Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99670.t1 | XP_013469890.1 | 96.4 | 384 | 12 | 1 | 1 | 384 | 1 | 382 | 1.30E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99670.t1 | O49562 | 60.2 | 389 | 127 | 5 | 20 | 384 | 19 | 403 | 4.3e-121 | 436.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99670.t1 | A0A072VR94 | 96.4 | 384 | 12 | 1 | 1 | 384 | 1 | 382 | 9.5e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene99670 | 0.860811 | 1.59E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene99670 | 0.854657 | 1.06E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene99670 | 0.827675 | 1.37E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene99670 | 0.86238 | 5.28E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene99670 | 0.8456 | 3.67E-59 | -1.69E-46 |
| MS.gene049609 | MS.gene99670 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene99670 | 0.879508 | 1.18E-69 | -1.69E-46 |
| MS.gene049865 | MS.gene99670 | 0.825423 | 4.73E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene99670 | 0.834387 | 3.09E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene99670 | 0.824119 | 9.59E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene99670 | 0.836626 | 8.38E-57 | -1.69E-46 |
| MS.gene050170 | MS.gene99670 | 0.893944 | 3.92E-75 | -1.69E-46 |
| MS.gene050323 | MS.gene99670 | 0.876723 | 1.11E-68 | -1.69E-46 |
| MS.gene050333 | MS.gene99670 | 0.813881 | 2.04E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene99670 | 0.806979 | 6.32E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene99670 | 0.886108 | 4.56E-72 | -1.69E-46 |
| MS.gene050504 | MS.gene99670 | 0.867415 | 1.39E-65 | -1.69E-46 |
| MS.gene050518 | MS.gene99670 | 0.861635 | 8.93E-64 | -1.69E-46 |
| MS.gene050577 | MS.gene99670 | 0.854846 | 9.37E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene99670 | 0.878 | 4.00E-69 | -1.69E-46 |
| MS.gene050675 | MS.gene99670 | 0.856691 | 2.71E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene99670 | 0.855413 | 6.42E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene99670 | 0.821021 | 5.04E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene99670 | 0.827857 | 1.24E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene99670 | 0.85477 | 9.87E-62 | -1.69E-46 |
| MS.gene050868 | MS.gene99670 | 0.871107 | 8.79E-67 | -1.69E-46 |
| MS.gene050871 | MS.gene99670 | 0.868645 | 5.60E-66 | -1.69E-46 |
| MS.gene050876 | MS.gene99670 | 0.883144 | 5.75E-71 | -1.69E-46 |
| MS.gene050904 | MS.gene99670 | 0.895242 | 1.15E-75 | -1.69E-46 |
| MS.gene050950 | MS.gene99670 | 0.822831 | 1.92E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene99670 | 0.863709 | 2.05E-64 | -1.69E-46 |
| MS.gene051268 | MS.gene99670 | 0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene99670 | 0.876135 | 1.78E-68 | -1.69E-46 |
| MS.gene051551 | MS.gene99670 | 0.801863 | 7.37E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene99670 | 0.82441 | 8.19E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene99670 | 0.830982 | 2.16E-55 | -1.69E-46 |
| MS.gene052129 | MS.gene99670 | -0.804646 | 1.95E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene99670 | 0.844616 | 6.77E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene99670 | 0.836716 | 7.95E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene99670 | 0.846069 | 2.74E-59 | -1.69E-46 |
| MS.gene052503 | MS.gene99670 | 0.805275 | 1.44E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene99670 | 0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene99670 | 0.814409 | 1.56E-51 | -1.69E-46 |
| MS.gene052822 | MS.gene99670 | 0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene99670 | 0.804963 | 1.68E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene99670 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene99670 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene052872 | MS.gene99670 | 0.819515 | 1.12E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene99670 | 0.859772 | 3.28E-63 | -1.69E-46 |
| MS.gene053203 | MS.gene99670 | 0.85521 | 7.35E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene99670 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene99670 | 0.812463 | 4.19E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene99670 | 0.81731 | 3.52E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene99670 | 0.835003 | 2.16E-56 | -1.69E-46 |
| MS.gene053480 | MS.gene99670 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene99670 | 0.825089 | 5.67E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene99670 | 0.802719 | 4.91E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene99670 | 0.867745 | 1.09E-65 | -1.69E-46 |
| MS.gene054344 | MS.gene99670 | 0.820688 | 6.01E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene99670 | 0.81138 | 7.21E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene99670 | 0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene99670 | 0.838749 | 2.39E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene99670 | 0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene99670 | 0.876311 | 1.54E-68 | -1.69E-46 |
| MS.gene054954 | MS.gene99670 | 0.880371 | 5.80E-70 | -1.69E-46 |
| MS.gene055224 | MS.gene99670 | 0.810607 | 1.06E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene99670 | -0.806567 | 7.73E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene99670 | 0.849967 | 2.30E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene99670 | 0.849077 | 4.08E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene99670 | 0.881392 | 2.49E-70 | -1.69E-46 |
| MS.gene055748 | MS.gene99670 | 0.889221 | 2.94E-73 | -1.69E-46 |
| MS.gene055750 | MS.gene99670 | 0.888434 | 5.93E-73 | -1.69E-46 |
| MS.gene055751 | MS.gene99670 | 0.902026 | 1.48E-78 | -1.69E-46 |
| MS.gene055776 | MS.gene99670 | 0.86408 | 1.57E-64 | -1.69E-46 |
| MS.gene055849 | MS.gene99670 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene99670 | 0.891716 | 3.08E-74 | -1.69E-46 |
| MS.gene055941 | MS.gene99670 | 0.80131 | 9.56E-49 | -1.69E-46 |
| MS.gene056266 | MS.gene99670 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene056283 | MS.gene99670 | 0.823655 | 1.23E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene99670 | 0.813108 | 3.02E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene99670 | 0.877286 | 7.10E-69 | -1.69E-46 |
| MS.gene056510 | MS.gene99670 | 0.887129 | 1.87E-72 | -1.69E-46 |
| MS.gene056610 | MS.gene99670 | 0.81111 | 8.25E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene99670 | 0.842192 | 3.00E-58 | -1.69E-46 |
| MS.gene056692 | MS.gene99670 | 0.845101 | 5.01E-59 | -1.69E-46 |
| MS.gene057076 | MS.gene99670 | 0.818341 | 2.06E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene99670 | 0.835822 | 1.34E-56 | -1.69E-46 |
| MS.gene057857 | MS.gene99670 | 0.819043 | 1.43E-52 | -1.69E-46 |
| MS.gene057872 | MS.gene99670 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene05787 | MS.gene99670 | 0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene99670 | 0.803673 | 3.12E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene99670 | -0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene058338 | MS.gene99670 | 0.82809 | 1.09E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene99670 | 0.847153 | 1.38E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene99670 | 0.845445 | 4.04E-59 | -1.69E-46 |
| MS.gene058448 | MS.gene99670 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene99670 | 0.815748 | 7.88E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene99670 | 0.811458 | 6.93E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene99670 | 0.858469 | 8.07E-63 | -1.69E-46 |
| MS.gene058838 | MS.gene99670 | 0.85249 | 4.46E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene99670 | 0.86648 | 2.77E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene99670 | 0.884806 | 1.40E-71 | -1.69E-46 |
| MS.gene059079 | MS.gene99670 | 0.807401 | 5.15E-50 | -1.69E-46 |
| MS.gene05912 | MS.gene99670 | 0.80933 | 2.00E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene99670 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene99670 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene99670 | 0.865634 | 5.12E-65 | -1.69E-46 |
| MS.gene059718 | MS.gene99670 | 0.845252 | 4.56E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene99670 | 0.837174 | 6.07E-57 | -1.69E-46 |
| MS.gene059837 | MS.gene99670 | 0.872456 | 3.14E-67 | -1.69E-46 |
| MS.gene059865 | MS.gene99670 | 0.883369 | 4.76E-71 | -1.69E-46 |
| MS.gene06000 | MS.gene99670 | 0.863718 | 2.04E-64 | -1.69E-46 |
| MS.gene06027 | MS.gene99670 | 0.839539 | 1.49E-57 | -1.69E-46 |
| MS.gene060595 | MS.gene99670 | -0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene99670 | 0.84557 | 3.74E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene99670 | 0.878724 | 2.23E-69 | -1.69E-46 |
| MS.gene060778 | MS.gene99670 | 0.849752 | 2.64E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene99670 | 0.867602 | 1.21E-65 | -1.69E-46 |
| MS.gene06092 | MS.gene99670 | 0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene99670 | 0.906555 | 1.31E-80 | -1.69E-46 |
| MS.gene061044 | MS.gene99670 | -0.824289 | 8.75E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene99670 | 0.841636 | 4.21E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99670.t1 | MTR_1g105545 | 96.354 | 384 | 12 | 1 | 1 | 384 | 1 | 382 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99670.t1 | AT4G21210 | 60.614 | 391 | 126 | 7 | 18 | 384 | 17 | 403 | 1.87e-161 | 459 |
| MS.gene99670.t1 | AT3G01200 | 62.466 | 365 | 122 | 6 | 28 | 384 | 20 | 377 | 1.90e-148 | 425 |
| MS.gene99670.t1 | AT4G21210 | 56.266 | 391 | 116 | 8 | 18 | 384 | 17 | 376 | 2.32e-141 | 407 |
Find 120 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCATCTCAAAACGCTATT+AGG | 0.180944 | 1.4:+81175722 | MS.gene99670:CDS |
| CTGAGAAGGCCTGCAAATTA+TGG | 0.189713 | 1.4:+81174963 | MS.gene99670:CDS |
| AATGCCTAGGACTCTCTTTC+AGG | 0.211691 | 1.4:+81175285 | MS.gene99670:CDS |
| CATTTGGGTGTGTCTCCTTC+TGG | 0.228537 | 1.4:+81175037 | MS.gene99670:CDS |
| AACCCTGTCTGGCCCGTTAT+TGG | 0.248173 | 1.4:+81175475 | MS.gene99670:CDS |
| TGATGATGTAGAGAGGTTAT+TGG | 0.259176 | 1.4:+81174865 | MS.gene99670:CDS |
| AGAGGCCATTGCTTCTCATT+TGG | 0.277345 | 1.4:+81175021 | MS.gene99670:CDS |
| CCCTGGACCACCGGTTCAGC+TGG | 0.278178 | 1.4:-81173268 | None:intergenic |
| GGCCTTCCTCGTGGTGCTTC+GGG | 0.288686 | 1.4:+81175058 | MS.gene99670:CDS |
| GAGGCCATTGCTTCTCATTT+GGG | 0.292504 | 1.4:+81175022 | MS.gene99670:CDS |
| CGAGAGGAACTTGAATTTGC+AGG | 0.302596 | 1.4:+81175436 | MS.gene99670:CDS |
| TGGCCTTCCTCGTGGTGCTT+CGG | 0.307568 | 1.4:+81175057 | MS.gene99670:CDS |
| TTTGGACATAATCGTGAAAT+TGG | 0.309134 | 1.4:-81173149 | None:intergenic |
| TCTTGCACAGAAAGGATATA+AGG | 0.314566 | 1.4:+81175231 | MS.gene99670:CDS |
| AATACGTGCCGGTCGAAAAT+TGG | 0.320881 | 1.4:+81173298 | MS.gene99670:CDS |
| AAGGCTGATATTGTTCTTAC+CGG | 0.326597 | 1.4:+81175172 | MS.gene99670:CDS |
| TGGAGAGTTGTTGGATTCTA+TGG | 0.333606 | 1.4:-81173345 | None:intergenic |
| AGTTGTTGGATTCTATGGTC+TGG | 0.342902 | 1.4:-81173340 | None:intergenic |
| ACACTGTGTTAATGCTGCTT+TGG | 0.350893 | 1.4:+81173478 | MS.gene99670:CDS |
| CCCAGCTGAACCGGTGGTCC+AGG | 0.354359 | 1.4:+81173267 | MS.gene99670:CDS |
| TTCAGCTGGGGACTCACCTT+GGG | 0.380039 | 1.4:-81173254 | None:intergenic |
| GTTGTTGGATTCTATGGTCT+GGG | 0.380440 | 1.4:-81173339 | None:intergenic |
| CTTACCGGGGTTTCCCGAAC+CGG | 0.381722 | 1.4:+81175187 | MS.gene99670:CDS |
| AAAACAAGGGCTAAAACTTT+GGG | 0.383297 | 1.4:+81175367 | MS.gene99670:CDS |
| TGAGAAGGCCTGCAAATTAT+GGG | 0.385262 | 1.4:+81174964 | MS.gene99670:CDS |
| AGGTGAGTCCCCAGCTGAAC+CGG | 0.390015 | 1.4:+81173258 | MS.gene99670:CDS |
| AGCATCTCAAAACGCTATTA+GGG | 0.392814 | 1.4:+81175723 | MS.gene99670:CDS |
| TTTAAACTAGTTACCAATAA+CGG | 0.399335 | 1.4:-81175488 | None:intergenic |
| AGAATCACGAACTAATTATT+CGG | 0.401536 | 1.4:+81175399 | MS.gene99670:CDS |
| ACAGGATCCAAGTCAGTTAC+AGG | 0.401887 | 1.4:+81173227 | MS.gene99670:CDS |
| CACTGTGTTAATGCTGCTTT+GGG | 0.405411 | 1.4:+81173479 | MS.gene99670:CDS |
| CAAAGGTGTCTTCCCGGTTC+GGG | 0.406454 | 1.4:-81175200 | None:intergenic |
| AATAGACAAAGGTGTCTTCC+CGG | 0.408718 | 1.4:-81175206 | None:intergenic |
| TCTTTGCTCAAAACCCTGTC+TGG | 0.413483 | 1.4:+81175464 | MS.gene99670:CDS |
| TCCACCTCCGGTTCCTTTCG+CGG | 0.415535 | 1.4:+81173364 | MS.gene99670:CDS |
| CTTTCAGGTTGATCCAAAGA+AGG | 0.417408 | 1.4:+81175300 | MS.gene99670:CDS |
| GATTCTATGGTCTGGGTTCG+AGG | 0.419326 | 1.4:-81173332 | None:intergenic |
| TTAAACTAGTTACCAATAAC+GGG | 0.420624 | 1.4:-81175487 | None:intergenic |
| ACAAAGGTGTCTTCCCGGTT+CGG | 0.421615 | 1.4:-81175201 | None:intergenic |
| TATATTGTCTCTGATGGAAC+CGG | 0.427728 | 1.4:+81173443 | MS.gene99670:CDS |
| AGGCACACCCCATAATTTGC+AGG | 0.429143 | 1.4:-81174972 | None:intergenic |
| TGTAGAAGTGGATGTGTGTT+TGG | 0.429379 | 1.4:-81173167 | None:intergenic |
| AGGTCGACCGCGAAAGGAAC+CGG | 0.432748 | 1.4:-81173371 | None:intergenic |
| AACCGGAGGTGGAGAGTTGT+TGG | 0.438244 | 1.4:-81173354 | None:intergenic |
| GGTTCCTTTCGCGGTCGACC+TGG | 0.440238 | 1.4:+81173373 | MS.gene99670:CDS |
| GAAGCAATGGCCTCTGTAAT+GGG | 0.440509 | 1.4:-81175013 | None:intergenic |
| TGTACTTATGCTTGCGGTCG+TGG | 0.443222 | 1.4:-81175692 | None:intergenic |
| TCAATTTATATTGTCTCTGA+TGG | 0.444492 | 1.4:+81173437 | MS.gene99670:CDS |
| GTTCAGCTGGGGACTCACCT+TGG | 0.448291 | 1.4:-81173255 | None:intergenic |
| TGAAGACGGGTCAGAGTTCA+AGG | 0.449581 | 1.4:+81173409 | MS.gene99670:CDS |
| AGAAGCAATGGCCTCTGTAA+TGG | 0.453238 | 1.4:-81175014 | None:intergenic |
| TTCACTATCAAGCAAGATGA+TGG | 0.456113 | 1.4:+81175127 | MS.gene99670:CDS |
| GATAATAAAGCAAGCAGTGA+AGG | 0.457050 | 1.4:+81174889 | MS.gene99670:CDS |
| TCTATTTATCTTGCACAGAA+AGG | 0.471352 | 1.4:+81175223 | MS.gene99670:CDS |
| TTTGGCTTGACTATAAATCA+TGG | 0.473507 | 1.4:+81175325 | MS.gene99670:CDS |
| AGGCTGATATTGTTCTTACC+GGG | 0.473769 | 1.4:+81175173 | MS.gene99670:CDS |
| GAAAACATATGAGTACAAAC+AGG | 0.474008 | 1.4:-81173536 | None:intergenic |
| GCCAACGTACCGATTGTAAT+GGG | 0.476645 | 1.4:+81175256 | MS.gene99670:CDS |
| ACCGCGAAAGGAACCGGAGG+TGG | 0.478788 | 1.4:-81173365 | None:intergenic |
| ACAGTGTTCAGCGGTCCAAC+CGG | 0.487559 | 1.4:-81173462 | None:intergenic |
| TTACCAATAACGGGCCAGAC+AGG | 0.490285 | 1.4:-81175478 | None:intergenic |
| GGCACGTATTGCACGAGCCC+TGG | 0.490898 | 1.4:-81173285 | None:intergenic |
| GGTCCTAGTACATTAGTAGA+AGG | 0.496207 | 1.4:-81174992 | None:intergenic |
| TCAACCTGAAAGAGAGTCCT+AGG | 0.502593 | 1.4:-81175289 | None:intergenic |
| GGGTCAGTTTGATTATTGCT+TGG | 0.511262 | 1.4:+81173499 | MS.gene99670:CDS |
| CCTGGACCACCGGTTCAGCT+GGG | 0.512697 | 1.4:-81173267 | None:intergenic |
| CATGCTTTGATTTGTAGAAG+TGG | 0.516416 | 1.4:-81173179 | None:intergenic |
| CGCCCGAAGCACCACGAGGA+AGG | 0.518864 | 1.4:-81175060 | None:intergenic |
| TGCCAACGTACCGATTGTAA+TGG | 0.519305 | 1.4:+81175255 | MS.gene99670:CDS |
| ATTTCCACACCCATTACAAT+CGG | 0.523246 | 1.4:-81175265 | None:intergenic |
| CTTCACTGACGGTGTCATCC+AGG | 0.526130 | 1.4:-81173391 | None:intergenic |
| CTCTGACCCGTCTTCACTGA+CGG | 0.526410 | 1.4:-81173402 | None:intergenic |
| ACGAACTAATTATTCGGAGA+TGG | 0.528392 | 1.4:+81175405 | MS.gene99670:CDS |
| GTGCCTTCTACTAATGTACT+AGG | 0.528949 | 1.4:+81174989 | MS.gene99670:CDS |
| ATCCAACAACTCTCCACCTC+CGG | 0.531155 | 1.4:+81173352 | MS.gene99670:CDS |
| TCATCCAGGTCGACCGCGAA+AGG | 0.533115 | 1.4:-81173377 | None:intergenic |
| CCAGCTGAACCGGTGGTCCA+GGG | 0.533135 | 1.4:+81173268 | MS.gene99670:CDS |
| TTGCACGAGCCCTGGACCAC+CGG | 0.533336 | 1.4:-81173277 | None:intergenic |
| AGCAGTGAAGGAAGATGCAT+TGG | 0.539636 | 1.4:+81174901 | MS.gene99670:CDS |
| GCACCACGAGGAAGGCCAGA+AGG | 0.540325 | 1.4:-81175052 | None:intergenic |
| AAACTGCAGCCGTTGTATTG+AGG | 0.546382 | 1.4:+81175664 | MS.gene99670:CDS |
| GGTAAGAACAATATCAGCCT+TGG | 0.556039 | 1.4:-81175170 | None:intergenic |
| TCACTATCAAGCAAGATGAT+GGG | 0.560687 | 1.4:+81175128 | MS.gene99670:CDS |
| TTACCGGGGTTTCCCGAACC+GGG | 0.561422 | 1.4:+81175188 | MS.gene99670:CDS |
| GATGACACCGTCAGTGAAGA+CGG | 0.562579 | 1.4:+81173395 | MS.gene99670:CDS |
| TCTCCGATGATTACTTTCGT+AGG | 0.573677 | 1.4:+81175089 | MS.gene99670:CDS |
| TACCAATAACGGGCCAGACA+GGG | 0.574592 | 1.4:-81175477 | None:intergenic |
| AGGGCTCGTGCAATACGTGC+CGG | 0.584604 | 1.4:+81173287 | MS.gene99670:CDS |
| CTGGACCACCGGTTCAGCTG+GGG | 0.586413 | 1.4:-81173266 | None:intergenic |
| TCAGCCTTGGCAAGATTCTG+TGG | 0.588473 | 1.4:-81175157 | None:intergenic |
| CACACCCAAATGAGAAGCAA+TGG | 0.594750 | 1.4:-81175026 | None:intergenic |
| ATGACACCGTCAGTGAAGAC+GGG | 0.595160 | 1.4:+81173396 | MS.gene99670:CDS |
| CGTACCGATTGTAATGGGTG+TGG | 0.597883 | 1.4:+81175261 | MS.gene99670:CDS |
| CACTATCAAGCAAGATGATG+GGG | 0.598005 | 1.4:+81175129 | MS.gene99670:CDS |
| CGAAAGTAATCATCGGAGAG+TGG | 0.603541 | 1.4:-81175085 | None:intergenic |
| ACCCATTACAATCGGTACGT+TGG | 0.603812 | 1.4:-81175257 | None:intergenic |
| ATCTCCACAGAATCTTGCCA+AGG | 0.605005 | 1.4:+81175153 | MS.gene99670:CDS |
| TCTGGGTTCGAGGACTAGAC+CGG | 0.605618 | 1.4:-81173322 | None:intergenic |
| GATTATTGCTTGGTTGATCG+TGG | 0.606004 | 1.4:+81173509 | MS.gene99670:CDS |
| ACTAGATTGATGATGTAGAG+AGG | 0.606048 | 1.4:+81174858 | MS.gene99670:intron |
| TGAGTCCCCAGCTGAACCGG+TGG | 0.615425 | 1.4:+81173261 | MS.gene99670:CDS |
| AATCCTACGAAAGTAATCAT+CGG | 0.619260 | 1.4:-81175092 | None:intergenic |
| GGAGATGGATTATATTCGAG+AGG | 0.620322 | 1.4:+81175420 | MS.gene99670:CDS |
| ACATTGTGTACTTATGCTTG+CGG | 0.621650 | 1.4:-81175698 | None:intergenic |
| GGCTGATATTGTTCTTACCG+GGG | 0.633144 | 1.4:+81175174 | MS.gene99670:CDS |
| TAATGGGTGTGGAAATGCCT+AGG | 0.639068 | 1.4:+81175272 | MS.gene99670:CDS |
| TGTGCAAGATAAATAGACAA+AGG | 0.639412 | 1.4:-81175217 | None:intergenic |
| CTTCCCGGTTCGGGAAACCC+CGG | 0.642703 | 1.4:-81175191 | None:intergenic |
| GTGCCGGTCGAAAATTGGAC+CGG | 0.644141 | 1.4:+81173303 | MS.gene99670:CDS |
| GTCAGTTACAGGAAAACCCA+AGG | 0.646536 | 1.4:+81173238 | MS.gene99670:CDS |
| AGCATTAACACAGTGTTCAG+CGG | 0.649027 | 1.4:-81173471 | None:intergenic |
| AGGAACTTGAATTTGCAGGA+AGG | 0.656716 | 1.4:+81175440 | MS.gene99670:CDS |
| GAGAAGGCCTGCAAATTATG+GGG | 0.658515 | 1.4:+81174965 | MS.gene99670:CDS |
| TCTCCTTCTGGCCTTCCTCG+TGG | 0.666025 | 1.4:+81175049 | MS.gene99670:CDS |
| TTGTCTCTGATGGAACCGGT+TGG | 0.666341 | 1.4:+81173447 | MS.gene99670:CDS |
| GTGGAAAAGCCTCAATACAA+CGG | 0.674206 | 1.4:-81175673 | None:intergenic |
| TCGACCGCGAAAGGAACCGG+AGG | 0.689587 | 1.4:-81173368 | None:intergenic |
| AAAACATATGAGTACAAACA+GGG | 0.728365 | 1.4:-81173535 | None:intergenic |
| GGAACGCCCGAAGCACCACG+AGG | 0.739441 | 1.4:-81175064 | None:intergenic |
| TGTACTAGGACCCATTACAG+AGG | 0.756735 | 1.4:+81175003 | MS.gene99670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr1.4:81173977-81173996 | MS.gene99670:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr1.4:81173976-81173995 | MS.gene99670:intron | 10.0% |
| !! | AAAAATGGAATTTATTGAAT+TGG | + | chr1.4:81174066-81174085 | MS.gene99670:intron | 15.0% |
| !! | AAAATGGAATTTATTGAATT+GGG | + | chr1.4:81174067-81174086 | MS.gene99670:intron | 15.0% |
| !! | AAAGTGAAATATATTGAATT+GGG | + | chr1.4:81174001-81174020 | MS.gene99670:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr1.4:81173978-81173997 | MS.gene99670:intron | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | chr1.4:81174039-81174058 | MS.gene99670:intron | 15.0% |
| !! | ATTAAATGGAGAAAATTAAA+AGG | - | chr1.4:81174321-81174340 | None:intergenic | 15.0% |
| !! | CAATTATTAAGAGAAATAAA+TGG | + | chr1.4:81174291-81174310 | MS.gene99670:intron | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | chr1.4:81174040-81174059 | MS.gene99670:intron | 15.0% |
| !! | TAAAAATACCCTTAATTAAA+TGG | - | chr1.4:81174335-81174354 | None:intergenic | 15.0% |
| !! | TGAAATTGATCTTATAAAAT+GGG | + | chr1.4:81174384-81174403 | MS.gene99670:intron | 15.0% |
| !! | TTGAAATTGATCTTATAAAA+TGG | + | chr1.4:81174383-81174402 | MS.gene99670:intron | 15.0% |
| !!! | AATTTTCTCCATTTAATTAA+GGG | + | chr1.4:81174324-81174343 | MS.gene99670:intron | 15.0% |
| !!! | TAATTTTCTCCATTTAATTA+AGG | + | chr1.4:81174323-81174342 | MS.gene99670:intron | 15.0% |
| !!! | TTTTCTTAATTCTTATGAAT+TGG | - | chr1.4:81174216-81174235 | None:intergenic | 15.0% |
| !! | AGTTATAAAGGGAAAAAAAA+TGG | + | chr1.4:81174051-81174070 | MS.gene99670:intron | 20.0% |
| !! | CTATGATAAATATCACAATT+TGG | - | chr1.4:81173635-81173654 | None:intergenic | 20.0% |
| !! | GAAAGTGAAATATATTGAAT+TGG | + | chr1.4:81174000-81174019 | MS.gene99670:intron | 20.0% |
| !! | TTTAAACTAGTTACCAATAA+CGG | - | chr1.4:81175491-81175510 | None:intergenic | 20.0% |
| !!! | AAAATAGTCCCTAATTTTTA+CGG | - | chr1.4:81174704-81174723 | None:intergenic | 20.0% |
| !!! | AACATTTTACAAAAATCTGA+GGG | + | chr1.4:81174637-81174656 | MS.gene99670:intron | 20.0% |
| !!! | AATTTTAGTGTTAGAAACTA+TGG | - | chr1.4:81173904-81173923 | None:intergenic | 20.0% |
| !!! | AGTAGTATTGAAAATTGAAA+TGG | + | chr1.4:81174099-81174118 | MS.gene99670:intron | 20.0% |
| !!! | ATAGTAATCTTCATTTTTTG+CGG | + | chr1.4:81173651-81173670 | MS.gene99670:intron | 20.0% |
| !!! | ATGATTTTGATTAGTTCAAA+GGG | + | chr1.4:81175552-81175571 | MS.gene99670:intron | 20.0% |
| !!! | GCAATTTTTTTAACAACATA+CGG | - | chr1.4:81174677-81174696 | None:intergenic | 20.0% |
| !!! | TGAAATGGCTTAATTATTTT+GGG | + | chr1.4:81174114-81174133 | MS.gene99670:intron | 20.0% |
| !!! | TTGAAATGGCTTAATTATTT+TGG | + | chr1.4:81174113-81174132 | MS.gene99670:intron | 20.0% |
| ! | AAAACATATGAGTACAAACA+GGG | - | chr1.4:81173538-81173557 | None:intergenic | 25.0% |
| ! | AAATAAGTTCCTAAAATGTG+TGG | - | chr1.4:81173685-81173704 | None:intergenic | 25.0% |
| ! | AATAGTAACATTTCAATGAG+TGG | - | chr1.4:81173788-81173807 | None:intergenic | 25.0% |
| ! | AGAATCACGAACTAATTATT+CGG | + | chr1.4:81175399-81175418 | MS.gene99670:CDS | 25.0% |
| ! | AGTAAATAACTCAGTTAATC+CGG | + | chr1.4:81174148-81174167 | MS.gene99670:intron | 25.0% |
| ! | ATGTAATAGTATGATCATCA+TGG | + | chr1.4:81173860-81173879 | MS.gene99670:intron | 25.0% |
| ! | ATTGCTAATCCGTAAAAATT+AGG | + | chr1.4:81174692-81174711 | MS.gene99670:intron | 25.0% |
| ! | CTTTGAACTAATCAAAATCA+TGG | - | chr1.4:81175553-81175572 | None:intergenic | 25.0% |
| ! | TAAGTAATAACAATTGTGCA+TGG | + | chr1.4:81173740-81173759 | MS.gene99670:intron | 25.0% |
| ! | TCAATTTATATTGTCTCTGA+TGG | + | chr1.4:81173437-81173456 | MS.gene99670:CDS | 25.0% |
| ! | TGAATAAGAATATTGTTCCA+TGG | - | chr1.4:81174744-81174763 | None:intergenic | 25.0% |
| ! | TTAAACTAGTTACCAATAAC+GGG | - | chr1.4:81175490-81175509 | None:intergenic | 25.0% |
| ! | TTGCTAATCCGTAAAAATTA+GGG | + | chr1.4:81174693-81174712 | MS.gene99670:intron | 25.0% |
| !! | CAACATTTTACAAAAATCTG+AGG | + | chr1.4:81174636-81174655 | MS.gene99670:intron | 25.0% |
| !! | CTCAGATTTTTGTAAAATGT+TGG | - | chr1.4:81174638-81174657 | None:intergenic | 25.0% |
| !! | TATAAATCATGGTGTTTTAC+AGG | + | chr1.4:81175336-81175355 | MS.gene99670:CDS | 25.0% |
| !! | TTTGTACTCATATGTTTTCT+GGG | + | chr1.4:81173540-81173559 | MS.gene99670:CDS | 25.0% |
| !!! | CATGATTTTGATTAGTTCAA+AGG | + | chr1.4:81175551-81175570 | MS.gene99670:intron | 25.0% |
| !!! | TGGGACAATTTTTTTTACAA+AGG | + | chr1.4:81174403-81174422 | MS.gene99670:intron | 25.0% |
| !!! | TTTTTTTAAAAGTCGGTATC+CGG | + | chr1.4:81174527-81174546 | MS.gene99670:intron | 25.0% |
| AAAAACAAGGGCTAAAACTT+TGG | + | chr1.4:81175366-81175385 | MS.gene99670:CDS | 30.0% | |
| AAAAATTGTGCACAACTTGA+CGG | - | chr1.4:81173710-81173729 | None:intergenic | 30.0% | |
| AAAACAAGGGCTAAAACTTT+GGG | + | chr1.4:81175367-81175386 | MS.gene99670:CDS | 30.0% | |
| AATCCTACGAAAGTAATCAT+CGG | - | chr1.4:81175095-81175114 | None:intergenic | 30.0% | |
| ACAGGACATTAGAAAAACAA+GGG | + | chr1.4:81175354-81175373 | MS.gene99670:CDS | 30.0% | |
| CAAAGTGGATAAAGAATGAA+GGG | - | chr1.4:81173579-81173598 | None:intergenic | 30.0% | |
| CTCTTTATTAGTTGATCCTT+GGG | - | chr1.4:81174553-81174572 | None:intergenic | 30.0% | |
| GAAAACATATGAGTACAAAC+AGG | - | chr1.4:81173539-81173558 | None:intergenic | 30.0% | |
| GAATTGGGAATGATGAATAA+AGG | + | chr1.4:81174016-81174035 | MS.gene99670:intron | 30.0% | |
| GACAAGTATTTACAATTCCA+TGG | + | chr1.4:81174724-81174743 | MS.gene99670:intron | 30.0% | |
| GTAAATAACTCAGTTAATCC+GGG | + | chr1.4:81174149-81174168 | MS.gene99670:intron | 30.0% | |
| TACAGGACATTAGAAAAACA+AGG | + | chr1.4:81175353-81175372 | MS.gene99670:CDS | 30.0% | |
| TACATTCAAACTAATGCTGA+TGG | + | chr1.4:81175588-81175607 | MS.gene99670:intron | 30.0% | |
| TCTATTTATCTTGCACAGAA+AGG | + | chr1.4:81175223-81175242 | MS.gene99670:CDS | 30.0% | |
| TCTCTTTATTAGTTGATCCT+TGG | - | chr1.4:81174554-81174573 | None:intergenic | 30.0% | |
| TGTGCAAGATAAATAGACAA+AGG | - | chr1.4:81175220-81175239 | None:intergenic | 30.0% | |
| TTTGGACATAATCGTGAAAT+TGG | - | chr1.4:81173152-81173171 | None:intergenic | 30.0% | |
| ! | GTACATTAACCACACATTTT+AGG | + | chr1.4:81173673-81173692 | MS.gene99670:intron | 30.0% |
| ! | GTTTGTACTCATATGTTTTC+TGG | + | chr1.4:81173539-81173558 | MS.gene99670:CDS | 30.0% |
| ! | TTGTACTCATATGTTTTCTG+GGG | + | chr1.4:81173541-81173560 | MS.gene99670:CDS | 30.0% |
| !! | TTTGGCTTGACTATAAATCA+TGG | + | chr1.4:81175325-81175344 | MS.gene99670:CDS | 30.0% |
| !!! | ACTGTCATTTTACAATGCTA+GGG | + | chr1.4:81174582-81174601 | MS.gene99670:intron | 30.0% |
| AAAATTGTGCACAACTTGAC+GGG | - | chr1.4:81173709-81173728 | None:intergenic | 35.0% | |
| AAGGCTGATATTGTTCTTAC+CGG | + | chr1.4:81175172-81175191 | MS.gene99670:CDS | 35.0% | |
| AATAAGTGTGAAATGAGCCA+AGG | - | chr1.4:81173957-81173976 | None:intergenic | 35.0% | |
| ACATTGTGTACTTATGCTTG+CGG | - | chr1.4:81175701-81175720 | None:intergenic | 35.0% | |
| ACGAACTAATTATTCGGAGA+TGG | + | chr1.4:81175405-81175424 | MS.gene99670:CDS | 35.0% | |
| ATAAGTGTGAAATGAGCCAA+GGG | - | chr1.4:81173956-81173975 | None:intergenic | 35.0% | |
| ATTCTTATGAATTGGCCACA+TGG | - | chr1.4:81174208-81174227 | None:intergenic | 35.0% | |
| ATTTCCACACCCATTACAAT+CGG | - | chr1.4:81175268-81175287 | None:intergenic | 35.0% | |
| GATAATAAAGCAAGCAGTGA+AGG | + | chr1.4:81174889-81174908 | MS.gene99670:CDS | 35.0% | |
| GCAAAGTGGATAAAGAATGA+AGG | - | chr1.4:81173580-81173599 | None:intergenic | 35.0% | |
| TATATTGTCTCTGATGGAAC+CGG | + | chr1.4:81173443-81173462 | MS.gene99670:CDS | 35.0% | |
| TCACTATCAAGCAAGATGAT+GGG | + | chr1.4:81175128-81175147 | MS.gene99670:CDS | 35.0% | |
| TCCCTATTTGTAAAACCATG+TGG | + | chr1.4:81174190-81174209 | MS.gene99670:intron | 35.0% | |
| TCTTGCACAGAAAGGATATA+AGG | + | chr1.4:81175231-81175250 | MS.gene99670:CDS | 35.0% | |
| TTCACTATCAAGCAAGATGA+TGG | + | chr1.4:81175127-81175146 | MS.gene99670:CDS | 35.0% | |
| TTTATTACTACCTTTGTCCC+TGG | - | chr1.4:81174492-81174511 | None:intergenic | 35.0% | |
| ! | ATTGACATTTTACGATGCCA+GGG | + | chr1.4:81174472-81174491 | MS.gene99670:intron | 35.0% |
| ! | GTTGATCCAAAGAAGGTTTT+TGG | + | chr1.4:81175307-81175326 | MS.gene99670:CDS | 35.0% |
| ! | TATTGACATTTTACGATGCC+AGG | + | chr1.4:81174471-81174490 | MS.gene99670:intron | 35.0% |
| ! | TGATGATGTAGAGAGGTTAT+TGG | + | chr1.4:81174865-81174884 | MS.gene99670:CDS | 35.0% |
| !! | ACTAGATTGATGATGTAGAG+AGG | + | chr1.4:81174858-81174877 | MS.gene99670:intron | 35.0% |
| !! | CAAAGGTGTCTTTACATAGA+TGG | + | chr1.4:81174420-81174439 | MS.gene99670:intron | 35.0% |
| !! | CATGCTTTGATTTGTAGAAG+TGG | - | chr1.4:81173182-81173201 | None:intergenic | 35.0% |
| !! | GCCACATGGTTTTACAAATA+GGG | - | chr1.4:81174194-81174213 | None:intergenic | 35.0% |
| !!! | GACTGTCATTTTACAATGCT+AGG | + | chr1.4:81174581-81174600 | MS.gene99670:intron | 35.0% |
| AACAACAACAACAACGACAC+AGG | + | chr1.4:81173209-81173228 | MS.gene99670:CDS | 40.0% | |
| AGCATTAACACAGTGTTCAG+CGG | - | chr1.4:81173474-81173493 | None:intergenic | 40.0% | |
| AGGAACTTGAATTTGCAGGA+AGG | + | chr1.4:81175440-81175459 | MS.gene99670:CDS | 40.0% | |
| AGGCTGATATTGTTCTTACC+GGG | + | chr1.4:81175173-81175192 | MS.gene99670:CDS | 40.0% | |
| AGTTGTTGGATTCTATGGTC+TGG | - | chr1.4:81173343-81173362 | None:intergenic | 40.0% | |
| ATAACTCAGTTAATCCGGGA+CGG | + | chr1.4:81174153-81174172 | MS.gene99670:intron | 40.0% | |
| CACTATCAAGCAAGATGATG+GGG | + | chr1.4:81175129-81175148 | MS.gene99670:CDS | 40.0% | |
| GATTATTGCTTGGTTGATCG+TGG | + | chr1.4:81173509-81173528 | MS.gene99670:CDS | 40.0% | |
| GGGTCAGTTTGATTATTGCT+TGG | + | chr1.4:81173499-81173518 | MS.gene99670:CDS | 40.0% | |
| GGTAAGAACAATATCAGCCT+TGG | - | chr1.4:81175173-81175192 | None:intergenic | 40.0% | |
| GGTCCTAGTACATTAGTAGA+AGG | - | chr1.4:81174995-81175014 | None:intergenic | 40.0% | |
| GTCAAGCCAAAAACCTTCTT+TGG | - | chr1.4:81175316-81175335 | None:intergenic | 40.0% | |
| GTGCCTTCTACTAATGTACT+AGG | + | chr1.4:81174989-81175008 | MS.gene99670:CDS | 40.0% | |
| GTGGAAAAGCCTCAATACAA+CGG | - | chr1.4:81175676-81175695 | None:intergenic | 40.0% | |
| GTTGTTGGATTCTATGGTCT+GGG | - | chr1.4:81173342-81173361 | None:intergenic | 40.0% | |
| TCTCCGATGATTACTTTCGT+AGG | + | chr1.4:81175089-81175108 | MS.gene99670:CDS | 40.0% | |
| TGAGAAGGCCTGCAAATTAT+GGG | + | chr1.4:81174964-81174983 | MS.gene99670:CDS | 40.0% | |
| TGGAGAGTTGTTGGATTCTA+TGG | - | chr1.4:81173348-81173367 | None:intergenic | 40.0% | |
| TGTAGAAGTGGATGTGTGTT+TGG | - | chr1.4:81173170-81173189 | None:intergenic | 40.0% | |
| TTATTAGTTGATCCTTGGGC+CGG | - | chr1.4:81174549-81174568 | None:intergenic | 40.0% | |
| ! | ACACTGTGTTAATGCTGCTT+TGG | + | chr1.4:81173478-81173497 | MS.gene99670:CDS | 40.0% |
| ! | ATTTTCTTCAGCAGCTGAGA+AGG | + | chr1.4:81174949-81174968 | MS.gene99670:CDS | 40.0% |
| ! | TGTCGTTGTTGTTGTTGTTG+CGG | - | chr1.4:81173208-81173227 | None:intergenic | 40.0% |
| !! | AATAGACAAAGGTGTCTTCC+CGG | - | chr1.4:81175209-81175228 | None:intergenic | 40.0% |
| !! | CACTGTGTTAATGCTGCTTT+GGG | + | chr1.4:81173479-81173498 | MS.gene99670:CDS | 40.0% |
| !! | CTTTCAGGTTGATCCAAAGA+AGG | + | chr1.4:81175300-81175319 | MS.gene99670:CDS | 40.0% |
| !! | GGAGATGGATTATATTCGAG+AGG | + | chr1.4:81175420-81175439 | MS.gene99670:CDS | 40.0% |
| !! | GGCCACATGGTTTTACAAAT+AGG | - | chr1.4:81174195-81174214 | None:intergenic | 40.0% |
| AAACTGCAGCCGTTGTATTG+AGG | + | chr1.4:81175664-81175683 | MS.gene99670:CDS | 45.0% | |
| AATGCCTAGGACTCTCTTTC+AGG | + | chr1.4:81175285-81175304 | MS.gene99670:CDS | 45.0% | |
| ACAGGATCCAAGTCAGTTAC+AGG | + | chr1.4:81173227-81173246 | MS.gene99670:CDS | 45.0% | |
| ACCCATTACAATCGGTACGT+TGG | - | chr1.4:81175260-81175279 | None:intergenic | 45.0% | |
| AGAAGCAATGGCCTCTGTAA+TGG | - | chr1.4:81175017-81175036 | None:intergenic | 45.0% | |
| AGAGGCCATTGCTTCTCATT+TGG | + | chr1.4:81175021-81175040 | MS.gene99670:CDS | 45.0% | |
| AGCAGTGAAGGAAGATGCAT+TGG | + | chr1.4:81174901-81174920 | MS.gene99670:CDS | 45.0% | |
| AGCCAAGGGCTCACTTAATT+TGG | - | chr1.4:81173942-81173961 | None:intergenic | 45.0% | |
| AGTTACAGCATTGTGTGGGT+GGG | - | chr1.4:81173609-81173628 | None:intergenic | 45.0% | |
| ATCTCCACAGAATCTTGCCA+AGG | + | chr1.4:81175153-81175172 | MS.gene99670:CDS | 45.0% | |
| CACACCCAAATGAGAAGCAA+TGG | - | chr1.4:81175029-81175048 | None:intergenic | 45.0% | |
| CGAAAGTAATCATCGGAGAG+TGG | - | chr1.4:81175088-81175107 | None:intergenic | 45.0% | |
| CGAGAGGAACTTGAATTTGC+AGG | + | chr1.4:81175436-81175455 | MS.gene99670:CDS | 45.0% | |
| CTGAGAAGGCCTGCAAATTA+TGG | + | chr1.4:81174963-81174982 | MS.gene99670:CDS | 45.0% | |
| GAAGCAATGGCCTCTGTAAT+GGG | - | chr1.4:81175016-81175035 | None:intergenic | 45.0% | |
| GACGAGTTACAGCATTGTGT+GGG | - | chr1.4:81173613-81173632 | None:intergenic | 45.0% | |
| GAGAAGGCCTGCAAATTATG+GGG | + | chr1.4:81174965-81174984 | MS.gene99670:CDS | 45.0% | |
| GAGGCCATTGCTTCTCATTT+GGG | + | chr1.4:81175022-81175041 | MS.gene99670:CDS | 45.0% | |
| GCCAAGGGCTCACTTAATTT+GGG | - | chr1.4:81173941-81173960 | None:intergenic | 45.0% | |
| GGCTGATATTGTTCTTACCG+GGG | + | chr1.4:81175174-81175193 | MS.gene99670:CDS | 45.0% | |
| GTCAGTTACAGGAAAACCCA+AGG | + | chr1.4:81173238-81173257 | MS.gene99670:CDS | 45.0% | |
| TCAACCTGAAAGAGAGTCCT+AGG | - | chr1.4:81175292-81175311 | None:intergenic | 45.0% | |
| TCCCAAATTAAGTGAGCCCT+TGG | + | chr1.4:81173937-81173956 | MS.gene99670:intron | 45.0% | |
| TCTTTGCTCAAAACCCTGTC+TGG | + | chr1.4:81175464-81175483 | MS.gene99670:CDS | 45.0% | |
| TGGGTGGGTATAAAGCAAAG+TGG | - | chr1.4:81173594-81173613 | None:intergenic | 45.0% | |
| TGTACTAGGACCCATTACAG+AGG | + | chr1.4:81175003-81175022 | MS.gene99670:CDS | 45.0% | |
| ! | AATACGTGCCGGTCGAAAAT+TGG | + | chr1.4:81173298-81173317 | MS.gene99670:CDS | 45.0% |
| ! | AGGGCTCACTTAATTTGGGA+CGG | - | chr1.4:81173937-81173956 | None:intergenic | 45.0% |
| ! | CTCACTTAATTTGGGACGGA+GGG | - | chr1.4:81173933-81173952 | None:intergenic | 45.0% |
| ! | GGGTTTTCCTGTAACTGACT+TGG | - | chr1.4:81173237-81173256 | None:intergenic | 45.0% |
| ! | TAATGGGTGTGGAAATGCCT+AGG | + | chr1.4:81175272-81175291 | MS.gene99670:CDS | 45.0% |
| ! | TTTTACGATGCCAGGGACAA+AGG | + | chr1.4:81174479-81174498 | MS.gene99670:intron | 45.0% |
| !! | GCCAACGTACCGATTGTAAT+GGG | + | chr1.4:81175256-81175275 | MS.gene99670:CDS | 45.0% |
| !! | TGCCAACGTACCGATTGTAA+TGG | + | chr1.4:81175255-81175274 | MS.gene99670:CDS | 45.0% |
| !!! | TATTTTATTTTTTTAAAAGT+CGG | + | chr1.4:81174520-81174539 | MS.gene99670:intron | 5.0% |
| ATCCAACAACTCTCCACCTC+CGG | + | chr1.4:81173352-81173371 | MS.gene99670:CDS | 50.0% | |
| ATGACACCGTCAGTGAAGAC+GGG | + | chr1.4:81173396-81173415 | MS.gene99670:CDS | 50.0% | |
| CATTTGGGTGTGTCTCCTTC+TGG | + | chr1.4:81175037-81175056 | MS.gene99670:CDS | 50.0% | |
| GAGTTACAGCATTGTGTGGG+TGG | - | chr1.4:81173610-81173629 | None:intergenic | 50.0% | |
| GATGACACCGTCAGTGAAGA+CGG | + | chr1.4:81173395-81173414 | MS.gene99670:CDS | 50.0% | |
| GATTCTATGGTCTGGGTTCG+AGG | - | chr1.4:81173335-81173354 | None:intergenic | 50.0% | |
| GGACGAGTTACAGCATTGTG+TGG | - | chr1.4:81173614-81173633 | None:intergenic | 50.0% | |
| TCAGCCTTGGCAAGATTCTG+TGG | - | chr1.4:81175160-81175179 | None:intergenic | 50.0% | |
| TGAAGACGGGTCAGAGTTCA+AGG | + | chr1.4:81173409-81173428 | MS.gene99670:CDS | 50.0% | |
| TGTACTTATGCTTGCGGTCG+TGG | - | chr1.4:81175695-81175714 | None:intergenic | 50.0% | |
| TTGTCTCTGATGGAACCGGT+TGG | + | chr1.4:81173447-81173466 | MS.gene99670:CDS | 50.0% | |
| ! | AGACCGGTCCAATTTTCGAC+CGG | - | chr1.4:81173309-81173328 | None:intergenic | 50.0% |
| ! | AGGCACACCCCATAATTTGC+AGG | - | chr1.4:81174975-81174994 | None:intergenic | 50.0% |
| ! | GCTCACTTAATTTGGGACGG+AGG | - | chr1.4:81173934-81173953 | None:intergenic | 50.0% |
| !! | ACAAAGGTGTCTTCCCGGTT+CGG | - | chr1.4:81175204-81175223 | None:intergenic | 50.0% |
| !! | CGTACCGATTGTAATGGGTG+TGG | + | chr1.4:81175261-81175280 | MS.gene99670:CDS | 50.0% |
| !! | TACCAATAACGGGCCAGACA+GGG | - | chr1.4:81175480-81175499 | None:intergenic | 50.0% |
| !! | TTACCAATAACGGGCCAGAC+AGG | - | chr1.4:81175481-81175500 | None:intergenic | 50.0% |
| AAAAGTCGGTATCCGGCCCA+AGG | + | chr1.4:81174534-81174553 | MS.gene99670:intron | 55.0% | |
| AACCCTGTCTGGCCCGTTAT+TGG | + | chr1.4:81175475-81175494 | MS.gene99670:CDS | 55.0% | |
| AACCGGAGGTGGAGAGTTGT+TGG | - | chr1.4:81173357-81173376 | None:intergenic | 55.0% | |
| AAGATGTACTCCCTCCGTCC+CGG | - | chr1.4:81174170-81174189 | None:intergenic | 55.0% | |
| ACAGTGTTCAGCGGTCCAAC+CGG | - | chr1.4:81173465-81173484 | None:intergenic | 55.0% | |
| ACTCAGTTAATCCGGGACGG+AGG | + | chr1.4:81174156-81174175 | MS.gene99670:intron | 55.0% | |
| CTCAGTTAATCCGGGACGGA+GGG | + | chr1.4:81174157-81174176 | MS.gene99670:intron | 55.0% | |
| CTCTGACCCGTCTTCACTGA+CGG | - | chr1.4:81173405-81173424 | None:intergenic | 55.0% | |
| TCTGGGTTCGAGGACTAGAC+CGG | - | chr1.4:81173325-81173344 | None:intergenic | 55.0% | |
| TTCAGCTGGGGACTCACCTT+GGG | - | chr1.4:81173257-81173276 | None:intergenic | 55.0% | |
| ! | GTGCCGGTCGAAAATTGGAC+CGG | + | chr1.4:81173303-81173322 | MS.gene99670:CDS | 55.0% |
| !! | CAAAGGTGTCTTCCCGGTTC+GGG | - | chr1.4:81175203-81175222 | None:intergenic | 55.0% |
| !! | CTTCACTGACGGTGTCATCC+AGG | - | chr1.4:81173394-81173413 | None:intergenic | 55.0% |
| AGGGCTCGTGCAATACGTGC+CGG | + | chr1.4:81173287-81173306 | MS.gene99670:CDS | 60.0% | |
| AGGTCGACCGCGAAAGGAAC+CGG | - | chr1.4:81173374-81173393 | None:intergenic | 60.0% | |
| AGGTGAGTCCCCAGCTGAAC+CGG | + | chr1.4:81173258-81173277 | MS.gene99670:CDS | 60.0% | |
| CTTACCGGGGTTTCCCGAAC+CGG | + | chr1.4:81175187-81175206 | MS.gene99670:CDS | 60.0% | |
| GTTCAGCTGGGGACTCACCT+TGG | - | chr1.4:81173258-81173277 | None:intergenic | 60.0% | |
| TCATCCAGGTCGACCGCGAA+AGG | - | chr1.4:81173380-81173399 | None:intergenic | 60.0% | |
| TCCACCTCCGGTTCCTTTCG+CGG | + | chr1.4:81173364-81173383 | MS.gene99670:CDS | 60.0% | |
| TGGCCTTCCTCGTGGTGCTT+CGG | + | chr1.4:81175057-81175076 | MS.gene99670:CDS | 60.0% | |
| TTACCGGGGTTTCCCGAACC+GGG | + | chr1.4:81175188-81175207 | MS.gene99670:CDS | 60.0% | |
| ! | TCTCCTTCTGGCCTTCCTCG+TGG | + | chr1.4:81175049-81175068 | MS.gene99670:CDS | 60.0% |
| ACCGCGAAAGGAACCGGAGG+TGG | - | chr1.4:81173368-81173387 | None:intergenic | 65.0% | |
| CCAGCTGAACCGGTGGTCCA+GGG | + | chr1.4:81173268-81173287 | MS.gene99670:CDS | 65.0% | |
| GCACCACGAGGAAGGCCAGA+AGG | - | chr1.4:81175055-81175074 | None:intergenic | 65.0% | |
| GGCACGTATTGCACGAGCCC+TGG | - | chr1.4:81173288-81173307 | None:intergenic | 65.0% | |
| GGCCTTCCTCGTGGTGCTTC+GGG | + | chr1.4:81175058-81175077 | MS.gene99670:CDS | 65.0% | |
| GGTTCCTTTCGCGGTCGACC+TGG | + | chr1.4:81173373-81173392 | MS.gene99670:CDS | 65.0% | |
| TCGACCGCGAAAGGAACCGG+AGG | - | chr1.4:81173371-81173390 | None:intergenic | 65.0% | |
| TGAGTCCCCAGCTGAACCGG+TGG | + | chr1.4:81173261-81173280 | MS.gene99670:CDS | 65.0% | |
| TTGCACGAGCCCTGGACCAC+CGG | - | chr1.4:81173280-81173299 | None:intergenic | 65.0% | |
| !! | CCTGGACCACCGGTTCAGCT+GGG | - | chr1.4:81173270-81173289 | None:intergenic | 65.0% |
| !! | CTGGACCACCGGTTCAGCTG+GGG | - | chr1.4:81173269-81173288 | None:intergenic | 65.0% |
| !! | CTTCCCGGTTCGGGAAACCC+CGG | - | chr1.4:81175194-81175213 | None:intergenic | 65.0% |
| CCCAGCTGAACCGGTGGTCC+AGG | + | chr1.4:81173267-81173286 | MS.gene99670:CDS | 70.0% | |
| ! | CGCCCGAAGCACCACGAGGA+AGG | - | chr1.4:81175063-81175082 | None:intergenic | 70.0% |
| ! | GGAACGCCCGAAGCACCACG+AGG | - | chr1.4:81175067-81175086 | None:intergenic | 70.0% |
| !! | CCCTGGACCACCGGTTCAGC+TGG | - | chr1.4:81173271-81173290 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 81173146 | 81175743 | 81173146 | ID=MS.gene99670 |
| chr1.4 | mRNA | 81173146 | 81175743 | 81173146 | ID=MS.gene99670.t1;Parent=MS.gene99670 |
| chr1.4 | exon | 81173146 | 81173562 | 81173146 | ID=MS.gene99670.t1.exon1;Parent=MS.gene99670.t1 |
| chr1.4 | CDS | 81173146 | 81173562 | 81173146 | ID=cds.MS.gene99670.t1;Parent=MS.gene99670.t1 |
| chr1.4 | exon | 81174863 | 81175496 | 81174863 | ID=MS.gene99670.t1.exon2;Parent=MS.gene99670.t1 |
| chr1.4 | CDS | 81174863 | 81175496 | 81174863 | ID=cds.MS.gene99670.t1;Parent=MS.gene99670.t1 |
| chr1.4 | exon | 81175640 | 81175743 | 81175640 | ID=MS.gene99670.t1.exon3;Parent=MS.gene99670.t1 |
| chr1.4 | CDS | 81175640 | 81175743 | 81175640 | ID=cds.MS.gene99670.t1;Parent=MS.gene99670.t1 |
| Gene Sequence |
| Protein sequence |
