA+AGG + chr1.4:20610427-20610446 None:intergenic 30.0%
! AACTATTTTCAGCATTTGGA+AGG + chr1.4:20609205-20609224 None:intergenic 30.0%
! AAGAAGCATGGTATATTTAG+TGG - chr1.4:20613041-20613060 MS.gene052828:intron 30.0%
! AATTATTTTCGGCATCTGAA+GGG + chr1.4:20610426-20610445 None:intergenic 30.0%
! ATAAATTTTCGAATGGGAAG+TGG - chr1.4:20611053-20611072 MS.gene052828:CDS 30.0%
! ATCTGAAGGGTACAAAAAAA+AGG + chr1.4:20610413-20610432 None:intergenic 30.0%
! ATGGTATTTGGCTTCAAAAT+TGG - chr1.4:20608582-20608601 MS.gene052828:CDS 30.0%
! CCAAAATTTGAGATGAACTA+AGG + chr1.4:20609028-20609047 None:intergenic 30.0%
! CCTTAGTTCATCTCAAATTT+TGG - chr1.4:20609025-20609044 MS.gene052828:CDS 30.0%
! CGCATATTCCATATCTTTTA+CGG + chr1.4:20612706-20612725 None:intergenic 30.0%
! CGTTGAACAAGTATTTGTTA+TGG + chr1.4:20611527-20611546 None:intergenic 30.0%
! GCATATTCCATATCTTTTAC+GGG + chr1.4:20612705-20612724 None:intergenic 30.0%
! GGAATTTTGTAGAGAGATAT+TGG - chr1.4:20608483-20608502 MS.gene052828:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG - chr1.4:20608642-20608661 MS.gene052828:CDS 30.0%
! TTTTTGTGCATTTCTTATCC+CGG + chr1.4:20610477-20610496 None:intergenic 30.0%
!! AGTATTTGTTATGGTTACGT+CGG + chr1.4:20611518-20611537 None:intergenic 30.0%
!! ATGCGCTTTTGTAATTTGTA+TGG + chr1.4:20610286-20610305 None:intergenic 30.0%
!! ATTTTGGAGATGGAATTTCA+AGG - chr1.4:20612730-20612749 MS.gene052828:CDS 30.0%
!! CGTTGGTTTAAATGAAACAA+AGG - chr1.4:20613352-20613371 MS.gene052828:CDS 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG - chr1.4:20608641-20608660 MS.gene052828:CDS 30.0%
!!! GCTTGTTTTGTCATTTTAAG+GGG - chr1.4:20613264-20613283 MS.gene052828:CDS 30.0%
AAAATCAGAAAGCAGTCCTA+AGG - chr1.4:20613403-20613422 MS.gene052828:CDS 35.0%
AAACTAAAAGATCTCCGCAT+CGG + chr1.4:20608628-20608647 None:intergenic 35.0%
AACAACAGTAATAAGTGGAC+GGG + chr1.4:20611653-20611672 None:intergenic 35.0%
AACCTCATGATGAAGGATAA+TGG - chr1.4:20612194-20612213 MS.gene052828:intron 35.0%
AAGGAACATGACTTGAAAGT+TGG - chr1.4:20609936-20609955 MS.gene052828:intron 35.0%
ACAAATACTTGTTCAACGGT+CGG - chr1.4:20611529-20611548 MS.gene052828:intron 35.0%
ACGCAATAAAATAGAGCTTG+GGG + chr1.4:20611428-20611447 None:intergenic 35.0%
AGAGAGAAGAAACAAGAACA+GGG - chr1.4:20611919-20611938 MS.gene052828:intron 35.0%
AGTGAAACTAGGATTCTCAT+TGG + chr1.4:20609327-20609346 None:intergenic 35.0%
ATAATACCTTGAAACTGCTC+TGG + chr1.4:20610044-20610063 None:intergenic 35.0%
ATTCATGCATGAAATGTGCA+AGG + chr1.4:20609714-20609733 None:intergenic 35.0%
CAAATCAGTTTCACATGGTT+TGG - chr1.4:20611581-20611600 MS.gene052828:intron 35.0%
CAACGCAATAAAATAGAGCT+TGG + chr1.4:20611430-20611449 None:intergenic 35.0%
CACACACATAGCTATATACA+TGG + chr1.4:20612959-20612978 None:intergenic 35.0%
CTAAAAGTGATATATCTGCC+AGG - chr1.4:20612522-20612541 MS.gene052828:intron 35.0%
GCTTTGATTAAAGATGATCG+AGG + chr1.4:20613474-20613493 None:intergenic 35.0%
GTCAGTGTGCAAAATGAATT+GGG - chr1.4:20608547-20608566 MS.gene052828:intron 35.0%
GTCATAAAACCTCATGATGA+AGG - chr1.4:20612187-20612206 MS.gene052828:intron 35.0%
GTGAAACTAGGATTCTCATT+GGG + chr1.4:20609326-20609345 None:intergenic 35.0%
GTTGCTTACTGTTAATGTTG+TGG + chr1.4:20613505-20613524 None:intergenic 35.0%
TACATTAATAAAGTGGGTCC+AGG + chr1.4:20610317-20610336 None:intergenic 35.0%
TACTATCATCTCAACCACAA+AGG - chr1.4:20611166-20611185 MS.gene052828:intron 35.0%
TACTATTATCCCAACCACAA+AGG - chr1.4:20610010-20610029 MS.gene052828:intron 35.0%
TCTTGATGAACCTTGAGAAT+TGG + chr1.4:20613442-20613461 None:intergenic 35.0%
TGAGACAAATCAGTTTCACA+TGG - chr1.4:20611576-20611595 MS.gene052828:intron 35.0%
TGATTAAAGATGATCGAGGA+AGG + chr1.4:20613470-20613489 None:intergenic 35.0%
TGTGAGAGATTGCAAAGTAA+AGG - chr1.4:20613166-20613185 MS.gene052828:CDS 35.0%
TGTGCAAAATCATGTGTTCA+AGG - chr1.4:20613220-20613239 MS.gene052828:CDS 35.0%
TTATCACCATATCACGTTGA+AGG - chr1.4:20609353-20609372 MS.gene052828:CDS 35.0%
TTATTGGCATGTCATGTTGA+AGG - chr1.4:20610565-20610584 MS.gene052828:intron 35.0%
TTCTGTCAAAATGGAATGAG+CGG - chr1.4:20611619-20611638 MS.gene052828:intron 35.0%
TTTAAACCATGACCTGAAAC+AGG - chr1.4:20610908-20610927 MS.gene052828:CDS 35.0%
TTTATACCATGACCTGAAAC+AGG - chr1.4:20609753-20609772 MS.gene052828:intron 35.0%
! AAGGCAACAATTAGAAGTGT+TGG - chr1.4:20609828-20609847 MS.gene052828:intron 35.0%
! ACTTACCAGAAACTTTTTGC+TGG + chr1.4:20608946-20608965 None:intergenic 35.0%
! AGAGGCTTTCATTTTACTAG+AGG - chr1.4:20609445-20609464 MS.gene052828:intron 35.0%
! CAAGCTCTATTTTATTGCGT+TGG - chr1.4:20611428-20611447 MS.gene052828:intron 35.0%
! CTTACCAGAAACTTTTTGCT+GGG + chr1.4:20608945-20608964 None:intergenic 35.0%
! GTGTTGTCTCTGATTTTTCT+TGG + chr1.4:20612683-20612702 None:intergenic 35.0%
! TAAAGTTTTGCAGAGGCTAA+TGG - chr1.4:20609227-20609246 MS.gene052828:intron 35.0%
! TCATGATGAAGGATAATGGT+GGG - chr1.4:20612198-20612217 MS.gene052828:intron 35.0%
! TGAAGTTTTGCAAAGGCTAA+TGG - chr1.4:20610448-20610467 MS.gene052828:intron 35.0%
! TTCTGATTTTCCAACCTTGT+CGG + chr1.4:20613393-20613412 None:intergenic 35.0%
! TTTGGCTTCAAAATTGGAAG+AGG - chr1.4:20608588-20608607 MS.gene052828:CDS 35.0%
!! AACAATTAGAAGTGTTGGTG+AGG - chr1.4:20609833-20609852 MS.gene052828:intron 35.0%
!! ATGAGGTTTTATGACAGCAA+GGG + chr1.4:20612182-20612201 None:intergenic 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG - chr1.4:20609917-20609936 MS.gene052828:intron 35.0%
!!! AAAAGCGCATGTTTTAATCC+TGG - chr1.4:20610296-20610315 MS.gene052828:intron 35.0%
!!! AGTAGTTTTGTAATGACGCT+TGG - chr1.4:20609897-20609916 MS.gene052828:intron 35.0%
AATCTGACCCTCCTTTGTAT+TGG + chr1.4:20608652-20608671 None:intergenic 40.0%
ACATACATTGGACAGTGTGT+AGG + chr1.4:20611742-20611761 None:intergenic 40.0%
ACATGTCCACAAACTTCTCA+GGG + chr1.4:20612643-20612662 None:intergenic 40.0%
AGAGATTGCAAAGTAAAGGC+TGG - chr1.4:20613170-20613189 MS.gene052828:CDS 40.0%
AGGGATCTACTGAAGAAGTT+GGG + chr1.4:20612624-20612643 None:intergenic 40.0%
AGTGAAGCTAGGATTCTCAT+TGG + chr1.4:20610539-20610558 None:intergenic 40.0%
ATGAACATCTCGACTATGGT+TGG - chr1.4:20613120-20613139 MS.gene052828:CDS 40.0%
ATGTATGTGTGCCATCAAAC+AGG - chr1.4:20611754-20611773 MS.gene052828:intron 40.0%
ATTCTCATTGGGATGCTCAA+TGG + chr1.4:20609315-20609334 None:intergenic 40.0%
CACCATTATCCTTCATCATG+AGG + chr1.4:20612199-20612218 None:intergenic 40.0%
CAGAGAGAAGAAACAAGAAC+AGG - chr1.4:20611918-20611937 MS.gene052828:intron 40.0%
CGCAATAAAATAGAGCTTGG+GGG + chr1.4:20611427-20611446 None:intergenic 40.0%
CGTTGAAGGTGATAGAAGAT+TGG - chr1.4:20609367-20609386 MS.gene052828:CDS 40.0%
CTACTACTGTTACACCTCAA+CGG - chr1.4:20608882-20608901 MS.gene052828:CDS 40.0%
CTATCACCTTCAACGTGATA+TGG + chr1.4:20609362-20609381 None:intergenic 40.0%
GAATGAGTTATTGCAAGGGA+AGG - chr1.4:20609809-20609828 MS.gene052828:intron 40.0%
GACAACACCCGTAAAAGATA+TGG - chr1.4:20612695-20612714 MS.gene052828:CDS 40.0%
GACATGATTCCTTTGTGGTT+GGG + chr1.4:20610022-20610041 None:intergenic 40.0%
GAGATGAGAGATATACAGAG+AGG - chr1.4:20611960-20611979 MS.gene052828:intron 40.0%
GGTCAGTGTGCAAAATGAAT+TGG - chr1.4:20608546-20608565 MS.gene052828:intron 40.0%
GTGAAGCTAGGATTCTCATT+GGG + chr1.4:20610538-20610557 None:intergenic 40.0%
GTTATGGTTACGTCGGATTT+CGG + chr1.4:20611511-20611530 None:intergenic 40.0%
GTTGTGGGTAGTGTAAATTG+TGG - chr1.4:20612220-20612239 MS.gene052828:intron 40.0%
TAAGATACATCCGACAAGGT+TGG - chr1.4:20613380-20613399 MS.gene052828:CDS 40.0%
TCACTAAGATACATCCGACA+AGG - chr1.4:20613376-20613395 MS.gene052828:CDS 40.0%
TGATGAACCTTGAGAATTGG+AGG + chr1.4:20613439-20613458 None:intergenic 40.0%
TGTATGTGTGCCATCAAACA+GGG - chr1.4:20611755-20611774 MS.gene052828:intron 40.0%
TTGCAAAGGCTAATGGAAAC+CGG - chr1.4:20610455-20610474 MS.gene052828:intron 40.0%
TTGTCAATGTTAGTCCGTTG+AGG + chr1.4:20608899-20608918 None:intergenic 40.0%
TTTGTACCAAACTGTGTGAG+AGG - chr1.4:20609427-20609446 MS.gene052828:intron 40.0%
! AGTAGCAATGCCATTTGAGT+TGG + chr1.4:20608864-20608883 None:intergenic 40.0%
! ATGGAATATGCGGGCAATTT+TGG - chr1.4:20612714-20612733 MS.gene052828:CDS 40.0%
! ATGGTTGGTTCACTAAAGGT+TGG - chr1.4:20613135-20613154 MS.gene052828:CDS 40.0%
! ATTTTCGAATGGGAAGTGGT+TGG - chr1.4:20611057-20611076 MS.gene052828:CDS 40.0%
! ATTTTGCACACTGACCCATT+TGG + chr1.4:20608542-20608561 None:intergenic 40.0%
! CAGTTTCACATGGTTTGGAA+CGG - chr1.4:20611586-20611605 MS.gene052828:intron 40.0%
! CTCATGATGAAGGATAATGG+TGG - chr1.4:20612197-20612216 MS.gene052828:intron 40.0%
! CTGATTTTTCTTGGACTCCT+TGG + chr1.4:20612674-20612693 None:intergenic 40.0%
! CTGTTCTTGTTTCTTCTCTC+TGG + chr1.4:20611920-20611939 None:intergenic 40.0%
! GACTATGGTTGGTTCACTAA+AGG - chr1.4:20613131-20613150 MS.gene052828:CDS 40.0%
! GTTTGATGGCACACATACAT+TGG + chr1.4:20611754-20611773 None:intergenic 40.0%
! GTTTTGTAATGACGCTTGGT+TGG - chr1.4:20609901-20609920 MS.gene052828:intron 40.0%
! TTGTTTCTTCTCTCTGGTAG+TGG + chr1.4:20611914-20611933 None:intergenic 40.0%
!! AATTAGAAGTGTTGGTGAGG+AGG - chr1.4:20609836-20609855 MS.gene052828:intron 40.0%
!! CATGAGGTTTTATGACAGCA+AGG + chr1.4:20612183-20612202 None:intergenic 40.0%
!! GTGGTTGGAAGTCATTTTCA+CGG - chr1.4:20611072-20611091 MS.gene052828:CDS 40.0%
!! TGAGGTTTTATGACAGCAAG+GGG + chr1.4:20612181-20612200 None:intergenic 40.0%
!! TGGTTGGAAGTCATTTTCAC+GGG - chr1.4:20611073-20611092 MS.gene052828:CDS 40.0%
AAACTGACGTTGAAACGGTC+GGG - chr1.4:20612073-20612092 MS.gene052828:intron 45.0%
AACTAGGTAACGCCTGTTTC+AGG + chr1.4:20609768-20609787 None:intergenic 45.0%
AAGAGAACCGCCAACTCAAA+TGG - chr1.4:20608851-20608870 MS.gene052828:CDS 45.0%
AATTCCGTGGAGTTGAGAGT+AGG - chr1.4:20613065-20613084 MS.gene052828:intron 45.0%
AGTGAGCTGTTGAAGAAGCA+TGG - chr1.4:20613029-20613048 MS.gene052828:intron 45.0%
ATCTCAACCACAAAGGAACC+AGG - chr1.4:20611173-20611192 MS.gene052828:intron 45.0%
ATTCCGTGGAGTTGAGAGTA+GGG - chr1.4:20613066-20613085 MS.gene052828:intron 45.0%
CACATGTCCACAAACTTCTC+AGG + chr1.4:20612644-20612663 None:intergenic 45.0%
CAGGGATCTACTGAAGAAGT+TGG + chr1.4:20612625-20612644 None:intergenic 45.0%
CGAAAGCGGTTCTGTCAAAA+TGG - chr1.4:20611610-20611629 MS.gene052828:intron 45.0%
CTCTGGACATGATTCCTTTG+TGG + chr1.4:20610027-20610046 None:intergenic 45.0%
GAAACTGACGTTGAAACGGT+CGG - chr1.4:20612072-20612091 MS.gene052828:intron 45.0%
GACCGTTTCAACGTCAGTTT+CGG + chr1.4:20612073-20612092 None:intergenic 45.0%
GATGCTTCCTCCAATTCTCA+AGG - chr1.4:20613429-20613448 MS.gene052828:CDS 45.0%
GCAACCCAGCAAAAAGTTTC+TGG - chr1.4:20608938-20608957 MS.gene052828:CDS 45.0%
GGACATGATTCCTTTGTGGT+TGG + chr1.4:20610023-20610042 None:intergenic 45.0%
GGGATCTACTGAAGAAGTTG+GGG + chr1.4:20612623-20612642 None:intergenic 45.0%
GGTCTAACGGAATAACAGGT+GGG + chr1.4:20612041-20612060 None:intergenic 45.0%
GGTTCACGTGTTCTGATCTA+CGG - chr1.4:20612099-20612118 MS.gene052828:intron 45.0%
GTAGATCCCTGAGAAGTTTG+TGG - chr1.4:20612634-20612653 MS.gene052828:intron 45.0%
GTTCACGTGTTCTGATCTAC+GGG - chr1.4:20612100-20612119 MS.gene052828:intron 45.0%
TAATGGAAACACAGGAGGCA+TGG - chr1.4:20609244-20609263 MS.gene052828:intron 45.0%
TCAAGACACACCCTGTTTGA+TGG + chr1.4:20611768-20611787 None:intergenic 45.0%
TCATGTCCAGAGCAGTTTCA+AGG - chr1.4:20610035-20610054 MS.gene052828:intron 45.0%
TCTGATCTACGGGTGTTCTT+CGG - chr1.4:20612110-20612129 MS.gene052828:intron 45.0%
TGAAACAGGCGATACCTAGT+TGG - chr1.4:20610922-20610941 MS.gene052828:CDS 45.0%
TGAAACAGGCGTTACCTAGT+TGG - chr1.4:20609767-20609786 MS.gene052828:intron 45.0%
TGAAAGCCTCTCACACAGTT+TGG + chr1.4:20609436-20609455 None:intergenic 45.0%
TGCAAAGGCTAATGGAAACC+GGG - chr1.4:20610456-20610475 MS.gene052828:intron 45.0%
TGCAACGCAGTGATGGTATT+TGG - chr1.4:20608570-20608589 MS.gene052828:CDS 45.0%
TGCTTCTTCAACAGCTCACT+TGG + chr1.4:20613029-20613048 None:intergenic 45.0%
TGGACATGTGCAGAAAACCA+AGG - chr1.4:20612654-20612673 MS.gene052828:intron 45.0%
TTCTTCGGTGAGCAGTTGTT+GGG - chr1.4:20612125-20612144 MS.gene052828:intron 45.0%
TTGGTGAGGAGGATAGAACA+TGG - chr1.4:20611000-20611019 MS.gene052828:CDS 45.0%
! AACTAGGTATCGCCTGTTTC+AGG + chr1.4:20610923-20610942 None:intergenic 45.0%
! AATGGAAACACAGGAGGCAT+GGG - chr1.4:20609245-20609264 MS.gene052828:intron 45.0%
! CAGTAATAAGTGGACGGGTT+CGG + chr1.4:20611648-20611667 None:intergenic 45.0%
! CGGGAACATAACTTGCAAGT+CGG - chr1.4:20611092-20611111 MS.gene052828:CDS 45.0%
! GCGGTTCTCTTTTTCTTGAG+GGG + chr1.4:20608842-20608861 None:intergenic 45.0%
! GGAAGGAACATGGTTTGTAG+AGG - chr1.4:20613088-20613107 MS.gene052828:intron 45.0%
! GGCGGTTCTCTTTTTCTTGA+GGG + chr1.4:20608843-20608862 None:intergenic 45.0%
! TGGCGGTTCTCTTTTTCTTG+AGG + chr1.4:20608844-20608863 None:intergenic 45.0%
! TTTGCAAGTTTGCTCCGATG+CGG - chr1.4:20608611-20608630 MS.gene052828:CDS 45.0%
!! AGCAATGCCATTTGAGTTGG+CGG + chr1.4:20608861-20608880 None:intergenic 45.0%
!! GAAGGATAATGGTGGGTTGT+GGG - chr1.4:20612205-20612224 MS.gene052828:intron 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG - chr1.4:20609839-20609858 MS.gene052828:intron 45.0%
!! TATGCGGGCAATTTTGGAGA+TGG - chr1.4:20612720-20612739 MS.gene052828:CDS 45.0%
!! TGAAGGATAATGGTGGGTTG+TGG - chr1.4:20612204-20612223 MS.gene052828:intron 45.0%
!! TGGAGGAAGCATCATACCTT+AGG + chr1.4:20613422-20613441 None:intergenic 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG - chr1.4:20609838-20609857 MS.gene052828:intron 45.0%
!! TTCTTCTCTCTGGTAGTGGT+GGG + chr1.4:20611910-20611929 None:intergenic 45.0%
!! TTTCTTCTCTCTGGTAGTGG+TGG + chr1.4:20611911-20611930 None:intergenic 45.0%
!! AAAAATATACATAAATAAAA+TGG + chr1.4:20609117-20609136 None:intergenic 5.0%
!! AAAATATACATAAATAAAAT+GGG + chr1.4:20609116-20609135 None:intergenic 5.0%
AACCACAAAGGAACCAGGCT+CGG - chr1.4:20611178-20611197 MS.gene052828:intron 50.0%
AATTGGGTGCAACGCAGTGA+TGG - chr1.4:20608563-20608582 MS.gene052828:CDS 50.0%
CCAGGCTCGGAAAAGTTTCA+AGG - chr1.4:20611191-20611210 MS.gene052828:intron 50.0%
CGCCGAAACTGACGTTGAAA+CGG - chr1.4:20612068-20612087 MS.gene052828:intron 50.0%
CGTTTCAACGTCAGTTTCGG+CGG + chr1.4:20612070-20612089 None:intergenic 50.0%
GACGGGTCTAACGGAATAAC+AGG + chr1.4:20612045-20612064 None:intergenic 50.0%
GAGGCTAATGGAAACACAGG+AGG - chr1.4:20609239-20609258 MS.gene052828:intron 50.0%
GCAGAGGCTAATGGAAACAC+AGG - chr1.4:20609236-20609255 MS.gene052828:intron 50.0%
GGGTCTAACGGAATAACAGG+TGG + chr1.4:20612042-20612061 None:intergenic 50.0%
GTGTGTAGAGTGTGTGTTCG+CGG - chr1.4:20612315-20612334 MS.gene052828:intron 50.0%
GTTCAACGGTCGGATGTGTA+CGG - chr1.4:20611539-20611558 MS.gene052828:intron 50.0%
GTTCTTCGGTGAGCAGTTGT+TGG - chr1.4:20612124-20612143 MS.gene052828:intron 50.0%
GTTTCAACGTCAGTTTCGGC+GGG + chr1.4:20612069-20612088 None:intergenic 50.0%
TAACGGAATAACAGGTGGGC+CGG + chr1.4:20612037-20612056 None:intergenic 50.0%
TGAAAGCCTCTCACACAGCT+AGG + chr1.4:20610650-20610669 None:intergenic 50.0%
TGAGAGTAGGGGAAGGAACA+TGG - chr1.4:20613078-20613097 MS.gene052828:intron 50.0%
TGCAACTGTGTTCTTCCCGT+TGG - chr1.4:20613335-20613354 MS.gene052828:CDS 50.0%
TGGTTACGTCGGATTTCGGT+CGG + chr1.4:20611507-20611526 None:intergenic 50.0%
TTCAACGGTCGGATGTGTAC+GGG - chr1.4:20611540-20611559 MS.gene052828:intron 50.0%
TTCCCCTACTCTCAACTCCA+CGG + chr1.4:20613072-20613091 None:intergenic 50.0%
TTCCGTGGAGTTGAGAGTAG+GGG - chr1.4:20613067-20613086 MS.gene052828:intron 50.0%
TTTGTGCCTAGCTGTGTGAG+AGG - chr1.4:20610641-20610660 MS.gene052828:intron 50.0%
! CCTTGAAACTTTTCCGAGCC+TGG + chr1.4:20611194-20611213 None:intergenic 50.0%
! GTAACGCCTGTTTCAGGTCA+TGG + chr1.4:20609762-20609781 None:intergenic 50.0%
! GTATCGCCTGTTTCAGGTCA+TGG + chr1.4:20610917-20610936 None:intergenic 50.0%
! TGGTTTGGAACGGACGAAAG+CGG - chr1.4:20611596-20611615 MS.gene052828:intron 50.0%
AACGGAATAACAGGTGGGCC+GGG + chr1.4:20612036-20612055 None:intergenic 55.0%
GACGTTGAAACGGTCGGGAA+TGG - chr1.4:20612078-20612097 MS.gene052828:intron 55.0%
GTGGAGTTGAGAGTAGGGGA+AGG - chr1.4:20613071-20613090 MS.gene052828:intron 55.0%
TTCCGAGCCTGGTTCCTTTG+TGG + chr1.4:20611183-20611202 None:intergenic 55.0%
! GTGTTGGTGAGGACAGGGTA+TGG - chr1.4:20609844-20609863 MS.gene052828:intron 55.0%
! TACAACCGAGCCAAAGCACC+CGG - chr1.4:20612015-20612034 MS.gene052828:intron 55.0%
!! AGCTTGGGGGACTAGCTGAA+GGG + chr1.4:20611414-20611433 None:intergenic 55.0%
ACGTCAGTTTCGGCGGGTGA+CGG + chr1.4:20612063-20612082 None:intergenic 60.0%
GGTCGGATGTGTACGGGCTT+CGG - chr1.4:20611546-20611565 MS.gene052828:intron 60.0%
TGACAGCAAGGGGTGAGCAC+CGG + chr1.4:20612171-20612190 None:intergenic 60.0%
!! GAGCTTGGGGGACTAGCTGA+AGG + chr1.4:20611415-20611434 None:intergenic 60.0%
AACAGGTGGGCCGGGTGCTT+TGG + chr1.4:20612028-20612047 None:intergenic 65.0%
CGAATCCGCCCGTAACCGAC+CGG - chr1.4:20612149-20612168 MS.gene052828:intron 65.0%
CGTCAGTTTCGGCGGGTGAC+GGG + chr1.4:20612062-20612081 None:intergenic 65.0%
TCTCACACTTCACGCGCGCG+TGG + chr1.4:20611692-20611711 None:intergenic 65.0%
! CGGTCGGTTACGGGCGGATT+CGG + chr1.4:20612151-20612170 None:intergenic 65.0%
!! AGCAAGGGGTGAGCACCGGT+CGG + chr1.4:20612167-20612186 None:intergenic 65.0%
!! GGGTGAGCACCGGTCGGTTA+CGG + chr1.4:20612161-20612180 None:intergenic 65.0%
!! GGTGAGCACCGGTCGGTTAC+GGG + chr1.4:20612160-20612179 None:intergenic 65.0%
!! TCGGCGGGTGACGGGTCTAA+CGG + chr1.4:20612054-20612073 None:intergenic 65.0%
GTGGGCCGGGTGCTTTGGCT+CGG + chr1.4:20612023-20612042 None:intergenic 70.0%
!! GAGCACCGGTCGGTTACGGG+CGG + chr1.4:20612157-20612176 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 20608473 20613600 20608473 ID=MS.gene052828
chr1.4 mRNA 20608473 20613600 20608473 ID=MS.gene052828.t1;Parent=MS.gene052828
chr1.4 exon 20613114 20613600 20613114 ID=MS.gene052828.t1.exon1;Parent=MS.gene052828.t1
chr1.4 CDS 20613114 20613600 20613114 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20612685 20612833 20612685 ID=MS.gene052828.t1.exon2;Parent=MS.gene052828.t1
chr1.4 CDS 20612685 20612833 20612685 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20610861 20611143 20610861 ID=MS.gene052828.t1.exon3;Parent=MS.gene052828.t1
chr1.4 CDS 20610861 20611143 20610861 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20609293 20609406 20609293 ID=MS.gene052828.t1.exon4;Parent=MS.gene052828.t1
chr1.4 CDS 20609293 20609406 20609293 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20609143 20609201 20609143 ID=MS.gene052828.t1.exon5;Parent=MS.gene052828.t1
chr1.4 CDS 20609143 20609201 20609143 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20608832 20609059 20608832 ID=MS.gene052828.t1.exon6;Parent=MS.gene052828.t1
chr1.4 CDS 20608832 20609059 20608832 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20608558 20608662 20608558 ID=MS.gene052828.t1.exon7;Parent=MS.gene052828.t1
chr1.4 CDS 20608558 20608662 20608558 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
chr1.4 exon 20608473 20608481 20608473 ID=MS.gene052828.t1.exon8;Parent=MS.gene052828.t1
chr1.4 CDS 20608473 20608481 20608473 ID=cds.MS.gene052828.t1;Parent=MS.gene052828.t1
Gene Sequence

>MS.gene052828

ATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTACCAAATCCAATATCTCTTAAACTTCCAAATGGGTCAGTGTGCAAAATGAATTGGGTGCAACGCAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCAAGTTTGCTCCGATGCGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTCAATCAGAAATTGACTATTCAAGTATGAGATGCAACGACGATCAAGAAAATACTAAAGAGAGTGATGATGATGATGATGATGATGACAACGACGATTATGAGTGTGTTGAGATTCCTAATGACATTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAACCGCCAACTCAAATGGCATTGCTACTACTACTGTTACACCTCAACGGACTAACATTGACAAGAGAAAAACTAATATCAATGCAACCCAGCAAAAAGTTTCTGGTAAGTTATTCTACTTCCTTTTAATTATTCATCTGTTTATGAGCAGAATATGCTTTTAATTAGTCCCTTAGTTCATCTCAAATTTTGGTTTTAGTCTTTCTTTCCACTTTTTAATCCATACAAATTACCAAAGTACATGTTTTTAGTTCTATACCCATTTTATTTATGTATATTTTTTAAGATTAAATTAATTTTCAAGACTGTCATACAAAAAAAATCAAGACACAAACTTTTATTTTGTACCTTCCAAATGCTGAAAATAGTTTTTAAAGTTTTGCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTGCGCCATTGAGCATCCCAATGAGAATCCTAGTTTCACTCTCATATTATCACCATATCACGTTGAAGGTGATAGAAGATTGGTATGTTTCCTATACTACTTTTTCAGTAATAGTGACATTTTGTACCAAACTGTGTGAGAGGCTTTCATTTTACTAGAGGAACTGAATGTATTGAGACTACAAACAAATCCCCAAATGTCTTTCTTGTTAATAGTTTTATTGAAAAAACTTACTAATAGAAAACATATTCAAGGAGTAATGAAATTTATTCATTAAATTATTAGCAAAAGAAAAAAGTATAGCAAACATACTAAAGACACATTTGAAGATCAAAATAACTAGAAGAAGAGACATTTAGGCATATTTTTATAATTTTGATACATTTAAGTACTGTTTGAATAAGCCTTGCACATTTCATGCATGAATATATTTTAATCAATATCTGTTTATACCATGACCTGAAACAGGCGTTACCTAGTTGGTTTTCGAAAGAATACATATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGTATGGTACGTGACATTAAACTTTCATAAAAGCAAGAGTAGTTTTGTAATGACGCTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAAGTTGAGATGATGCAACGCGAACCACTATCATTCACAATTACTATTATCCCAACCACAAAGGAATCATGTCCAGAGCAGTTTCAAGGTATTATATGAGATGCAACGACGTTAAAGAAAATACTAAAGATTGTGATGATGATTATGATGATGAGATTCCTAGTGATAATTAAAATAATAAAATCCCCTTCAAGAAAAAGAAAATCAATTCAAACGACATTGCTACTACTGCTGCTATCAATGCAACCCAGCTAAATCAATGTCTTTATTTCAAATTTTGTTTTATGTCATTCTTTTTCTACCCACTTTTTAATCCATACAAATTACAAAAGCGCATGTTTTAATCCTGGACCCACTTTATTAATGTATATTTTTTATTTGTTCTTTTTTAAGATTTAATTCATTTTCAAGACTGTCATACAAAAGAAATCAACACATGAACCTTTTTTTTGTACCCTTCAGATGCCGAAAATAATTTTTGAAGTTTTGCAAAGGCTAATGGAAACCGGGATAAGAAATGCACAAAAACTGAAGATGGGAATGAGAGAAACTGCAAAAATTCTCATCCCAATGAGAATCCTAGCTTCACTCTCATATTATTGGCATGTCATGTTGAAGGTGATAATAGATTGGTACGTTTCTTATACCTTTTTTTTCTCAGTAATAGTGATTTTTGTGCCTAGCTGTGTGAGAGGCTTTCATTTTACTATACGAACTGATTGTATTGGAAATTACAAACAAATCTCCAAATGTCTCCTTTGTTAATAGTTGTATTGAATAAATTTACTAACAAAAACATATTCAAGGCCTAAAGTAAATTTATTCAATAAAATTATAAACAAAAGAGAAAACGTATAGGAAACATGCCAAAGACACATTTGAAGATCAAAATGACTAACAAATTTACTAACAAAATGAATATATTTTAATCAATATCTGTTTAAACCATGACCTGAAACAGGCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTAATGAATCCAGAATAAATTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACGGGAACATAACTTGCAAGTCGGTGACGTGTGTATGTTTGAGATGACTCGACGCAAACCACTTTCATTCACGATTACTATCATCTCAACCACAAAGGAACCAGGCTCGGAAAAGTTTCAAGGTATTGCTTTTATTATTGTTGTTTTTGAAATGATACATATTTTATTATCTTCTGATTTTGATTTTGATACATTTGATCAATGCTAAAAGTTTTAATTTGCCAACAAACTACAATCAATCAAATGTGTAAAATATTTTAAGGTTTAAATCTTGGACATCATGTTGTGTAGTAGAACGAATATTTCACTTGATTGTACAACCCTTCAGCTAGTCCCCCAAGCTCTATTTTATTGCGTTGGTTAAATACATATGTTAATGTTACTGTCATTAGGGCTGAGCAAGAATTTGTCATCCGACCGAAATCCGACGTAACCATAACAAATACTTGTTCAACGGTCGGATGTGTACGGGCTTCGGAAAGAAGTGAGACAAATCAGTTTCACATGGTTTGGAACGGACGAAAGCGGTTCTGTCAAAATGGAATGAGCGGTGTCCGAACCCGTCCACTTATTACTGTTGTTTTTGTCTCTGTAGAAGCCACGCGCGCGTGAAGTGTGAGACTATCTCAAGTCTTGAAAATTCAACAACCTACACACTGTCCAATGTATGTGTGCCATCAAACAGGGTGTGTCTTGACTTTTCAATTGTCATGTTTACCTTTTTTGGCTTTTCATATCTCATGTACTCCATTAAAATAAACTTCTTTCTCTTACCTTAATTAATTTATTACAAGCAAGCAAGAATATGATATTGAGCCCACCACTACCAGAGAGAAGAAACAAGAACAGGGAATGAACACGAAGCACATGAGATGAGAGATATACAGAGAGGAGAAGAACATTTTCGCAGATGAAAGCTAGAGATACAACCGAGCCAAAGCACCCGGCCCACCTGTTATTCCGTTAGACCCGTCACCCGCCGAAACTGACGTTGAAACGGTCGGGAATGGTTCACGTGTTCTGATCTACGGGTGTTCTTCGGTGAGCAGTTGTTGGGCCGAATCCGCCCGTAACCGACCGGTGCTCACCCCTTGCTGTCATAAAACCTCATGATGAAGGATAATGGTGGGTTGTGGGTAGTGTAAATTGTGGTGACCAATAACTGTAAAATAAAATAGAAAAAATGACTGATGTGGACCAATAGATGATAGTGTGTTTAAGGGAGTGTGTAGAGTGTGTGTTCGCGGCATTTCTATAGAGTATTTGATTTTAGTCATTCTAATAATGGCTACATAAAAACTAAGATAAATACTGTACACATATATATTATATGATTAATTCTAAAATATACAAATTTTTCAAGGACTAATACAAAACTATGATCAAAAGTGATATATTTACTAAGATTAATTTTTATATACGGATTAGAAGCTAAAAGTGATATATCTGCCAGGACAAAAAACATATTTAAACTAAGTTGTAATGATCTTATGATTATAATTGATTTGCACATAGCATTAGTAGATTTTCCCCAACTTCTTCAGTAGATCCCTGAGAAGTTTGTGGACATGTGCAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCCGTAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGTACAAAAACACATGGTTTTAGGGGTATTCATCTTAATTTTGTTTTCGTGTTTTTTTGTGTACAATTTATGCAAATCTCCTTAAACTATGTTTTCTTTGTTGTTAATTACTGCAGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTCTTATAACATCATCAGACAAGGTATGAATTACGTAAAATGCTGTTACCATGTATATAGCTATGTGTGTGAATGTATAAAATTTAATTTATTCATATATATGCAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCCGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGTTGGTTCACTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGGCTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGAGACACTTGCTTGTTTTGTCATTTTAAGGGGTGTTACGTAAAATGTAAATATTCTCTAATTACGAGACTCGGTTTATTTTGCAACTGTGTTCTTCCCGTTGGTTTAAATGAAACAAAGGTTCACTAAGATACATCCGACAAGGTTGGAAAATCAGAAAGCAGTCCTAAGGTATGATGCTTCCTCCAATTCTCAAGGTTCATCAAGACATTGCCTTCCTCGATCATCTTTAATCAAAGCTTCTTCAACCACAACATTAACAGTAAGCAACCTAAGATGATTCAGTGCATAAAATTGTTTATTTGCTCAATCTTTCTGCTCTTTTGATTGTTTCATAGCTACTATGA
Protein sequence

>MS.gene052828.t1

MIPRNFVERYWKDVPNPISLKLPNGSVCKMNWVQRSDGIWLQNWKRFASLLRCGDLLVFQYKGGSDFHVIVLDDSQSEIDYSSMRCNDDQENTKESDDDDDDDDNDDYECVEIPNDIENTKIPLKKKRTANSNGIATTTVTPQRTNIDKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSCAIEHPNENPSFTLILSPYHVEGDRRLAIPSWFSKEYMNELLQGKATIRSVGEEDRTWHVTLNFNESRINFRMGSGWKSFSREHNLQVGDVCMFEMTRRKPLSFTITIISTTKEPGSEKFQENQGVQEKSETTPVKDMEYAGNFGDGISRSCTKTHGFRDSVSLNLHEMFKVLITSSDKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKAGDTCLFETIDVQNHVFKKAVLRYDASSNSQGSSRHCLPRSSLIKASSTTTLTLL