AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95993


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95993.t1 MTR_2g072530 89.800 451 46 0 1 451 1 451 0.0 827
MS.gene95993.t1 MTR_2g072550 50.746 268 60 6 184 451 31 226 3.76e-67 214
MS.gene95993.t1 MTR_7g094030 34.513 452 263 13 12 446 27 462 1.19e-66 221
MS.gene95993.t1 MTR_2g082880 34.058 414 248 11 7 411 4 401 2.88e-62 208
MS.gene95993.t1 MTR_2g082800 35.516 397 242 9 3 398 17 400 1.47e-57 195
MS.gene95993.t1 MTR_2g072730 34.467 441 267 15 10 436 13 445 1.74e-56 194
MS.gene95993.t1 MTR_2g072720 33.262 466 274 15 2 446 28 477 4.55e-56 193
MS.gene95993.t1 MTR_2g082850 36.261 353 202 9 12 350 21 364 7.72e-55 187
MS.gene95993.t1 MTR_1g115250 31.473 448 266 12 2 437 21 439 1.70e-54 188
MS.gene95993.t1 MTR_4g032845 31.971 416 259 13 12 412 2 408 2.96e-50 177
MS.gene95993.t1 MTR_1g025870 33.086 405 236 16 44 430 116 503 1.80e-41 154
MS.gene95993.t1 MTR_2g082780 39.171 217 127 5 1 216 1 213 7.39e-40 142
MS.gene95993.t1 MTR_6g022350 27.468 466 260 15 11 409 4 458 5.78e-34 133
MS.gene95993.t1 MTR_2g067210 32.181 376 213 15 4 353 43 402 6.79e-33 130
MS.gene95993.t1 MTR_5g005700 27.426 474 295 14 11 446 30 492 2.36e-28 117
MS.gene95993.t1 MTR_4g080590 27.397 438 300 12 5 434 15 442 3.61e-28 116
MS.gene95993.t1 MTR_1g115245 31.203 266 161 7 5 261 18 270 1.80e-26 108
MS.gene95993.t1 MTR_7g023310 25.000 416 285 12 11 411 24 427 2.76e-25 108
MS.gene95993.t1 MTR_4g080787 25.322 466 294 14 13 445 19 463 4.65e-25 107
MS.gene95993.t1 MTR_8g006910 29.412 408 244 16 11 400 50 431 6.57e-25 107
MS.gene95993.t1 MTR_5g005690 23.305 472 307 10 18 444 26 487 2.49e-22 99.8
MS.gene95993.t1 MTR_3g048290 25.342 438 293 13 13 429 23 447 2.57e-22 99.8
MS.gene95993.t1 MTR_4g080773 25.404 433 272 13 13 411 19 434 3.72e-21 96.3
MS.gene95993.t1 MTR_4g080773 25.404 433 272 13 13 411 19 434 3.79e-21 96.3
MS.gene95993.t1 MTR_5g084070 23.476 443 296 11 13 443 13 424 1.89e-20 93.6
MS.gene95993.t1 MTR_4g081030 29.532 342 193 14 9 331 12 324 3.49e-20 92.4
MS.gene95993.t1 MTR_5g063450 30.496 282 155 11 12 283 26 276 3.76e-20 92.0
MS.gene95993.t1 MTR_5g007130 25.474 475 238 17 8 446 10 404 4.20e-19 89.4
MS.gene95993.t1 MTR_4g032730 23.340 497 291 19 5 445 4 466 5.44e-19 89.4
MS.gene95993.t1 MTR_4g080590 27.151 372 253 12 5 369 15 375 1.12e-17 84.7
MS.gene95993.t1 MTR_5g039950 24.083 436 271 14 12 434 22 410 3.28e-17 84.0
MS.gene95993.t1 MTR_3g018680 25.298 419 224 16 11 411 20 367 1.17e-16 82.0
MS.gene95993.t1 MTR_2g007450 21.748 469 282 14 7 447 10 421 1.72e-15 78.6
MS.gene95993.t1 MTR_0049s0110 24.356 427 257 18 13 416 8 391 2.65e-15 77.8
MS.gene95993.t1 MTR_8g062080 25.367 477 269 21 7 445 17 444 3.00e-15 77.8
MS.gene95993.t1 MTR_2g072710 29.012 162 98 4 291 447 46 195 4.58e-15 73.9
MS.gene95993.t1 MTR_1g013560 24.885 434 252 17 10 411 16 407 2.38e-14 75.1
MS.gene95993.t1 MTR_8g468810 23.871 465 297 19 12 445 24 462 2.52e-14 75.1
MS.gene95993.t1 MTR_8g467800 22.912 467 292 16 13 445 20 452 2.66e-14 75.1
MS.gene95993.t1 MTR_2g082860 40.594 101 53 3 3 97 17 116 5.61e-14 68.9
MS.gene95993.t1 MTR_7g094050 35.714 126 78 2 313 437 2 125 1.81e-13 67.4
MS.gene95993.t1 MTR_2g007400 23.707 464 246 20 13 443 12 400 2.42e-13 72.0
MS.gene95993.t1 MTR_2g091145 24.229 454 262 21 5 424 13 418 1.12e-12 70.1
MS.gene95993.t1 MTR_0049s0110 25.298 336 205 14 13 342 8 303 3.40e-12 67.8
MS.gene95993.t1 MTR_6g045333 22.993 461 272 20 3 445 50 445 3.77e-12 68.6
MS.gene95993.t1 MTR_1g013560 26.074 326 191 13 10 321 16 305 5.63e-12 67.4
MS.gene95993.t1 MTR_0049s0110 25.298 336 205 14 13 342 8 303 5.88e-12 67.0
MS.gene95993.t1 MTR_2g047858 26.744 172 121 3 13 179 115 286 6.86e-12 67.8
MS.gene95993.t1 MTR_2g007500 27.907 258 125 10 13 244 14 236 1.73e-11 65.9
MS.gene95993.t1 MTR_0049s0110 32.667 150 94 6 13 159 8 153 4.83e-11 63.5
MS.gene95993.t1 MTR_7g023330 23.981 417 238 16 9 411 15 366 6.12e-11 64.3
MS.gene95993.t1 MTR_5g080710 22.124 452 314 12 13 451 33 459 7.11e-11 64.3
MS.gene95993.t1 MTR_1g021825 23.126 467 282 21 7 447 11 426 7.70e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95993.t1 AT3G14710 29.054 444 276 10 13 445 26 441 6.21e-40 149
MS.gene95993.t1 AT4G26340 25.446 448 288 13 13 445 2 418 1.15e-21 97.1
MS.gene95993.t1 AT4G10400 24.944 445 286 13 13 446 2 409 7.11e-21 94.7
MS.gene95993.t1 AT4G10400 24.944 445 286 13 13 446 2 409 7.11e-21 94.7
MS.gene95993.t1 AT4G10400 24.944 445 286 13 13 446 2 409 7.11e-21 94.7
MS.gene95993.t1 AT3G59200 25.053 471 301 15 12 444 6 462 8.08e-20 92.4
MS.gene95993.t1 AT3G03030 25.694 432 282 14 13 411 2 427 1.02e-19 91.7
MS.gene95993.t1 AT2G42730 24.897 486 286 19 12 451 4 456 1.29e-19 91.3
MS.gene95993.t1 AT3G59200 27.100 369 231 10 12 353 6 363 1.77e-19 90.1
MS.gene95993.t1 AT2G26860 25.000 428 261 15 13 412 2 397 1.43e-18 87.8
MS.gene95993.t1 AT2G26860 25.000 428 261 15 13 412 2 397 1.43e-18 87.8
MS.gene95993.t1 AT3G03030 27.070 314 201 10 13 303 2 310 3.11e-18 85.9
MS.gene95993.t1 AT5G22730 25.272 459 297 18 10 443 26 463 4.41e-18 86.7
MS.gene95993.t1 AT5G22730 25.272 459 297 18 10 443 26 463 4.41e-18 86.7
MS.gene95993.t1 AT5G56560 24.045 445 290 14 15 445 7 417 1.20e-17 85.1
MS.gene95993.t1 AT5G38590 23.678 435 290 11 13 435 2 406 2.18e-17 84.3
MS.gene95993.t1 AT4G14096 26.796 362 228 11 10 353 5 347 2.27e-17 84.7
MS.gene95993.t1 AT4G14096 26.796 362 228 11 10 353 5 347 2.27e-17 84.7
MS.gene95993.t1 AT3G03040 24.516 465 288 17 13 438 2 442 3.63e-17 84.0
MS.gene95993.t1 AT5G56820 25.000 460 291 18 1 443 1 423 9.95e-17 82.4
MS.gene95993.t1 AT2G29930 25.773 485 290 21 3 445 2 458 1.23e-16 82.4
MS.gene95993.t1 AT2G29930 25.773 485 290 21 3 445 2 458 1.23e-16 82.4
MS.gene95993.t1 AT4G14103 25.978 358 241 12 10 352 5 353 1.60e-16 81.3
MS.gene95993.t1 AT4G14103 25.978 358 241 12 10 352 5 353 1.60e-16 81.3
MS.gene95993.t1 AT3G58930 24.896 482 299 17 13 445 2 469 1.94e-16 82.0
MS.gene95993.t1 AT3G58930 24.896 482 299 17 13 445 2 469 1.94e-16 82.0
MS.gene95993.t1 AT3G58930 24.896 482 299 17 13 445 2 469 1.94e-16 82.0
MS.gene95993.t1 AT4G14103 25.978 358 241 12 10 352 5 353 3.15e-16 80.9
MS.gene95993.t1 AT3G42770 26.609 466 263 23 15 444 1 423 5.27e-16 80.9
MS.gene95993.t1 AT4G09920 30.108 186 119 4 13 194 2 180 6.35e-16 78.6
MS.gene95993.t1 AT4G09920 30.108 186 119 4 13 194 2 180 6.35e-16 78.6
MS.gene95993.t1 AT4G09920 30.108 186 119 4 13 194 2 180 6.35e-16 78.6
MS.gene95993.t1 AT4G09920 30.108 186 119 4 13 194 2 180 7.16e-16 78.6
MS.gene95993.t1 AT4G09920 30.108 186 119 4 13 194 2 180 7.16e-16 78.6
MS.gene95993.t1 AT3G60040 26.577 444 261 17 1 404 1 419 2.33e-15 79.0
MS.gene95993.t1 AT3G60040 26.577 444 261 17 1 404 218 636 2.34e-15 79.0
MS.gene95993.t1 AT3G60040 26.577 444 261 17 1 404 220 638 2.45e-15 79.0
MS.gene95993.t1 AT2G26030 22.844 429 277 16 13 411 4 408 2.59e-15 78.2
MS.gene95993.t1 AT2G26030 22.844 429 277 16 13 411 4 408 2.59e-15 78.2
MS.gene95993.t1 AT2G26030 22.654 437 273 16 13 411 4 413 2.89e-15 78.2
MS.gene95993.t1 AT3G60040 26.577 444 261 17 1 404 221 639 2.97e-15 79.0
MS.gene95993.t1 AT3G58940 26.203 374 220 14 13 359 2 346 3.01e-15 78.6
MS.gene95993.t1 AT3G58940 26.203 374 220 14 13 359 2 346 3.01e-15 78.6
MS.gene95993.t1 AT3G60040 26.577 444 261 17 1 404 220 638 3.08e-15 79.0
MS.gene95993.t1 AT3G26922 25.541 231 160 5 13 240 14 235 3.49e-15 76.6
MS.gene95993.t1 AT3G26922 25.541 231 160 5 13 240 14 235 3.49e-15 76.6
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 10 365 4.14e-15 77.4
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 1 356 4.21e-15 77.4
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 1 356 4.21e-15 77.4
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 1 356 4.21e-15 77.4
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 1 356 4.21e-15 77.4
MS.gene95993.t1 AT3G59230 24.593 492 297 20 5 444 4 473 4.49e-15 77.8
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 5.32e-15 76.3
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 5.32e-15 76.3
MS.gene95993.t1 AT3G44060 24.661 442 298 13 18 444 4 425 5.33e-15 77.0
MS.gene95993.t1 AT1G06630 27.778 378 229 17 1 356 1 356 6.51e-15 77.0
MS.gene95993.t1 AT1G06630 27.346 373 229 16 1 353 1 351 7.53e-15 76.3
MS.gene95993.t1 AT1G06630 27.346 373 229 16 1 353 1 351 7.53e-15 76.3
MS.gene95993.t1 AT5G56380 23.684 456 308 15 13 446 2 439 8.48e-15 76.6
MS.gene95993.t1 AT5G56380 23.684 456 308 15 13 446 2 439 8.48e-15 76.6
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 9.02e-15 75.9
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 9.02e-15 75.9
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 9.02e-15 75.9
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 1 211 9.02e-15 75.9
MS.gene95993.t1 AT2G29910 28.444 225 141 7 9 227 25 235 1.06e-14 75.9
MS.gene95993.t1 AT1G55030 24.700 417 262 17 13 412 19 400 2.22e-14 75.1
MS.gene95993.t1 AT1G55030 25.000 408 254 17 13 403 9 381 2.55e-14 75.1
MS.gene95993.t1 AT5G56420 22.052 458 298 14 9 445 2 421 3.92e-14 74.3
MS.gene95993.t1 AT5G56420 22.052 458 298 14 9 445 2 421 3.92e-14 74.3
MS.gene95993.t1 AT5G56420 22.052 458 298 14 9 445 2 421 3.92e-14 74.3
MS.gene95993.t1 AT3G59240 26.078 464 297 18 12 444 7 455 4.81e-14 74.7
MS.gene95993.t1 AT3G59210 25.161 465 306 17 12 444 6 460 8.10e-14 73.9
MS.gene95993.t1 AT3G59210 25.161 465 306 17 12 444 6 460 8.10e-14 73.9
MS.gene95993.t1 AT3G59210 25.161 465 306 17 12 444 6 460 8.10e-14 73.9
MS.gene95993.t1 AT3G59210 25.161 465 306 17 12 444 6 460 8.10e-14 73.9
MS.gene95993.t1 AT3G59210 25.161 465 306 17 12 444 6 460 8.10e-14 73.9
MS.gene95993.t1 AT1G48400 27.826 230 147 7 12 230 9 230 1.18e-13 73.2
MS.gene95993.t1 AT1G48400 27.826 230 147 7 12 230 9 230 1.18e-13 73.2
MS.gene95993.t1 AT1G06630 28.814 236 152 9 1 226 1 230 1.62e-13 71.6
MS.gene95993.t1 AT1G69630 33.173 208 113 8 1 194 1 196 2.40e-13 72.0
MS.gene95993.t1 AT4G13965 23.133 415 270 11 5 403 2 383 2.82e-13 71.6
MS.gene95993.t1 AT3G58860 25.424 354 234 13 13 353 7 343 3.99e-13 71.6
MS.gene95993.t1 AT4G26350 29.310 174 109 5 13 180 2 167 4.23e-13 71.2
MS.gene95993.t1 AT4G00160 23.207 474 297 15 2 445 5 441 4.34e-13 71.2
MS.gene95993.t1 AT3G59190 30.769 130 82 3 10 133 9 136 4.92e-13 70.9
MS.gene95993.t1 AT4G27050 22.020 495 282 20 11 445 2 452 4.97e-13 71.2
MS.gene95993.t1 AT4G27050 22.020 495 282 20 11 445 2 452 4.97e-13 71.2
MS.gene95993.t1 AT4G27050 22.020 495 282 20 11 445 2 452 4.97e-13 71.2
MS.gene95993.t1 AT4G27050 22.020 495 282 20 11 445 2 452 4.97e-13 71.2
MS.gene95993.t1 AT4G27050 22.020 495 282 20 11 445 2 452 4.97e-13 71.2
MS.gene95993.t1 AT1G16930 21.842 467 312 14 6 443 4 446 5.22e-13 71.2
MS.gene95993.t1 AT1G16930 21.842 467 312 14 6 443 4 446 5.22e-13 71.2
MS.gene95993.t1 AT1G16930 21.842 467 312 14 6 443 4 446 5.22e-13 71.2
MS.gene95993.t1 AT3G59190 25.106 235 166 5 3 229 2 234 9.07e-13 70.5
MS.gene95993.t1 AT5G60610 26.056 426 249 17 13 412 2 387 9.41e-13 70.1
MS.gene95993.t1 AT5G60610 26.056 426 249 17 13 412 2 387 9.41e-13 70.1
MS.gene95993.t1 AT3G58900 25.610 410 257 17 13 385 2 400 1.14e-12 70.1
MS.gene95993.t1 AT3G52680 21.245 466 314 12 2 445 10 444 1.32e-12 69.7
MS.gene95993.t1 AT3G58880 25.069 363 244 13 13 357 3 355 1.46e-12 69.7
MS.gene95993.t1 AT1G78750 29.126 206 131 7 1 194 1 203 1.69e-12 69.7
MS.gene95993.t1 AT1G78750 29.126 206 131 7 1 194 1 203 1.69e-12 69.7
MS.gene95993.t1 AT1G78840 23.438 448 308 16 12 443 4 432 2.46e-12 68.9
MS.gene95993.t1 AT1G78840 23.438 448 308 16 12 443 4 432 2.46e-12 68.9
MS.gene95993.t1 AT4G13960 24.263 441 258 17 13 407 2 412 3.29e-12 68.6
MS.gene95993.t1 AT4G13960 24.263 441 258 17 13 407 2 412 3.29e-12 68.6
MS.gene95993.t1 AT1G66310 23.941 472 271 20 11 443 17 439 3.33e-12 68.6
MS.gene95993.t1 AT4G10410 29.762 168 106 3 31 197 5 161 4.62e-12 66.6
MS.gene95993.t1 AT5G38392 31.544 149 91 4 13 152 2 148 4.77e-12 65.9
MS.gene95993.t1 AT1G21990 23.779 471 308 18 12 445 8 464 6.60e-12 67.8
MS.gene95993.t1 AT5G38590 27.103 214 145 4 13 223 2 207 7.28e-12 66.2
MS.gene95993.t1 AT1G64540 26.744 344 194 15 12 346 4 298 7.45e-12 67.4
MS.gene95993.t1 AT1G64540 26.744 344 194 15 12 346 4 298 7.45e-12 67.4
MS.gene95993.t1 AT3G49030 24.454 458 293 18 11 448 19 443 7.70e-12 67.4
MS.gene95993.t1 AT1G58310 26.385 379 231 14 12 352 7 375 8.08e-12 67.4
MS.gene95993.t1 AT5G56690 24.181 397 261 14 15 392 4 379 8.47e-12 67.0
MS.gene95993.t1 AT4G13985 30.675 163 97 6 1 148 1 162 9.03e-12 67.4
MS.gene95993.t1 AT3G50710 20.961 458 300 16 13 443 2 424 1.38e-11 66.6
MS.gene95993.t1 AT3G49150 25.686 401 246 16 10 377 13 394 1.92e-11 66.2
MS.gene95993.t1 AT5G41830 27.374 179 109 3 1 158 1 179 2.27e-11 66.2
MS.gene95993.t1 AT5G22730 26.359 368 231 15 10 354 26 376 2.53e-11 65.5
MS.gene95993.t1 AT1G78760 22.965 479 273 21 10 443 13 440 4.01e-11 65.1
MS.gene95993.t1 AT5G56440 31.977 172 104 7 13 178 2 166 4.36e-11 65.1
MS.gene95993.t1 AT1G80470 22.075 453 318 13 3 443 5 434 4.55e-11 65.1
MS.gene95993.t1 AT3G49030 28.704 216 141 6 11 221 19 226 5.28e-11 64.7
MS.gene95993.t1 AT3G26922 22.816 206 148 4 29 232 1 197 5.41e-11 63.5
MS.gene95993.t1 AT3G26922 22.816 206 148 4 29 232 1 197 5.41e-11 63.5
MS.gene95993.t1 AT5G41630 28.177 181 113 6 10 175 9 187 6.52e-11 64.7
MS.gene95993.t1 AT3G58900 36.434 129 72 5 13 133 2 128 8.04e-11 63.5

Find 54 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAGTATTTCAGTTTAA+AGG 0.139696 2.4:-23670051 MS.gene95993:CDS
AAAGGAACAGTTTGTGAATT+TGG 0.212569 2.4:-23671495 MS.gene95993:CDS
AAACAAGAGTGTTAAGAATA+GGG 0.284563 2.4:+23670555 None:intergenic
ATCATGTAAATATGCCATTA+AGG 0.287357 2.4:-23671015 MS.gene95993:CDS
GCATCGACTATAAACCTTAA+TGG 0.306271 2.4:+23671001 None:intergenic
CAAGAAGATGGATTGATGTT+TGG 0.317460 2.4:-23671580 MS.gene95993:CDS
TGTTGTTGATGAAGATAAAA+AGG 0.327183 2.4:-23670892 MS.gene95993:CDS
TTCACCAATCTGCCTGTCTT+TGG 0.335476 2.4:-23670644 MS.gene95993:CDS
AAAACAAGAGTGTTAAGAAT+AGG 0.349193 2.4:+23670554 None:intergenic
ATTTGAGAGACAAACAGATA+TGG 0.372417 2.4:+23671235 None:intergenic
TCTCCTACTGTTGTTTCCCT+TGG 0.376624 2.4:+23671695 None:intergenic
AAACTAATGTTCTGTGTTGT+TGG 0.384561 2.4:+23671095 None:intergenic
CCTAACAGATTTCTCTTATG+AGG 0.392166 2.4:-23670979 MS.gene95993:CDS
TTAAGCAAAGTGAGAAACTT+TGG 0.394271 2.4:+23671435 None:intergenic
GAACGAGCACGATCTTTGTT+TGG 0.397360 2.4:-23670019 MS.gene95993:CDS
TACATGATTCATTTGAATGA+TGG 0.398273 2.4:+23671030 None:intergenic
TTGCAGTTGTTAGATACCTT+TGG 0.400531 2.4:+23669880 None:intergenic
GGATTTGCTTTATCTTAGAT+AGG 0.419517 2.4:-23671376 MS.gene95993:CDS
TGTTGATTTGAAGAAAGTTA+AGG 0.423111 2.4:-23669920 MS.gene95993:CDS
TGTTAAGAATAGGGGAATTG+TGG 0.424474 2.4:+23670564 None:intergenic
TAAGAGTACATTTCATTTGA+AGG 0.429355 2.4:+23671264 None:intergenic
CCTTCCAAAGACAGGCAGAT+TGG 0.430732 2.4:+23670640 None:intergenic
GCTTCAAACACTTCGAGAAT+CGG 0.436599 2.4:+23671134 None:intergenic
ATGCTTCTAAGTTAAGTGAA+TGG 0.451744 2.4:-23671397 MS.gene95993:CDS
CTTCAAACACTTCGAGAATC+GGG 0.453204 2.4:+23671135 None:intergenic
ACTATCATCAAAATCAAGAT+TGG 0.463235 2.4:+23671547 None:intergenic
GTTGGCAGATGCAGCAATCA+TGG 0.478397 2.4:-23669986 MS.gene95993:CDS
CTACGATTGGAATGAAATAC+AGG 0.479095 2.4:+23671627 None:intergenic
CTAGCGTCTTATCAAGAAGA+TGG 0.494487 2.4:-23671592 MS.gene95993:CDS
TTTGAGAGACAAACAGATAT+GGG 0.503543 2.4:+23671236 None:intergenic
TAAGTTAACCTTCCAAAGAC+AGG 0.506614 2.4:+23670632 None:intergenic
CCTCATAAGAGAAATCTGTT+AGG 0.515819 2.4:+23670979 None:intergenic
AACTTATCTGCAACTAAATG+AGG 0.518407 2.4:-23670615 MS.gene95993:CDS
GTGCTAACCGTGTCTACGAT+TGG 0.518461 2.4:+23671614 None:intergenic
CCAATCTGCCTGTCTTTGGA+AGG 0.521176 2.4:-23670640 MS.gene95993:CDS
AAGAGTACATTTCATTTGAA+GGG 0.524641 2.4:+23671265 None:intergenic
AACAAGAGTGTTAAGAATAG+GGG 0.527875 2.4:+23670556 None:intergenic
CTAACAGATTTCTCTTATGA+GGG 0.536932 2.4:-23670978 MS.gene95993:CDS
CTCGAAGTGTTTGAAGCTAG+AGG 0.540229 2.4:-23671128 MS.gene95993:CDS
GGAGATGATGATGATATCGC+CGG 0.568358 2.4:-23669965 MS.gene95993:CDS
CTGCAACTAAATGAGGTCAC+TGG 0.573768 2.4:-23670608 MS.gene95993:CDS
ATGATGGTTCCATATTGCTA+TGG 0.577377 2.4:+23671046 None:intergenic
ATGGAAAACTTCTCAAGTAA+CGG 0.587903 2.4:+23671065 None:intergenic
TCGAAGTGTTTGAAGCTAGA+GGG 0.587975 2.4:-23671127 MS.gene95993:CDS
TTGTTTGGTAAAATTCGTGT+TGG 0.601366 2.4:-23670004 MS.gene95993:CDS
AGATGTCTTTACTTCTGCAA+CGG 0.610724 2.4:-23670097 MS.gene95993:CDS
TTGAAGCTAGAGGGTGCGAA+TGG 0.623897 2.4:-23671118 MS.gene95993:CDS
TTTCATTCCAATCGTAGACA+CGG 0.627142 2.4:-23671621 MS.gene95993:CDS
GCAGATACTCTCATTACCAA+AGG 0.643815 2.4:-23669896 MS.gene95993:CDS
GGTAGTCATGGATTCACCAA+GGG 0.655137 2.4:-23671711 None:intergenic
TCACCAAGGGAAACAACAGT+AGG 0.661012 2.4:-23671698 MS.gene95993:CDS
TCTCAAACAAATCGATAACG+TGG 0.671900 2.4:-23670832 MS.gene95993:CDS
AGGTAGTCATGGATTCACCA+AGG 0.701421 2.4:-23671712 None:intergenic
AAGCTTGACTGAAAGCAGTG+AGG 0.715060 2.4:+23670072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTTCTTTGAACAAA+AGG + chr2.4:23671051-23671070 None:intergenic 15.0%
!! TTAAAAAATTTAGCATATCT+GGG - chr2.4:23670342-23670361 MS.gene95993:intron 15.0%
!! CTTAAAAAATTTAGCATATC+TGG - chr2.4:23670341-23670360 MS.gene95993:intron 20.0%
!!! AGTGTTTATTTTTTTGAAGA+AGG + chr2.4:23671147-23671166 None:intergenic 20.0%
!!! GTTTTACTTAATGTAAGTTT+AGG - chr2.4:23671017-23671036 MS.gene95993:CDS 20.0%
!!! TTCAAAGTATTTCAGTTTAA+AGG - chr2.4:23671502-23671521 MS.gene95993:CDS 20.0%
! AACATAACTGCTTATGTATA+AGG + chr2.4:23671315-23671334 None:intergenic 25.0%
! ACTATCATCAAAATCAAGAT+TGG + chr2.4:23670009-23670028 None:intergenic 25.0%
! ATCATGTAAATATGCCATTA+AGG - chr2.4:23670538-23670557 MS.gene95993:intron 25.0%
! CATGACACAAAAAAATTTCA+GGG - chr2.4:23671415-23671434 MS.gene95993:CDS 25.0%
! TAAGAAGAAAAAGATGCAAA+AGG - chr2.4:23670040-23670059 MS.gene95993:CDS 25.0%
! TACATGATTCATTTGAATGA+TGG + chr2.4:23670526-23670545 None:intergenic 25.0%
! TCATGACACAAAAAAATTTC+AGG - chr2.4:23671414-23671433 MS.gene95993:CDS 25.0%
! TGAAGATAAAAAGGATAGAA+TGG - chr2.4:23670670-23670689 MS.gene95993:CDS 25.0%
!! AAGAGTACATTTCATTTGAA+GGG + chr2.4:23670291-23670310 None:intergenic 25.0%
!! AGTTATATCTTTTGAATCAG+TGG + chr2.4:23670390-23670409 None:intergenic 25.0%
!! ATAGCTTTTATGAAATCAGT+TGG - chr2.4:23671261-23671280 MS.gene95993:CDS 25.0%
!! ATTAAGTTGTTTATCCAGAA+AGG - chr2.4:23671346-23671365 MS.gene95993:CDS 25.0%
!! TAAGAGTACATTTCATTTGA+AGG + chr2.4:23670292-23670311 None:intergenic 25.0%
!! TGTTGTTGATGAAGATAAAA+AGG - chr2.4:23670661-23670680 MS.gene95993:CDS 25.0%
!! TTAAGTTGTTTATCCAGAAA+GGG - chr2.4:23671347-23671366 MS.gene95993:CDS 25.0%
!! TTTCTTTTACGATACATGAA+CGG - chr2.4:23670778-23670797 MS.gene95993:intron 25.0%
!!! AAAACAAGAGTGTTAAGAAT+AGG + chr2.4:23671002-23671021 None:intergenic 25.0%
!!! AAACAAGAGTGTTAAGAATA+GGG + chr2.4:23671001-23671020 None:intergenic 25.0%
!!! GCTAAAGTTATTGTTTTACA+AGG - chr2.4:23670748-23670767 MS.gene95993:intron 25.0%
!!! TGTTGATTTGAAGAAAGTTA+AGG - chr2.4:23671633-23671652 MS.gene95993:CDS 25.0%
AAACTAATGTTCTGTGTTGT+TGG + chr2.4:23670461-23670480 None:intergenic 30.0%
AAAGGAACAGTTTGTGAATT+TGG - chr2.4:23670058-23670077 MS.gene95993:CDS 30.0%
AACTTATCTGCAACTAAATG+AGG - chr2.4:23670938-23670957 MS.gene95993:CDS 30.0%
ATGCTTCTAAGTTAAGTGAA+TGG - chr2.4:23670156-23670175 MS.gene95993:intron 30.0%
ATGGAAAACTTCTCAAGTAA+CGG + chr2.4:23670491-23670510 None:intergenic 30.0%
ATTTGAGAGACAAACAGATA+TGG + chr2.4:23670321-23670340 None:intergenic 30.0%
CTAACAGATTTCTCTTATGA+GGG - chr2.4:23670575-23670594 MS.gene95993:CDS 30.0%
GAGTCTATGAAAACAACTTA+AGG + chr2.4:23671215-23671234 None:intergenic 30.0%
TTAAGCAAAGTGAGAAACTT+TGG + chr2.4:23670121-23670140 None:intergenic 30.0%
TTGTTTGGTAAAATTCGTGT+TGG - chr2.4:23671549-23671568 MS.gene95993:CDS 30.0%
TTTGAGAGACAAACAGATAT+GGG + chr2.4:23670320-23670339 None:intergenic 30.0%
! AGAAGTTTTCCATAGCAATA+TGG - chr2.4:23670498-23670517 MS.gene95993:intron 30.0%
! GGATTTGCTTTATCTTAGAT+AGG - chr2.4:23670177-23670196 MS.gene95993:intron 30.0%
! TAAATTTTTCCTTGTCCTAC+AGG - chr2.4:23670863-23670882 MS.gene95993:CDS 30.0%
! TATATCTTTTGAATCAGTGG+AGG + chr2.4:23670387-23670406 None:intergenic 30.0%
!! AACAAGAGTGTTAAGAATAG+GGG + chr2.4:23671000-23671019 None:intergenic 30.0%
!!! GATTTTGATGATAGTTTGCT+CGG - chr2.4:23670014-23670033 MS.gene95993:CDS 30.0%
AGATGTCTTTACTTCTGCAA+CGG - chr2.4:23671456-23671475 MS.gene95993:CDS 35.0%
ATGATGGTTCCATATTGCTA+TGG + chr2.4:23670510-23670529 None:intergenic 35.0%
ATTGCAGCGAAAAAGTGAAT+TGG + chr2.4:23670252-23670271 None:intergenic 35.0%
CCTAACAGATTTCTCTTATG+AGG - chr2.4:23670574-23670593 MS.gene95993:CDS 35.0%
CCTCATAAGAGAAATCTGTT+AGG + chr2.4:23670577-23670596 None:intergenic 35.0%
CTACGATTGGAATGAAATAC+AGG + chr2.4:23669929-23669948 None:intergenic 35.0%
GAAAAAGTGAATTGGAAGGA+AGG + chr2.4:23670244-23670263 None:intergenic 35.0%
TAAGTTAACCTTCCAAAGAC+AGG + chr2.4:23670924-23670943 None:intergenic 35.0%
TCTCAAACAAATCGATAACG+TGG - chr2.4:23670721-23670740 MS.gene95993:intron 35.0%
TGTTAAGAATAGGGGAATTG+TGG + chr2.4:23670992-23671011 None:intergenic 35.0%
TTGCAGTTGTTAGATACCTT+TGG + chr2.4:23671676-23671695 None:intergenic 35.0%
TTTCATTCCAATCGTAGACA+CGG - chr2.4:23669932-23669951 MS.gene95993:CDS 35.0%
!! CAAGAAGATGGATTGATGTT+TGG - chr2.4:23669973-23669992 MS.gene95993:CDS 35.0%
!! GCATCGACTATAAACCTTAA+TGG + chr2.4:23670555-23670574 None:intergenic 35.0%
CAGCGAAAAAGTGAATTGGA+AGG + chr2.4:23670248-23670267 None:intergenic 40.0%
CTAGCGTCTTATCAAGAAGA+TGG - chr2.4:23669961-23669980 MS.gene95993:CDS 40.0%
CTTCAAACACTTCGAGAATC+GGG + chr2.4:23670421-23670440 None:intergenic 40.0%
GCAGATACTCTCATTACCAA+AGG - chr2.4:23671657-23671676 MS.gene95993:CDS 40.0%
GCTTCAAACACTTCGAGAAT+CGG + chr2.4:23670422-23670441 None:intergenic 40.0%
TACCATGCCTTAAAACCTGT+AGG + chr2.4:23670881-23670900 None:intergenic 40.0%
! TCCTTGTCCTACAGGTTTTA+AGG - chr2.4:23670871-23670890 MS.gene95993:CDS 40.0%
! TCGAAGTGTTTGAAGCTAGA+GGG - chr2.4:23670426-23670445 MS.gene95993:intron 40.0%
!! GTTGTTTTCATAGACTCTCG+AGG - chr2.4:23671218-23671237 MS.gene95993:CDS 40.0%
AAGCTTGACTGAAAGCAGTG+AGG + chr2.4:23671484-23671503 None:intergenic 45.0%
CTGCAACTAAATGAGGTCAC+TGG - chr2.4:23670945-23670964 MS.gene95993:CDS 45.0%
GAACGAGCACGATCTTTGTT+TGG - chr2.4:23671534-23671553 MS.gene95993:CDS 45.0%
GCCTTAAAACCTGTAGGACA+AGG + chr2.4:23670875-23670894 None:intergenic 45.0%
TATGCAACGAAGACCCTTTC+TGG + chr2.4:23671363-23671382 None:intergenic 45.0%
TCACCAAGGGAAACAACAGT+AGG - chr2.4:23669855-23669874 MS.gene95993:CDS 45.0%
TTCACCAATCTGCCTGTCTT+TGG - chr2.4:23670909-23670928 MS.gene95993:CDS 45.0%
! CTCGAAGTGTTTGAAGCTAG+AGG - chr2.4:23670425-23670444 MS.gene95993:intron 45.0%
! GGAGATGATGATGATATCGC+CGG - chr2.4:23671588-23671607 MS.gene95993:CDS 45.0%
!! TCTCCTACTGTTGTTTCCCT+TGG + chr2.4:23669861-23669880 None:intergenic 45.0%
!!! GTCCTACAGGTTTTAAGGCA+TGG - chr2.4:23670876-23670895 MS.gene95993:CDS 45.0%
!!! TGATGATATCGCCGGCTTTT+TGG - chr2.4:23671596-23671615 MS.gene95993:CDS 45.0%
CCAATCTGCCTGTCTTTGGA+AGG - chr2.4:23670913-23670932 MS.gene95993:CDS 50.0%
CCTTCCAAAGACAGGCAGAT+TGG + chr2.4:23670916-23670935 None:intergenic 50.0%
GCATATCGCAGCCAAAAAGC+CGG + chr2.4:23671610-23671629 None:intergenic 50.0%
GTGCTAACCGTGTCTACGAT+TGG + chr2.4:23669942-23669961 None:intergenic 50.0%
GTTGGCAGATGCAGCAATCA+TGG - chr2.4:23671567-23671586 MS.gene95993:CDS 50.0%
! TTGAAGCTAGAGGGTGCGAA+TGG - chr2.4:23670435-23670454 MS.gene95993:intron 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 23669849 23671726 23669849 ID=MS.gene95993
chr2.4 mRNA 23669849 23671726 23669849 ID=MS.gene95993.t1;Parent=MS.gene95993
chr2.4 exon 23670806 23671726 23670806 ID=MS.gene95993.t1.exon1;Parent=MS.gene95993.t1
chr2.4 CDS 23670806 23671726 23670806 ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1
chr2.4 exon 23670547 23670690 23670547 ID=MS.gene95993.t1.exon2;Parent=MS.gene95993.t1
chr2.4 CDS 23670547 23670690 23670547 ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1
chr2.4 exon 23669849 23670139 23669849 ID=MS.gene95993.t1.exon3;Parent=MS.gene95993.t1
chr2.4 CDS 23669849 23670139 23669849 ID=cds.MS.gene95993.t1;Parent=MS.gene95993.t1
Gene Sequence

>MS.gene95993

ATGGATTCACCAAGGGAAACAACAGTAGGAGAAAGAGATTTGATTAGCACATTACATGAAAGCATTCTTAGTCAGATCCTGTATTTCATTCCAATCGTAGACACGGTTAGCACTAGCGTCTTATCAAGAAGATGGATTGATGTTTGGAAATGCATAACCAATCTTGATTTTGATGATAGTTTGCTCGGTTCTAAGAAGAAAAAGATGCAAAAGGAACAGTTTGTGAATTTGGTTGAAAAAGTGCTTATTCACTTCACTAACTCGAGCATCCAAAGTTTCTCACTTTGCTTAACTAGTCATCAATATGATGCTTCTAAGTTAAGTGAATGGATTTGCTTTATCTTAGATAGGAGAGTTCAAAAGCTTCATATTCAGTATGCTGATAAAGTTTTCCTTCCTTCCAATTCACTTTTTCGCTGCAATTCTCTAGTCGAATTGACCCTTCAAATGAAATGTACTCTTAGTCTTCCCATATCTGTTTGTCTCTCAAATCTTAAAAAATTTAGCATATCTGGGATTAAATTAGTAAGTGATTCCTCCACTGATTCAAAAGATATAACTCTTAACTTCCCGATTCTCGAAGTGTTTGAAGCTAGAGGGTGCGAATGGCCAACAACACAGAACATTAGTTTACAAGTACCGTTACTTGAGAAGTTTTCCATAGCAATATGGAACCATCATTCAAATGAATCATGTAAATATGCCATTAAGGTTTATAGTCGATGCCTAACAGATTTCTCTTATGAGGGCGATCTTGAACAAGACATCGTTCTCTGTGATTCGTCATCAATTCGTAATGCTTCTATTGTGATTGTTGTTGATGAAGATAAAAAGGATAGAATGGAAAAACTTGAATTTCAAGCACGTAGTCTTCTCAAACAAATCGATAACGTGGAACAGCTAAAGTTATTGTTTTACAAGGTATGTTTTTTCTTTTACGATACATGAACGGAAATAGTTTTGTATGACAAAAACATGTTGTGATAATTGAAAAAAAAAATCGCAAAATTTTAATAAATTTTTCCTTGTCCTACAGGTTTTAAGGCATGGTAAAGATATTTTCACCAATCTGCCTGTCTTTGGAAGGTTAACTTATCTGCAACTAAATGAGGTCACTGGTGAAGCTTTGTTGCAATTACTCCACAATTCCCCTATTCTTAACACTCTTGTTTTACTTAATGTAAGTTTAGGTACTCTTGCCTTTTGTTCAAAGAAATTTAATGTCTTGTTAATGTGTTTAGTGTTGTTTAGATTGACATATTTGAGCTTATCTACTAGTATAAACACTTGTCAGACCTTCTTCAAAAAAATAAACACTTGTAAGACTTTTTGAGAGAGCTTATAGAAACAACTTATGACATGTCCTTAAGTTGTTTTCATAGACTCTCGAGGATAGTTTATGAAAACAACTTATAGCTTTTATGAAATCAGTTGGACTTAATTTATCTTTTATTATAAAAAATCCTTATACATAAGCAGTTATGTTATAAGCGCTTAATTAAGTTGTTTATCCAGAAAGGGTCTTCGTTGCATATATCATAAACTAATTTAAATGATAGAAAAACTCATGACACAAAAAAATTTCAGGGAGTTGCTGATTTAGACAAAGATGTCTTTACTTCTGCAACGGTGCCTCACTGCTTTCAGTCAAGCTTCAAAGTATTTCAGTTTAAAGGATTTAATGCGAACGAGCACGATCTTTGTTTGGTAAAATTCGTGTTGGCAGATGCAGCAATCATGGAGATGATGATGATATCGCCGGCTTTTTGGCTGCGATATGCAAATGTTGATTTGAAGAAAGTTAAGGAGCAGATACTCTCATTACCAAAGGTATCTAACAACTGCAAGATAGAATTTTCTGATATCAGTAGATCCTGA

Protein sequence

>MS.gene95993.t1

MDSPRETTVGERDLISTLHESILSQILYFIPIVDTVSTSVLSRRWIDVWKCITNLDFDDSLLGSKKKKMQKEQFVNLVEKVLIHFTNSSIQSFSLCLTSHQYDASKLSEWICFILDRRVQKLHIQYADKVFLPSNSLFRCNSLVELTLQMKCTLSLPISVCLSNLKKFSISGIKLVSDSSTDSKDITLNFPILEVFEARGCEWPTTQNISLQVPLLEKFSIAIWNHHSNESCKYAIKVYSRCLTDFSYEGDLEQDIVLCDSSSIRNASIVIVVDEDKKDRMEKLEFQARSLLKQIDNVEQLKLLFYKVLRHGKDIFTNLPVFGRLTYLQLNEVTGEALLQLLHNSPILNTLVLLNGVADLDKDVFTSATVPHCFQSSFKVFQFKGFNANEHDLCLVKFVLADAAIMEMMMISPAFWLRYANVDLKKVKEQILSLPKVSNNCKIEFSDISRS