Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57001.t1 | XP_003615753.2 | 91.7 | 744 | 14 | 1 | 1 | 696 | 1 | 744 | 0.00E+00 | 1332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57001.t1 | Q9MB58 | 72.2 | 661 | 169 | 5 | 46 | 696 | 89 | 744 | 1.7e-269 | 929.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57001.t1 | G7K732 | 91.7 | 744 | 14 | 1 | 1 | 696 | 1 | 744 | 0.0e+00 | 1332.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene57001 | 0.855196 | 7.42E-62 | -1.69E-46 |
| MS.gene049173 | MS.gene57001 | 0.831952 | 1.25E-55 | -1.69E-46 |
| MS.gene049351 | MS.gene57001 | 0.801327 | 9.49E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene57001 | 0.856076 | 4.11E-62 | -1.69E-46 |
| MS.gene049491 | MS.gene57001 | 0.810297 | 1.24E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene57001 | 0.848352 | 6.47E-60 | -1.69E-46 |
| MS.gene049661 | MS.gene57001 | 0.847254 | 1.30E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene57001 | 0.835884 | 1.29E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene57001 | 0.849207 | 3.75E-60 | -1.69E-46 |
| MS.gene050076 | MS.gene57001 | 0.841601 | 4.31E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene57001 | 0.848586 | 5.58E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene57001 | 0.808797 | 2.60E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene57001 | 0.808256 | 3.39E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene57001 | 0.867548 | 1.26E-65 | -1.69E-46 |
| MS.gene050464 | MS.gene57001 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene57001 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene57001 | 0.856049 | 4.18E-62 | -1.69E-46 |
| MS.gene050625 | MS.gene57001 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene57001 | 0.852547 | 4.30E-61 | -1.69E-46 |
| MS.gene050747 | MS.gene57001 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene57001 | 0.836149 | 1.11E-56 | -1.69E-46 |
| MS.gene050770 | MS.gene57001 | 0.838318 | 3.09E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene57001 | 0.829259 | 5.69E-55 | -1.69E-46 |
| MS.gene050783 | MS.gene57001 | 0.856064 | 4.14E-62 | -1.69E-46 |
| MS.gene05101 | MS.gene57001 | 0.885813 | 5.88E-72 | -1.69E-46 |
| MS.gene05105 | MS.gene57001 | 0.875158 | 3.84E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene57001 | 0.846679 | 1.87E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene57001 | 0.812745 | 3.63E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene57001 | 0.847297 | 1.26E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene57001 | 0.867486 | 1.32E-65 | -1.69E-46 |
| MS.gene051692 | MS.gene57001 | 0.87991 | 8.47E-70 | -1.69E-46 |
| MS.gene051858 | MS.gene57001 | 0.815124 | 1.09E-51 | -1.69E-46 |
| MS.gene051877 | MS.gene57001 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene57001 | 0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene57001 | 0.819726 | 9.98E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene57001 | 0.828972 | 6.68E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene57001 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene57001 | 0.865077 | 7.67E-65 | -1.69E-46 |
| MS.gene052322 | MS.gene57001 | 0.866234 | 3.31E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene57001 | 0.812221 | 4.73E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene57001 | 0.833091 | 6.51E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene57001 | 0.85885 | 6.20E-63 | -1.69E-46 |
| MS.gene052481 | MS.gene57001 | 0.880966 | 3.55E-70 | -1.69E-46 |
| MS.gene052484 | MS.gene57001 | 0.857902 | 1.19E-62 | -1.69E-46 |
| MS.gene052485 | MS.gene57001 | 0.849233 | 3.69E-60 | -1.69E-46 |
| MS.gene052501 | MS.gene57001 | 0.832547 | 8.89E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene57001 | 0.832246 | 1.05E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene57001 | 0.801111 | 1.05E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene57001 | 0.842703 | 2.20E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene57001 | 0.870402 | 1.50E-66 | -1.69E-46 |
| MS.gene053104 | MS.gene57001 | 0.846952 | 1.57E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene57001 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene57001 | 0.847145 | 1.39E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene57001 | 0.857244 | 1.86E-62 | -1.69E-46 |
| MS.gene053213 | MS.gene57001 | 0.826984 | 2.01E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene57001 | 0.812237 | 4.69E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene57001 | 0.864014 | 1.65E-64 | -1.69E-46 |
| MS.gene053449 | MS.gene57001 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene57001 | 0.804003 | 2.66E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene57001 | 0.814814 | 1.27E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene57001 | 0.80936 | 1.97E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene57001 | 0.823844 | 1.11E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene57001 | 0.851176 | 1.05E-60 | -1.69E-46 |
| MS.gene05455 | MS.gene57001 | 0.823652 | 1.23E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene57001 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene57001 | 0.825217 | 5.29E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene57001 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene57001 | 0.827317 | 1.67E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene57001 | 0.820768 | 5.76E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene57001 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene57001 | 0.880506 | 5.19E-70 | -1.69E-46 |
| MS.gene055206 | MS.gene57001 | 0.828075 | 1.10E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene57001 | 0.819711 | 1.01E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene57001 | 0.817947 | 2.53E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene57001 | 0.806909 | 6.54E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene57001 | 0.825172 | 5.42E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene57001 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene055428 | MS.gene57001 | 0.844675 | 6.53E-59 | -1.69E-46 |
| MS.gene055499 | MS.gene57001 | 0.836529 | 8.87E-57 | -1.69E-46 |
| MS.gene055633 | MS.gene57001 | 0.822773 | 1.98E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene57001 | 0.860965 | 1.43E-63 | -1.69E-46 |
| MS.gene055722 | MS.gene57001 | 0.862557 | 4.66E-64 | -1.69E-46 |
| MS.gene05592 | MS.gene57001 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene57001 | 0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene57001 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene57001 | 0.844495 | 7.30E-59 | -1.69E-46 |
| MS.gene056374 | MS.gene57001 | 0.82633 | 2.88E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene57001 | 0.86626 | 3.25E-65 | -1.69E-46 |
| MS.gene056410 | MS.gene57001 | 0.843718 | 1.18E-58 | -1.69E-46 |
| MS.gene056452 | MS.gene57001 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene056497 | MS.gene57001 | 0.814739 | 1.32E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene57001 | 0.829294 | 5.58E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene57001 | 0.814638 | 1.39E-51 | -1.69E-46 |
| MS.gene05664 | MS.gene57001 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene57001 | 0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene57001 | 0.817652 | 2.95E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene57001 | 0.838091 | 3.53E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene57001 | 0.849534 | 3.04E-60 | -1.69E-46 |
| MS.gene057123 | MS.gene57001 | 0.833495 | 5.16E-56 | -1.69E-46 |
| MS.gene057124 | MS.gene57001 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene57001 | 0.854191 | 1.45E-61 | -1.69E-46 |
| MS.gene057146 | MS.gene57001 | 0.851687 | 7.55E-61 | -1.69E-46 |
| MS.gene057196 | MS.gene57001 | 0.822446 | 2.36E-53 | -1.69E-46 |
| MS.gene057295 | MS.gene57001 | 0.855651 | 5.47E-62 | -1.69E-46 |
| MS.gene057330 | MS.gene57001 | 0.827645 | 1.40E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene57001 | 0.836989 | 6.77E-57 | -1.69E-46 |
| MS.gene05733 | MS.gene57001 | 0.830553 | 2.75E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene57001 | 0.870076 | 1.92E-66 | -1.69E-46 |
| MS.gene057450 | MS.gene57001 | 0.802381 | 5.76E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene57001 | 0.806592 | 7.63E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene57001 | 0.854213 | 1.43E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene57001 | 0.852058 | 5.92E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene57001 | 0.812528 | 4.05E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene57001 | 0.8328 | 7.69E-56 | -1.69E-46 |
| MS.gene058006 | MS.gene57001 | 0.827946 | 1.18E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene57001 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene57001 | 0.883792 | 3.32E-71 | -1.69E-46 |
| MS.gene058082 | MS.gene57001 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene57001 | 0.808889 | 2.48E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene57001 | 0.835863 | 1.31E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene57001 | 0.860644 | 1.79E-63 | -1.69E-46 |
| MS.gene058376 | MS.gene57001 | 0.803421 | 3.51E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene57001 | 0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene058444 | MS.gene57001 | 0.819143 | 1.36E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene57001 | 0.856262 | 3.62E-62 | -1.69E-46 |
| MS.gene058700 | MS.gene57001 | 0.830045 | 3.66E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene57001 | 0.835465 | 1.65E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene57001 | 0.805508 | 1.29E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene57001 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene57001 | 0.845976 | 2.90E-59 | -1.69E-46 |
| MS.gene059141 | MS.gene57001 | 0.822153 | 2.76E-53 | -1.69E-46 |
| MS.gene059326 | MS.gene57001 | 0.812405 | 4.31E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene57001 | 0.824402 | 8.23E-54 | -1.69E-46 |
| MS.gene059455 | MS.gene57001 | 0.850144 | 2.05E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene57001 | 0.866876 | 2.07E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene57001 | 0.862059 | 6.62E-64 | -1.69E-46 |
| MS.gene059676 | MS.gene57001 | 0.865151 | 7.27E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene57001 | 0.896388 | 3.87E-76 | -1.69E-46 |
| MS.gene059692 | MS.gene57001 | 0.89467 | 1.98E-75 | -1.69E-46 |
| MS.gene059695 | MS.gene57001 | 0.901654 | 2.15E-78 | -1.69E-46 |
| MS.gene059718 | MS.gene57001 | 0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene57001 | 0.80241 | 5.68E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene57001 | 0.813362 | 2.66E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene57001 | 0.850593 | 1.54E-60 | -1.69E-46 |
| MS.gene060193 | MS.gene57001 | 0.833999 | 3.86E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene57001 | 0.815261 | 1.01E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene57001 | 0.898966 | 3.16E-77 | -1.69E-46 |
| MS.gene060469 | MS.gene57001 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene57001 | 0.853273 | 2.66E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene57001 | 0.805464 | 1.32E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene57001 | 0.818887 | 1.55E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene57001 | 0.845336 | 4.33E-59 | -1.69E-46 |
| MS.gene06092 | MS.gene57001 | 0.823951 | 1.05E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene57001 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene57001 | 0.8339 | 4.09E-56 | -1.69E-46 |
| MS.gene061051 | MS.gene57001 | -0.835525 | 1.60E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene57001 | 0.816388 | 5.68E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene57001 | 0.864239 | 1.40E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57001.t1 | MTR_5g071900 | 91.667 | 744 | 14 | 1 | 1 | 696 | 1 | 744 | 0.0 | 1396 |
| MS.gene57001.t1 | MTR_3g464770 | 77.880 | 651 | 133 | 2 | 46 | 696 | 97 | 736 | 0.0 | 1013 |
| MS.gene57001.t1 | MTR_3g464770 | 77.880 | 651 | 133 | 2 | 46 | 696 | 15 | 654 | 0.0 | 1012 |
| MS.gene57001.t1 | MTR_3g464770 | 77.573 | 651 | 133 | 3 | 46 | 696 | 97 | 734 | 0.0 | 1003 |
| MS.gene57001.t1 | MTR_3g464770 | 73.674 | 509 | 123 | 2 | 46 | 554 | 97 | 594 | 0.0 | 731 |
| MS.gene57001.t1 | MTR_8g066450 | 81.132 | 159 | 29 | 1 | 330 | 487 | 1 | 159 | 8.05e-88 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57001.t1 | AT1G07110 | 72.163 | 661 | 169 | 5 | 46 | 696 | 89 | 744 | 0.0 | 949 |
| MS.gene57001.t1 | AT3G30200 | 62.821 | 78 | 27 | 1 | 96 | 173 | 50 | 125 | 6.31e-20 | 94.4 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAAAATCTTCTAGTTTA+AGG | 0.070887 | 5.1:+55372353 | MS.gene57001:CDS |
| TTTATTGCAGATTATCTTTC+TGG | 0.110976 | 5.1:+55375972 | MS.gene57001:intron |
| GCATGTTCTTCTTGATTTCT+TGG | 0.127562 | 5.1:-55381194 | None:intergenic |
| AGTTAAATATTTACAGTTTC+AGG | 0.169637 | 5.1:-55370104 | None:intergenic |
| CAAGGTGAATTCTCATCTTT+TGG | 0.188916 | 5.1:-55368736 | None:intergenic |
| AAGAATTGCCTTCTCATAAT+TGG | 0.211422 | 5.1:-55376196 | None:intergenic |
| TCCTCGTGGGGAGTCTTATT+TGG | 0.222816 | 5.1:+55381416 | MS.gene57001:CDS |
| CCATGCCGAGTGAGTAATAT+TGG | 0.285665 | 5.1:-55379489 | None:intergenic |
| CGCTCAAGCTCAATAATTAC+AGG | 0.286406 | 5.1:-55381545 | None:intergenic |
| GAGATAGAATTGGGAGTTAC+AGG | 0.289073 | 5.1:+55381961 | MS.gene57001:CDS |
| GAATGTCTCTTCTGCGAGTT+TGG | 0.290246 | 5.1:+55369923 | MS.gene57001:intron |
| AGCTAGTTGGAGGGCTTATA+AGG | 0.303691 | 5.1:+55368906 | MS.gene57001:CDS |
| CAGAAGCTTGCCAAATTTGT+TGG | 0.309090 | 5.1:+55380380 | MS.gene57001:CDS |
| CGCCAAATGTTTATCCTCCT+TGG | 0.313778 | 5.1:-55372610 | None:intergenic |
| GCATATACAGCAGATGAATT+TGG | 0.316849 | 5.1:-55369990 | None:intergenic |
| GCAGCTGGAGCTGTTGCAGC+TGG | 0.326927 | 5.1:+55372561 | MS.gene57001:CDS |
| ACAGAAACATAGAGCAATTC+AGG | 0.344331 | 5.1:-55367371 | None:intergenic |
| AAGAAACATGCTGATGAAAT+TGG | 0.345861 | 5.1:+55375836 | MS.gene57001:CDS |
| TTACGTGCCTCTATGCCTTC+AGG | 0.365144 | 5.1:-55374712 | None:intergenic |
| CGTAGCCCAGCCTCAAAATC+TGG | 0.366497 | 5.1:-55376153 | None:intergenic |
| GCAACAGCTCCAGCTGCTGC+TGG | 0.372798 | 5.1:-55372555 | None:intergenic |
| CAAAGTTTCTTCCTTTGATC+TGG | 0.373266 | 5.1:+55368882 | MS.gene57001:CDS |
| TGCCGTTGCTGATCAGATGC+TGG | 0.374741 | 5.1:+55372584 | MS.gene57001:CDS |
| TCGCTGCTTGCTACTGTTTG+TGG | 0.379212 | 5.1:-55375814 | None:intergenic |
| TTGGAGGAGATCCTGCATTA+AGG | 0.386451 | 5.1:+55379541 | MS.gene57001:CDS |
| TCAATATCCTGGAGCCATCT+AGG | 0.388149 | 5.1:+55372215 | MS.gene57001:CDS |
| CCAAGTCGCGTACTTGTTGC+AGG | 0.391682 | 5.1:+55368775 | MS.gene57001:CDS |
| TACTATAATAGAGATAGAAT+TGG | 0.394214 | 5.1:+55381951 | MS.gene57001:CDS |
| TTTGAAAGAAATTCCACATA+TGG | 0.394607 | 5.1:+55381740 | MS.gene57001:CDS |
| CCTCAAGCACGGAGCTAGTC+AGG | 0.398596 | 5.1:+55373372 | MS.gene57001:CDS |
| ACCTTAGGAAATCCAACAAT+GGG | 0.399597 | 5.1:-55381031 | None:intergenic |
| ATACCCACTATTCCGTGATC+TGG | 0.402871 | 5.1:-55370033 | None:intergenic |
| TAAGGAGAACTTTCATCCTT+CGG | 0.403360 | 5.1:+55368924 | MS.gene57001:CDS |
| GATAATGTGAGAGGCAGAAT+TGG | 0.406339 | 5.1:+55379522 | MS.gene57001:CDS |
| CCTTTGATCTGGCAGCTAGT+TGG | 0.408429 | 5.1:+55368893 | MS.gene57001:CDS |
| GTATATCTAGGTAGCAAAAC+TGG | 0.411514 | 5.1:+55375652 | MS.gene57001:intron |
| CGACATTCAGACACCCTAGA+TGG | 0.411807 | 5.1:-55372229 | None:intergenic |
| CTGACAGCAGGCCCCATTGT+TGG | 0.416033 | 5.1:+55381019 | MS.gene57001:CDS |
| CTATTGCAGATCCCGCAAAA+AGG | 0.420982 | 5.1:+55381374 | MS.gene57001:intron |
| AGAGAAAAGATACAAACTAA+TGG | 0.425105 | 5.1:+55381990 | MS.gene57001:CDS |
| AATCCAATCCGCGCTATCGC+TGG | 0.428193 | 5.1:+55367404 | MS.gene57001:CDS |
| GCCAAATGTTTATCCTCCTT+GGG | 0.434723 | 5.1:-55372609 | None:intergenic |
| TTTGGAGAACTTGAGGGAGC+TGG | 0.436441 | 5.1:-55369972 | None:intergenic |
| GTTTAAGCTTGATAATGATC+AGG | 0.436859 | 5.1:+55368828 | MS.gene57001:CDS |
| TTGATCTGGCAGCTAGTTGG+AGG | 0.444690 | 5.1:+55368896 | MS.gene57001:CDS |
| ACAAGATATCTTCGCTGGTT+GGG | 0.446237 | 5.1:+55372912 | MS.gene57001:CDS |
| TCCCAAGGAGGATAAACATT+TGG | 0.450552 | 5.1:+55372608 | MS.gene57001:CDS |
| AATTGTTTCAACAGTGAGGC+TGG | 0.453800 | 5.1:+55380344 | MS.gene57001:intron |
| CCCCATTGTTGGATTTCCTA+AGG | 0.456855 | 5.1:+55381030 | MS.gene57001:CDS |
| AATTCATTTCCAGCAGCAGC+TGG | 0.462347 | 5.1:+55372546 | MS.gene57001:CDS |
| TGGTGAGATACCACAACAAC+AGG | 0.467671 | 5.1:-55381578 | None:intergenic |
| CACTCGGCATGGAGAAAGTC+AGG | 0.470560 | 5.1:+55379500 | MS.gene57001:CDS |
| TTCATCCTTCGGCTGTACGC+GGG | 0.471483 | 5.1:+55368935 | MS.gene57001:CDS |
| CATGCCGAGTGAGTAATATT+GGG | 0.473038 | 5.1:-55379488 | None:intergenic |
| AATCCCAGATCACGGAATAG+TGG | 0.473281 | 5.1:+55370029 | MS.gene57001:CDS |
| TTTCCAGCGATAGCGCGGAT+TGG | 0.477364 | 5.1:-55367407 | None:intergenic |
| TACAAGATATCTTCGCTGGT+TGG | 0.483415 | 5.1:+55372911 | MS.gene57001:CDS |
| AATGTGAGAGGCAGAATTGG+AGG | 0.484111 | 5.1:+55379525 | MS.gene57001:CDS |
| GCTCTATGTTTCTGTGAAGA+TGG | 0.484266 | 5.1:+55367379 | MS.gene57001:CDS |
| CATTTGAAGATATGATAACT+TGG | 0.486436 | 5.1:+55375675 | MS.gene57001:CDS |
| ACTATAATAGAGATAGAATT+GGG | 0.486554 | 5.1:+55381952 | MS.gene57001:CDS |
| TATTTGCCCACCACGTCCAC+TGG | 0.487089 | 5.1:-55376340 | None:intergenic |
| TTGGAGAACTTGAGGGAGCT+GGG | 0.488568 | 5.1:-55369971 | None:intergenic |
| ATATGTGGAATTTCTTTCAA+AGG | 0.489523 | 5.1:-55381738 | None:intergenic |
| TCTGAATTTATGCTGACGTC+GGG | 0.496498 | 5.1:-55368961 | None:intergenic |
| GGAGATGGAGGTCAATATCC+TGG | 0.498559 | 5.1:+55372204 | MS.gene57001:intron |
| AACATAACCACTGTCATCTC+CGG | 0.498727 | 5.1:-55370075 | None:intergenic |
| ATTGGCTGAAGGAAGATGTA+AGG | 0.499211 | 5.1:+55375854 | MS.gene57001:CDS |
| AATTGTTCGCTGTAGTGTAC+TGG | 0.501882 | 5.1:-55380996 | None:intergenic |
| TTGGATGCAAGAAGGTGGTC+AGG | 0.501888 | 5.1:+55375694 | MS.gene57001:CDS |
| CCTGCAACAAGTACGCGACT+TGG | 0.502108 | 5.1:-55368775 | None:intergenic |
| GATGAATTTGGAGAACTTGA+GGG | 0.507843 | 5.1:-55369978 | None:intergenic |
| AAAACACTTCAACGTTGGTA+AGG | 0.507923 | 5.1:+55372944 | MS.gene57001:CDS |
| TACCCACTATTCCGTGATCT+GGG | 0.513559 | 5.1:-55370032 | None:intergenic |
| TCATATATTACCTCCATATG+TGG | 0.516009 | 5.1:-55381753 | None:intergenic |
| ACATACACTTCTGCATAGTC+AGG | 0.517603 | 5.1:-55376057 | None:intergenic |
| CAATATCAGTGGCTACCTAC+CGG | 0.518287 | 5.1:+55378435 | MS.gene57001:CDS |
| AACTTACAAGATATCTTCGC+TGG | 0.526277 | 5.1:+55372907 | MS.gene57001:CDS |
| GCACTTGATGAGATAGATGC+CGG | 0.529329 | 5.1:+55381150 | MS.gene57001:CDS |
| CCAACACCCCTATCAACAAA+AGG | 0.533668 | 5.1:-55372319 | None:intergenic |
| AGATGAATTTGGAGAACTTG+AGG | 0.533944 | 5.1:-55369979 | None:intergenic |
| CCTGACTAGCTCCGTGCTTG+AGG | 0.534365 | 5.1:-55373372 | None:intergenic |
| CACGCCCAATATTACTCACT+CGG | 0.535632 | 5.1:+55379484 | MS.gene57001:CDS |
| CAGAAACATAGAGCAATTCA+GGG | 0.535845 | 5.1:-55367370 | None:intergenic |
| AGATCACGGAATAGTGGGTA+TGG | 0.539500 | 5.1:+55370035 | MS.gene57001:CDS |
| GCCGTTGCTGATCAGATGCT+GGG | 0.539654 | 5.1:+55372585 | MS.gene57001:CDS |
| CTTATTTGGACGTTATTCAA+AGG | 0.542609 | 5.1:+55381430 | MS.gene57001:CDS |
| TGATCAGATGCTGGGTCCCA+AGG | 0.542618 | 5.1:+55372593 | MS.gene57001:CDS |
| GAGACATACTCATACTCCTC+TGG | 0.543330 | 5.1:-55381216 | None:intergenic |
| CAATATCCTGGAGCCATCTA+GGG | 0.545381 | 5.1:+55372216 | MS.gene57001:CDS |
| TGATCTGGCAGCTAGTTGGA+GGG | 0.547032 | 5.1:+55368897 | MS.gene57001:CDS |
| GAGCATTGCAAGATGGTGCT+AGG | 0.551672 | 5.1:+55368797 | MS.gene57001:CDS |
| AGGCATAGAGGCACGTAATG+AGG | 0.551759 | 5.1:+55374717 | MS.gene57001:CDS |
| ATGAGAACATACCTTAATGC+AGG | 0.552021 | 5.1:-55379552 | None:intergenic |
| CAGACACCCTAGATGGCTCC+AGG | 0.553549 | 5.1:-55372222 | None:intergenic |
| TTTCATCCTTCGGCTGTACG+CGG | 0.555852 | 5.1:+55368934 | MS.gene57001:CDS |
| GGCAGCAATTCATATTCAGC+CGG | 0.557073 | 5.1:+55370056 | MS.gene57001:CDS |
| TAAACATTTGGCGATTGTCA+TGG | 0.557424 | 5.1:+55372620 | MS.gene57001:CDS |
| AATACAAAACACTTCAACGT+TGG | 0.558740 | 5.1:+55372939 | MS.gene57001:CDS |
| AACAATGTCAGCACTGCGAA+AGG | 0.559133 | 5.1:+55372279 | MS.gene57001:CDS |
| TGTTGTTGTGGTATCTCACC+AGG | 0.561725 | 5.1:+55381580 | MS.gene57001:CDS |
| TTAGGTATCGTTATCCTCGT+GGG | 0.562483 | 5.1:+55381403 | MS.gene57001:CDS |
| GAAAGAAATTCCACATATGG+AGG | 0.564239 | 5.1:+55381743 | MS.gene57001:CDS |
| TCAGCACTGCGAAAGGAAGA+TGG | 0.564714 | 5.1:+55372286 | MS.gene57001:CDS |
| AAAGATTTCCAGCGATAGCG+CGG | 0.570884 | 5.1:-55367412 | None:intergenic |
| TTCTGAATTTATGCTGACGT+CGG | 0.571325 | 5.1:-55368962 | None:intergenic |
| CCAACTAGCTGCCAGATCAA+AGG | 0.574144 | 5.1:-55368893 | None:intergenic |
| ATTGACATGGCCAGTGGACG+TGG | 0.575757 | 5.1:+55376330 | MS.gene57001:CDS |
| TTTCGAGCTGACAATCCTGA+AGG | 0.580736 | 5.1:+55374697 | MS.gene57001:CDS |
| CACTTGATGAGATAGATGCC+GGG | 0.581155 | 5.1:+55381151 | MS.gene57001:CDS |
| ATAGATGCCGGGGTGTGTGA+TGG | 0.582570 | 5.1:+55381162 | MS.gene57001:CDS |
| ATCTCTATTATAGTATGAAG+TGG | 0.583438 | 5.1:-55381943 | None:intergenic |
| CAGCGAACAATTCTGACAGC+AGG | 0.584122 | 5.1:+55381007 | MS.gene57001:CDS |
| ATCCCAGATCACGGAATAGT+GGG | 0.585832 | 5.1:+55370030 | MS.gene57001:CDS |
| ACTTGTTAAATCTCTGTCAG+TGG | 0.587981 | 5.1:+55372255 | MS.gene57001:CDS |
| TAGTTTAGACACTGATACCG+AGG | 0.588082 | 5.1:+55372393 | MS.gene57001:CDS |
| GCAACGAGCACCTGTTGTTG+TGG | 0.589016 | 5.1:+55381568 | MS.gene57001:CDS |
| CAGTATCGTCGCCTCAAGCA+CGG | 0.589203 | 5.1:+55373361 | MS.gene57001:intron |
| GGTTTATGAGACGGTAGAAG+AGG | 0.591074 | 5.1:+55376290 | MS.gene57001:intron |
| CTTGTTAAATCTCTGTCAGT+GGG | 0.592635 | 5.1:+55372256 | MS.gene57001:CDS |
| GACGAAGAACTCGACGGTAA+CGG | 0.592771 | 5.1:+55367323 | MS.gene57001:CDS |
| AATATCAGTGGCTACCTACC+GGG | 0.595215 | 5.1:+55378436 | MS.gene57001:CDS |
| ACCCAGCATCTGATCAGCAA+CGG | 0.597212 | 5.1:-55372586 | None:intergenic |
| TCATCCTTCGGCTGTACGCG+GGG | 0.600086 | 5.1:+55368936 | MS.gene57001:CDS |
| ATGATAACTTGGATGCAAGA+AGG | 0.600170 | 5.1:+55375686 | MS.gene57001:CDS |
| TGACAATCCTGAAGGCATAG+AGG | 0.600699 | 5.1:+55374705 | MS.gene57001:CDS |
| CTGTAATTATTGAGCTTGAG+CGG | 0.602405 | 5.1:+55381546 | MS.gene57001:CDS |
| AAAAGACAATTCTGCCCGGT+AGG | 0.604777 | 5.1:-55378450 | None:intergenic |
| AACCTTAGGAAATCCAACAA+TGG | 0.605128 | 5.1:-55381032 | None:intergenic |
| ATGTTCCAATTAGGAGATGG+AGG | 0.605793 | 5.1:+55372192 | MS.gene57001:intron |
| GCGAAAGGAAGATGGTCAGA+GGG | 0.609079 | 5.1:+55372294 | MS.gene57001:CDS |
| CTTAGGTATCGTTATCCTCG+TGG | 0.609423 | 5.1:+55381402 | MS.gene57001:CDS |
| GTTTATGAGACGGTAGAAGA+GGG | 0.613100 | 5.1:+55376291 | MS.gene57001:CDS |
| GGACCCTCCTCAACAAAACA+AGG | 0.614446 | 5.1:-55368754 | None:intergenic |
| TCGTGTAGCCAATTATGAGA+AGG | 0.618596 | 5.1:+55376188 | MS.gene57001:CDS |
| TGCGAAAGGAAGATGGTCAG+AGG | 0.619804 | 5.1:+55372293 | MS.gene57001:CDS |
| ATGATGTAGACATGATTGAA+AGG | 0.619961 | 5.1:+55376007 | MS.gene57001:CDS |
| AGAAGTTCAGACAGAAAGCG+AGG | 0.629548 | 5.1:+55368981 | MS.gene57001:CDS |
| GTTGCAGGAGCATTGCAAGA+TGG | 0.630620 | 5.1:+55368790 | MS.gene57001:CDS |
| TGACAGAGAATCCCAGATCA+CGG | 0.634764 | 5.1:+55370021 | MS.gene57001:CDS |
| GGTACCCCGCGTACAGCCGA+AGG | 0.635082 | 5.1:-55368940 | None:intergenic |
| GTTTAGGTGAACAATATCAG+TGG | 0.636959 | 5.1:+55378424 | MS.gene57001:intron |
| AAAATGATTGACATGGCCAG+TGG | 0.637498 | 5.1:+55376324 | MS.gene57001:CDS |
| GAAAGTCAGGATAATGTGAG+AGG | 0.637995 | 5.1:+55379513 | MS.gene57001:CDS |
| TGTCATTCCATCACACACCC+CGG | 0.646684 | 5.1:-55381169 | None:intergenic |
| CCAATATTACTCACTCGGCA+TGG | 0.649112 | 5.1:+55379489 | MS.gene57001:CDS |
| TAGGTGAGTCTGCCAGCTCG+AGG | 0.649671 | 5.1:+55372864 | MS.gene57001:intron |
| AGCAATTCAGGGATTCGTAA+CGG | 0.650543 | 5.1:-55367359 | None:intergenic |
| GACATGGCCAGTGGACGTGG+TGG | 0.651270 | 5.1:+55376333 | MS.gene57001:CDS |
| CGAGTGAGTAATATTGGGCG+TGG | 0.653694 | 5.1:-55379483 | None:intergenic |
| ATATTACTAGGTTTATGAGA+CGG | 0.659393 | 5.1:+55376281 | MS.gene57001:intron |
| AATCAAGAAGAACATGCCAG+AGG | 0.659584 | 5.1:+55381200 | MS.gene57001:CDS |
| ATGCTGATGAAATTGGCTGA+AGG | 0.664311 | 5.1:+55375843 | MS.gene57001:CDS |
| TAGGTATCGTTATCCTCGTG+GGG | 0.669051 | 5.1:+55381404 | MS.gene57001:CDS |
| ATAACTTGGATGCAAGAAGG+TGG | 0.670683 | 5.1:+55375689 | MS.gene57001:CDS |
| TATTCAGCCGGAGATGACAG+TGG | 0.675066 | 5.1:+55370068 | MS.gene57001:CDS |
| ACATGGCCAGTGGACGTGGT+GGG | 0.683504 | 5.1:+55376334 | MS.gene57001:CDS |
| TCCAAATAAGACTCCCCACG+AGG | 0.688783 | 5.1:-55381417 | None:intergenic |
| TCAGATGCTGGGTCCCAAGG+AGG | 0.702698 | 5.1:+55372596 | MS.gene57001:CDS |
| ATTAGCGACGAAGAACTCGA+CGG | 0.730490 | 5.1:+55367317 | MS.gene57001:CDS |
| ACTTGATGAGATAGATGCCG+GGG | 0.731577 | 5.1:+55381152 | MS.gene57001:CDS |
| CGAAAGGAAGATGGTCAGAG+GGG | 0.735126 | 5.1:+55372295 | MS.gene57001:CDS |
| CCTTAGGAAATCCAACAATG+GGG | 0.747925 | 5.1:-55381030 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 55367308 | 55382017 | 55367308 | ID=MS.gene57001 |
| chr5.1 | mRNA | 55367308 | 55382017 | 55367308 | ID=MS.gene57001.t1;Parent=MS.gene57001 |
| chr5.1 | exon | 55367308 | 55367442 | 55367308 | ID=MS.gene57001.t1.exon1;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55367308 | 55367442 | 55367308 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55368736 | 55369002 | 55368736 | ID=MS.gene57001.t1.exon2;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55368736 | 55369002 | 55368736 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55369924 | 55370112 | 55369924 | ID=MS.gene57001.t1.exon3;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55369924 | 55370112 | 55369924 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55372205 | 55372414 | 55372205 | ID=MS.gene57001.t1.exon4;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55372205 | 55372414 | 55372205 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55372546 | 55372641 | 55372546 | ID=MS.gene57001.t1.exon5;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55372546 | 55372641 | 55372546 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55372867 | 55372965 | 55372867 | ID=MS.gene57001.t1.exon6;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55372867 | 55372965 | 55372867 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55373364 | 55373393 | 55373364 | ID=MS.gene57001.t1.exon7;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55373364 | 55373393 | 55373364 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55374685 | 55374738 | 55374685 | ID=MS.gene57001.t1.exon8;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55374685 | 55374738 | 55374685 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55375662 | 55375715 | 55375662 | ID=MS.gene57001.t1.exon9;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55375662 | 55375715 | 55375662 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55375798 | 55375875 | 55375798 | ID=MS.gene57001.t1.exon10;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55375798 | 55375875 | 55375798 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55375982 | 55376073 | 55375982 | ID=MS.gene57001.t1.exon11;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55375982 | 55376073 | 55375982 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55376152 | 55376209 | 55376152 | ID=MS.gene57001.t1.exon12;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55376152 | 55376209 | 55376152 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55376291 | 55376365 | 55376291 | ID=MS.gene57001.t1.exon13;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55376291 | 55376365 | 55376291 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55378430 | 55378477 | 55378430 | ID=MS.gene57001.t1.exon14;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55378430 | 55378477 | 55378430 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55379465 | 55379562 | 55379465 | ID=MS.gene57001.t1.exon15;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55379465 | 55379562 | 55379465 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55380358 | 55380433 | 55380358 | ID=MS.gene57001.t1.exon16;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55380358 | 55380433 | 55380358 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55380989 | 55381051 | 55380989 | ID=MS.gene57001.t1.exon17;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55380989 | 55381051 | 55380989 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55381138 | 55381229 | 55381138 | ID=MS.gene57001.t1.exon18;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55381138 | 55381229 | 55381138 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55381383 | 55381451 | 55381383 | ID=MS.gene57001.t1.exon19;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55381383 | 55381451 | 55381383 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55381538 | 55381601 | 55381538 | ID=MS.gene57001.t1.exon20;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55381538 | 55381601 | 55381538 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55381699 | 55381764 | 55381699 | ID=MS.gene57001.t1.exon21;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55381699 | 55381764 | 55381699 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| chr5.1 | exon | 55381940 | 55382017 | 55381940 | ID=MS.gene57001.t1.exon22;Parent=MS.gene57001.t1 |
| chr5.1 | CDS | 55381940 | 55382017 | 55381940 | ID=cds.MS.gene57001.t1;Parent=MS.gene57001.t1 |
| Gene Sequence |
| Protein sequence |
