Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88945.t1 | PNY14915.1 | 85.9 | 306 | 34 | 3 | 4 | 304 | 3 | 304 | 4.80E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88945.t1 | Q9SGS4 | 64.8 | 304 | 91 | 5 | 10 | 304 | 6 | 302 | 2.1e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88945.t1 | A0A2K3PI43 | 85.9 | 306 | 34 | 3 | 4 | 304 | 3 | 304 | 3.5e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene88945 | 0.814672 | 1.37E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene88945 | 0.853319 | 2.58E-61 | -1.69E-46 |
| MS.gene049369 | MS.gene88945 | 0.837645 | 4.60E-57 | -1.69E-46 |
| MS.gene049488 | MS.gene88945 | 0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene88945 | 0.848441 | 6.12E-60 | -1.69E-46 |
| MS.gene049805 | MS.gene88945 | 0.826018 | 3.42E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene88945 | 0.808649 | 2.79E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene88945 | 0.837363 | 5.43E-57 | -1.69E-46 |
| MS.gene050426 | MS.gene88945 | -0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene88945 | 0.84755 | 1.08E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene88945 | 0.87818 | 3.46E-69 | -1.69E-46 |
| MS.gene050747 | MS.gene88945 | 0.807673 | 4.51E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene88945 | 0.828285 | 9.79E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene88945 | 0.827662 | 1.38E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene88945 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene88945 | 0.884005 | 2.77E-71 | -1.69E-46 |
| MS.gene051360 | MS.gene88945 | 0.817354 | 3.45E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene88945 | 0.848591 | 5.56E-60 | -1.69E-46 |
| MS.gene051525 | MS.gene88945 | 0.884829 | 1.37E-71 | -1.69E-46 |
| MS.gene051605 | MS.gene88945 | 0.80357 | 3.27E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene88945 | 0.809156 | 2.17E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene88945 | 0.821725 | 3.47E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene88945 | 0.83315 | 6.29E-56 | -1.69E-46 |
| MS.gene051941 | MS.gene88945 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene88945 | -0.833555 | 4.99E-56 | -1.69E-46 |
| MS.gene052136 | MS.gene88945 | 0.810383 | 1.18E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene88945 | 0.831639 | 1.49E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene88945 | 0.833588 | 4.89E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene88945 | 0.828791 | 7.39E-55 | -1.69E-46 |
| MS.gene052318 | MS.gene88945 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene88945 | 0.837904 | 3.95E-57 | -1.69E-46 |
| MS.gene052346 | MS.gene88945 | 0.855085 | 7.99E-62 | -1.69E-46 |
| MS.gene052414 | MS.gene88945 | 0.871342 | 7.35E-67 | -1.69E-46 |
| MS.gene052421 | MS.gene88945 | 0.860713 | 1.71E-63 | -1.69E-46 |
| MS.gene052481 | MS.gene88945 | 0.825522 | 4.48E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene88945 | 0.843432 | 1.41E-58 | -1.69E-46 |
| MS.gene052501 | MS.gene88945 | 0.867621 | 1.20E-65 | -1.69E-46 |
| MS.gene052503 | MS.gene88945 | 0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene88945 | 0.854598 | 1.11E-61 | -1.69E-46 |
| MS.gene052615 | MS.gene88945 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene88945 | 0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene88945 | 0.817628 | 2.99E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene88945 | 0.847031 | 1.50E-59 | -1.69E-46 |
| MS.gene052999 | MS.gene88945 | 0.801645 | 8.17E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene88945 | 0.810651 | 1.04E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene88945 | 0.814779 | 1.30E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene88945 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene88945 | 0.808854 | 2.52E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene88945 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene88945 | 0.851276 | 9.86E-61 | -1.69E-46 |
| MS.gene053480 | MS.gene88945 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene88945 | 0.804867 | 1.76E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene88945 | 0.814665 | 1.37E-51 | -1.69E-46 |
| MS.gene053873 | MS.gene88945 | 0.841225 | 5.41E-58 | -1.69E-46 |
| MS.gene053912 | MS.gene88945 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene88945 | 0.828799 | 7.35E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene88945 | 0.820885 | 5.42E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene88945 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene88945 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene88945 | 0.836335 | 9.94E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene88945 | 0.864725 | 9.89E-65 | -1.69E-46 |
| MS.gene055206 | MS.gene88945 | 0.810965 | 8.87E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene88945 | 0.811162 | 8.04E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene88945 | 0.809307 | 2.02E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene88945 | 0.860183 | 2.47E-63 | -1.69E-46 |
| MS.gene05553 | MS.gene88945 | 0.832808 | 7.65E-56 | -1.69E-46 |
| MS.gene05556 | MS.gene88945 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene88945 | 0.814256 | 1.69E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene88945 | 0.88654 | 3.13E-72 | -1.69E-46 |
| MS.gene055744 | MS.gene88945 | 0.89104 | 5.71E-74 | -1.69E-46 |
| MS.gene055909 | MS.gene88945 | 0.83895 | 2.12E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene88945 | 0.845777 | 3.29E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene88945 | 0.827195 | 1.79E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene88945 | 0.835886 | 1.29E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene88945 | 0.838011 | 3.71E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene88945 | 0.806745 | 7.09E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene88945 | 0.849973 | 2.29E-60 | -1.69E-46 |
| MS.gene056514 | MS.gene88945 | 0.842637 | 2.29E-58 | -1.69E-46 |
| MS.gene05664 | MS.gene88945 | 0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene88945 | 0.805222 | 1.48E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene88945 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene056796 | MS.gene88945 | 0.803184 | 3.93E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene88945 | 0.84951 | 3.09E-60 | -1.69E-46 |
| MS.gene057019 | MS.gene88945 | 0.829749 | 4.32E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene88945 | 0.803575 | 3.27E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene88945 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene88945 | 0.843709 | 1.19E-58 | -1.69E-46 |
| MS.gene057124 | MS.gene88945 | 0.82471 | 6.96E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene88945 | 0.805867 | 1.08E-49 | -1.69E-46 |
| MS.gene057289 | MS.gene88945 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene057330 | MS.gene88945 | 0.808056 | 3.74E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene88945 | 0.801324 | 9.50E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene88945 | 0.812511 | 4.09E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene88945 | 0.81629 | 5.97E-52 | -1.69E-46 |
| MS.gene057476 | MS.gene88945 | 0.817684 | 2.90E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene88945 | 0.807228 | 5.60E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene88945 | 0.81869 | 1.72E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene88945 | 0.887791 | 1.05E-72 | -1.69E-46 |
| MS.gene057823 | MS.gene88945 | 0.891705 | 3.11E-74 | -1.69E-46 |
| MS.gene057825 | MS.gene88945 | 0.825413 | 4.75E-54 | -1.69E-46 |
| MS.gene057826 | MS.gene88945 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene057833 | MS.gene88945 | 0.81553 | 8.82E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene88945 | 0.842404 | 2.64E-58 | -1.69E-46 |
| MS.gene058007 | MS.gene88945 | 0.858249 | 9.38E-63 | -1.69E-46 |
| MS.gene058019 | MS.gene88945 | 0.860244 | 2.36E-63 | -1.69E-46 |
| MS.gene058120 | MS.gene88945 | 0.818995 | 1.47E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene88945 | 0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene88945 | 0.865564 | 5.39E-65 | -1.69E-46 |
| MS.gene058444 | MS.gene88945 | 0.911778 | 4.13E-83 | -1.69E-46 |
| MS.gene058700 | MS.gene88945 | 0.88309 | 6.02E-71 | -1.69E-46 |
| MS.gene058838 | MS.gene88945 | 0.829973 | 3.81E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene88945 | 0.820284 | 7.44E-53 | -1.69E-46 |
| MS.gene058948 | MS.gene88945 | 0.847868 | 8.81E-60 | -1.69E-46 |
| MS.gene058995 | MS.gene88945 | 0.837372 | 5.40E-57 | -1.69E-46 |
| MS.gene059011 | MS.gene88945 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene88945 | 0.824996 | 5.96E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene88945 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene88945 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene88945 | 0.850158 | 2.03E-60 | -1.69E-46 |
| MS.gene059455 | MS.gene88945 | 0.863848 | 1.86E-64 | -1.69E-46 |
| MS.gene059597 | MS.gene88945 | 0.809933 | 1.48E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene88945 | 0.84965 | 2.82E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene88945 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene88945 | 0.839651 | 1.40E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene88945 | 0.835281 | 1.84E-56 | -1.69E-46 |
| MS.gene059695 | MS.gene88945 | 0.845208 | 4.69E-59 | -1.69E-46 |
| MS.gene059807 | MS.gene88945 | 0.819595 | 1.07E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene88945 | 0.800587 | 1.34E-48 | -1.69E-46 |
| MS.gene060372 | MS.gene88945 | 0.841316 | 5.12E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene88945 | 0.858956 | 5.77E-63 | -1.69E-46 |
| MS.gene060485 | MS.gene88945 | 0.841598 | 4.31E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene88945 | 0.828063 | 1.11E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene88945 | 0.864276 | 1.37E-64 | -1.69E-46 |
| MS.gene060837 | MS.gene88945 | 0.846098 | 2.69E-59 | -1.69E-46 |
| MS.gene06097 | MS.gene88945 | 0.802618 | 5.15E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene88945 | 0.823211 | 1.56E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene88945 | 0.81432 | 1.64E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene88945 | 0.850219 | 1.96E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88945.t1 | MTR_1g026125 | 90.365 | 301 | 16 | 4 | 10 | 304 | 5 | 298 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88945.t1 | AT1G76080 | 63.898 | 313 | 93 | 6 | 1 | 304 | 1 | 302 | 2.18e-136 | 388 |
Find 48 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGAGATATACCCTTTCT+TGG | 0.236936 | 1.3:+157878 | MS.gene88945:CDS |
| TGTGGTAGGTATGTTGGTTC+AGG | 0.274596 | 1.3:+158383 | MS.gene88945:CDS |
| CGTTGAGTTTCTTCTTGTTA+TGG | 0.286019 | 1.3:+157926 | MS.gene88945:CDS |
| GAGGGATATGGAAGTTGTTC+AGG | 0.305188 | 1.3:+158325 | MS.gene88945:CDS |
| TGAGGGTTTGCATATGAAAT+TGG | 0.324749 | 1.3:-157574 | None:intergenic |
| AGCTGCTGTGCCTGTTGCTT+TGG | 0.336628 | 1.3:-157724 | None:intergenic |
| GTTGAGTTTCTTCTTGTTAT+GGG | 0.337593 | 1.3:+157927 | MS.gene88945:CDS |
| GAATGAAGGGTAAGGAAGTT+AGG | 0.357510 | 1.3:-157621 | None:intergenic |
| AAGCTTATTGTTCTTGATGT+TGG | 0.379209 | 1.3:+158176 | MS.gene88945:CDS |
| CGTCGTTACATGTTCGGCTT+AGG | 0.394333 | 1.3:-157905 | None:intergenic |
| TACTACGGTGATAACCATTC+AGG | 0.418710 | 1.3:+158089 | MS.gene88945:CDS |
| ACATTGTGGGCCATGTGTTA+AGG | 0.424051 | 1.3:+158205 | MS.gene88945:CDS |
| ACATCACCAACAAGCATGTC+TGG | 0.428494 | 1.3:-158062 | None:intergenic |
| GTGGTAGGTATGTTGGTTCA+GGG | 0.432018 | 1.3:+158384 | MS.gene88945:CDS |
| AACTCATTGGTGAAATTCTC+AGG | 0.435220 | 1.3:+158414 | MS.gene88945:CDS |
| ATTAGAGATGGTAAGATTTG+TGG | 0.439626 | 1.3:+158365 | MS.gene88945:CDS |
| GAAATTGAAGGAGGGATTGA+GGG | 0.440827 | 1.3:-157591 | None:intergenic |
| CGGCTTAGGTCAACCAAGAA+AGG | 0.444183 | 1.3:-157891 | None:intergenic |
| AAGATTTGTGGTAGGTATGT+TGG | 0.445880 | 1.3:+158377 | MS.gene88945:CDS |
| TTAGGATGAGTTGAAATTGA+AGG | 0.445917 | 1.3:-157603 | None:intergenic |
| TGAAATTGAAGGAGGGATTG+AGG | 0.455754 | 1.3:-157592 | None:intergenic |
| GTTGTTATCACCAAAGCAAC+AGG | 0.459253 | 1.3:+157714 | MS.gene88945:CDS |
| ATTCATGAAGAAGAAGCTAT+TGG | 0.470180 | 1.3:+158038 | MS.gene88945:CDS |
| AAGAAGAACGAAGAGAATGA+AGG | 0.480454 | 1.3:-157635 | None:intergenic |
| AGGTATGTTGGTTCAGGGAA+AGG | 0.482216 | 1.3:+158389 | MS.gene88945:CDS |
| ACTCAACGTCGTTACATGTT+CGG | 0.489256 | 1.3:-157911 | None:intergenic |
| ATGTTGGTCTTAAACATTGT+GGG | 0.490241 | 1.3:+158192 | MS.gene88945:CDS |
| AGAAGAACGAAGAGAATGAA+GGG | 0.507243 | 1.3:-157634 | None:intergenic |
| AACGAAGAGAATGAAGGGTA+AGG | 0.514490 | 1.3:-157629 | None:intergenic |
| AGAACTCTGCAAAAGAGAAA+AGG | 0.515029 | 1.3:+157971 | MS.gene88945:CDS |
| GGATGAGTTGAAATTGAAGG+AGG | 0.516103 | 1.3:-157600 | None:intergenic |
| AATAAGTAACACGAACTCCT+TGG | 0.520146 | 1.3:-158439 | None:intergenic |
| TCAGGGAAAGGTGAACTCAT+TGG | 0.523543 | 1.3:+158401 | MS.gene88945:CDS |
| CTTGACAGCTTAATCACTGT+CGG | 0.540890 | 1.3:-158233 | None:intergenic |
| ATTGGTCCAGACATGCTTGT+TGG | 0.551371 | 1.3:+158056 | MS.gene88945:CDS |
| GATGAGTTGAAATTGAAGGA+GGG | 0.552894 | 1.3:-157599 | None:intergenic |
| AGATGTTGAGAAACTTATTG+AGG | 0.553117 | 1.3:+158136 | MS.gene88945:CDS |
| ATTCATTCTACTTCTCGGGT+AGG | 0.557229 | 1.3:+157678 | MS.gene88945:CDS |
| GGCTTAGGTCAACCAAGAAA+GGG | 0.570139 | 1.3:-157890 | None:intergenic |
| GATGTTGGTCTTAAACATTG+TGG | 0.582468 | 1.3:+158191 | MS.gene88945:CDS |
| GTTGGTGATGTGTTATACTA+CGG | 0.591943 | 1.3:+158074 | MS.gene88945:CDS |
| GTGAGTGATTGTAGTAGCCA+TGG | 0.593491 | 1.3:-157547 | None:intergenic |
| GAAGTTGCACTACACCTGAA+TGG | 0.604581 | 1.3:-158103 | None:intergenic |
| TGAGTGATTGTAGTAGCCAT+GGG | 0.617890 | 1.3:-157546 | None:intergenic |
| GAGATGGTAAGATTTGTGGT+AGG | 0.631571 | 1.3:+158369 | MS.gene88945:CDS |
| GTCGGATAAACCTTAACACA+TGG | 0.636213 | 1.3:-158215 | None:intergenic |
| GGTGAAATTCTCAGGTACCA+AGG | 0.658840 | 1.3:+158422 | MS.gene88945:CDS |
| CTCTTGTAGAAAGTGAAGTG+TGG | 0.692063 | 1.3:-158005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAATTCATTCTACTTCTC+GGG | + | chr1.3:157674-157693 | MS.gene88945:CDS | 25.0% |
| ! | CAAAAATTCATTCTACTTCT+CGG | + | chr1.3:157673-157692 | MS.gene88945:CDS | 25.0% |
| ! | TCTCTAATGAACAAAAAAGT+AGG | - | chr1.3:158353-158372 | None:intergenic | 25.0% |
| !!! | ACTTTTTTGTTCATTAGAGA+TGG | + | chr1.3:158353-158372 | MS.gene88945:CDS | 25.0% |
| !!! | ATGATACTGTTATTTTTGCA+AGG | + | chr1.3:158264-158283 | MS.gene88945:CDS | 25.0% |
| AAGCTTATTGTTCTTGATGT+TGG | + | chr1.3:158176-158195 | MS.gene88945:CDS | 30.0% | |
| AGATGTTGAGAAACTTATTG+AGG | + | chr1.3:158136-158155 | MS.gene88945:CDS | 30.0% | |
| ATTAGAGATGGTAAGATTTG+TGG | + | chr1.3:158365-158384 | MS.gene88945:CDS | 30.0% | |
| ATTCATGAAGAAGAAGCTAT+TGG | + | chr1.3:158038-158057 | MS.gene88945:CDS | 30.0% | |
| ! | ATAGTTGTATGCAGTTTTTG+AGG | + | chr1.3:158306-158325 | MS.gene88945:CDS | 30.0% |
| ! | CGAGAAGTAGAATGAATTTT+TGG | - | chr1.3:157675-157694 | None:intergenic | 30.0% |
| ! | GTTGAGTTTCTTCTTGTTAT+GGG | + | chr1.3:157927-157946 | MS.gene88945:CDS | 30.0% |
| ! | TAGTTGTATGCAGTTTTTGA+GGG | + | chr1.3:158307-158326 | MS.gene88945:CDS | 30.0% |
| ! | TTAGGATGAGTTGAAATTGA+AGG | - | chr1.3:157606-157625 | None:intergenic | 30.0% |
| !! | ATGTTGGTCTTAAACATTGT+GGG | + | chr1.3:158192-158211 | MS.gene88945:CDS | 30.0% |
| !!! | GTTATTTTTGCAAGGATGAA+TGG | + | chr1.3:158272-158291 | MS.gene88945:CDS | 30.0% |
| AACTCATTGGTGAAATTCTC+AGG | + | chr1.3:158414-158433 | MS.gene88945:CDS | 35.0% | |
| AAGAAGAACGAAGAGAATGA+AGG | - | chr1.3:157638-157657 | None:intergenic | 35.0% | |
| AAGATTTGTGGTAGGTATGT+TGG | + | chr1.3:158377-158396 | MS.gene88945:CDS | 35.0% | |
| AATAAGTAACACGAACTCCT+TGG | - | chr1.3:158442-158461 | None:intergenic | 35.0% | |
| AGAACTCTGCAAAAGAGAAA+AGG | + | chr1.3:157971-157990 | MS.gene88945:CDS | 35.0% | |
| AGAAGAACGAAGAGAATGAA+GGG | - | chr1.3:157637-157656 | None:intergenic | 35.0% | |
| CATTGAGATATACCCTTTCT+TGG | + | chr1.3:157878-157897 | MS.gene88945:CDS | 35.0% | |
| CGTTGAGTTTCTTCTTGTTA+TGG | + | chr1.3:157926-157945 | MS.gene88945:CDS | 35.0% | |
| TGAGGGTTTGCATATGAAAT+TGG | - | chr1.3:157577-157596 | None:intergenic | 35.0% | |
| ! | GATGAGTTGAAATTGAAGGA+GGG | - | chr1.3:157602-157621 | None:intergenic | 35.0% |
| !! | GATGTTGGTCTTAAACATTG+TGG | + | chr1.3:158191-158210 | MS.gene88945:CDS | 35.0% |
| !! | GTTGGTGATGTGTTATACTA+CGG | + | chr1.3:158074-158093 | MS.gene88945:CDS | 35.0% |
| !! | TATGCAGTTTTTGAGGGATA+TGG | + | chr1.3:158313-158332 | MS.gene88945:CDS | 35.0% |
| AACGAAGAGAATGAAGGGTA+AGG | - | chr1.3:157632-157651 | None:intergenic | 40.0% | |
| ACTCAACGTCGTTACATGTT+CGG | - | chr1.3:157914-157933 | None:intergenic | 40.0% | |
| ATTCATTCTACTTCTCGGGT+AGG | + | chr1.3:157678-157697 | MS.gene88945:CDS | 40.0% | |
| CTCTTGTAGAAAGTGAAGTG+TGG | - | chr1.3:158008-158027 | None:intergenic | 40.0% | |
| CTTGACAGCTTAATCACTGT+CGG | - | chr1.3:158236-158255 | None:intergenic | 40.0% | |
| GAAATTGAAGGAGGGATTGA+GGG | - | chr1.3:157594-157613 | None:intergenic | 40.0% | |
| GAATGAAGGGTAAGGAAGTT+AGG | - | chr1.3:157624-157643 | None:intergenic | 40.0% | |
| GAGATGGTAAGATTTGTGGT+AGG | + | chr1.3:158369-158388 | MS.gene88945:CDS | 40.0% | |
| GTCGGATAAACCTTAACACA+TGG | - | chr1.3:158218-158237 | None:intergenic | 40.0% | |
| GTTGTTATCACCAAAGCAAC+AGG | + | chr1.3:157714-157733 | MS.gene88945:CDS | 40.0% | |
| TACTACGGTGATAACCATTC+AGG | + | chr1.3:158089-158108 | MS.gene88945:CDS | 40.0% | |
| TGAAATTGAAGGAGGGATTG+AGG | - | chr1.3:157595-157614 | None:intergenic | 40.0% | |
| ! | GGATGAGTTGAAATTGAAGG+AGG | - | chr1.3:157603-157622 | None:intergenic | 40.0% |
| ACATCACCAACAAGCATGTC+TGG | - | chr1.3:158065-158084 | None:intergenic | 45.0% | |
| ACATTGTGGGCCATGTGTTA+AGG | + | chr1.3:158205-158224 | MS.gene88945:CDS | 45.0% | |
| ATTGGTCCAGACATGCTTGT+TGG | + | chr1.3:158056-158075 | MS.gene88945:CDS | 45.0% | |
| GAAGTTGCACTACACCTGAA+TGG | - | chr1.3:158106-158125 | None:intergenic | 45.0% | |
| GAGGGATATGGAAGTTGTTC+AGG | + | chr1.3:158325-158344 | MS.gene88945:CDS | 45.0% | |
| GGCTTAGGTCAACCAAGAAA+GGG | - | chr1.3:157893-157912 | None:intergenic | 45.0% | |
| GGTGAAATTCTCAGGTACCA+AGG | + | chr1.3:158422-158441 | MS.gene88945:CDS | 45.0% | |
| TCAGGGAAAGGTGAACTCAT+TGG | + | chr1.3:158401-158420 | MS.gene88945:CDS | 45.0% | |
| !! | AGGTATGTTGGTTCAGGGAA+AGG | + | chr1.3:158389-158408 | MS.gene88945:CDS | 45.0% |
| !! | GTGGTAGGTATGTTGGTTCA+GGG | + | chr1.3:158384-158403 | MS.gene88945:CDS | 45.0% |
| !! | TGTGGTAGGTATGTTGGTTC+AGG | + | chr1.3:158383-158402 | MS.gene88945:CDS | 45.0% |
| CGGCTTAGGTCAACCAAGAA+AGG | - | chr1.3:157894-157913 | None:intergenic | 50.0% | |
| CGTCGTTACATGTTCGGCTT+AGG | - | chr1.3:157908-157927 | None:intergenic | 50.0% | |
| ! | AGCTGCTGTGCCTGTTGCTT+TGG | - | chr1.3:157727-157746 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 157549 | 158463 | 157549 | ID=MS.gene88945 |
| chr1.3 | mRNA | 157549 | 158463 | 157549 | ID=MS.gene88945.t1;Parent=MS.gene88945 |
| chr1.3 | exon | 157549 | 158463 | 157549 | ID=MS.gene88945.t1.exon1;Parent=MS.gene88945.t1 |
| chr1.3 | CDS | 157549 | 158463 | 157549 | ID=cds.MS.gene88945.t1;Parent=MS.gene88945.t1 |
| Gene Sequence |
| Protein sequence |
