AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040687.t1 MTR_1g035570 82.216 388 62 3 26 406 11 398 0.0 627
MS.gene040687.t1 MTR_1g035490 67.812 320 56 7 127 404 16 330 7.38e-130 377
MS.gene040687.t1 MTR_1g035640 43.552 473 154 13 26 403 11 465 6.65e-105 318
MS.gene040687.t1 MTR_1g035620 45.455 407 172 11 29 401 18 408 2.14e-101 307
MS.gene040687.t1 MTR_1g050845 44.595 370 153 12 29 369 18 364 7.74e-80 262
MS.gene040687.t1 MTR_6g061070 32.533 458 211 12 29 402 27 470 5.80e-66 218
MS.gene040687.t1 MTR_1g035650 43.655 197 91 3 29 216 18 203 6.19e-44 152
MS.gene040687.t1 MTR_7g050560 31.317 281 176 6 29 300 22 294 3.37e-33 127
MS.gene040687.t1 MTR_7g050710 30.263 304 164 7 34 304 27 315 3.08e-31 122
MS.gene040687.t1 MTR_5g044670 28.866 291 178 6 29 299 25 306 1.29e-30 120
MS.gene040687.t1 MTR_1g035480 43.333 150 66 4 29 174 26 160 4.71e-30 114
MS.gene040687.t1 MTR_7g050590 30.928 291 167 8 36 300 2 284 1.75e-29 116
MS.gene040687.t1 MTR_8g103940 27.517 298 176 9 29 298 48 333 3.28e-29 119
MS.gene040687.t1 MTR_3g098790 31.579 285 171 7 29 296 22 299 8.69e-29 115
MS.gene040687.t1 MTR_1g108780 28.720 289 171 9 35 297 12 291 1.62e-28 116
MS.gene040687.t1 MTR_7g050720 30.990 313 177 12 20 296 6 315 4.60e-27 110
MS.gene040687.t1 MTR_7g050580 31.317 281 176 6 29 300 22 294 9.74e-27 109
MS.gene040687.t1 MTR_3g061350 27.143 280 183 8 26 294 14 283 1.04e-26 108
MS.gene040687.t1 MTR_3g061310 28.276 290 168 9 26 294 14 284 1.91e-26 107
MS.gene040687.t1 MTR_1g033740 39.041 146 80 3 29 174 31 167 2.40e-26 105
MS.gene040687.t1 MTR_1g035510 31.982 222 124 8 36 239 2 214 4.45e-26 105
MS.gene040687.t1 MTR_3g061340 27.562 283 168 11 26 294 14 273 3.35e-24 101
MS.gene040687.t1 MTR_1g035500 41.985 131 61 3 29 159 34 149 5.47e-24 98.6
MS.gene040687.t1 MTR_3g061320 27.211 294 160 12 26 294 14 278 2.12e-23 99.4
MS.gene040687.t1 MTR_3g061370 26.936 297 162 12 26 294 11 280 4.80e-23 98.2
MS.gene040687.t1 MTR_1g035470 38.525 122 61 2 36 157 2 109 4.29e-22 92.0
MS.gene040687.t1 MTR_4g119990 28.571 287 169 10 26 282 17 297 7.59e-22 96.7
MS.gene040687.t1 MTR_6g043890 26.493 268 181 6 28 280 23 289 8.05e-22 95.9
MS.gene040687.t1 MTR_1g035460 24.671 304 178 7 36 301 2 292 5.50e-21 94.4
MS.gene040687.t1 MTR_1g035520 26.667 300 174 7 36 294 88 382 1.39e-19 90.1
MS.gene040687.t1 MTR_1g035520 40.426 94 52 2 313 402 290 383 1.81e-13 71.6
MS.gene040687.t1 MTR_3g061330 26.275 255 152 9 16 250 1 239 6.55e-19 85.9
MS.gene040687.t1 MTR_3g061290 33.333 126 79 3 26 146 14 139 2.74e-16 77.4
MS.gene040687.t1 MTR_3g005480 22.896 297 184 7 6 296 3 260 2.93e-13 69.7
MS.gene040687.t1 MTR_5g070440 23.551 276 168 9 29 297 30 269 3.32e-13 69.7
MS.gene040687.t1 MTR_3g005420 25.275 273 167 8 29 297 298 537 3.66e-12 68.2
MS.gene040687.t1 MTR_7g050640 41.111 90 49 2 33 118 26 115 1.63e-11 61.6
MS.gene040687.t1 MTR_4g068320 34.884 129 71 4 29 145 15 142 3.05e-11 65.1
MS.gene040687.t1 MTR_3g005495 26.866 134 96 1 29 160 252 385 6.61e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040687.t1 AT3G18990 22.388 335 186 6 29 299 15 339 2.67e-16 80.1
MS.gene040687.t1 AT3G18990 22.590 332 183 6 29 296 15 336 5.38e-16 79.0

Find 77 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACCGTTTGGAAATTTA+AGG 0.151014 1.2:+34101329 None:intergenic
CTTTCGGATTGGGTCGTTTC+CGG 0.165945 1.2:+34100331 None:intergenic
TTTGCAAAGCCTTTCAAATA+TGG 0.200041 1.2:-34101244 MS.gene040687:CDS
CAAGCTCAAAGGACAATAAA+AGG 0.217300 1.2:-34101004 MS.gene040687:CDS
AAATATTGTGGAGTTGAAAA+TGG 0.256652 1.2:-34099833 MS.gene040687:CDS
TGGAGAGAAATGGTGATATT+TGG 0.267670 1.2:-34101288 MS.gene040687:CDS
TATTTCTCCACATATATCTT+AGG 0.281171 1.2:+34101379 None:intergenic
GAAGCATACATTCAAGGTTT+TGG 0.302239 1.2:-34100003 MS.gene040687:CDS
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1.2:+34101337 None:intergenic
TTACACCAATGGCTATTTCT+TGG 0.306445 1.2:-34100671 MS.gene040687:intron
GTGTTTGATGTTTCAATTGT+AGG 0.309600 1.2:-34099664 MS.gene040687:CDS
TTAAAGGGACTGCAACAATA+AGG 0.310666 1.2:-34100532 MS.gene040687:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1.2:-34101217 MS.gene040687:CDS
AGATATATGTGGAGAAATAT+TGG 0.326941 1.2:-34101375 MS.gene040687:CDS
CTAGTAATTTCTTTCGGATT+GGG 0.342779 1.2:+34100321 None:intergenic
TTGGAAATTTAAGGAATATA+GGG 0.346499 1.2:+34101338 None:intergenic
GAGGTGGTTGGAAAATATTC+AGG 0.364157 1.2:-34100442 MS.gene040687:CDS
TAAAACCTAGTAATTTCTTT+CGG 0.364235 1.2:+34100315 None:intergenic
CCTAGTAATTTCTTTCGGAT+TGG 0.373001 1.2:+34100320 None:intergenic
CCAATCCGAAAGAAATTACT+AGG 0.396990 1.2:-34100320 MS.gene040687:intron
TACCGAATTGCCGCTGAGCT+TGG 0.400116 1.2:+34102613 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1.2:+34101162 None:intergenic
TAAAGGGACTGCAACAATAA+GGG 0.414381 1.2:-34100531 MS.gene040687:CDS
TTTGATGAAGCATACATTCA+AGG 0.419004 1.2:-34100009 MS.gene040687:CDS
ACAGCTTCAGATTGTGCCAT+TGG 0.421914 1.2:+34100733 None:intergenic
GAAGTGAGTTTGAGGTATTA+TGG 0.429201 1.2:-34100488 MS.gene040687:CDS
GAGCTTGGCTGAACTGCAAT+CGG 0.449915 1.2:+34102628 None:intergenic
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1.2:-34099832 MS.gene040687:CDS
CAGCTTCAGATTGTGCCATT+GGG 0.460205 1.2:+34100734 None:intergenic
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1.2:-34099727 MS.gene040687:CDS
CAAAGTGGCCATGGTGAAGA+AGG 0.465563 1.2:-34100767 MS.gene040687:CDS
TGTTCTCTTGAAAACTCAAA+TGG 0.468009 1.2:+34100566 None:intergenic
TGTCATTATAACTTCAAAAG+AGG 0.475259 1.2:+34100699 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1.2:-34101214 MS.gene040687:CDS
AGCCAAGCTCAGCGGCAATT+CGG 0.488549 1.2:-34102615 MS.gene040687:intron
GGTGCTAAAGCCACTGAAGA+AGG 0.489506 1.2:-34101115 MS.gene040687:CDS
GGAGTGTGGAAGTGAGTTTG+AGG 0.490380 1.2:-34100496 MS.gene040687:CDS
ATGAGAGTATTCGTGGCTGC+AGG 0.493889 1.2:-34099777 MS.gene040687:CDS
CCAAAGGAGTTTATGAAAAG+AGG 0.496159 1.2:-34099865 MS.gene040687:CDS
GTCATTATAACTTCAAAAGA+GGG 0.507540 1.2:+34100700 None:intergenic
CGTGGCTGCAGGTTCAGTAA+AGG 0.507598 1.2:-34099766 MS.gene040687:CDS
CAATAAGGGTTGGTAAAGAA+AGG 0.509993 1.2:-34100517 MS.gene040687:CDS
AATTATTATGAGAGTATTCG+TGG 0.512630 1.2:-34099784 MS.gene040687:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1.2:+34101105 None:intergenic
AAGAGATATCCATATTTGAA+AGG 0.520085 1.2:+34101235 None:intergenic
ATTGTCACTATTACTCGTGC+CGG 0.525079 1.2:-34100350 MS.gene040687:CDS
AAGCTCAAAGGACAATAAAA+GGG 0.530769 1.2:-34101003 MS.gene040687:CDS
AGGATGTCATGAAAATATTG+TGG 0.531604 1.2:-34099845 MS.gene040687:CDS
ATAGTGACAATGAATGAAAA+CGG 0.533216 1.2:+34100362 None:intergenic
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1.2:-34101334 MS.gene040687:CDS
GATCTTGTATGGGAGGTGGT+TGG 0.551716 1.2:-34100454 MS.gene040687:CDS
AAAGTATAATTTGCAAGTTG+AGG 0.553539 1.2:-34100417 MS.gene040687:CDS
AAAGGGAAGAGAAAATTCTC+AGG 0.557828 1.2:-34100986 MS.gene040687:intron
TGAAAATGGGGAGGAAGTCA+TGG 0.563749 1.2:-34099819 MS.gene040687:CDS
AAAAGATCTTGTATGGGAGG+TGG 0.568049 1.2:-34100458 MS.gene040687:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1.2:-34099985 MS.gene040687:intron
AACGACACTGCCATGTCTGT+TGG 0.574077 1.2:+34102654 None:intergenic
GCTGCAGGTTCAGTAAAGGT+TGG 0.575963 1.2:-34099762 MS.gene040687:CDS
AGGTAGTAACAAAGTGGCCA+TGG 0.582904 1.2:-34100776 MS.gene040687:CDS
GAGGGTTCCTAAGATATATG+TGG 0.586451 1.2:-34101386 MS.gene040687:CDS
ACTTACCAAGAAATAGCCAT+TGG 0.587587 1.2:+34100666 None:intergenic
GTAAATTTGAGATGATTCAA+CGG 0.588165 1.2:-34100388 MS.gene040687:CDS
GGGACTGCAACAATAAGGGT+TGG 0.589089 1.2:-34100527 MS.gene040687:CDS
GTATTTGCAGAGTGCACCAA+AGG 0.590998 1.2:-34099881 MS.gene040687:intron
GGTTGGTAAAGAAAGGAGTG+TGG 0.602290 1.2:-34100510 MS.gene040687:CDS
AGGTGGTTGGAAAATATTCA+GGG 0.606836 1.2:-34100441 MS.gene040687:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1.2:-34100682 MS.gene040687:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1.2:-34101370 MS.gene040687:CDS
AAATGTCAAAGCAAGCTCAA+AGG 0.625671 1.2:-34101015 MS.gene040687:CDS
AAGTGATGAAGAGAGTGATG+AGG 0.629681 1.2:-34101041 MS.gene040687:CDS
TTGTGGAGTTGAAAATGGGG+AGG 0.632079 1.2:-34099828 MS.gene040687:CDS
CTTTACAGGTAGTAACAAAG+TGG 0.648804 1.2:-34100782 MS.gene040687:intron
TCATCTTCATCCAACAGACA+TGG 0.668320 1.2:-34102664 MS.gene040687:CDS
TGCAGTTCAGCCAAGCTCAG+CGG 0.670925 1.2:-34102623 MS.gene040687:CDS
GAAGGCTAGAAAATACCCAA+TGG 0.687317 1.2:-34100749 MS.gene040687:CDS
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1.2:-34099831 MS.gene040687:CDS
ATTCATGAAAGAATGCAATG+TGG 0.699756 1.2:-34099734 MS.gene040687:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACATATAATATATAGTT+AGG + chr1.2:34102168-34102187 None:intergenic 10.0%
!!! ATAAAAATATGTGATTTTTT+TGG - chr1.2:34101437-34101456 MS.gene040687:intron 10.0%
!!! TGTATGTTATAATTTTTTTA+TGG - chr1.2:34102058-34102077 MS.gene040687:intron 10.0%
!!! TTTTCTATATATATATATGT+TGG + chr1.2:34100090-34100109 None:intergenic 10.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + chr1.2:34101162-34101181 None:intergenic 15.0%
!!! ATTTTCTATCTAATATTTTC+TGG + chr1.2:34100521-34100540 None:intergenic 15.0%
!!! CAAATAACTCTAAAATTTTT+GGG - chr1.2:34102223-34102242 MS.gene040687:intron 15.0%
!!! TATTTTAAGGTTAAGATATA+TGG - chr1.2:34101134-34101153 MS.gene040687:CDS 15.0%
!!! TCAAATAACTCTAAAATTTT+TGG - chr1.2:34102222-34102241 MS.gene040687:intron 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - chr1.2:34101010-34101029 MS.gene040687:CDS 15.0%
!!! TTATAATTTTTTTATGGACA+AGG - chr1.2:34102064-34102083 MS.gene040687:intron 15.0%
!! AAATAATCTCTAAACTTTAC+AGG - chr1.2:34101525-34101544 MS.gene040687:intron 20.0%
!! AACAAAAAAAGATCTTGTAT+GGG - chr1.2:34101857-34101876 MS.gene040687:intron 20.0%
!! AATTCAAAAACTGAAAGAAT+AGG - chr1.2:34099898-34099917 MS.gene040687:intron 20.0%
!! ATATAAAAATGGCAGATTAA+GGG - chr1.2:34100330-34100349 MS.gene040687:CDS 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - chr1.2:34100987-34101006 MS.gene040687:CDS 20.0%
!! TAAAACCTAGTAATTTCTTT+CGG + chr1.2:34102009-34102028 None:intergenic 20.0%
!! TAACAAAAAAAGATCTTGTA+TGG - chr1.2:34101856-34101875 MS.gene040687:intron 20.0%
!! TATATAAAAATGGCAGATTA+AGG - chr1.2:34100329-34100348 MS.gene040687:CDS 20.0%
!! TGTATTGTAATTCTTCAATT+TGG - chr1.2:34099765-34099784 MS.gene040687:CDS 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + chr1.2:34100986-34101005 None:intergenic 20.0%
!! TTGGTTATATTAGATTTACA+AGG + chr1.2:34100416-34100435 None:intergenic 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + chr1.2:34100987-34101006 None:intergenic 20.0%
!!! AAATATGTGATTTTTTTGGA+AGG - chr1.2:34101441-34101460 MS.gene040687:intron 20.0%
!!! AACACTTGAAAGATTTTAAA+GGG - chr1.2:34101774-34101793 MS.gene040687:intron 20.0%
!!! AATATCAAATCAGTTTTTGA+AGG - chr1.2:34101185-34101204 MS.gene040687:CDS 20.0%
!!! ATATTTGCAATTTGTGATTT+TGG - chr1.2:34100134-34100153 MS.gene040687:intron 20.0%
!!! ATATTTGGTTTCAAAAAAAC+TGG - chr1.2:34101048-34101067 MS.gene040687:CDS 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - chr1.2:34101009-34101028 MS.gene040687:CDS 20.0%
!!! TAAAGACATTTTTTGTAGTA+TGG + chr1.2:34100600-34100619 None:intergenic 20.0%
!!! TAATCTGCCATTTTTATATA+AGG + chr1.2:34100329-34100348 None:intergenic 20.0%
!!! TATTTGGTTTCAAAAAAACT+GGG - chr1.2:34101049-34101068 MS.gene040687:CDS 20.0%
!!! TTCAAAAACTGATTTGATAT+TGG + chr1.2:34101186-34101205 None:intergenic 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + chr1.2:34102358-34102377 None:intergenic 20.0%
! AAATATTGTGGAGTTGAAAA+TGG - chr1.2:34102488-34102507 MS.gene040687:intron 25.0%
! AAGAGATATCCATATTTGAA+AGG + chr1.2:34101089-34101108 None:intergenic 25.0%
! AAGATTATCCTATGAAAATC+TGG + chr1.2:34100781-34100800 None:intergenic 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - chr1.2:34102489-34102508 MS.gene040687:intron 25.0%
! AGATATATGTGGAGAAATAT+TGG - chr1.2:34100946-34100965 MS.gene040687:intron 25.0%
! ATAGTGACAATGAATGAAAA+CGG + chr1.2:34101962-34101981 None:intergenic 25.0%
! ATATCTACTAAACCATGATT+TGG - chr1.2:34101721-34101740 MS.gene040687:intron 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - chr1.2:34101104-34101123 MS.gene040687:CDS 25.0%
! GTCATTATAACTTCAAAAGA+GGG + chr1.2:34101624-34101643 None:intergenic 25.0%
! GTTCAATGGATATTATAGTT+AGG - chr1.2:34099920-34099939 MS.gene040687:intron 25.0%
! TAAAAAAAGAAACTGAATCC+TGG + chr1.2:34102137-34102156 None:intergenic 25.0%
! TATTTCTCCACATATATCTT+AGG + chr1.2:34100945-34100964 None:intergenic 25.0%
! TGTCATTATAACTTCAAAAG+AGG + chr1.2:34101625-34101644 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - chr1.2:34101107-34101126 MS.gene040687:CDS 25.0%
! TTGTGATGATATACACAAAT+AGG - chr1.2:34100225-34100244 MS.gene040687:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + chr1.2:34102357-34102376 None:intergenic 25.0%
!! AAAGTATAATTTGCAAGTTG+AGG - chr1.2:34101904-34101923 MS.gene040687:intron 25.0%
!! GAACACTTGAAAGATTTTAA+AGG - chr1.2:34101773-34101792 MS.gene040687:intron 25.0%
!! GTAAATTTGAGATGATTCAA+CGG - chr1.2:34101933-34101952 MS.gene040687:intron 25.0%
!!! AATTATTATGAGAGTATTCG+TGG - chr1.2:34102537-34102556 MS.gene040687:intron 25.0%
!!! ACTGTTTTTGAACTGATTTT+TGG - chr1.2:34099798-34099817 MS.gene040687:CDS 25.0%
!!! CTGTTTTTGAACTGATTTTT+GGG - chr1.2:34099799-34099818 MS.gene040687:CDS 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - chr1.2:34101013-34101032 MS.gene040687:CDS 25.0%
AAAAAAAGATCTTGTATGGG+AGG - chr1.2:34101860-34101879 MS.gene040687:intron 30.0%
AACTGAAAGAATAGGTTCAA+TGG - chr1.2:34099906-34099925 MS.gene040687:intron 30.0%
AAGCTCAAAGGACAATAAAA+GGG - chr1.2:34101318-34101337 MS.gene040687:CDS 30.0%
AGGATGTCATGAAAATATTG+TGG - chr1.2:34102476-34102495 MS.gene040687:intron 30.0%
AGTTGTGATGATTCACAAAT+AGG - chr1.2:34100053-34100072 MS.gene040687:intron 30.0%
AGTTTAGGCTTGTAAATCTA+AGG - chr1.2:34101360-34101379 MS.gene040687:CDS 30.0%
ATATTGTGGAGTTGAAAATG+GGG - chr1.2:34102490-34102509 MS.gene040687:intron 30.0%
ATGGACAAGGTTATAAGAAA+GGG - chr1.2:34102077-34102096 MS.gene040687:intron 30.0%
ATTCATGAAAGAATGCAATG+TGG - chr1.2:34102587-34102606 MS.gene040687:intron 30.0%
CTAGTAATTTCTTTCGGATT+GGG + chr1.2:34102003-34102022 None:intergenic 30.0%
CTGAATTTCTTTATTGCAGA+GGG - chr1.2:34100917-34100936 MS.gene040687:intron 30.0%
GACAGCACCTTATATAAAAA+TGG - chr1.2:34100319-34100338 MS.gene040687:intron 30.0%
GTGTTTGATGTTTCAATTGT+AGG - chr1.2:34102657-34102676 MS.gene040687:CDS 30.0%
TAGTACAATTCAGTGAAAGT+TGG + chr1.2:34100435-34100454 None:intergenic 30.0%
TATGGACAAGGTTATAAGAA+AGG - chr1.2:34102076-34102095 MS.gene040687:intron 30.0%
TATGTGGAGAAATATTGGAA+AGG - chr1.2:34100951-34100970 MS.gene040687:intron 30.0%
TCTGAATTTCTTTATTGCAG+AGG - chr1.2:34100916-34100935 MS.gene040687:intron 30.0%
TGTTCTCTTGAAAACTCAAA+TGG + chr1.2:34101758-34101777 None:intergenic 30.0%
TTATGTAATTAATCCTACCG+GGG + chr1.2:34102356-34102375 None:intergenic 30.0%
TTTGATGAAGCATACATTCA+AGG - chr1.2:34102312-34102331 MS.gene040687:intron 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - chr1.2:34101077-34101096 MS.gene040687:CDS 30.0%
! AACATGTTCCAGATTTTCAT+AGG - chr1.2:34100770-34100789 MS.gene040687:CDS 30.0%
! ACTTTCTTCATCTTCTTTTG+TGG + chr1.2:34101264-34101283 None:intergenic 30.0%
! CTTTCTTCATCTTCTTTTGT+GGG + chr1.2:34101263-34101282 None:intergenic 30.0%
! TGATAGTGTTTCTCTATTGA+TGG - chr1.2:34099841-34099860 MS.gene040687:CDS 30.0%
!! CATTGGTGGATCATATTTTA+AGG - chr1.2:34101121-34101140 MS.gene040687:CDS 30.0%
!! TTCTAGCTTACATTGTAAGA+TGG - chr1.2:34100292-34100311 MS.gene040687:intron 30.0%
!!! ATTTTCTGGTGTTACTACTT+TGG + chr1.2:34100507-34100526 None:intergenic 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + chr1.2:34101005-34101024 None:intergenic 30.0%
!!! CTTTTAATTTGCCACAAAAG+TGG + chr1.2:34100262-34100281 None:intergenic 30.0%
!!! GACATTTTTTGTAGTATGGT+AGG + chr1.2:34100596-34100615 None:intergenic 30.0%
!!! TTTTTATATAAGGTGCTGTC+TGG + chr1.2:34100319-34100338 None:intergenic 30.0%
AAAGAATGCAATGTGGAGAT+TGG - chr1.2:34102594-34102613 MS.gene040687:intron 35.0%
AAAGGGAAGAGAAAATTCTC+AGG - chr1.2:34101335-34101354 MS.gene040687:CDS 35.0%
AAATGTCAAAGCAAGCTCAA+AGG - chr1.2:34101306-34101325 MS.gene040687:CDS 35.0%
AACTGAATCCTGGATAACTT+AGG + chr1.2:34102127-34102146 None:intergenic 35.0%
AATGGACAGTAATGAAGTCT+TGG - chr1.2:34100567-34100586 MS.gene040687:CDS 35.0%
ACTTACCAAGAAATAGCCAT+TGG + chr1.2:34101658-34101677 None:intergenic 35.0%
ACTTCATTACTGTCCATTAC+AGG + chr1.2:34100565-34100584 None:intergenic 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + chr1.2:34101219-34101238 None:intergenic 35.0%
AGGTGGTTGGAAAATATTCA+GGG - chr1.2:34101880-34101899 MS.gene040687:intron 35.0%
ATGACACAATCTTACACCAA+TGG - chr1.2:34101639-34101658 MS.gene040687:intron 35.0%
CAACACCGTTTGGAAATTTA+AGG + chr1.2:34100995-34101014 None:intergenic 35.0%
CAAGCTCAAAGGACAATAAA+AGG - chr1.2:34101317-34101336 MS.gene040687:CDS 35.0%
CCAAAGGAGTTTATGAAAAG+AGG - chr1.2:34102456-34102475 MS.gene040687:intron 35.0%
CCAATCCGAAAGAAATTACT+AGG - chr1.2:34102001-34102020 MS.gene040687:intron 35.0%
CCTAGTAATTTCTTTCGGAT+TGG + chr1.2:34102004-34102023 None:intergenic 35.0%
CTTTACAGGTAGTAACAAAG+TGG - chr1.2:34101539-34101558 MS.gene040687:intron 35.0%
GAAAATTCTCAGGTGAGTTT+AGG - chr1.2:34101345-34101364 MS.gene040687:CDS 35.0%
GCATACACTCAAAAACACAT+TGG + chr1.2:34100390-34100409 None:intergenic 35.0%
TAAAGGGACTGCAACAATAA+GGG - chr1.2:34101790-34101809 MS.gene040687:intron 35.0%
TCTCTACAAATGACCTGTAA+TGG - chr1.2:34100549-34100568 MS.gene040687:CDS 35.0%
TGGACAAGGTTATAAGAAAG+GGG - chr1.2:34102078-34102097 MS.gene040687:intron 35.0%
TGGAGAGAAATGGTGATATT+TGG - chr1.2:34101033-34101052 MS.gene040687:CDS 35.0%
TTAAAGGGACTGCAACAATA+AGG - chr1.2:34101789-34101808 MS.gene040687:intron 35.0%
TTATGCCTGTATTGTACAGA+AGG - chr1.2:34102283-34102302 MS.gene040687:intron 35.0%
TTTCACACTTTACACTTCAC+AGG - chr1.2:34100631-34100650 MS.gene040687:intron 35.0%
! CCTCTTTTCATAAACTCCTT+TGG + chr1.2:34102459-34102478 None:intergenic 35.0%
! GAAGCATACATTCAAGGTTT+TGG - chr1.2:34102318-34102337 MS.gene040687:intron 35.0%
! GAAGTGAGTTTGAGGTATTA+TGG - chr1.2:34101833-34101852 MS.gene040687:intron 35.0%
! TAAACCATGATTTGGAACAG+TGG - chr1.2:34101729-34101748 MS.gene040687:intron 35.0%
!! ACAAAGCAAATCCACTTTTG+TGG - chr1.2:34100248-34100267 MS.gene040687:intron 35.0%
!! ATATTTTGGGTGGAGAGAAA+TGG - chr1.2:34101023-34101042 MS.gene040687:CDS 35.0%
!! CAATAAGGGTTGGTAAAGAA+AGG - chr1.2:34101804-34101823 MS.gene040687:intron 35.0%
!! TTACACCAATGGCTATTTCT+TGG - chr1.2:34101650-34101669 MS.gene040687:intron 35.0%
AAAAGATCTTGTATGGGAGG+TGG - chr1.2:34101863-34101882 MS.gene040687:intron 40.0%
AAGTGATGAAGAGAGTGATG+AGG - chr1.2:34101280-34101299 MS.gene040687:CDS 40.0%
ATGGCAGATTAAGGGATCAA+AGG - chr1.2:34100338-34100357 MS.gene040687:CDS 40.0%
ATTGTCACTATTACTCGTGC+CGG - chr1.2:34101971-34101990 MS.gene040687:intron 40.0%
GAAGGCTAGAAAATACCCAA+TGG - chr1.2:34101572-34101591 MS.gene040687:intron 40.0%
GAGGGTTCCTAAGATATATG+TGG - chr1.2:34100935-34100954 MS.gene040687:intron 40.0%
GAGGTGGTTGGAAAATATTC+AGG - chr1.2:34101879-34101898 MS.gene040687:intron 40.0%
GATGCTAGTGAGTGAGTATT+GGG + chr1.2:34100732-34100751 None:intergenic 40.0%
GTAACCACTGTTCCAAATCA+TGG + chr1.2:34101736-34101755 None:intergenic 40.0%
GTTAGTAGCCTAAGTTATCC+AGG - chr1.2:34102116-34102135 MS.gene040687:intron 40.0%
TCATCTTCATCCAACAGACA+TGG - chr1.2:34099657-34099676 MS.gene040687:CDS 40.0%
TGATGCTAGTGAGTGAGTAT+TGG + chr1.2:34100733-34100752 None:intergenic 40.0%
TGGCAGATTAAGGGATCAAA+GGG - chr1.2:34100339-34100358 MS.gene040687:CDS 40.0%
!! CTTTGGTGTTGGATTGAACT+TGG + chr1.2:34100490-34100509 None:intergenic 40.0%
!! GTTCAGTCTGTTTTTCTCTC+AGG + chr1.2:34100673-34100692 None:intergenic 40.0%
!! TGGTGTTACTACTTTGGTGT+TGG + chr1.2:34100501-34100520 None:intergenic 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + chr1.2:34101565-34101584 None:intergenic 40.0%
ACAGCTTCAGATTGTGCCAT+TGG + chr1.2:34101591-34101610 None:intergenic 45.0%
AGGTAGTAACAAAGTGGCCA+TGG - chr1.2:34101545-34101564 MS.gene040687:intron 45.0%
CACGACCTTCTGTACAATAC+AGG + chr1.2:34102291-34102310 None:intergenic 45.0%
GGATCAAAGGGAAAGACACA+CGG - chr1.2:34100351-34100370 MS.gene040687:CDS 45.0%
GTATTTGCAGAGTGCACCAA+AGG - chr1.2:34102440-34102459 MS.gene040687:intron 45.0%
TGAAAATGGGGAGGAAGTCA+TGG - chr1.2:34102502-34102521 MS.gene040687:intron 45.0%
TTGTGGAGTTGAAAATGGGG+AGG - chr1.2:34102493-34102512 MS.gene040687:intron 45.0%
! CAGCTTCAGATTGTGCCATT+GGG + chr1.2:34101590-34101609 None:intergenic 45.0%
!! AGTGAGTGAGTATTGGGCTA+AGG + chr1.2:34100726-34100745 None:intergenic 45.0%
!! GGTTGGTAAAGAAAGGAGTG+TGG - chr1.2:34101811-34101830 MS.gene040687:intron 45.0%
!! AATATATGATAAAAAAAAAT+TGG - chr1.2:34101483-34101502 MS.gene040687:intron 5.0%
AACGACACTGCCATGTCTGT+TGG + chr1.2:34099670-34099689 None:intergenic 50.0%
CAAAGTGGCCATGGTGAAGA+AGG - chr1.2:34101554-34101573 MS.gene040687:intron 50.0%
GAGCTTGGCTGAACTGCAAT+CGG + chr1.2:34099696-34099715 None:intergenic 50.0%
GATCTTGTATGGGAGGTGGT+TGG - chr1.2:34101867-34101886 MS.gene040687:intron 50.0%
GCTGCAGGTTCAGTAAAGGT+TGG - chr1.2:34102559-34102578 MS.gene040687:intron 50.0%
GGAGTGTGGAAGTGAGTTTG+AGG - chr1.2:34101825-34101844 MS.gene040687:intron 50.0%
GGCTAAGGCTTAGAGAAGTG+AGG + chr1.2:34100711-34100730 None:intergenic 50.0%
GGGACTGCAACAATAAGGGT+TGG - chr1.2:34101794-34101813 MS.gene040687:intron 50.0%
GGTGCTAAAGCCACTGAAGA+AGG - chr1.2:34101206-34101225 MS.gene040687:CDS 50.0%
TTTGGTGAAGAACACAGCCC+CGG - chr1.2:34102336-34102355 MS.gene040687:intron 50.0%
! CTTTCGGATTGGGTCGTTTC+CGG + chr1.2:34101993-34102012 None:intergenic 50.0%
!! ATGAGAGTATTCGTGGCTGC+AGG - chr1.2:34102544-34102563 MS.gene040687:intron 50.0%
AGCCAAGCTCAGCGGCAATT+CGG - chr1.2:34099706-34099725 MS.gene040687:CDS 55.0%
AGCTCAGCGGCAATTCGGTA+AGG - chr1.2:34099711-34099730 MS.gene040687:CDS 55.0%
CGTGGCTGCAGGTTCAGTAA+AGG - chr1.2:34102555-34102574 MS.gene040687:intron 55.0%
TACCGAATTGCCGCTGAGCT+TGG + chr1.2:34099711-34099730 None:intergenic 55.0%
TGCAGTTCAGCCAAGCTCAG+CGG - chr1.2:34099698-34099717 MS.gene040687:CDS 55.0%
GTGAAGAACACAGCCCCGGT+AGG - chr1.2:34102340-34102359 MS.gene040687:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34099651 34102692 34099651 ID=MS.gene040687
chr1.2 mRNA 34099651 34102692 34099651 ID=MS.gene040687.t1;Parent=MS.gene040687
chr1.2 exon 34102616 34102692 34102616 ID=MS.gene040687.t1.exon1;Parent=MS.gene040687.t1
chr1.2 CDS 34102616 34102692 34102616 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34101527 34101551 34101527 ID=MS.gene040687.t1.exon2;Parent=MS.gene040687.t1
chr1.2 CDS 34101527 34101551 34101527 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34100987 34101407 34100987 ID=MS.gene040687.t1.exon3;Parent=MS.gene040687.t1
chr1.2 CDS 34100987 34101407 34100987 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34100672 34100796 34100672 ID=MS.gene040687.t1.exon4;Parent=MS.gene040687.t1
chr1.2 CDS 34100672 34100796 34100672 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34100321 34100594 34100321 ID=MS.gene040687.t1.exon5;Parent=MS.gene040687.t1
chr1.2 CDS 34100321 34100594 34100321 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34099986 34100041 34099986 ID=MS.gene040687.t1.exon6;Parent=MS.gene040687.t1
chr1.2 CDS 34099986 34100041 34099986 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
chr1.2 exon 34099651 34099893 34099651 ID=MS.gene040687.t1.exon7;Parent=MS.gene040687.t1
chr1.2 CDS 34099651 34099893 34099651 ID=cds.MS.gene040687.t1;Parent=MS.gene040687.t1
Gene Sequence

>MS.gene040687

ATGTCTTCATCTTCATCCAACAGACATGGCAGTGTCGTTGCTCCGATTGCAGTTCAGCCAAGCTCAGCGGCAATTCGGTAAGGAAACGCTGATTTATGTATGAATATTGAGTATTGTATTGTAATTCTTCAATTTGGTTTCTGTGATACTGTTTTTGAACTGATTTTTGGGTTAATTGAGCAATTTTCTGTGATAGTGTTTCTCTATTGATGGATATTAGAATCTATTTGATTGAGATTAATAAACAAATTCAAAAACTGAAAGAATAGGTTCAATGGATATTATAGTTAGGAGTTTCTAGTTTGTCGATGAAATGTTCTTAGCATTGCATATGCAATGTTGATAGATTGATTCTGTGTGTTCTGCATGTGAAATAGACACTTAACAAAGTATGACAGATGCAGTTGTGATGATTCACAAATAGGACAAAGCAAATCCAACATATATATATATAGAAAAAGAATATAGACATTAAAAATGTTTATATTTGCAATTTGTGATTTTGGAATATCTAAAAAAAAAATAGTGAGATTGTTTATGTGTGATTGTGTGTTCTGTTCAATGACAGATGCAATTGTGATGATATACACAAATAGGACAAAGCAAATCCACTTTTGTGGCAAATTAAAAGTTGTTTCTATTTCTAGCTTACATTGTAAGATGGACCAGACAGCACCTTATATAAAAATGGCAGATTAAGGGATCAAAGGGAAAGACACACGGTCTTGTAATCTAACCAATGTGTTTTTGAGTGTATGCATGCCTTGTAAATCTAATATAACCAACTTTCACTGAATTGTACTAACTGTTAAAACACTTTTACTGTGTCATAAATGCCAAGTTCAATCCAACACCAAAGTAGTAACACCAGAAAATATTAGATAGAAAATGCATCATTTCTCTACAAATGACCTGTAATGGACAGTAATGAAGTCTTGGTTTCCTACCATACTACAAAAAATGTCTTTAACTTTATAACATTTCACACTTTACACTTCACAGGATTTATAACATTGAGACCTGAGAGAAAAACAGACTGAACACTCAAACTCTTTCACCTCACTTCTCTAAGCCTTAGCCCAATACTCACTCACTAGCATCAGTTAACAATGTCATTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATATTAGAAAGAATTATTTTGCATATTTACATTATGTTTCATTTATAATGTATTATTTATGTATCATTGTTTTAAAAATGTTAATGTCTGATTTCTGAATTTCTTTATTGCAGAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAAAACTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATATGGTGCCAATACTTTAGAAATAAACTATTCCAATATCAAATCAGTTTTTGAAGGTGCTAAAGCCACTGAAGAAGGTAAAGAAAGTGATGAATCAAGTGATGATGAACCCACAAAAGAAGATGAAGAAAGTGATGAAGAGAGTGATGAGGTTGAAATGTCAAAGCAAGCTCAAAGGACAATAAAAGGGAAGAGAAAATTCTCAGGTGAGTTTAGGCTTGTAAATCTAAGGAAAAAAAGTGTCTTGAAGTGCATAATTGAGAAGCATTGTTAGATACTTTTTTCTATAAAAATATGTGATTTTTTTGGAAGGAAAAATATGTGATTTTTATAATATATGATAAAAAAAAATTGGTTTAATTAAAATCGTTTAAAAATAATCTCTAAACTTTACAGGTAGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATACCCAATGGCACAATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATGAATTTAAACTTTAATTAATAATATATCTACTAAACCATGATTTGGAACAGTGGTTACCATTTGAGTTTTCAAGAGAACACTTGAAAGATTTTAAAGGGACTGCAACAATAAGGGTTGGTAAAGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGGTAACAAAAAAAGATCTTGTATGGGAGGTGGTTGGAAAATATTCAGGGAAAAGTATAATTTGCAAGTTGAGGATGTTTGTAAATTTGAGATGATTCAACGGAGACCGTTTTCATTCATTGTCACTATTACTCGTGCCGGAAACGACCCAATCCGAAAGAAATTACTAGGTTTTAATTCTTTCTTTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATGGACAAGGTTATAAGAAAGGGGTCTCTTTTTTTAGTAGTTAGTAGCCTAAGTTATCCAGGATTCAGTTTCTTTTTTTAGTTTAAAACCTAACTATATATTATATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAATATATTCAAATAACTCTAAAATTTTTGGGTATTATAAAAATTAGATTAGATGATATCATTTTGTGTTTATGCCTGTATTGTACAGAAGGTCGTGATTTGATGAAGCATACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTACATAAAATATAGTTACATATGTAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTTATTGTATTTGCAGAGTGCACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGGAAGTCATGGTTCGTAAAAGTGAATTATTATGAGAGTATTCGTGGCTGCAGGTTCAGTAAAGGTTGGATAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGCAAGTTTGTGTTTGATGTTTCAATTGTAGGAAAGAACCCATGA
Protein sequence

>MS.gene040687.t1

MSSSSSNRHGSVVAPIAVQPSSAAIRIILQDKKLRVPKIYVEKYWKGISNPIFLKFPNGVEQKIFWVERNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIYGANTLEINYSNIKSVFEGAKATEEGKESDESSDDEPTKEDEESDEESDEVEMSKQAQRTIKGKRKFSGSNKVAMVKKARKYPMAQSEAVNENPSFEVIMTQSYTNGYFLWLPFEFSREHLKDFKGTATIRVGKERSVEVSLRYYGNKKRSCMGGGWKIFREKYNLQVEDVCKFEMIQRRPFSFIVTITRAGNDPIRKKLLEGRDLMKHTFKVLVKNTAPSAPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFSKGWIKFMKECNVEIGDTCLFKLIDESKFVFDVSIVGKNP