AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51067


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51067.t1 MTR_4g071010 88.725 408 30 4 1 400 36 435 0.0 697
MS.gene51067.t1 MTR_4g071010 90.141 284 22 2 1 278 36 319 5.36e-169 482
MS.gene51067.t1 MTR_4g071010 90.141 284 22 2 1 278 36 319 6.61e-169 482
MS.gene51067.t1 MTR_4g071020 94.382 178 10 0 384 561 1 178 6.81e-115 338
MS.gene51067.t1 MTR_7g108865 59.429 175 65 4 386 555 1 174 3.73e-55 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51067.t1 AT2G38780 53.608 388 158 8 18 400 84 454 3.05e-131 391
MS.gene51067.t1 AT2G38780 54.082 392 150 9 18 400 88 458 6.71e-131 390
MS.gene51067.t1 AT2G38780 50.852 411 157 9 18 400 88 481 2.65e-126 379
MS.gene51067.t1 AT2G38780 55.088 285 116 5 18 298 84 360 1.31e-98 303
MS.gene51067.t1 AT2G38780 55.709 289 108 6 18 298 88 364 1.97e-98 303
MS.gene51067.t1 AT2G38780 56.098 287 106 6 18 296 88 362 3.86e-98 303
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 6.61e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 6.61e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 6.61e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 6.61e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 6.61e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 84 340 7.17e-83 263
MS.gene51067.t1 AT2G38780 52.453 265 114 5 18 278 88 344 1.09e-82 264
MS.gene51067.t1 AT4G02250 30.303 165 100 2 395 556 7 159 5.85e-16 75.9
MS.gene51067.t1 AT1G55770 35.052 97 60 1 463 556 79 175 2.21e-14 72.0

Find 117 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTCCTGGGTCCAAATT+TGG 0.160047 4.1:+31967305 None:intergenic
ACAATTCATGTACAGCTTTC+AGG 0.201984 4.1:-31969411 MS.gene51067:intron
TTATTAAACGCAAGCTTTAT+AGG 0.218801 4.1:+31972037 None:intergenic
CATTGCTGTTGCCGTTAATA+AGG 0.234346 4.1:-31967075 MS.gene51067:CDS
TGCACATACTTTGTTGATTA+GGG 0.234586 4.1:+31967481 None:intergenic
GATGATCGACGATCCAAATT+TGG 0.256060 4.1:-31967318 MS.gene51067:CDS
GCTGCTTACAAGAAGAAATA+TGG 0.267605 4.1:-31970641 MS.gene51067:CDS
GAAGGATGGTGACTTCTTAA+TGG 0.279378 4.1:-31970273 MS.gene51067:CDS
TTGCACATACTTTGTTGATT+AGG 0.299412 4.1:+31967480 None:intergenic
GCCAAACCTTGTTGAATTCC+TGG 0.321141 4.1:+31967293 None:intergenic
CGGTGCTGATGGAGGGAAAA+AGG 0.321282 4.1:-31971957 MS.gene51067:CDS
ACACCCCATGTAGAAACTTT+TGG 0.326916 4.1:+31970890 None:intergenic
GATTAAATCAAACTCTGGTT+TGG 0.332351 4.1:-31971993 MS.gene51067:CDS
CCTTGACCTGTTCAGTTTGG+AGG 0.348105 4.1:-31970746 MS.gene51067:intron
GTCAATGACTTTCTCATAGT+AGG 0.348199 4.1:+31970223 None:intergenic
TTTAGAGAGTGAAGAAGAAA+AGG 0.358296 4.1:-31970696 MS.gene51067:CDS
CCTGAGGTGGAGCTTATTAT+CGG 0.363802 4.1:-31970992 MS.gene51067:CDS
TCATCATCCTTAGTCTGTTC+AGG 0.364395 4.1:+31970929 None:intergenic
TGATTGCAAGGAGACTTTAT+TGG 0.364633 4.1:-31967270 MS.gene51067:CDS
TCTGAGAAGGAGTCTGAAAA+AGG 0.367037 4.1:+31971025 None:intergenic
TTGAGCCACTTCATCTTTAA+CGG 0.367047 4.1:+31968241 None:intergenic
ATTAAATCAAACTCTGGTTT+GGG 0.367973 4.1:-31971992 MS.gene51067:CDS
AACACACATTGTTCCTTGTT+AGG 0.371328 4.1:+31967452 None:intergenic
CCAAACGTGATGCTCAATTA+TGG 0.371905 4.1:-31967199 MS.gene51067:CDS
ATTATGGTTGCAAGCAGCTT+TGG 0.380601 4.1:-31967183 MS.gene51067:CDS
CCCAGGAATTCAACAAGGTT+TGG 0.387218 4.1:-31967294 MS.gene51067:CDS
TGAGCCACTTCATCTTTAAC+GGG 0.391252 4.1:+31968242 None:intergenic
TTCTTGCCTACTTTAACACT+TGG 0.395553 4.1:+31969440 None:intergenic
AAGGAGGGAGTGAGAGTACT+TGG 0.407449 4.1:-31971171 MS.gene51067:CDS
AGAATTGTCTGTTTCAAAGA+TGG 0.414379 4.1:-31971110 MS.gene51067:CDS
ATGTGTGTTGGTCCTTTCTT+CGG 0.414944 4.1:-31967438 MS.gene51067:CDS
CATTGACAAATTACCCTTCA+AGG 0.416440 4.1:-31970207 MS.gene51067:intron
ATCTGTCATAGCCTTATTAA+CGG 0.417652 4.1:+31967064 None:intergenic
ATTTAGAAGTTTACCTTGAA+GGG 0.427228 4.1:+31970194 None:intergenic
TTTGAAATATTGTTAGGTCT+AGG 0.441867 4.1:+31970863 None:intergenic
ATAATATTTATAGGCATTGA+AGG 0.443328 4.1:-31970291 MS.gene51067:intron
CCATAATTGAGCATCACGTT+TGG 0.443848 4.1:+31967199 None:intergenic
CACAAAATACTTATCTCTCT+TGG 0.446702 4.1:-31967555 MS.gene51067:CDS
TCCTTAGTCTGTTCAGGCTG+TGG 0.450969 4.1:+31970935 None:intergenic
ATTGCGATCTTCACAGAAAC+CGG 0.455646 4.1:+31971929 None:intergenic
TGACAATAGTGTTGGTAAGA+AGG 0.457261 4.1:-31971134 MS.gene51067:CDS
AATTTAGAAGTTTACCTTGA+AGG 0.460312 4.1:+31970193 None:intergenic
GGCTCACTTTGTCCGAAGAA+AGG 0.464221 4.1:+31967426 None:intergenic
AAGGGGATTGCCACCTGGAC+TGG 0.466766 4.1:-31971050 MS.gene51067:CDS
TGACCTGTTCAGTTTGGAGG+TGG 0.468485 4.1:-31970743 MS.gene51067:intron
TCAAGAAAGTGAAATCAATC+AGG 0.474812 4.1:-31968222 MS.gene51067:CDS
CCAAACCTTGTTGAATTCCT+GGG 0.480592 4.1:+31967294 None:intergenic
TCCACAGCCTGAACAGACTA+AGG 0.482156 4.1:-31970936 MS.gene51067:CDS
GACAATAGTGTTGGTAAGAA+GGG 0.482595 4.1:-31971133 MS.gene51067:CDS
TCAATGACTTTCTCATAGTA+GGG 0.487497 4.1:+31970224 None:intergenic
CTTGGTGGTTTAATAAAATG+AGG 0.494739 4.1:+31967525 None:intergenic
GGTGGAAGAACTATACGTCC+TGG 0.503929 4.1:-31970725 MS.gene51067:CDS
TGACTTGTGCAAAGGTAACT+TGG 0.504835 4.1:+31967507 None:intergenic
ACCTGGCTATGATATCACTA+AGG 0.507932 4.1:-31967385 MS.gene51067:CDS
ACAAGGTTTGGCTGATTGCA+AGG 0.508120 4.1:-31967282 MS.gene51067:CDS
TCTGTTAGTGAAACTGATCA+AGG 0.516186 4.1:-31971869 MS.gene51067:intron
AGGAGGGAGTGAGAGTACTT+GGG 0.519057 4.1:-31971170 MS.gene51067:CDS
TCTTGCCTACTTTAACACTT+GGG 0.521824 4.1:+31969441 None:intergenic
GAATCGATTAAATCAAACTC+TGG 0.521956 4.1:-31971998 MS.gene51067:CDS
ATTGAGCAAAACGGTGCTGA+TGG 0.524701 4.1:-31971968 MS.gene51067:CDS
TATTTATAGGCATTGAAGGA+TGG 0.534214 4.1:-31970287 MS.gene51067:intron
AAAGTATAAGCAGAATAAAG+AGG 0.535033 4.1:-31971894 MS.gene51067:CDS
ACAAGCCAAAAGTTTCTACA+TGG 0.538624 4.1:-31970895 MS.gene51067:CDS
CCGATAATAAGCTCCACCTC+AGG 0.545209 4.1:+31970992 None:intergenic
TCTCACCCAAGTGTTAAAGT+AGG 0.553096 4.1:-31969446 MS.gene51067:CDS
GTGGAAGAACTATACGTCCT+GGG 0.553555 4.1:-31970724 MS.gene51067:CDS
TGGCCGCTTCAAACGCGACC+GGG 0.557203 4.1:-31967361 MS.gene51067:CDS
GTGGCCGCTTCAAACGCGAC+CGG 0.557441 4.1:-31967362 MS.gene51067:CDS
CTACCCCGTTAAAGATGAAG+TGG 0.559497 4.1:-31968246 MS.gene51067:CDS
ACATGTGATGCTTCAATACC+TGG 0.560104 4.1:-31967149 MS.gene51067:CDS
CCCTTAGTGATATCATAGCC+AGG 0.560549 4.1:+31967384 None:intergenic
TGTGAAGATCGCAATGGAGA+AGG 0.561367 4.1:-31971921 MS.gene51067:CDS
TAAATGCATCAAAATAACTC+TGG 0.561561 4.1:+31968285 None:intergenic
GCAGGCTATGGAAATGATGA+AGG 0.561630 4.1:-31968348 MS.gene51067:intron
CTGCCACAGTATCCTCAAGC+TGG 0.563269 4.1:+31967237 None:intergenic
AAGACAAGGGGATTGCCACC+TGG 0.574035 4.1:-31971055 MS.gene51067:CDS
AGGCAAGTCATCGTCTGAGA+AGG 0.577048 4.1:+31971012 None:intergenic
AGACGATGACTTGCCTGAGG+TGG 0.579966 4.1:-31971005 MS.gene51067:CDS
AATGGACGCGGGAAAACTGA+AGG 0.586192 4.1:-31970255 MS.gene51067:CDS
AGCAAAACGGTGCTGATGGA+GGG 0.586859 4.1:-31971964 MS.gene51067:CDS
GGAGGGAGTGAGAGTACTTG+GGG 0.587353 4.1:-31971169 MS.gene51067:CDS
GAGCAAAACGGTGCTGATGG+AGG 0.587753 4.1:-31971965 MS.gene51067:CDS
TGGTGACTTCTTAATGGACG+CGG 0.588889 4.1:-31970267 MS.gene51067:CDS
TCACTCTCTAAAATCTCCCC+AGG 0.590984 4.1:+31970707 None:intergenic
ATGTGCAAACTTGCCTAACA+AGG 0.593346 4.1:-31967465 MS.gene51067:CDS
GCACATACTTTGTTGATTAG+GGG 0.593542 4.1:+31967482 None:intergenic
TAGGGGATTGACTTGTGCAA+AGG 0.596697 4.1:+31967499 None:intergenic
CTTGTGCAAAGGTAACTTGG+TGG 0.598194 4.1:+31967510 None:intergenic
TCGGACAATAAGAAGACAAG+GGG 0.602369 4.1:-31971067 MS.gene51067:CDS
GACGATCCAAATTTGGACCC+AGG 0.607875 4.1:-31967311 MS.gene51067:CDS
AATGTGAATGACAATAGTGT+TGG 0.608670 4.1:-31971142 MS.gene51067:CDS
CTTTGCAAACATACCTACTG+AGG 0.611061 4.1:+31969855 None:intergenic
TTTGTCAAGACTCCCTCAGT+AGG 0.612816 4.1:-31969868 MS.gene51067:intron
TTTCACATCGGATAGTATCC+CGG 0.613806 4.1:+31967343 None:intergenic
CAAGCCAAAAGTTTCTACAT+GGG 0.621826 4.1:-31970894 MS.gene51067:CDS
TATCCCGGTCGCGTTTGAAG+CGG 0.622386 4.1:+31967358 None:intergenic
CCTGGCTATGATATCACTAA+GGG 0.625300 4.1:-31967384 MS.gene51067:CDS
TTTCGGACAATAAGAAGACA+AGG 0.625969 4.1:-31971069 MS.gene51067:CDS
GGATGCAGAAAGCCAGCTTG+AGG 0.627877 4.1:-31967249 MS.gene51067:CDS
CTCAGACGATGACTTGCCTG+AGG 0.631457 4.1:-31971008 MS.gene51067:CDS
GGTTTGGGAATTGAGCAAAA+CGG 0.633600 4.1:-31971977 MS.gene51067:CDS
GCCCTGCAGAGTGAGCTACA+TGG 0.636806 4.1:-31969914 MS.gene51067:intron
GAGAGAACATCATCATCACC+AGG 0.641144 4.1:+31967131 None:intergenic
GGTGACTTCTTAATGGACGC+GGG 0.642391 4.1:-31970266 MS.gene51067:CDS
ATGGATTAGCTGCTTTACAG+TGG 0.643271 4.1:-31969895 MS.gene51067:CDS
GGCTATGATATCACTAAGGG+TGG 0.644684 4.1:-31967381 MS.gene51067:CDS
TTGGACCCAGGAATTCAACA+AGG 0.653837 4.1:-31967299 MS.gene51067:CDS
TTCGGACAATAAGAAGACAA+GGG 0.664199 4.1:-31971068 MS.gene51067:CDS
TGGAAGAACTATACGTCCTG+GGG 0.672309 4.1:-31970723 MS.gene51067:CDS
AAGCCAAAAGTTTCTACATG+GGG 0.672588 4.1:-31970893 MS.gene51067:CDS
ACAAGCGACTCTAAAAGACC+TGG 0.672920 4.1:-31967402 MS.gene51067:CDS
TTTGCAAACATACCTACTGA+GGG 0.676039 4.1:+31969856 None:intergenic
TAACAAGGAACAATGTGTGT+TGG 0.683179 4.1:-31967450 MS.gene51067:CDS
GGTTTCTGTGAAGATCGCAA+TGG 0.683254 4.1:-31971927 MS.gene51067:CDS
AAGCCAGCTTGAGGATACTG+TGG 0.683517 4.1:-31967240 MS.gene51067:CDS
GAGCCACTTCATCTTTAACG+GGG 0.710162 4.1:+31968243 None:intergenic
TATGAACCAAGAAAACAACA+AGG 0.765280 4.1:-31972095 MS.gene51067:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATAAATAATAGGAT+AGG + chr4.1:31969470-31969489 None:intergenic 10.0%
!! GAAAAATATTTATTTACAAA+TGG - chr4.1:31970393-31970412 MS.gene51067:intron 10.0%
!! GAATTGTATATAATATTTAT+AGG - chr4.1:31968843-31968862 MS.gene51067:intron 10.0%
!!! AAAATTAGAGTATTAATTTA+GGG + chr4.1:31971393-31971412 None:intergenic 10.0%
!!! TAAAATTAGAGTATTAATTT+AGG + chr4.1:31971394-31971413 None:intergenic 10.0%
!! AAATAGAATGAAATAATCAT+TGG - chr4.1:31970154-31970173 MS.gene51067:intron 15.0%
!! CATTAACAATTAAAAAGAAA+TGG + chr4.1:31971057-31971076 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr4.1:31970281-31970300 MS.gene51067:CDS 15.0%
!! GATATTTATATGTATATAGT+AGG - chr4.1:31971162-31971181 MS.gene51067:CDS 15.0%
!! TATTATTTGCAAAGTAAAAT+TGG + chr4.1:31970547-31970566 None:intergenic 15.0%
!! TCATTACAAAATAAATGTAA+CGG - chr4.1:31970063-31970082 MS.gene51067:intron 15.0%
!! TCTATAGTATTATTAAATAG+CGG + chr4.1:31967586-31967605 None:intergenic 15.0%
!!! AAACTATGAAATTTTTAGAA+AGG - chr4.1:31970573-31970592 MS.gene51067:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr4.1:31970321-31970340 MS.gene51067:intron 15.0%
!!! CTAAAAAATGCTTTAAAAAA+GGG + chr4.1:31969085-31969104 None:intergenic 15.0%
!!! TATAAACATTGATAATGAAA+AGG - chr4.1:31967887-31967906 MS.gene51067:intron 15.0%
!!! TTTTACTTTGCAAATAATAA+TGG - chr4.1:31970548-31970567 MS.gene51067:intron 15.0%
!! AAACTAGGAAAACATATATA+TGG - chr4.1:31969165-31969184 MS.gene51067:intron 20.0%
!! ACAACTTAATAGATATGTAT+AGG - chr4.1:31971121-31971140 MS.gene51067:CDS 20.0%
!! ATTCATGAAATAAATCATGT+TGG + chr4.1:31968827-31968846 None:intergenic 20.0%
!! TAGGTATAGATAATATAGTT+AGG + chr4.1:31969451-31969470 None:intergenic 20.0%
!! TCATCAAATCAAAATATGTT+TGG + chr4.1:31969633-31969652 None:intergenic 20.0%
!! TTATATGTATATAGTAGGAT+AGG - chr4.1:31971167-31971186 MS.gene51067:CDS 20.0%
!! TTATTATAAAACGAAGTCAT+TGG - chr4.1:31967691-31967710 MS.gene51067:intron 20.0%
!! TTCATGAAATAAATCATGTT+GGG + chr4.1:31968826-31968845 None:intergenic 20.0%
!! TTTGTTTATAAACTATTGTG+AGG + chr4.1:31971505-31971524 None:intergenic 20.0%
!!! AATAAGACCATACTTATTTT+GGG + chr4.1:31967652-31967671 None:intergenic 20.0%
!!! AATTTATTTTTAGGATTGCA+AGG - chr4.1:31967953-31967972 MS.gene51067:intron 20.0%
!!! ACTCATTACTTTTCTATTTT+TGG + chr4.1:31971347-31971366 None:intergenic 20.0%
!!! ACTGTTTTTGAAATATTGTT+AGG + chr4.1:31968289-31968308 None:intergenic 20.0%
!!! ATAATATTTATAGGCATTGA+AGG - chr4.1:31968852-31968871 MS.gene51067:intron 20.0%
!!! ATTCTAAAAAATACTTCATG+TGG - chr4.1:31971309-31971328 MS.gene51067:intron 20.0%
!!! GCTAAAAAATGCTTTAAAAA+AGG + chr4.1:31969086-31969105 None:intergenic 20.0%
!!! TAATAAGACCATACTTATTT+TGG + chr4.1:31967653-31967672 None:intergenic 20.0%
!!! TACTTTTAACACTCTTTAAA+AGG + chr4.1:31970423-31970442 None:intergenic 20.0%
!!! TATGAAAGTATTGAATTCAA+AGG + chr4.1:31970484-31970503 None:intergenic 20.0%
!!! TCATCAAACTTTTTTATTTG+TGG - chr4.1:31969916-31969935 MS.gene51067:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr4.1:31970203-31970222 None:intergenic 20.0%
!!! TTTATTCTGCTTATACTTTT+TGG + chr4.1:31967248-31967267 None:intergenic 20.0%
! AAAGTATAAGCAGAATAAAG+AGG - chr4.1:31967249-31967268 MS.gene51067:CDS 25.0%
! AAGTGCTTAATTAATGTGTT+AGG - chr4.1:31967448-31967467 MS.gene51067:CDS 25.0%
! AATATTCCACAGTAACATTA+TGG - chr4.1:31969839-31969858 MS.gene51067:intron 25.0%
! AATTTAGAAGTTTACCTTGA+AGG + chr4.1:31968953-31968972 None:intergenic 25.0%
! ACAAAGAGATTGAATATATC+CGG - chr4.1:31971093-31971112 MS.gene51067:CDS 25.0%
! ACAAGCTTTCATGTAAAAAA+TGG + chr4.1:31970507-31970526 None:intergenic 25.0%
! AGAAGTAGTACAACAAAAAT+AGG + chr4.1:31970976-31970995 None:intergenic 25.0%
! AGCAAAGAAAATCATTACTA+CGG + chr4.1:31970694-31970713 None:intergenic 25.0%
! AGGGTTAAATTGTTTGTAAT+TGG + chr4.1:31971471-31971490 None:intergenic 25.0%
! ATTATGTACAAGATGTTTAG+AGG - chr4.1:31968970-31968989 MS.gene51067:intron 25.0%
! ATTTAGAAGTTTACCTTGAA+GGG + chr4.1:31968952-31968971 None:intergenic 25.0%
! GCTTATAGAAAATATGCTTA+TGG - chr4.1:31967532-31967551 MS.gene51067:CDS 25.0%
! GGTAAACATATCATATCTAT+TGG - chr4.1:31968564-31968583 MS.gene51067:intron 25.0%
! TAAAAAGAAATGGTACACTT+AGG + chr4.1:31971047-31971066 None:intergenic 25.0%
! TAAATGCATCAAAATAACTC+TGG + chr4.1:31970861-31970880 None:intergenic 25.0%
! TAATCAAAGACATCAACTAA+TGG + chr4.1:31967736-31967755 None:intergenic 25.0%
! TATGACATAAGATTGGAATT+TGG - chr4.1:31971191-31971210 MS.gene51067:intron 25.0%
! TCAACATAGAAGAAAAAGAA+TGG - chr4.1:31971561-31971580 MS.gene51067:intron 25.0%
! TGCAAAGTAAAATTGGATAA+TGG + chr4.1:31970540-31970559 None:intergenic 25.0%
! TTGCAATATTTGTTTGCATA+TGG - chr4.1:31968644-31968663 MS.gene51067:intron 25.0%
!! AAAGGATGGTAAGAATATTT+TGG + chr4.1:31968594-31968613 None:intergenic 25.0%
!! AAGGATGGTAAGAATATTTT+GGG + chr4.1:31968593-31968612 None:intergenic 25.0%
!! ATCTATTAAGTTGTTCAAAC+CGG + chr4.1:31971115-31971134 None:intergenic 25.0%
!! ATTAAATCAAACTCTGGTTT+GGG - chr4.1:31967151-31967170 MS.gene51067:CDS 25.0%
!! GGTGTTTTGCTTATTATTTA+TGG - chr4.1:31969577-31969596 MS.gene51067:intron 25.0%
!! TTAATTTTACAGTGTAATGC+AGG + chr4.1:31969987-31970006 None:intergenic 25.0%
!! TTATTAAACGCAAGCTTTAT+AGG + chr4.1:31967109-31967128 None:intergenic 25.0%
!! TTTGAAATATTGTTAGGTCT+AGG + chr4.1:31968283-31968302 None:intergenic 25.0%
!!! ATTTTGATTTGATGATTGAC+AGG - chr4.1:31969638-31969657 MS.gene51067:intron 25.0%
!!! TTCTATTTTTGGCAAAACTA+GGG + chr4.1:31971336-31971355 None:intergenic 25.0%
!!! TTCTTAACTTGTTGAAATGA+AGG - chr4.1:31968745-31968764 MS.gene51067:intron 25.0%
!!! TTTCTATTTTTGGCAAAACT+AGG + chr4.1:31971337-31971356 None:intergenic 25.0%
AAATTGTGTGAGAGAAAAGT+TGG - chr4.1:31970241-31970260 MS.gene51067:CDS 30.0%
AAGGAAAGGGTAAATTTGAA+AGG + chr4.1:31968377-31968396 None:intergenic 30.0%
AATGTGAATGACAATAGTGT+TGG - chr4.1:31968001-31968020 MS.gene51067:intron 30.0%
ACAAAGCTAGATCGAAATAT+AGG + chr4.1:31970628-31970647 None:intergenic 30.0%
ACATAAGATTGGAATTTGGA+TGG - chr4.1:31971195-31971214 MS.gene51067:intron 30.0%
AGAATTGTCTGTTTCAAAGA+TGG - chr4.1:31968033-31968052 MS.gene51067:intron 30.0%
AGTCTATGTAGAACATAACA+TGG + chr4.1:31969347-31969366 None:intergenic 30.0%
ATGTAGTGTATCATTAGCAA+TGG - chr4.1:31968712-31968731 MS.gene51067:intron 30.0%
ATTGTTAATGATCAAGTCCT+TGG - chr4.1:31971067-31971086 MS.gene51067:CDS 30.0%
CACAAAATACTTATCTCTCT+TGG - chr4.1:31971588-31971607 MS.gene51067:intron 30.0%
CATATATATGGAGGATTTAG+AGG - chr4.1:31969177-31969196 MS.gene51067:intron 30.0%
CATTGAACTCAATAAAGACA+GGG + chr4.1:31969787-31969806 None:intergenic 30.0%
CCAACTAATACAAACCAAAA+GGG - chr4.1:31969048-31969067 MS.gene51067:intron 30.0%
CTAGGAAAACATATATATGG+AGG - chr4.1:31969168-31969187 MS.gene51067:intron 30.0%
GAAAAAACACGCTAAAAAGA+AGG + chr4.1:31968617-31968636 None:intergenic 30.0%
GAATCGATTAAATCAAACTC+TGG - chr4.1:31967145-31967164 MS.gene51067:CDS 30.0%
GATAGGATATGACATAAGAT+TGG - chr4.1:31971184-31971203 MS.gene51067:intron 30.0%
GATTAAATCAAACTCTGGTT+TGG - chr4.1:31967150-31967169 MS.gene51067:CDS 30.0%
GTAACCATCCAATAAAATTG+AGG - chr4.1:31971431-31971450 MS.gene51067:intron 30.0%
TCAAGAAAGTGAAATCAATC+AGG - chr4.1:31970921-31970940 MS.gene51067:CDS 30.0%
TCAATGACTTTCTCATAGTA+GGG + chr4.1:31968922-31968941 None:intergenic 30.0%
TCATTGAACTCAATAAAGAC+AGG + chr4.1:31969788-31969807 None:intergenic 30.0%
TGAAACAAAGTTTAAGCACA+AGG + chr4.1:31970669-31970688 None:intergenic 30.0%
TGATGAGTATATGCACTAAT+AGG + chr4.1:31969902-31969921 None:intergenic 30.0%
TTAAGCACCCAAAATAAGTA+TGG - chr4.1:31967642-31967661 MS.gene51067:intron 30.0%
TTTAGAGAGTGAAGAAGAAA+AGG - chr4.1:31968447-31968466 MS.gene51067:intron 30.0%
! CTTGGTGGTTTAATAAAATG+AGG + chr4.1:31971621-31971640 None:intergenic 30.0%
! TAGCATAAGCAAAGTACTTA+TGG + chr4.1:31967427-31967446 None:intergenic 30.0%
! TGCACATACTTTGTTGATTA+GGG + chr4.1:31971665-31971684 None:intergenic 30.0%
! TTGACCTCAATTTTATTGGA+TGG + chr4.1:31971438-31971457 None:intergenic 30.0%
! TTGCACATACTTTGTTGATT+AGG + chr4.1:31971666-31971685 None:intergenic 30.0%
!! AATGAAAAGGTGTGTACTTT+TGG - chr4.1:31967900-31967919 MS.gene51067:intron 30.0%
!! ATCTGTCATAGCCTTATTAA+CGG + chr4.1:31972082-31972101 None:intergenic 30.0%
!! GGGTGTCTGAATTTATTTTT+AGG - chr4.1:31967944-31967963 MS.gene51067:intron 30.0%
!! GTTTCAAAGATGGATTTTGT+GGG - chr4.1:31968043-31968062 MS.gene51067:intron 30.0%
!! TATTTATAGGCATTGAAGGA+TGG - chr4.1:31968856-31968875 MS.gene51067:intron 30.0%
!! TGTTTCAAAGATGGATTTTG+TGG - chr4.1:31968042-31968061 MS.gene51067:intron 30.0%
!! TTTCAAAGATGGATTTTGTG+GGG - chr4.1:31968044-31968063 MS.gene51067:intron 30.0%
!!! AAGATTCCTTGTTGTTTTCT+TGG + chr4.1:31967057-31967076 None:intergenic 30.0%
!!! GTTTTTTCTGCAAGAAGATT+TGG + chr4.1:31968328-31968347 None:intergenic 30.0%
!!! TATTTTTAGGATTGCAAGGA+GGG - chr4.1:31967957-31967976 MS.gene51067:intron 30.0%
!!! TTATTTTTAGGATTGCAAGG+AGG - chr4.1:31967956-31967975 MS.gene51067:intron 30.0%
AAAGCTAAAAATCGAATGCG+AGG - chr4.1:31968540-31968559 MS.gene51067:intron 35.0%
AACACACATTGTTCCTTGTT+AGG + chr4.1:31971694-31971713 None:intergenic 35.0%
AACACGCTAAAAAGAAGGAA+AGG + chr4.1:31968612-31968631 None:intergenic 35.0%
AACCTTGCATATGCATATTG+GGG + chr4.1:31969378-31969397 None:intergenic 35.0%
AACTCAATAAAGACAGGGTA+AGG + chr4.1:31969782-31969801 None:intergenic 35.0%
AAGCCAAAAGTTTCTACATG+GGG - chr4.1:31968250-31968269 MS.gene51067:CDS 35.0%
ACAACCTTGCATATGCATAT+TGG + chr4.1:31969380-31969399 None:intergenic 35.0%
ACAAGCCAAAAGTTTCTACA+TGG - chr4.1:31968248-31968267 MS.gene51067:CDS 35.0%
ACAATTCATGTACAGCTTTC+AGG - chr4.1:31969732-31969751 MS.gene51067:intron 35.0%
ACATTATGGTGAGATGTGAT+TGG - chr4.1:31969853-31969872 MS.gene51067:intron 35.0%
AGTTAGGTTTCAGCAAAGAA+AGG + chr4.1:31969435-31969454 None:intergenic 35.0%
ATCTCACCATAATGTTACTG+TGG + chr4.1:31969848-31969867 None:intergenic 35.0%
ATGTACAAGATGTTTAGAGG+TGG - chr4.1:31968973-31968992 MS.gene51067:intron 35.0%
ATTGTGAGGAAACTTAGTAG+AGG + chr4.1:31971491-31971510 None:intergenic 35.0%
CAACCTTGCATATGCATATT+GGG + chr4.1:31969379-31969398 None:intergenic 35.0%
CAAGCCAAAAGTTTCTACAT+GGG - chr4.1:31968249-31968268 MS.gene51067:CDS 35.0%
CACAAACAATTGGACTATCT+AGG + chr4.1:31968350-31968369 None:intergenic 35.0%
CATTGACAAATTACCCTTCA+AGG - chr4.1:31968936-31968955 MS.gene51067:intron 35.0%
CCACAAATAGTGAAGAGATA+GGG + chr4.1:31967563-31967582 None:intergenic 35.0%
GCATTCAGAGAGATGATATT+AGG + chr4.1:31969029-31969048 None:intergenic 35.0%
GCCAACTAATACAAACCAAA+AGG - chr4.1:31969047-31969066 MS.gene51067:intron 35.0%
GCTGCTTACAAGAAGAAATA+TGG - chr4.1:31968502-31968521 MS.gene51067:intron 35.0%
GCTTATATATGAACTCTTGC+AGG - chr4.1:31970777-31970796 MS.gene51067:intron 35.0%
GTCAATGACTTTCTCATAGT+AGG + chr4.1:31968923-31968942 None:intergenic 35.0%
TAACAAGGAACAATGTGTGT+TGG - chr4.1:31971693-31971712 MS.gene51067:intron 35.0%
TATAAGCACCCAATTATCTC+CGG + chr4.1:31967519-31967538 None:intergenic 35.0%
TCATGACATATACTCTAGCA+GGG - chr4.1:31969142-31969161 MS.gene51067:intron 35.0%
TCTGTTAGTGAAACTGATCA+AGG - chr4.1:31967274-31967293 MS.gene51067:CDS 35.0%
TCTTGCCTACTTTAACACTT+GGG + chr4.1:31969705-31969724 None:intergenic 35.0%
TGATTGCAAGGAGACTTTAT+TGG - chr4.1:31971873-31971892 MS.gene51067:CDS 35.0%
TGTACAAGATGTTTAGAGGT+GGG - chr4.1:31968974-31968993 MS.gene51067:intron 35.0%
TGTAGCCAAAGATACAACAA+TGG - chr4.1:31967826-31967845 MS.gene51067:intron 35.0%
TGTATCTTTGGCTACAATTG+AGG + chr4.1:31967822-31967841 None:intergenic 35.0%
TTAGGCCATTGTTGTATCTT+TGG + chr4.1:31967834-31967853 None:intergenic 35.0%
TTAGTGAACGAAGTCATAGA+TGG + chr4.1:31969527-31969546 None:intergenic 35.0%
TTCAATCTCTTTGTGTTCCA+AGG + chr4.1:31971087-31971106 None:intergenic 35.0%
TTCGGACAATAAGAAGACAA+GGG - chr4.1:31968075-31968094 MS.gene51067:intron 35.0%
TTCTTGCCTACTTTAACACT+TGG + chr4.1:31969706-31969725 None:intergenic 35.0%
TTGAGCCACTTCATCTTTAA+CGG + chr4.1:31970905-31970924 None:intergenic 35.0%
TTGTGAGGAAACTTAGTAGA+GGG + chr4.1:31971490-31971509 None:intergenic 35.0%
TTTCGGACAATAAGAAGACA+AGG - chr4.1:31968074-31968093 MS.gene51067:intron 35.0%
TTTGCAAACATACCTACTGA+GGG + chr4.1:31969290-31969309 None:intergenic 35.0%
! GCACATACTTTGTTGATTAG+GGG + chr4.1:31971664-31971683 None:intergenic 35.0%
! TTGCTTCACCTATTTTGCAT+CGG - chr4.1:31967493-31967512 MS.gene51067:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4.1:31970330-31970311 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+TGG - chr4.1:31970311-31970330 MS.gene51067:intron 35.0%
!! AAGGTTGTTATTTCAGACTG+GGG - chr4.1:31969392-31969411 MS.gene51067:intron 35.0%
!! CAAGGTTGTTATTTCAGACT+GGG - chr4.1:31969391-31969410 MS.gene51067:intron 35.0%
!! GAAAGGCATTCACAAACAAT+TGG + chr4.1:31968360-31968379 None:intergenic 35.0%
!! GACAATAGTGTTGGTAAGAA+GGG - chr4.1:31968010-31968029 MS.gene51067:intron 35.0%
!! TGACAATAGTGTTGGTAAGA+AGG - chr4.1:31968009-31968028 MS.gene51067:intron 35.0%
!! TTGAAATGAAGGCATTCACT+TGG - chr4.1:31968756-31968775 MS.gene51067:intron 35.0%
!! TTTTAGAAGCAACAAGCAAG+TGG - chr4.1:31971409-31971428 MS.gene51067:intron 35.0%
!!! ACTTATTTTGGGTGCTTAAG+TGG + chr4.1:31967641-31967660 None:intergenic 35.0%
!!! CCCTTTTGGTTTGTATTAGT+TGG + chr4.1:31969051-31969070 None:intergenic 35.0%
!!! CTTATTTTGGGTGCTTAAGT+GGG + chr4.1:31967640-31967659 None:intergenic 35.0%
!!! GACACTCATTTTGAAATGGA+GGG - chr4.1:31970351-31970370 MS.gene51067:intron 35.0%
!!! TCGCATTCGATTTTTAGCTT+TGG + chr4.1:31968541-31968560 None:intergenic 35.0%
!!! TTATTTTGGGTGCTTAAGTG+GGG + chr4.1:31967639-31967658 None:intergenic 35.0%
AAAGTTGGAGAGGGTAAAGT+TGG - chr4.1:31970256-31970275 MS.gene51067:CDS 40.0%
ACATGTGATGCTTCAATACC+TGG - chr4.1:31971994-31972013 MS.gene51067:CDS 40.0%
ACCTGGCTATGATATCACTA+AGG - chr4.1:31971758-31971777 MS.gene51067:intron 40.0%
AGTGTTAGATGATGTCTACG+AGG - chr4.1:31967760-31967779 MS.gene51067:intron 40.0%
ATATGAACTCTTGCAGGCTA+TGG - chr4.1:31970783-31970802 MS.gene51067:intron 40.0%
ATGTGCAAACTTGCCTAACA+AGG - chr4.1:31971678-31971697 MS.gene51067:intron 40.0%
ATTATGGTTGCAAGCAGCTT+TGG - chr4.1:31971960-31971979 MS.gene51067:CDS 40.0%
ATTGCGATCTTCACAGAAAC+CGG + chr4.1:31967217-31967236 None:intergenic 40.0%
CACAATCGTGGTAGCAATTT+AGG + chr4.1:31967852-31967871 None:intergenic 40.0%
CCAAACCTTGTTGAATTCCT+GGG + chr4.1:31971852-31971871 None:intergenic 40.0%
CCAAACGTGATGCTCAATTA+TGG - chr4.1:31971944-31971963 MS.gene51067:CDS 40.0%
CCATAATTGAGCATCACGTT+TGG + chr4.1:31971947-31971966 None:intergenic 40.0%
CCCTATCTCTTCACTATTTG+TGG - chr4.1:31967560-31967579 MS.gene51067:CDS 40.0%
CCTATACTTCCAAGTCAAAG+AGG + chr4.1:31969559-31969578 None:intergenic 40.0%
CCTGGCTATGATATCACTAA+GGG - chr4.1:31971759-31971778 MS.gene51067:intron 40.0%
CGCTAAAAAGAAGGAAAGGA+TGG + chr4.1:31968608-31968627 None:intergenic 40.0%
CTAAATTGCTACCACGATTG+TGG - chr4.1:31967850-31967869 MS.gene51067:intron 40.0%
CTTTGCAAACATACCTACTG+AGG + chr4.1:31969291-31969310 None:intergenic 40.0%
GAAGGATGGTGACTTCTTAA+TGG - chr4.1:31968870-31968889 MS.gene51067:intron 40.0%
GATGATCGACGATCCAAATT+TGG - chr4.1:31971825-31971844 MS.gene51067:intron 40.0%
GCCACAAATAGTGAAGAGAT+AGG + chr4.1:31967564-31967583 None:intergenic 40.0%
GGTTTGGGAATTGAGCAAAA+CGG - chr4.1:31967166-31967185 MS.gene51067:CDS 40.0%
GTACAAGATGTTTAGAGGTG+GGG - chr4.1:31968975-31968994 MS.gene51067:intron 40.0%
GTCATGACATATACTCTAGC+AGG - chr4.1:31969141-31969160 MS.gene51067:intron 40.0%
TACAAGATGTTTAGAGGTGG+GGG - chr4.1:31968976-31968995 MS.gene51067:intron 40.0%
TATACTCTAGCAGGGAAACT+AGG - chr4.1:31969150-31969169 MS.gene51067:intron 40.0%
TCATCATCCTTAGTCTGTTC+AGG + chr4.1:31968217-31968236 None:intergenic 40.0%
TCCCTTCCTAAAAATGGCAA+GGG + chr4.1:31971251-31971270 None:intergenic 40.0%
TCGGACAATAAGAAGACAAG+GGG - chr4.1:31968076-31968095 MS.gene51067:intron 40.0%
TCTCACCCAAGTGTTAAAGT+AGG - chr4.1:31969697-31969716 MS.gene51067:intron 40.0%
TCTGAGAAGGAGTCTGAAAA+AGG + chr4.1:31968121-31968140 None:intergenic 40.0%
TGAATTCCTGGGTCCAAATT+TGG + chr4.1:31971841-31971860 None:intergenic 40.0%
TGAGCCACTTCATCTTTAAC+GGG + chr4.1:31970904-31970923 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG - chr4.1:31970247-31970266 MS.gene51067:CDS 40.0%
TTTCACATCGGATAGTATCC+CGG + chr4.1:31971803-31971822 None:intergenic 40.0%
! ACACCCCATGTAGAAACTTT+TGG + chr4.1:31968256-31968275 None:intergenic 40.0%
! ATGTGTGTTGGTCCTTTCTT+CGG - chr4.1:31971705-31971724 MS.gene51067:intron 40.0%
! CATTGCTGTTGCCGTTAATA+AGG - chr4.1:31972068-31972087 MS.gene51067:CDS 40.0%
! GCGCTTGACCTCAATTTTAT+TGG + chr4.1:31971442-31971461 None:intergenic 40.0%
! GGGCAAACAAAATACCCTTT+TGG + chr4.1:31969065-31969084 None:intergenic 40.0%
! GTCGATCATCGTTTTCACAT+CGG + chr4.1:31971815-31971834 None:intergenic 40.0%
! TGACTTGTGCAAAGGTAACT+TGG + chr4.1:31971639-31971658 None:intergenic 40.0%
!! ATGAGTGTCGCTTTAAGCTT+TGG - chr4.1:31970118-31970137 MS.gene51067:intron 40.0%
!! ATGGATTAGCTGCTTTACAG+TGG - chr4.1:31969248-31969267 MS.gene51067:intron 40.0%
!! CCTCTTTGACTTGGAAGTAT+AGG - chr4.1:31969556-31969575 MS.gene51067:intron 40.0%
!! GCAAGGTTGTTATTTCAGAC+TGG - chr4.1:31969390-31969409 MS.gene51067:intron 40.0%
!! TTGTTATTTCAGACTGGGGA+CGG - chr4.1:31969396-31969415 MS.gene51067:intron 40.0%
!!! AACCCTTGCCATTTTTAGGA+AGG - chr4.1:31971246-31971265 MS.gene51067:intron 40.0%
!!! ACCCTTGCCATTTTTAGGAA+GGG - chr4.1:31971247-31971266 MS.gene51067:intron 40.0%
!!! CGACACTCATTTTGAAATGG+AGG - chr4.1:31970350-31970369 MS.gene51067:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4.1:31970107-31970126 None:intergenic 40.0%
!!! TCTCAACCCTTGCCATTTTT+AGG - chr4.1:31971242-31971261 MS.gene51067:intron 40.0%
ACAAGGTTTGGCTGATTGCA+AGG - chr4.1:31971861-31971880 MS.gene51067:intron 45.0%
ATAAAGCGCAACCACAATCG+TGG + chr4.1:31967864-31967883 None:intergenic 45.0%
CAAACTGAACAGGTCAAGGA+AGG + chr4.1:31968396-31968415 None:intergenic 45.0%
CATGCGGTTCGTGCTAAAAT+GGG - chr4.1:31967924-31967943 MS.gene51067:intron 45.0%
CCCAGGAATTCAACAAGGTT+TGG - chr4.1:31971849-31971868 MS.gene51067:intron 45.0%
CCCTTAGTGATATCATAGCC+AGG + chr4.1:31971762-31971781 None:intergenic 45.0%
CCTGAGGTGGAGCTTATTAT+CGG - chr4.1:31968151-31968170 MS.gene51067:intron 45.0%
CGCATCAATCGAAGTTATCG+AGG + chr4.1:31967798-31967817 None:intergenic 45.0%
CTACCATAGCCTCTTTGACT+TGG - chr4.1:31969547-31969566 MS.gene51067:intron 45.0%
CTACCCCGTTAAAGATGAAG+TGG - chr4.1:31970897-31970916 MS.gene51067:CDS 45.0%
CTCCCCAATATGCATATGCA+AGG - chr4.1:31969373-31969392 MS.gene51067:intron 45.0%
CTCCCTTCCTAAAAATGGCA+AGG + chr4.1:31971252-31971271 None:intergenic 45.0%
CTTCCAAGTCAAAGAGGCTA+TGG + chr4.1:31969553-31969572 None:intergenic 45.0%
CTTCCTTGACCTGTTCAGTT+TGG - chr4.1:31968394-31968413 MS.gene51067:intron 45.0%
CTTGTGCAAAGGTAACTTGG+TGG + chr4.1:31971636-31971655 None:intergenic 45.0%
GAACAGGTCAAGGAAGGAAA+GGG + chr4.1:31968390-31968409 None:intergenic 45.0%
GACCTCTCCCTTCCTAAAAA+TGG + chr4.1:31971257-31971276 None:intergenic 45.0%
GAGAGAACATCATCATCACC+AGG + chr4.1:31972015-31972034 None:intergenic 45.0%
GAGCCACTTCATCTTTAACG+GGG + chr4.1:31970903-31970922 None:intergenic 45.0%
GCAGGCTATGGAAATGATGA+AGG - chr4.1:31970795-31970814 MS.gene51067:intron 45.0%
GCCAAACCTTGTTGAATTCC+TGG + chr4.1:31971853-31971872 None:intergenic 45.0%
GCTAAAAATCGAATGCGAGG+AGG - chr4.1:31968543-31968562 MS.gene51067:intron 45.0%
GGCTATGATATCACTAAGGG+TGG - chr4.1:31971762-31971781 MS.gene51067:intron 45.0%
GGTTTCTGTGAAGATCGCAA+TGG - chr4.1:31967216-31967235 MS.gene51067:CDS 45.0%
GTGGAAGAACTATACGTCCT+GGG - chr4.1:31968419-31968438 MS.gene51067:intron 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG - chr4.1:31970246-31970265 MS.gene51067:CDS 45.0%
TAGGAAGGGAGAGGTCATAT+AGG - chr4.1:31971261-31971280 MS.gene51067:intron 45.0%
TCATGCGGTTCGTGCTAAAA+TGG - chr4.1:31967923-31967942 MS.gene51067:intron 45.0%
TCTGAAAAAGGAACCAGTCC+AGG + chr4.1:31968109-31968128 None:intergenic 45.0%
TGAACAGGTCAAGGAAGGAA+AGG + chr4.1:31968391-31968410 None:intergenic 45.0%
TGGAAGAACTATACGTCCTG+GGG - chr4.1:31968420-31968439 MS.gene51067:intron 45.0%
TGGAGGGAAAAAGGATTTGC+CGG - chr4.1:31967195-31967214 MS.gene51067:CDS 45.0%
TGTGAAGATCGCAATGGAGA+AGG - chr4.1:31967222-31967241 MS.gene51067:CDS 45.0%
TTGGACCCAGGAATTCAACA+AGG - chr4.1:31971844-31971863 MS.gene51067:intron 45.0%
TTTGTCAAGACTCCCTCAGT+AGG - chr4.1:31969275-31969294 MS.gene51067:intron 45.0%
! ACAAGCGACTCTAAAAGACC+TGG - chr4.1:31971741-31971760 MS.gene51067:intron 45.0%
! ATTGAGCAAAACGGTGCTGA+TGG - chr4.1:31967175-31967194 MS.gene51067:CDS 45.0%
! GGTGTGTACTTTTGGTCATG+CGG - chr4.1:31967908-31967927 MS.gene51067:intron 45.0%
! TGGTGACTTCTTAATGGACG+CGG - chr4.1:31968876-31968895 MS.gene51067:intron 45.0%
!! AAGATGGATTTTGTGGGGCT+TGG - chr4.1:31968049-31968068 MS.gene51067:intron 45.0%
!! TAGGGGATTGACTTGTGCAA+AGG + chr4.1:31971647-31971666 None:intergenic 45.0%
!! TCACTCTCTAAAATCTCCCC+AGG + chr4.1:31968439-31968458 None:intergenic 45.0%
!! TGTTATTTCAGACTGGGGAC+GGG - chr4.1:31969397-31969416 MS.gene51067:intron 45.0%
!! TTCACCTATTTTGCATCGGC+CGG - chr4.1:31967497-31967516 MS.gene51067:CDS 45.0%
!! TTTTGTGGGGCTTGGCTTTT+CGG - chr4.1:31968057-31968076 MS.gene51067:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4.1:31970108-31970127 None:intergenic 45.0%
!!! GGTCTTTTAGAGTCGCTTGT+TGG + chr4.1:31971741-31971760 None:intergenic 45.0%
!!! TGCCATTTTTAGGAAGGGAG+AGG - chr4.1:31971252-31971271 MS.gene51067:intron 45.0%
!! TAAGAATAAATATAAATAAT+AGG + chr4.1:31969475-31969494 None:intergenic 5.0%
!!! ATATTAAATCAAAATATTTT+TGG - chr4.1:31970018-31970037 MS.gene51067:intron 5.0%
AAGCCAGCTTGAGGATACTG+TGG - chr4.1:31971903-31971922 MS.gene51067:CDS 50.0%
AATGGACGCGGGAAAACTGA+AGG - chr4.1:31968888-31968907 MS.gene51067:intron 50.0%
AGGCAAGTCATCGTCTGAGA+AGG + chr4.1:31968134-31968153 None:intergenic 50.0%
ATCCATGTAGCTCACTCTGC+AGG + chr4.1:31969234-31969253 None:intergenic 50.0%
ATCTCCGGCCGATGCAAAAT+AGG + chr4.1:31967504-31967523 None:intergenic 50.0%
CCGATAATAAGCTCCACCTC+AGG + chr4.1:31968154-31968173 None:intergenic 50.0%
CCTCCAAACTGAACAGGTCA+AGG + chr4.1:31968400-31968419 None:intergenic 50.0%
CCTTGACCTGTTCAGTTTGG+AGG - chr4.1:31968397-31968416 MS.gene51067:intron 50.0%
CTTCCACCTCCAAACTGAAC+AGG + chr4.1:31968406-31968425 None:intergenic 50.0%
GAAAAAGGAACCAGTCCAGG+TGG + chr4.1:31968106-31968125 None:intergenic 50.0%
GACGATCCAAATTTGGACCC+AGG - chr4.1:31971832-31971851 MS.gene51067:intron 50.0%
GGCTCACTTTGTCCGAAGAA+AGG + chr4.1:31971720-31971739 None:intergenic 50.0%
GGTGGAAGAACTATACGTCC+TGG - chr4.1:31968418-31968437 MS.gene51067:intron 50.0%
TCCACAGCCTGAACAGACTA+AGG - chr4.1:31968207-31968226 MS.gene51067:intron 50.0%
TCCATGTAGCTCACTCTGCA+GGG + chr4.1:31969233-31969252 None:intergenic 50.0%
TCCTTAGTCTGTTCAGGCTG+TGG + chr4.1:31968211-31968230 None:intergenic 50.0%
TGACCTGTTCAGTTTGGAGG+TGG - chr4.1:31968400-31968419 MS.gene51067:intron 50.0%
TTATTTCAGACTGGGGACGG+GGG - chr4.1:31969399-31969418 MS.gene51067:intron 50.0%
! GGTGACTTCTTAATGGACGC+GGG - chr4.1:31968877-31968896 MS.gene51067:intron 50.0%
! GTTATTTCAGACTGGGGACG+GGG - chr4.1:31969398-31969417 MS.gene51067:intron 50.0%
! TGCATCGGCCGGAGATAATT+GGG - chr4.1:31967508-31967527 MS.gene51067:CDS 50.0%
! TTGCATCGGCCGGAGATAAT+TGG - chr4.1:31967507-31967526 MS.gene51067:CDS 50.0%
!! AAGGAGGGAGTGAGAGTACT+TGG - chr4.1:31967972-31967991 MS.gene51067:intron 50.0%
!! AGCAAAACGGTGCTGATGGA+GGG - chr4.1:31967179-31967198 MS.gene51067:CDS 50.0%
!! AGGAGGGAGTGAGAGTACTT+GGG - chr4.1:31967973-31967992 MS.gene51067:intron 50.0%
AAGACAAGGGGATTGCCACC+TGG - chr4.1:31968088-31968107 MS.gene51067:intron 55.0%
CTGCCACAGTATCCTCAAGC+TGG + chr4.1:31971909-31971928 None:intergenic 55.0%
GGATGCAGAAAGCCAGCTTG+AGG - chr4.1:31971894-31971913 MS.gene51067:CDS 55.0%
TATCCCGGTCGCGTTTGAAG+CGG + chr4.1:31971788-31971807 None:intergenic 55.0%
! AGACGATGACTTGCCTGAGG+TGG - chr4.1:31968138-31968157 MS.gene51067:intron 55.0%
! CTCAGACGATGACTTGCCTG+AGG - chr4.1:31968135-31968154 MS.gene51067:intron 55.0%
!! CGGTGCTGATGGAGGGAAAA+AGG - chr4.1:31967186-31967205 MS.gene51067:CDS 55.0%
!! GAGCAAAACGGTGCTGATGG+AGG - chr4.1:31967178-31967197 MS.gene51067:CDS 55.0%
!! GGAGGGAGTGAGAGTACTTG+GGG - chr4.1:31967974-31967993 MS.gene51067:intron 55.0%
AAGGGGATTGCCACCTGGAC+TGG - chr4.1:31968093-31968112 MS.gene51067:intron 60.0%
GCCCTGCAGAGTGAGCTACA+TGG - chr4.1:31969229-31969248 MS.gene51067:intron 60.0%
GTGGCCGCTTCAAACGCGAC+CGG - chr4.1:31971781-31971800 MS.gene51067:intron 65.0%
TGGCCGCTTCAAACGCGACC+GGG - chr4.1:31971782-31971801 MS.gene51067:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 31967049 31972116 31967049 ID=MS.gene51067
chr4.1 mRNA 31967049 31972116 31967049 ID=MS.gene51067.t1;Parent=MS.gene51067
chr4.1 exon 31971870 31972116 31971870 ID=MS.gene51067.t1.exon1;Parent=MS.gene51067.t1
chr4.1 CDS 31971870 31972116 31971870 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31970859 31971199 31970859 ID=MS.gene51067.t1.exon2;Parent=MS.gene51067.t1
chr4.1 CDS 31970859 31971199 31970859 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31970601 31970753 31970601 ID=MS.gene51067.t1.exon3;Parent=MS.gene51067.t1
chr4.1 CDS 31970601 31970753 31970601 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31970208 31970300 31970208 ID=MS.gene51067.t1.exon4;Parent=MS.gene51067.t1
chr4.1 CDS 31970208 31970300 31970208 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31969869 31969927 31969869 ID=MS.gene51067.t1.exon5;Parent=MS.gene51067.t1
chr4.1 CDS 31969869 31969927 31969869 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31969412 31969505 31969412 ID=MS.gene51067.t1.exon6;Parent=MS.gene51067.t1
chr4.1 CDS 31969412 31969505 31969412 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31968215 31968366 31968215 ID=MS.gene51067.t1.exon7;Parent=MS.gene51067.t1
chr4.1 CDS 31968215 31968366 31968215 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
chr4.1 exon 31967049 31967595 31967049 ID=MS.gene51067.t1.exon8;Parent=MS.gene51067.t1
chr4.1 CDS 31967049 31967595 31967049 ID=cds.MS.gene51067.t1;Parent=MS.gene51067.t1
Gene Sequence

>MS.gene51067

ATGAACCAAGAAAACAACAAGGAATCTTCTGAAGCTGAAAAAACTGCTTCTGTTGATCCTATAAAGCTTGCGTTTAATAAAGCTAAAGCTTATAAAGAATCGATTAAATCAAACTCTGGTTTGGGAATTGAGCAAAACGGTGCTGATGGAGGGAAAAAGGATTTGCCGGTTTCTGTGAAGATCGCAATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAGAGGTTTCTGTTAGTGAAACTGATCAAGGTAATAATTATGAACTGACTTATTTGAGTTTATTTAACACTTGTGAATCTGTTTGATGAGATAACTTGTGAAAACAGCTTGTGAGTTGTCACATATTGACATGTTCATAAGCTGTTTTTAGCTTATTTCCATAAGTACTTTGCTTATGCTATAAGTGCTTAATTAATGTGTTAGGTTATCATTGAACACAAAGATAGTTGCTTCACCTATTTTGCATCGGCCGGAGATAATTGGGTGCTTATAGAAAATATGCTTATGGAAGCACCCTATCTCTTCACTATTTGTGGCCGCTATTTAATAATACTATAGATTTATAAAATGAGTGATGTGTATGTATGATCCCCACTTAAGCACCCAAAATAAGTATGGTCTTATTAAAAACAATGTCGTATTATTTATTATAAAACGAAGTCATTGGCGTGTTTCGATTTCTGCTTCCATTAGTTGATGTCTTTGATTATTTCAGTGTTAGATGATGTCTACGAGGTCACATTGCTATCCTCGATAACTTCGATTGATGCGACCTCAATTGTAGCCAAAGATACAACAATGGCCTAAATTGCTACCACGATTGTGGTTGCGCTTTATTTTTATAAACATTGATAATGAAAAGGTGTGTACTTTTGGTCATGCGGTTCGTGCTAAAATGGGTGTCTGAATTTATTTTTAGGATTGCAAGGAGGGAGTGAGAGTACTTGGGGAGAAAATGTGAATGACAATAGTGTTGGTAAGAAGGGAGAATTGTCTGTTTCAAAGATGGATTTTGTGGGGCTTGGCTTTTCGGACAATAAGAAGACAAGGGGATTGCCACCTGGACTGGTTCCTTTTTCAGACTCCTTCTCAGACGATGACTTGCCTGAGGTGGAGCTTATTATCGGAGATGCAAACAACTTTGATGCTACAACAACAGCTCCACAGCCTGAACAGACTAAGGATGATGAGTCAGAACTGTACAAGCCAAAAGTTTCTACATGGGGTGTATTTCCTAGACCTAACAATATTTCAAAAACAGTATGTATTCAGTATTTGCCAAATCTTCTTGCAGAAAAAACCTAGATAGTCCAATTGTTTGTGAATGCCTTTCAAATTTACCCTTTCCTTCCTTGACCTGTTCAGTTTGGAGGTGGAAGAACTATACGTCCTGGGGAGATTTTAGAGAGTGAAGAAGAAAAGGCTGCTAAAGAAGCACGCACGAAGCAGATGCTTGCTGCTTACAAGAAGAAATATGGATTAAATATTGATCCAAAGCTAAAAATCGAATGCGAGGAGGTAAACATATCATATCTATTGGTATCCCAAAATATTCTTACCATCCTTTCCTTCTTTTTAGCGTGTTTTTTCTTCTTCTTTGCAATATTTGTTTGCATATGGTTTATTTGTATGCATGTGAGTATATCTTAATTTCATAGATATTGAATGTAGTGTATCATTAGCAATGGCTGATCAAGTTTCTTAACTTGTTGAAATGAAGGCATTCACTTGGTTTGAAATAGAATGTGATAGATCATTAAATTGATCATTAGCAATCCCAACATGATTTATTTCATGAATTGTATATAATATTTATAGGCATTGAAGGATGGTGACTTCTTAATGGACGCGGGAAAACTGAAGGATGCTTTACCCTACTATGAGAAAGTCATTGACAAATTACCCTTCAAGGTAAACTTCTAAATTATGTACAAGATGTTTAGAGGTGGGGGAATGCATATCTATTTTTTCAGTAAGAACCTAATATCATCTCTCTGAATGCCAACTAATACAAACCAAAAGGGTATTTTGTTTGCCCTTTTTTAAAGCATTTTTTAGCTTTACATTTTATGTTTAATATTTGAACGTTTGAATGTCATGACATATACTCTAGCAGGGAAACTAGGAAAACATATATATGGAGGATTTAGAGGAATATATGAATGAGATTGAACATGTCTGTGCCCTGCAGAGTGAGCTACATGGATTAGCTGCTTTACAGTGGTCGATTTGTCAAGACTCCCTCAGTAGGTATGTTTGCAAAGTTCTTGACATATCTAAAATTCTCATCGAATCTACCATGTTATGTTCTACATAGACTTGAAGACTCCCCAATATGCATATGCAAGGTTGTTATTTCAGACTGGGGACGGGGGAGAATAATATCCTTTCTTTGCTGAAACCTAACTATATTATCTATACCTATCCTATTATTTATATTTATTCTTATGAAATTGAACTATGATTATGTCACTGCTCCATCTATGACTTCGTTCACTAACTACCATAGCCTCTTTGACTTGGAAGTATAGGTGTTTTGCTTATTATTTATGGTCTGTTTACTTATTCTTAATAAAAAAGTTTCCAAACATATTTTGATTTGATGATTGACAGGCACAATGAAGCTCGAAGTATGTATGAAAAGCTTCAATCTCACCCAAGTGTTAAAGTAGGCAAGAAAGCAAGACAATTCATGTACAGCTTTCAGGTAACATGATTTGCTAAATGTGCAACCTTACCCTGTCTTTATTGAGTTCAATGATCATGCATAAAATAATTTTACACATGTATTCAATATTCCACAGTAACATTATGGTGAGATGTGATTGGATGCACATGTTAAACTTGTTTGTCCTATTAGTGCATATACTCATCAAACTTTTTTATTTGTGGAAAAAATGTGATTGTCGATTTGTCTTGTCTAATAGTAGTGTAGCACCTGCATTACACTGTAAAATTAAAAATATAAAAGATATTAAATCAAAATATTTTTGGAAAATTAGCAAATAAAACAGTATCATTACAAAATAAATGTAACGGAATACATAATCTAATACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAAGCTTTGGCACACAGATTAAGAAATAGAATGAAATAATCATTGGATATAACGCTTTTACTAAACTGTCCTTACTTTATAAGAAAAAGACAAAATTAAAGTTGCATTGAAAATTGTGTGAGAGAAAAGTTGGAGAGGGTAAAGTTGGAAGAAAAAAATTAAAGTTGTATTGGAAATGTAAAGCGACACTCATTTTGAAACAAATTTTTTTGGCTAAAGCGACACTCATTTTGAAATGGAGGGAGTAGTATAATTTTAATGAGAAAAATATTTATTTACAAATGGATAACCTTTTAAAGAGTGTTAAAAGTATAACACGTAGTTAATAGAGAATTTTATAACTGTTGATTCCTTTGAATTCAATACTTTCATACCATTTTTTACATGAAAGCTTGTAAGTTGACATCCATTATCCAATTTTACTTTGCAAATAATAATGGTAAAACTATGAAATTTTTAGAAAGGAAAATGAAATATTTTTTCTTGCAAGTAAACCTATATTTCGATCTAGCTTTGTATTGCTTGCTTCTGCACACCTTGTGCTTAAACTTTGTTTCATTCCGTAGTAATGATTTTCTTTGCTTATTAAAAAAAATTAATATCGCTTTCAATCTAGATTACAATAAATATATTTTCATTGAATATTGCTTATATATGAACTCTTGCAGGCTATGGAAATGATGAAGGTTAGAACAAGATCTTCTCGTTATTCAAAGAACACATTTTACCAGAGTTATTTTGATGCATTTATCGAAAACAAATCAAACTACCCCGTTAAAGATGAAGTGGCTCAAGAAAGTGAAATCAATCAGGTTTTGCTGTATATTGTTTTTCTCATTTCTCCTATTTTTGTTGTACTACTTCTTGCAGTGCAGAAAAGAATATAAATTTCTTTCTTTTGTTTGTATATAACTATAAGTGTACCATTTCTTTTTAATTGTTAATGATCAAGTCCTTGGAACACAAAGAGATTGAATATATCCGGTTTGAACAACTTAATAGATATGTATAGGTATTTTTGTTTAGAAGCAGATATTTATATGTATATAGTAGGATAGGATATGACATAAGATTGGAATTTGGATGGAAGAAGTAAGAATCATGCAGATACTCTCAACCCTTGCCATTTTTAGGAAGGGAGAGGTCATATAGGATCTAAATTGCACTTTGTCTCTTATATTCTAAAAAATACTTCATGTGGTCCCTAGTTTTGCCAAAAATAGAAAAGTAATGAGTGATAAGTGTTAGTGTATATCTATCCCTAAATTAATACTCTAATTTTAGAAGCAACAAGCAAGTGGTAACCATCCAATAAAATTGAGGTCAAGCGCATCTCTCCAATTACAAACAATTTAACCCTCTACTAAGTTTCCTCACAATAGTTTATAAACAAAAACTTGAATTAATTAGTTTCATAAAATTAAACTAAATCAACATAGAAGAAAAAGAATGGAAGTCACAAAATACTTATCTCTCTTGGCTATCTACCTCATTTTATTAAACCACCAAGTTACCTTTGCACAAGTCAATCCCCTAATCAACAAAGTATGTGCAAACTTGCCTAACAAGGAACAATGTGTGTTGGTCCTTTCTTCGGACAAAGTGAGCCAACAAGCGACTCTAAAAGACCTGGCTATGATATCACTAAGGGTGGCCGCTTCAAACGCGACCGGGATACTATCCGATGTGAAAACGATGATCGACGATCCAAATTTGGACCCAGGAATTCAACAAGGTTTGGCTGATTGCAAGGAGACTTTATTGGATGCAGAAAGCCAGCTTGAGGATACTGTGGCAGCTCTTTTGTCAAATGCCAAACGTGATGCTCAATTATGGTTGCAAGCAGCTTTGGCTGCAATTGATACATGTGATGCTTCAATACCTGGTGATGATGATGTTCTCTCTACAAAGAGTCGAGCATTTCGTCAATTGTGCAACATTGCTGTTGCCGTTAATAAGGCTATGACAGATGATGATAAAGCCTAA

Protein sequence

>MS.gene51067.t1

MNQENNKESSEAEKTASVDPIKLAFNKAKAYKESIKSNSGLGIEQNGADGGKKDLPVSVKIAMEKAKKYKQNKEVSVSETDQGLQGGSESTWGENVNDNSVGKKGELSVSKMDFVGLGFSDNKKTRGLPPGLVPFSDSFSDDDLPEVELIIGDANNFDATTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTFGGGRTIRPGEILESEEEKAAKEARTKQMLAAYKKKYGLNIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSELHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARQFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESEINQVLLRKRMEVTKYLSLLAIYLILLNHQVTFAQVNPLINKVCANLPNKEQCVLVLSSDKVSQQATLKDLAMISLRVAASNATGILSDVKTMIDDPNLDPGIQQGLADCKETLLDAESQLEDTVAALLSNAKRDAQLWLQAALAAIDTCDASIPGDDDVLSTKSRAFRQLCNIAVAVNKAMTDDDKA