AlfalfaGEDB | MS.gene95993

M. sativa cultivar XinJiangDaYe / MS.gene95993

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95993.t1	XP_013464451.1	89.8	451	46	0	1	451	1	451	4.20E-228	800.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95993.t1	Q9LUC4	29.7	448	268	11	13	445	26	441	1.6e-34	148.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95993.t1	A0A072VA50	89.8	451	46	0	1	451	1	451	3.0e-228	800.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene95993	0.841382	4.91E-58	-1.69E-46
MS.gene049151	MS.gene95993	0.801075	1.07E-48	-1.69E-46
MS.gene049153	MS.gene95993	0.837	6.73E-57	-1.69E-46
MS.gene049356	MS.gene95993	0.815489	9.01E-52	-1.69E-46
MS.gene049681	MS.gene95993	0.805019	1.63E-49	-1.69E-46
MS.gene049758	MS.gene95993	0.83967	1.38E-57	-1.69E-46
MS.gene049910	MS.gene95993	0.825856	3.73E-54	-1.69E-46
MS.gene050301	MS.gene95993	0.843984	1.00E-58	-1.69E-46
MS.gene050397	MS.gene95993	0.82116	4.68E-53	-1.69E-46
MS.gene050426	MS.gene95993	-0.807376	5.21E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007875	MS.gene95993	PPI
MS.gene007876	MS.gene95993	PPI
MS.gene032296	MS.gene95993	PPI
MS.gene038427	MS.gene95993	PPI
MS.gene043122	MS.gene95993	PPI
MS.gene043123	MS.gene95993	PPI
MS.gene053311	MS.gene95993	PPI
MS.gene053312	MS.gene95993	PPI
MS.gene053313	MS.gene95993	PPI
MS.gene055877	MS.gene95993	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95993.t1	MTR_2g072530	89.800	451	46	0	1	451	1	451	0.0	827
MS.gene95993.t1	MTR_2g072550	50.746	268	60	6	184	451	31	226	3.76e-67	214
MS.gene95993.t1	MTR_7g094030	34.513	452	263	13	12	446	27	462	1.19e-66	221
MS.gene95993.t1	MTR_2g082880	34.058	414	248	11	7	411	4	401	2.88e-62	208
MS.gene95993.t1	MTR_2g082800	35.516	397	242	9	3	398	17	400	1.47e-57	195
MS.gene95993.t1	MTR_2g072730	34.467	441	267	15	10	436	13	445	1.74e-56	194
MS.gene95993.t1	MTR_2g072720	33.262	466	274	15	2	446	28	477	4.55e-56	193
MS.gene95993.t1	MTR_2g082850	36.261	353	202	9	12	350	21	364	7.72e-55	187
MS.gene95993.t1	MTR_1g115250	31.473	448	266	12	2	437	21	439	1.70e-54	188
MS.gene95993.t1	MTR_4g032845	31.971	416	259	13	12	412	2	408	2.96e-50	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95993.t1	AT3G14710	29.054	444	276	10	13	445	26	441	6.21e-40	149
MS.gene95993.t1	AT4G26340	25.446	448	288	13	13	445	2	418	1.15e-21	97.1
MS.gene95993.t1	AT4G10400	24.944	445	286	13	13	446	2	409	7.11e-21	94.7
MS.gene95993.t1	AT4G10400	24.944	445	286	13	13	446	2	409	7.11e-21	94.7
MS.gene95993.t1	AT4G10400	24.944	445	286	13	13	446	2	409	7.11e-21	94.7
MS.gene95993.t1	AT3G59200	25.053	471	301	15	12	444	6	462	8.08e-20	92.4
MS.gene95993.t1	AT3G03030	25.694	432	282	14	13	411	2	427	1.02e-19	91.7
MS.gene95993.t1	AT2G42730	24.897	486	286	19	12	451	4	456	1.29e-19	91.3
MS.gene95993.t1	AT3G59200	27.100	369	231	10	12	353	6	363	1.77e-19	90.1
MS.gene95993.t1	AT2G26860	25.000	428	261	15	13	412	2	397	1.43e-18	87.8

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Find 54 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGTGTTAAGAAT+AGG	0.349193	2.4:+23670554	None:intergenic
AAACAAGAGTGTTAAGAATA+GGG	0.284563	2.4:+23670555	None:intergenic
AAACTAATGTTCTGTGTTGT+TGG	0.384561	2.4:+23671095	None:intergenic
AAAGGAACAGTTTGTGAATT+TGG	0.212569	2.4:-23671495	MS.gene95993:CDS
AACAAGAGTGTTAAGAATAG+GGG	0.527875	2.4:+23670556	None:intergenic
AACTTATCTGCAACTAAATG+AGG	0.518407	2.4:-23670615	MS.gene95993:CDS
AAGAGTACATTTCATTTGAA+GGG	0.524641	2.4:+23671265	None:intergenic
AAGCTTGACTGAAAGCAGTG+AGG	0.715060	2.4:+23670072	None:intergenic
ACTATCATCAAAATCAAGAT+TGG	0.463235	2.4:+23671547	None:intergenic
AGATGTCTTTACTTCTGCAA+CGG	0.610724	2.4:-23670097	MS.gene95993:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAATGTTCTGTGTTGT+TGG	+	chr2.4:23670461-23670480	None:intergenic	30.0%
AAAGGAACAGTTTGTGAATT+TGG	-	chr2.4:23670058-23670077	MS.gene95993:CDS	30.0%
AACTTATCTGCAACTAAATG+AGG	-	chr2.4:23670938-23670957	MS.gene95993:CDS	30.0%
ATGCTTCTAAGTTAAGTGAA+TGG	-	chr2.4:23670156-23670175	MS.gene95993:intron	30.0%
ATGGAAAACTTCTCAAGTAA+CGG	+	chr2.4:23670491-23670510	None:intergenic	30.0%
ATTTGAGAGACAAACAGATA+TGG	+	chr2.4:23670321-23670340	None:intergenic	30.0%
CTAACAGATTTCTCTTATGA+GGG	-	chr2.4:23670575-23670594	MS.gene95993:CDS	30.0%
GAGTCTATGAAAACAACTTA+AGG	+	chr2.4:23671215-23671234	None:intergenic	30.0%
TTAAGCAAAGTGAGAAACTT+TGG	+	chr2.4:23670121-23670140	None:intergenic	30.0%
TTGTTTGGTAAAATTCGTGT+TGG	-	chr2.4:23671549-23671568	MS.gene95993:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	23669849	23671726	23669849	ID=MS.gene95993
chr2.4	mRNA	23669849	23671726	23669849	ID=MS.gene95993.t1;Parent=MS.gene95993
chr2.4	exon	23670806	23671726	23670806	ID=MS.gene95993.t1.exon1;Parent=MS.gene95993.t1
chr2.4	CDS	23670806	23671726	23670806	ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1
chr2.4	exon	23670547	23670690	23670547	ID=MS.gene95993.t1.exon2;Parent=MS.gene95993.t1
chr2.4	CDS	23670547	23670690	23670547	ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1
chr2.4	exon	23669849	23670139	23669849	ID=MS.gene95993.t1.exon3;Parent=MS.gene95993.t1
chr2.4	CDS	23669849	23670139	23669849	ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1

Gene Sequence

>MS.gene95993

ATGGATTCACCAAGGGAAACAACAGTAGGAGAAAGAGATTTGATTAGCACATTACATGAAAGCATTCTTAGTCAGATCCTGTATTTCATTCCAATCGTAGACACGGTTAGCACTAGCGTCTTATCAAGAAGATGGATTGATGTTTGGAAATGCATAACCAATCTTGATTTTGATGATAGTTTGCTCGGTTCTAAGAAGAAAAAGATGCAAAAGGAACAGTTTGTGAATTTGGTTGAAAAAGTGCTTATTCACTTCACTAACTCGAGCATCCAAAGTTTCTCACTTTGCTTAACTAGTCATCAATATGATGCTTCTAAGTTAAGTGAATGGATTTGCTTTATCTTAGATAGGAGAGTTCAAAAGCTTCATATTCAGTATGCTGATAAAGTTTTCCTTCCTTCCAATTCACTTTTTCGCTGCAATTCTCTAGTCGAATTGACCCTTCAAATGAAATGTACTCTTAGTCTTCCCATATCTGTTTGTCTCTCAAATCTTAAAAAATTTAGCATATCTGGGATTAAATTAGTAAGTGATTCCTCCACTGATTCAAAAGATATAACTCTTAACTTCCCGATTCTCGAAGTGTTTGAAGCTAGAGGGTGCGAATGGCCAACAACACAGAACATTAGTTTACAAGTACCGTTACTTGAGAAGTTTTCCATAGCAATATGGAACCATCATTCAAATGAATCATGTAAATATGCCATTAAGGTTTATAGTCGATGCCTAACAGATTTCTCTTATGAGGGCGATCTTGAACAAGACATCGTTCTCTGTGATTCGTCATCAATTCGTAATGCTTCTATTGTGATTGTTGTTGATGAAGATAAAAAGGATAGAATGGAAAAACTTGAATTTCAAGCACGTAGTCTTCTCAAACAAATCGATAACGTGGAACAGCTAAAGTTATTGTTTTACAAGGTATGTTTTTTCTTTTACGATACATGAACGGAAATAGTTTTGTATGACAAAAACATGTTGTGATAATTGAAAAAAAAAATCGCAAAATTTTAATAAATTTTTCCTTGTCCTACAGGTTTTAAGGCATGGTAAAGATATTTTCACCAATCTGCCTGTCTTTGGAAGGTTAACTTATCTGCAACTAAATGAGGTCACTGGTGAAGCTTTGTTGCAATTACTCCACAATTCCCCTATTCTTAACACTCTTGTTTTACTTAATGTAAGTTTAGGTACTCTTGCCTTTTGTTCAAAGAAATTTAATGTCTTGTTAATGTGTTTAGTGTTGTTTAGATTGACATATTTGAGCTTATCTACTAGTATAAACACTTGTCAGACCTTCTTCAAAAAAATAAACACTTGTAAGACTTTTTGAGAGAGCTTATAGAAACAACTTATGACATGTCCTTAAGTTGTTTTCATAGACTCTCGAGGATAGTTTATGAAAACAACTTATAGCTTTTATGAAATCAGTTGGACTTAATTTATCTTTTATTATAAAAAATCCTTATACATAAGCAGTTATGTTATAAGCGCTTAATTAAGTTGTTTATCCAGAAAGGGTCTTCGTTGCATATATCATAAACTAATTTAAATGATAGAAAAACTCATGACACAAAAAAATTTCAGGGAGTTGCTGATTTAGACAAAGATGTCTTTACTTCTGCAACGGTGCCTCACTGCTTTCAGTCAAGCTTCAAAGTATTTCAGTTTAAAGGATTTAATGCGAACGAGCACGATCTTTGTTTGGTAAAATTCGTGTTGGCAGATGCAGCAATCATGGAGATGATGATGATATCGCCGGCTTTTTGGCTGCGATATGCAAATGTTGATTTGAAGAAAGTTAAGGAGCAGATACTCTCATTACCAAAGGTATCTAACAACTGCAAGATAGAATTTTCTGATATCAGTAGATCCTGA

Protein sequence

>MS.gene95993.t1

MDSPRETTVGERDLISTLHESILSQILYFIPIVDTVSTSVLSRRWIDVWKCITNLDFDDSLLGSKKKKMQKEQFVNLVEKVLIHFTNSSIQSFSLCLTSHQYDASKLSEWICFILDRRVQKLHIQYADKVFLPSNSLFRCNSLVELTLQMKCTLSLPISVCLSNLKKFSISGIKLVSDSSTDSKDITLNFPILEVFEARGCEWPTTQNISLQVPLLEKFSIAIWNHHSNESCKYAIKVYSRCLTDFSYEGDLEQDIVLCDSSSIRNASIVIVVDEDKKDRMEKLEFQARSLLKQIDNVEQLKLLFYKVLRHGKDIFTNLPVFGRLTYLQLNEVTGEALLQLLHNSPILNTLVLLNGVADLDKDVFTSATVPHCFQSSFKVFQFKGFNANEHDLCLVKFVLADAAIMEMMMISPAFWLRYANVDLKKVKEQILSLPKVSNNCKIEFSDISRS