Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09923.t1 | XP_003611371.1 | 97.3 | 410 | 11 | 0 | 1 | 410 | 22 | 431 | 1.10E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09923.t1 | O81816 | 33.9 | 401 | 248 | 4 | 21 | 408 | 9 | 405 | 6.3e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09923.t1 | G7JXH2 | 97.3 | 410 | 11 | 0 | 1 | 410 | 22 | 431 | 7.7e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene09923 | 0.803753 | 3.00E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene09923 | 0.821564 | 3.78E-53 | -1.69E-46 |
| MS.gene049356 | MS.gene09923 | 0.879829 | 9.05E-70 | -1.69E-46 |
| MS.gene049369 | MS.gene09923 | 0.884626 | 1.63E-71 | -1.69E-46 |
| MS.gene049396 | MS.gene09923 | 0.883949 | 2.91E-71 | -1.69E-46 |
| MS.gene049488 | MS.gene09923 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene09923 | 0.835131 | 2.01E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene09923 | 0.843946 | 1.02E-58 | -1.69E-46 |
| MS.gene050060 | MS.gene09923 | 0.82163 | 3.65E-53 | -1.69E-46 |
| MS.gene050400 | MS.gene09923 | 0.809499 | 1.84E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene09923 | -0.820133 | 8.06E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene09923 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene09923 | 0.820157 | 7.96E-53 | -1.69E-46 |
| MS.gene050553 | MS.gene09923 | 0.808245 | 3.41E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene09923 | 0.859023 | 5.51E-63 | -1.69E-46 |
| MS.gene050670 | MS.gene09923 | 0.892319 | 1.77E-74 | -1.69E-46 |
| MS.gene050747 | MS.gene09923 | 0.817699 | 2.88E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene09923 | 0.836177 | 1.09E-56 | -1.69E-46 |
| MS.gene050809 | MS.gene09923 | -0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene09923 | 0.814381 | 1.59E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene09923 | 0.801731 | 7.84E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene09923 | 0.812403 | 4.32E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene09923 | 0.810647 | 1.04E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene09923 | 0.842758 | 2.13E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene09923 | 0.883499 | 4.26E-71 | -1.69E-46 |
| MS.gene051360 | MS.gene09923 | 0.820846 | 5.53E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene09923 | 0.809011 | 2.34E-50 | -1.69E-46 |
| MS.gene051521 | MS.gene09923 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene09923 | 0.83741 | 5.29E-57 | -1.69E-46 |
| MS.gene051605 | MS.gene09923 | 0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene09923 | 0.837112 | 6.30E-57 | -1.69E-46 |
| MS.gene051692 | MS.gene09923 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene09923 | 0.841115 | 5.78E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene09923 | 0.837291 | 5.67E-57 | -1.69E-46 |
| MS.gene051874 | MS.gene09923 | 0.83682 | 7.48E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene09923 | 0.819133 | 1.36E-52 | -1.69E-46 |
| MS.gene052134 | MS.gene09923 | 0.848849 | 4.71E-60 | -1.69E-46 |
| MS.gene052135 | MS.gene09923 | 0.850179 | 2.01E-60 | -1.69E-46 |
| MS.gene052136 | MS.gene09923 | 0.859258 | 4.68E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene09923 | 0.88685 | 2.39E-72 | -1.69E-46 |
| MS.gene052253 | MS.gene09923 | 0.83859 | 2.63E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene09923 | 0.853365 | 2.51E-61 | -1.69E-46 |
| MS.gene052322 | MS.gene09923 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene09923 | 0.868411 | 6.66E-66 | -1.69E-46 |
| MS.gene052346 | MS.gene09923 | 0.838373 | 2.99E-57 | -1.69E-46 |
| MS.gene05240 | MS.gene09923 | -0.811715 | 6.09E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene09923 | 0.896728 | 2.79E-76 | -1.69E-46 |
| MS.gene052421 | MS.gene09923 | 0.857679 | 1.38E-62 | -1.69E-46 |
| MS.gene052469 | MS.gene09923 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene09923 | 0.831139 | 1.98E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene09923 | 0.827071 | 1.92E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene09923 | 0.836473 | 9.17E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene09923 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene09923 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene052784 | MS.gene09923 | 0.807903 | 4.03E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene09923 | 0.808207 | 3.47E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene09923 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene09923 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene09923 | 0.804883 | 1.74E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene09923 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene09923 | 0.819983 | 8.72E-53 | -1.69E-46 |
| MS.gene053169 | MS.gene09923 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene09923 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene09923 | 0.815816 | 7.62E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene09923 | 0.891412 | 4.07E-74 | -1.69E-46 |
| MS.gene053557 | MS.gene09923 | 0.82665 | 2.41E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene09923 | 0.836581 | 8.60E-57 | -1.69E-46 |
| MS.gene053758 | MS.gene09923 | 0.854634 | 1.08E-61 | -1.69E-46 |
| MS.gene053824 | MS.gene09923 | 0.819563 | 1.09E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene09923 | 0.895485 | 9.17E-76 | -1.69E-46 |
| MS.gene053916 | MS.gene09923 | 0.83747 | 5.10E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene09923 | 0.839301 | 1.72E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene09923 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene09923 | 0.842691 | 2.21E-58 | -1.69E-46 |
| MS.gene054955 | MS.gene09923 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene09923 | 0.86618 | 3.44E-65 | -1.69E-46 |
| MS.gene055116 | MS.gene09923 | 0.87717 | 7.79E-69 | -1.69E-46 |
| MS.gene055224 | MS.gene09923 | 0.83306 | 6.62E-56 | -1.69E-46 |
| MS.gene055289 | MS.gene09923 | 0.827472 | 1.54E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene09923 | 0.813582 | 2.38E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene09923 | 0.835879 | 1.30E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene09923 | 0.818203 | 2.22E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene09923 | 0.835082 | 2.06E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene09923 | 0.859371 | 4.33E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene09923 | 0.866279 | 3.20E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene09923 | 0.844006 | 9.88E-59 | -1.69E-46 |
| MS.gene055911 | MS.gene09923 | 0.840354 | 9.14E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene09923 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene09923 | 0.835436 | 1.68E-56 | -1.69E-46 |
| MS.gene056233 | MS.gene09923 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene09923 | 0.876709 | 1.13E-68 | -1.69E-46 |
| MS.gene056511 | MS.gene09923 | 0.910664 | 1.46E-82 | -1.69E-46 |
| MS.gene056609 | MS.gene09923 | 0.815698 | 8.09E-52 | -1.69E-46 |
| MS.gene05664 | MS.gene09923 | 0.829569 | 4.78E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene09923 | 0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene09923 | 0.814584 | 1.43E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene09923 | 0.815047 | 1.13E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene09923 | 0.805694 | 1.18E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene09923 | 0.81556 | 8.68E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene09923 | 0.85109 | 1.11E-60 | -1.69E-46 |
| MS.gene057086 | MS.gene09923 | 0.817082 | 3.97E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene09923 | 0.860747 | 1.66E-63 | -1.69E-46 |
| MS.gene057146 | MS.gene09923 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene057310 | MS.gene09923 | 0.800752 | 1.24E-48 | -1.69E-46 |
| MS.gene057331 | MS.gene09923 | 0.81366 | 2.29E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene09923 | 0.81947 | 1.14E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene09923 | 0.83339 | 5.48E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene09923 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene09923 | 0.839344 | 1.68E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene09923 | 0.832354 | 9.92E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene09923 | 0.834423 | 3.02E-56 | -1.69E-46 |
| MS.gene057537 | MS.gene09923 | 0.835941 | 1.25E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene09923 | 0.876976 | 9.09E-69 | -1.69E-46 |
| MS.gene057749 | MS.gene09923 | 0.822836 | 1.91E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene09923 | 0.831441 | 1.67E-55 | -1.69E-46 |
| MS.gene057856 | MS.gene09923 | 0.837836 | 4.11E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene09923 | 0.80275 | 4.84E-49 | -1.69E-46 |
| MS.gene057927 | MS.gene09923 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene09923 | 0.864704 | 1.00E-64 | -1.69E-46 |
| MS.gene058075 | MS.gene09923 | 0.818121 | 2.31E-52 | -1.69E-46 |
| MS.gene058082 | MS.gene09923 | 0.805791 | 1.13E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene09923 | 0.85521 | 7.35E-62 | -1.69E-46 |
| MS.gene058130 | MS.gene09923 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene09923 | 0.84113 | 5.73E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene09923 | 0.838422 | 2.90E-57 | -1.69E-46 |
| MS.gene058448 | MS.gene09923 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene058459 | MS.gene09923 | 0.82186 | 3.23E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene09923 | 0.857611 | 1.45E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene09923 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene09923 | 0.885686 | 6.57E-72 | -1.69E-46 |
| MS.gene058948 | MS.gene09923 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene09923 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene09923 | 0.819931 | 8.96E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene09923 | 0.815998 | 6.94E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene09923 | 0.810747 | 9.89E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene09923 | 0.816836 | 4.50E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene09923 | 0.818806 | 1.62E-52 | -1.69E-46 |
| MS.gene059366 | MS.gene09923 | 0.882355 | 1.12E-70 | -1.69E-46 |
| MS.gene059368 | MS.gene09923 | 0.812671 | 3.77E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene09923 | 0.838997 | 2.06E-57 | -1.69E-46 |
| MS.gene059455 | MS.gene09923 | 0.828707 | 7.74E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene09923 | 0.815765 | 7.82E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene09923 | 0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene09923 | 0.849769 | 2.61E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene09923 | 0.827964 | 1.17E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene09923 | 0.883355 | 4.81E-71 | -1.69E-46 |
| MS.gene059692 | MS.gene09923 | 0.861962 | 7.09E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene09923 | 0.863353 | 2.65E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene09923 | 0.8381 | 3.51E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene09923 | 0.922958 | 4.99E-89 | -1.69E-46 |
| MS.gene059933 | MS.gene09923 | 0.801793 | 7.61E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene09923 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene060372 | MS.gene09923 | 0.844222 | 8.64E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene09923 | 0.856878 | 2.39E-62 | -1.69E-46 |
| MS.gene060804 | MS.gene09923 | 0.837343 | 5.50E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene09923 | 0.849066 | 4.11E-60 | -1.69E-46 |
| MS.gene060835 | MS.gene09923 | 0.864816 | 9.26E-65 | -1.69E-46 |
| MS.gene060837 | MS.gene09923 | 0.883009 | 6.44E-71 | -1.69E-46 |
| MS.gene06097 | MS.gene09923 | 0.852449 | 4.58E-61 | -1.69E-46 |
| MS.gene060981 | MS.gene09923 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene09923 | 0.848008 | 8.06E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene09923 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene09923 | -0.823618 | 1.26E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene09923 | 0.879144 | 1.58E-69 | -1.69E-46 |
| MS.gene061159 | MS.gene09923 | 0.811487 | 6.83E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 124 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATACCTTATTGGAATTCT+TGG | 0.212200 | 5.3:-6160299 | MS.gene09923:CDS |
| AGATTGAGCCTTGATTAATT+TGG | 0.234422 | 5.3:+6161382 | None:intergenic |
| ATGTCTAAACAGATTGTAAT+AGG | 0.240740 | 5.3:-6159988 | MS.gene09923:intron |
| CGATTACAACATGTTCCTTT+TGG | 0.248040 | 5.3:+6161354 | None:intergenic |
| TCCAAATGGGGATACCTTAT+TGG | 0.254372 | 5.3:-6160308 | MS.gene09923:CDS |
| TGCCCAAGATTTGGAGTCAT+TGG | 0.307226 | 5.3:+6159465 | None:intergenic |
| CATGCTCCTTGCCCAAGATT+TGG | 0.307845 | 5.3:+6159456 | None:intergenic |
| TTCATTATGTTTAGTAGCTC+TGG | 0.317013 | 5.3:+6159603 | None:intergenic |
| ATCCTCTTCTTTGAAATTGA+AGG | 0.328744 | 5.3:+6160916 | None:intergenic |
| TAGACTTTGGTTGGAGAAAC+AGG | 0.332821 | 5.3:+6159802 | None:intergenic |
| CACCCAATGACTCCAAATCT+TGG | 0.340691 | 5.3:-6159468 | MS.gene09923:CDS |
| AGTGGAGAGGAGGGTACTTT+TGG | 0.353165 | 5.3:-6160401 | MS.gene09923:CDS |
| TCCAATAAGGTATCCCCATT+TGG | 0.359215 | 5.3:+6160307 | None:intergenic |
| ATCGTGGGTGGTGGCATTGC+AGG | 0.363319 | 5.3:-6161335 | MS.gene09923:CDS |
| TCTCCACTGCACGCACCTCT+TGG | 0.364886 | 5.3:+6160416 | None:intergenic |
| GCCCAAGATTTGGAGTCATT+GGG | 0.380043 | 5.3:+6159466 | None:intergenic |
| CCCATCCAAGAATTCCAATA+AGG | 0.383303 | 5.3:+6160294 | None:intergenic |
| CTAAGGATCTAGTGGAAAAC+TGG | 0.384760 | 5.3:-6159629 | MS.gene09923:CDS |
| GTGAATTACATCTACGGAAA+AGG | 0.386225 | 5.3:-6159844 | MS.gene09923:CDS |
| AGTAAGGCTTGGTCCATTGC+TGG | 0.401844 | 5.3:-6159217 | MS.gene09923:CDS |
| TGGTGTTCGGTCTCTTGTGC+TGG | 0.403207 | 5.3:-6161201 | MS.gene09923:CDS |
| GAATTCTCAGGCTTGGTGTT+CGG | 0.408757 | 5.3:-6161214 | MS.gene09923:intron |
| GAAGAATATTGAATGCTATC+AGG | 0.408814 | 5.3:+6160355 | None:intergenic |
| ATAGCATTCAATATTCTTCA+CGG | 0.412492 | 5.3:-6160351 | MS.gene09923:CDS |
| CACTCCACCCATTCTTGAAA+AGG | 0.414267 | 5.3:+6161138 | None:intergenic |
| ATGTTTGCCCGTATGGTTAG+TGG | 0.417439 | 5.3:+6159312 | None:intergenic |
| CGTTGGTGGATCGATGGCTT+TGG | 0.417946 | 5.3:-6159548 | MS.gene09923:CDS |
| AAAAGGTTGTCCATCTGAAT+AGG | 0.421657 | 5.3:+6159876 | None:intergenic |
| ACGGGCAAACATTGTGGGTT+CGG | 0.430334 | 5.3:-6159301 | MS.gene09923:CDS |
| ACCCACAATGTTTGCCCGTA+TGG | 0.441085 | 5.3:+6159305 | None:intergenic |
| TGTGGGTTCGGCTTTGCAAT+GGG | 0.445153 | 5.3:-6159289 | MS.gene09923:CDS |
| TTGTCATACCTAAGCTAGTA+AGG | 0.446445 | 5.3:-6159233 | MS.gene09923:CDS |
| ATTTGGAGTCATTGGGTGCC+AGG | 0.447196 | 5.3:+6159473 | None:intergenic |
| AAGATTGAACCAAGTCCAAA+TGG | 0.447760 | 5.3:-6160322 | MS.gene09923:CDS |
| ACTCAATATTTAGAAATTCA+AGG | 0.453429 | 5.3:-6161080 | MS.gene09923:CDS |
| AAGGTATCCCCATTTGGACT+TGG | 0.464282 | 5.3:+6160313 | None:intergenic |
| ACAACTCTACCTGCAGAAAC+AGG | 0.465698 | 5.3:+6159510 | None:intergenic |
| TAATTCACCCGTGCTTCAAA+AGG | 0.468928 | 5.3:+6159859 | None:intergenic |
| ACCTTATTGGAATTCTTGGA+TGG | 0.470171 | 5.3:-6160295 | MS.gene09923:CDS |
| TTTCTCCAACCAAAGTCTAC+TGG | 0.470585 | 5.3:-6159798 | MS.gene09923:CDS |
| CAACTGCTCTATCCCTTCAC+AGG | 0.470796 | 5.3:-6161307 | MS.gene09923:intron |
| TGTCTAAACAGATTGTAATA+GGG | 0.475468 | 5.3:-6159987 | MS.gene09923:intron |
| TGCCTTCAATTTCAAAGAAG+AGG | 0.476217 | 5.3:-6160918 | MS.gene09923:CDS |
| TGCTTCAACAGTTCATCTCC+AGG | 0.477142 | 5.3:-6159769 | MS.gene09923:intron |
| GGCTCAATCTTCAGTCCAAA+AGG | 0.477210 | 5.3:-6161369 | MS.gene09923:CDS |
| GGACCAAGCCTTACTAGCTT+AGG | 0.477240 | 5.3:+6159225 | None:intergenic |
| CACCGGATGACACTATAATC+AGG | 0.478910 | 5.3:-6159575 | MS.gene09923:CDS |
| TGAATTACATCTACGGAAAA+GGG | 0.482581 | 5.3:-6159843 | MS.gene09923:CDS |
| ACCCAATGACTCCAAATCTT+GGG | 0.482693 | 5.3:-6159467 | MS.gene09923:CDS |
| TGGAGTGTACTTGATTCAAT+TGG | 0.482722 | 5.3:-6161122 | MS.gene09923:CDS |
| ACCATACGGGCAAACATTGT+GGG | 0.483763 | 5.3:-6159306 | MS.gene09923:CDS |
| AGGTGCGTGCAGTGGAGAGG+AGG | 0.485424 | 5.3:-6160411 | MS.gene09923:CDS |
| GCTTGCTTCTTTAGCACCGA+TGG | 0.486635 | 5.3:+6159651 | None:intergenic |
| CTTCTTTAGCACCGATGGCT+CGG | 0.487707 | 5.3:+6159656 | None:intergenic |
| ACCCGCTGGTGTGTTCTGTT+AGG | 0.488168 | 5.3:-6159263 | MS.gene09923:CDS |
| AGATTGAACCAAGTCCAAAT+GGG | 0.490772 | 5.3:-6160321 | MS.gene09923:CDS |
| GCACAATGACCAACAAACTT+TGG | 0.492071 | 5.3:+6159916 | None:intergenic |
| CAGAAGTTCCAAATTAATCA+AGG | 0.492791 | 5.3:-6161390 | MS.gene09923:CDS |
| GAGAATATGGCAATGAAAGA+TGG | 0.497368 | 5.3:-6159347 | MS.gene09923:CDS |
| CATTCAATATTCTTCACGGT+TGG | 0.499725 | 5.3:-6160347 | MS.gene09923:CDS |
| TTGTGGGTTCGGCTTTGCAA+TGG | 0.501115 | 5.3:-6159290 | MS.gene09923:CDS |
| GAAACAGGTGGACTTATTGA+TGG | 0.501429 | 5.3:+6159525 | None:intergenic |
| GCAGATAAACCAGTAGACTT+TGG | 0.503117 | 5.3:+6159789 | None:intergenic |
| CAGTCAGAGTCACTTCGAAC+AGG | 0.503637 | 5.3:-6161176 | MS.gene09923:CDS |
| CTCAATATTTAGAAATTCAA+GGG | 0.504248 | 5.3:-6161079 | MS.gene09923:intron |
| ATAAACCAGTAGACTTTGGT+TGG | 0.504282 | 5.3:+6159793 | None:intergenic |
| AACCATACGGGCAAACATTG+TGG | 0.523320 | 5.3:-6159307 | MS.gene09923:CDS |
| TTTGCAATGGGACAACCCGC+TGG | 0.523400 | 5.3:-6159277 | MS.gene09923:CDS |
| TATAATCAGGACTCCGTTGG+TGG | 0.527265 | 5.3:-6159562 | MS.gene09923:CDS |
| ATAAGTCCACCTGTTTCTGC+AGG | 0.528684 | 5.3:-6159519 | MS.gene09923:CDS |
| GCATATTTCCACTAACCATA+CGG | 0.529804 | 5.3:-6159320 | MS.gene09923:CDS |
| GTCCTGATTATAGTGTCATC+CGG | 0.533366 | 5.3:+6159573 | None:intergenic |
| TCCTAACAGAACACACCAGC+GGG | 0.539378 | 5.3:+6159262 | None:intergenic |
| CCTTATTGGAATTCTTGGAT+GGG | 0.539919 | 5.3:-6160294 | MS.gene09923:CDS |
| AGGAGCATGTTGTGCTCTTG+AGG | 0.544378 | 5.3:-6159442 | MS.gene09923:CDS |
| GCAGGTAGAGTTGTACTCGT+TGG | 0.545159 | 5.3:-6159501 | MS.gene09923:CDS |
| GAAGCAAGCTAAGGATCTAG+TGG | 0.546205 | 5.3:-6159637 | MS.gene09923:CDS |
| TTGTACTCGTTGGAGACGCC+TGG | 0.546377 | 5.3:-6159491 | MS.gene09923:CDS |
| TCCTAAAATAACCGAGCCAT+CGG | 0.546688 | 5.3:-6159667 | MS.gene09923:CDS |
| AAGAGGTGCGTGCAGTGGAG+AGG | 0.550530 | 5.3:-6160414 | MS.gene09923:CDS |
| ACTCCACCCATTCTTGAAAA+GGG | 0.552204 | 5.3:+6161139 | None:intergenic |
| CAGCCAAGAGGTGCGTGCAG+TGG | 0.558479 | 5.3:-6160419 | MS.gene09923:CDS |
| ATACCTAAGCTAGTAAGGCT+TGG | 0.561443 | 5.3:-6159228 | MS.gene09923:CDS |
| GGACTCCGTTGGTGGATCGA+TGG | 0.562109 | 5.3:-6159554 | MS.gene09923:CDS |
| AAATTAGTGTGCTCCAGCAA+TGG | 0.570234 | 5.3:+6159204 | None:intergenic |
| AAGGAACATGTTGTAATCGT+GGG | 0.573031 | 5.3:-6161350 | MS.gene09923:CDS |
| AAAGGAACATGTTGTAATCG+TGG | 0.573135 | 5.3:-6161351 | MS.gene09923:CDS |
| GGACTTGCCTCCTATTCAGA+TGG | 0.575892 | 5.3:-6159886 | MS.gene09923:CDS |
| GCACGGGTGAATTACATCTA+CGG | 0.577218 | 5.3:-6159850 | MS.gene09923:CDS |
| TGGGTCTAAACTAGTTGCAA+AGG | 0.577733 | 5.3:-6160275 | MS.gene09923:intron |
| ATTTCAAAGAAGAGGATGAA+AGG | 0.580176 | 5.3:-6160910 | MS.gene09923:intron |
| CACTATAATCAGGACTCCGT+TGG | 0.584665 | 5.3:-6159565 | MS.gene09923:CDS |
| ATTATGTTTAGTAGCTCTGG+AGG | 0.585207 | 5.3:+6159606 | None:intergenic |
| AATCCCATCCACTTAGCTAT+CGG | 0.586271 | 5.3:+6159946 | None:intergenic |
| GGTGCGTGCAGTGGAGAGGA+GGG | 0.589579 | 5.3:-6160410 | MS.gene09923:CDS |
| ATCACCGATAGCTAAGTGGA+TGG | 0.589651 | 5.3:-6159950 | MS.gene09923:CDS |
| CATATTTCCACTAACCATAC+GGG | 0.594920 | 5.3:-6159319 | MS.gene09923:CDS |
| ATGACTCCAAATCTTGGGCA+AGG | 0.595031 | 5.3:-6159462 | MS.gene09923:CDS |
| AGGTTGTCCATCTGAATAGG+AGG | 0.597237 | 5.3:+6159879 | None:intergenic |
| TACGGAAAAGGGTTACGCGC+AGG | 0.600680 | 5.3:-6159832 | MS.gene09923:CDS |
| GTTGGTCATTGTGCTTTCCG+TGG | 0.600904 | 5.3:-6159907 | MS.gene09923:CDS |
| CATGTTGTAATCGTGGGTGG+TGG | 0.604156 | 5.3:-6161344 | MS.gene09923:CDS |
| CAGATTGTAATAGGGTGCGA+CGG | 0.604784 | 5.3:-6159979 | MS.gene09923:CDS |
| AAACATAATGAATTCTACAC+CGG | 0.605859 | 5.3:-6159592 | MS.gene09923:CDS |
| TTGTGCTCTTGAGGATGCAG+TGG | 0.611787 | 5.3:-6159433 | MS.gene09923:CDS |
| TTCGATCACCGATAGCTAAG+TGG | 0.615756 | 5.3:-6159954 | MS.gene09923:CDS |
| TCAGAGTCACTTCGAACAGG+TGG | 0.621486 | 5.3:-6161173 | MS.gene09923:CDS |
| CTAGAGTTGAAACCTGTGAA+GGG | 0.625644 | 5.3:+6161295 | None:intergenic |
| TCACCGATAGCTAAGTGGAT+GGG | 0.628133 | 5.3:-6159949 | MS.gene09923:CDS |
| GGTGCTAAAGAAGCAAGCTA+AGG | 0.629803 | 5.3:-6159646 | MS.gene09923:CDS |
| GCTAGAGTTGAAACCTGTGA+AGG | 0.639052 | 5.3:+6161294 | None:intergenic |
| CAAAGCCATCGATCCACCAA+CGG | 0.639408 | 5.3:+6159549 | None:intergenic |
| GATTGAACCAAGTCCAAATG+GGG | 0.644561 | 5.3:-6160320 | MS.gene09923:CDS |
| ACGGATATTGTGCAGCCAAG+AGG | 0.645003 | 5.3:-6160431 | MS.gene09923:intron |
| CTGAATAGGAGGCAAGTCCA+CGG | 0.650582 | 5.3:+6159890 | None:intergenic |
| ATGGTGGTGAAGTCTGAGGA+TGG | 0.653495 | 5.3:-6160953 | MS.gene09923:CDS |
| GAATATTGAATGCTATCAGG+AGG | 0.654073 | 5.3:+6160358 | None:intergenic |
| GAAGGGATAGAGCAGTTGCA+AGG | 0.666482 | 5.3:+6161312 | None:intergenic |
| ATATCAGCTGTACAGGATGG+TGG | 0.671683 | 5.3:-6160969 | MS.gene09923:intron |
| ACTCTACCTGCAGAAACAGG+TGG | 0.672264 | 5.3:+6159513 | None:intergenic |
| CAGGATGGTGGTGAAGTCTG+AGG | 0.679338 | 5.3:-6160957 | MS.gene09923:CDS |
| TTCCTAACAGAACACACCAG+CGG | 0.695061 | 5.3:+6159261 | None:intergenic |
| ATGGTTAGTGGAAATATGCG+CGG | 0.713230 | 5.3:+6159324 | None:intergenic |
| GAACATGTTGTAATCGTGGG+TGG | 0.726429 | 5.3:-6161347 | MS.gene09923:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATGAAATGCATAA+CGG | - | chr5.3:6160131-6160150 | MS.gene09923:intron | 15.0% |
| !! | AGTTATTATCAAAGTTATTA+TGG | + | chr5.3:6159715-6159734 | None:intergenic | 15.0% |
| !! | TTGTAAATCTAATAAAATCA+TGG | + | chr5.3:6160382-6160401 | None:intergenic | 15.0% |
| !!! | TTTTATTAGATTTACAAACT+TGG | - | chr5.3:6160385-6160404 | MS.gene09923:CDS | 15.0% |
| !! | ACTCAATATTTAGAAATTCA+AGG | - | chr5.3:6159501-6159520 | MS.gene09923:CDS | 20.0% |
| !! | ATTAAGAAGTGAAAAATTGT+GGG | - | chr5.3:6160011-6160030 | MS.gene09923:intron | 20.0% |
| !! | CTCAATATTTAGAAATTCAA+GGG | - | chr5.3:6159502-6159521 | MS.gene09923:CDS | 20.0% |
| !! | TATTAAGAAGTGAAAAATTG+TGG | - | chr5.3:6160010-6160029 | MS.gene09923:intron | 20.0% |
| !! | TTTCGTTGTTAAATTATTGT+TGG | - | chr5.3:6160105-6160124 | MS.gene09923:intron | 20.0% |
| !!! | TCAATTTGTTAACACTTTTT+AGG | + | chr5.3:6160569-6160588 | None:intergenic | 20.0% |
| !!! | TTTTCACTTCTTAATACAAT+GGG | + | chr5.3:6160006-6160025 | None:intergenic | 20.0% |
| !!! | TTTTTCACTTCTTAATACAA+TGG | + | chr5.3:6160007-6160026 | None:intergenic | 20.0% |
| ! | AAACATAATGAATTCTACAC+CGG | - | chr5.3:6160989-6161008 | MS.gene09923:intron | 25.0% |
| ! | AATATATGCATTGTGCAATA+AGG | + | chr5.3:6159569-6159588 | None:intergenic | 25.0% |
| ! | ATAGCATTCAATATTCTTCA+CGG | - | chr5.3:6160230-6160249 | MS.gene09923:intron | 25.0% |
| ! | ATGTCTAAACAGATTGTAAT+AGG | - | chr5.3:6160593-6160612 | MS.gene09923:intron | 25.0% |
| ! | ATTGTAATTTATGGTGTGTT+TGG | - | chr5.3:6160335-6160354 | MS.gene09923:CDS | 25.0% |
| ! | GAATTATGTTTAAACACAGT+CGG | + | chr5.3:6160435-6160454 | None:intergenic | 25.0% |
| ! | GTTACTAATAAGTCCATATA+TGG | - | chr5.3:6160837-6160856 | MS.gene09923:intron | 25.0% |
| ! | TATTAATCTAACCACATGAT+TGG | - | chr5.3:6160475-6160494 | MS.gene09923:intron | 25.0% |
| ! | TATTACAATCTGTTTAGACA+TGG | + | chr5.3:6160594-6160613 | None:intergenic | 25.0% |
| ! | TCAAATGATAAAATGATGCA+TGG | + | chr5.3:6160058-6160077 | None:intergenic | 25.0% |
| ! | TCAGGTAATTTAACCATATA+TGG | + | chr5.3:6160853-6160872 | None:intergenic | 25.0% |
| ! | TGAAAAATAGTTGAGTTCAA+TGG | - | chr5.3:6160887-6160906 | MS.gene09923:intron | 25.0% |
| ! | TGTCTAAACAGATTGTAATA+GGG | - | chr5.3:6160594-6160613 | MS.gene09923:intron | 25.0% |
| ! | TTATCCACACATCATATATA+TGG | + | chr5.3:6159893-6159912 | None:intergenic | 25.0% |
| ! | TTCATATGAACAATAAACTC+AGG | + | chr5.3:6160871-6160890 | None:intergenic | 25.0% |
| !! | AGGTTAGTCATTGTAATTTA+TGG | - | chr5.3:6160326-6160345 | MS.gene09923:CDS | 25.0% |
| !! | ATCTTAGATATTTTCACTAC+TGG | - | chr5.3:6159924-6159943 | MS.gene09923:CDS | 25.0% |
| !!! | ATCATTTGAGTTGTACTAAT+GGG | - | chr5.3:6160069-6160088 | MS.gene09923:intron | 25.0% |
| !!! | TATCATTTGAGTTGTACTAA+TGG | - | chr5.3:6160068-6160087 | MS.gene09923:intron | 25.0% |
| AACTTGGTTGACAAAACATT+TGG | - | chr5.3:6160401-6160420 | MS.gene09923:CDS | 30.0% | |
| AGATTGAGCCTTGATTAATT+TGG | + | chr5.3:6159202-6159221 | None:intergenic | 30.0% | |
| ATAAAATGATGCATGGACAT+CGG | + | chr5.3:6160051-6160070 | None:intergenic | 30.0% | |
| ATTTCAAAGAAGAGGATGAA+AGG | - | chr5.3:6159671-6159690 | MS.gene09923:CDS | 30.0% | |
| CAGAAGTTCCAAATTAATCA+AGG | - | chr5.3:6159191-6159210 | MS.gene09923:CDS | 30.0% | |
| GAAGAATATTGAATGCTATC+AGG | + | chr5.3:6160229-6160248 | None:intergenic | 30.0% | |
| GATAGTGCAGTATTTGATAT+TGG | - | chr5.3:6159831-6159850 | MS.gene09923:CDS | 30.0% | |
| TGAATTACATCTACGGAAAA+GGG | - | chr5.3:6160738-6160757 | MS.gene09923:intron | 30.0% | |
| TTCATTATGTTTAGTAGCTC+TGG | + | chr5.3:6160981-6161000 | None:intergenic | 30.0% | |
| ! | ATTTGATATTGGTGCTTGAT+AGG | - | chr5.3:6159842-6159861 | MS.gene09923:CDS | 30.0% |
| ! | TTTTCTTCTTCCTACCAAAT+AGG | - | chr5.3:6159962-6159981 | MS.gene09923:CDS | 30.0% |
| ! | TTTTGTGCAGTATGTTTTCA+GGG | + | chr5.3:6160507-6160526 | None:intergenic | 30.0% |
| !! | ATCCTCTTCTTTGAAATTGA+AGG | + | chr5.3:6159668-6159687 | None:intergenic | 30.0% |
| !!! | TATATGGATGGACCTTTTTT+TGG | + | chr5.3:6159877-6159896 | None:intergenic | 30.0% |
| AAAAGGTTGTCCATCTGAAT+AGG | + | chr5.3:6160708-6160727 | None:intergenic | 35.0% | |
| AAAGGAACATGTTGTAATCG+TGG | - | chr5.3:6159230-6159249 | MS.gene09923:CDS | 35.0% | |
| AAATAGTTGAGTTCAATGGC+AGG | - | chr5.3:6160891-6160910 | MS.gene09923:intron | 35.0% | |
| AAGATTGAACCAAGTCCAAA+TGG | - | chr5.3:6160259-6160278 | MS.gene09923:intron | 35.0% | |
| AAGGAACATGTTGTAATCGT+GGG | - | chr5.3:6159231-6159250 | MS.gene09923:CDS | 35.0% | |
| ACCTTATTGGAATTCTTGGA+TGG | - | chr5.3:6160286-6160305 | MS.gene09923:CDS | 35.0% | |
| ACTTCTGACTGAAAATGTGT+TGG | - | chr5.3:6159748-6159767 | MS.gene09923:intron | 35.0% | |
| AGATTGAACCAAGTCCAAAT+GGG | - | chr5.3:6160260-6160279 | MS.gene09923:intron | 35.0% | |
| ATAAACCAGTAGACTTTGGT+TGG | + | chr5.3:6160791-6160810 | None:intergenic | 35.0% | |
| ATAATATCAGCTGTACAGGA+TGG | - | chr5.3:6159609-6159628 | MS.gene09923:CDS | 35.0% | |
| CATATTTCCACTAACCATAC+GGG | - | chr5.3:6161262-6161281 | MS.gene09923:intron | 35.0% | |
| CATTCAATATTCTTCACGGT+TGG | - | chr5.3:6160234-6160253 | MS.gene09923:intron | 35.0% | |
| CCACACATCATATATATGGA+TGG | + | chr5.3:6159889-6159908 | None:intergenic | 35.0% | |
| CCATCCATATATATGATGTG+TGG | - | chr5.3:6159886-6159905 | MS.gene09923:CDS | 35.0% | |
| CCTTATTGGAATTCTTGGAT+GGG | - | chr5.3:6160287-6160306 | MS.gene09923:CDS | 35.0% | |
| CTGAAAACATACTGCACAAA+AGG | - | chr5.3:6160506-6160525 | MS.gene09923:intron | 35.0% | |
| GAATATTGAATGCTATCAGG+AGG | + | chr5.3:6160226-6160245 | None:intergenic | 35.0% | |
| GAGAATATGGCAATGAAAGA+TGG | - | chr5.3:6161234-6161253 | MS.gene09923:intron | 35.0% | |
| GCATATTTCCACTAACCATA+CGG | - | chr5.3:6161261-6161280 | MS.gene09923:intron | 35.0% | |
| GGATACCTTATTGGAATTCT+TGG | - | chr5.3:6160282-6160301 | MS.gene09923:CDS | 35.0% | |
| GTGAATTACATCTACGGAAA+AGG | - | chr5.3:6160737-6160756 | MS.gene09923:intron | 35.0% | |
| GTTCATAATATCAGCTGTAC+AGG | - | chr5.3:6159605-6159624 | MS.gene09923:CDS | 35.0% | |
| TAAAATGATGCATGGACATC+GGG | + | chr5.3:6160050-6160069 | None:intergenic | 35.0% | |
| TAGGACTAAAGCTTCAGAAT+TGG | + | chr5.3:6160550-6160569 | None:intergenic | 35.0% | |
| TGCCTTCAATTTCAAAGAAG+AGG | - | chr5.3:6159663-6159682 | MS.gene09923:CDS | 35.0% | |
| TGGACTTATTAGTAACAACC+TGG | + | chr5.3:6160833-6160852 | None:intergenic | 35.0% | |
| TGGAGTGTACTTGATTCAAT+TGG | - | chr5.3:6159459-6159478 | MS.gene09923:CDS | 35.0% | |
| TTGTACTAATGGGACGTTAT+TGG | - | chr5.3:6160079-6160098 | MS.gene09923:intron | 35.0% | |
| TTGTCATACCTAAGCTAGTA+AGG | - | chr5.3:6161348-6161367 | MS.gene09923:CDS | 35.0% | |
| ! | CGATTACAACATGTTCCTTT+TGG | + | chr5.3:6159230-6159249 | None:intergenic | 35.0% |
| ! | CTTTTGTGCAGTATGTTTTC+AGG | + | chr5.3:6160508-6160527 | None:intergenic | 35.0% |
| ! | TTTTCTGAGCCAAAGTTTGT+TGG | - | chr5.3:6160656-6160675 | MS.gene09923:intron | 35.0% |
| !! | ACATTTTCAGTCAGAAGTGT+TGG | + | chr5.3:6159746-6159765 | None:intergenic | 35.0% |
| !! | ATTATGTTTAGTAGCTCTGG+AGG | + | chr5.3:6160978-6160997 | None:intergenic | 35.0% |
| !! | GAAGACGCTTTTAGAGAATA+TGG | - | chr5.3:6161221-6161240 | MS.gene09923:intron | 35.0% |
| AAAATGATGCATGGACATCG+GGG | + | chr5.3:6160049-6160068 | None:intergenic | 40.0% | |
| AAATTAGTGTGCTCCAGCAA+TGG | + | chr5.3:6161380-6161399 | None:intergenic | 40.0% | |
| AATCCCATCCACTTAGCTAT+CGG | + | chr5.3:6160638-6160657 | None:intergenic | 40.0% | |
| ACCCAATGACTCCAAATCTT+GGG | - | chr5.3:6161114-6161133 | MS.gene09923:CDS | 40.0% | |
| ACTCCACCCATTCTTGAAAA+GGG | + | chr5.3:6159445-6159464 | None:intergenic | 40.0% | |
| ATACCTAAGCTAGTAAGGCT+TGG | - | chr5.3:6161353-6161372 | MS.gene09923:CDS | 40.0% | |
| ATGGTTAGTGGAAATATGCG+CGG | + | chr5.3:6161260-6161279 | None:intergenic | 40.0% | |
| CCCATCCAAGAATTCCAATA+AGG | + | chr5.3:6160290-6160309 | None:intergenic | 40.0% | |
| CTAAGGATCTAGTGGAAAAC+TGG | - | chr5.3:6160952-6160971 | MS.gene09923:CDS | 40.0% | |
| CTAGAGTTGAAACCTGTGAA+GGG | + | chr5.3:6159289-6159308 | None:intergenic | 40.0% | |
| GATTGAACCAAGTCCAAATG+GGG | - | chr5.3:6160261-6160280 | MS.gene09923:intron | 40.0% | |
| GCACAATGACCAACAAACTT+TGG | + | chr5.3:6160668-6160687 | None:intergenic | 40.0% | |
| GCAGATAAACCAGTAGACTT+TGG | + | chr5.3:6160795-6160814 | None:intergenic | 40.0% | |
| GTCCTGATTATAGTGTCATC+CGG | + | chr5.3:6161011-6161030 | None:intergenic | 40.0% | |
| TAATTCACCCGTGCTTCAAA+AGG | + | chr5.3:6160725-6160744 | None:intergenic | 40.0% | |
| TAGACTTTGGTTGGAGAAAC+AGG | + | chr5.3:6160782-6160801 | None:intergenic | 40.0% | |
| TATATTAGCTGAGCTTGAGC+TGG | - | chr5.3:6159583-6159602 | MS.gene09923:CDS | 40.0% | |
| TCCAAATGGGGATACCTTAT+TGG | - | chr5.3:6160273-6160292 | MS.gene09923:intron | 40.0% | |
| TCCTAAAATAACCGAGCCAT+CGG | - | chr5.3:6160914-6160933 | MS.gene09923:CDS | 40.0% | |
| TGGGTCTAAACTAGTTGCAA+AGG | - | chr5.3:6160306-6160325 | MS.gene09923:CDS | 40.0% | |
| TTGTGTTGAATTCTCAGGCT+TGG | - | chr5.3:6159360-6159379 | MS.gene09923:CDS | 40.0% | |
| TTTCTCCAACCAAAGTCTAC+TGG | - | chr5.3:6160783-6160802 | MS.gene09923:intron | 40.0% | |
| ! | CTCGTGTTGGTATCAAACAT+TGG | + | chr5.3:6159787-6159806 | None:intergenic | 40.0% |
| ! | GAAACAGGTGGACTTATTGA+TGG | + | chr5.3:6161059-6161078 | None:intergenic | 40.0% |
| ! | TCCAATAAGGTATCCCCATT+TGG | + | chr5.3:6160277-6160296 | None:intergenic | 40.0% |
| !! | CACTCACCCTTTTCAAGAAT+GGG | - | chr5.3:6159436-6159455 | MS.gene09923:CDS | 40.0% |
| !! | TCACTCACCCTTTTCAAGAA+TGG | - | chr5.3:6159435-6159454 | MS.gene09923:CDS | 40.0% |
| !!! | ATGGACAACCTTTTGAAGCA+CGG | - | chr5.3:6160714-6160733 | MS.gene09923:intron | 40.0% |
| !!! | GAGGGTACTTTTGGAAACTT+TGG | - | chr5.3:6160189-6160208 | MS.gene09923:intron | 40.0% |
| !!! | TGGATGGACCTTTTTTTGGT+AGG | + | chr5.3:6159873-6159892 | None:intergenic | 40.0% |
| AACCATACGGGCAAACATTG+TGG | - | chr5.3:6161274-6161293 | MS.gene09923:intron | 45.0% | |
| ACAACTCTACCTGCAGAAAC+AGG | + | chr5.3:6161074-6161093 | None:intergenic | 45.0% | |
| ACCATACGGGCAAACATTGT+GGG | - | chr5.3:6161275-6161294 | MS.gene09923:intron | 45.0% | |
| AGGTGCGTCCTACCAAAAAA+AGG | - | chr5.3:6159862-6159881 | MS.gene09923:CDS | 45.0% | |
| AGGTTGTCCATCTGAATAGG+AGG | + | chr5.3:6160705-6160724 | None:intergenic | 45.0% | |
| ATATCAGCTGTACAGGATGG+TGG | - | chr5.3:6159612-6159631 | MS.gene09923:CDS | 45.0% | |
| ATCACCGATAGCTAAGTGGA+TGG | - | chr5.3:6160631-6160650 | MS.gene09923:intron | 45.0% | |
| ATGACTCCAAATCTTGGGCA+AGG | - | chr5.3:6161119-6161138 | MS.gene09923:CDS | 45.0% | |
| ATGTTTGCCCGTATGGTTAG+TGG | + | chr5.3:6161272-6161291 | None:intergenic | 45.0% | |
| CACCCAATGACTCCAAATCT+TGG | - | chr5.3:6161113-6161132 | MS.gene09923:CDS | 45.0% | |
| CACCGGATGACACTATAATC+AGG | - | chr5.3:6161006-6161025 | MS.gene09923:intron | 45.0% | |
| CACTATAATCAGGACTCCGT+TGG | - | chr5.3:6161016-6161035 | MS.gene09923:intron | 45.0% | |
| CACTCCACCCATTCTTGAAA+AGG | + | chr5.3:6159446-6159465 | None:intergenic | 45.0% | |
| CAGATTGTAATAGGGTGCGA+CGG | - | chr5.3:6160602-6160621 | MS.gene09923:intron | 45.0% | |
| CAGGGTCATAACCAATCATG+TGG | + | chr5.3:6160489-6160508 | None:intergenic | 45.0% | |
| CCTGAGAATTCAACACAAGC+AGG | + | chr5.3:6159358-6159377 | None:intergenic | 45.0% | |
| CCTGCTTGTGTTGAATTCTC+AGG | - | chr5.3:6159355-6159374 | MS.gene09923:CDS | 45.0% | |
| GAACATGTTGTAATCGTGGG+TGG | - | chr5.3:6159234-6159253 | MS.gene09923:CDS | 45.0% | |
| GAAGCAAGCTAAGGATCTAG+TGG | - | chr5.3:6160944-6160963 | MS.gene09923:CDS | 45.0% | |
| GCACGGGTGAATTACATCTA+CGG | - | chr5.3:6160731-6160750 | MS.gene09923:intron | 45.0% | |
| GCTAGAGTTGAAACCTGTGA+AGG | + | chr5.3:6159290-6159309 | None:intergenic | 45.0% | |
| GGCTCAATCTTCAGTCCAAA+AGG | - | chr5.3:6159212-6159231 | MS.gene09923:CDS | 45.0% | |
| GGTGCTAAAGAAGCAAGCTA+AGG | - | chr5.3:6160935-6160954 | MS.gene09923:CDS | 45.0% | |
| TATAATCAGGACTCCGTTGG+TGG | - | chr5.3:6161019-6161038 | MS.gene09923:intron | 45.0% | |
| TCACCGATAGCTAAGTGGAT+GGG | - | chr5.3:6160632-6160651 | MS.gene09923:intron | 45.0% | |
| TCAGTGTCATGTACTCGTGT+TGG | + | chr5.3:6159800-6159819 | None:intergenic | 45.0% | |
| TGCTTCAACAGTTCATCTCC+AGG | - | chr5.3:6160812-6160831 | MS.gene09923:intron | 45.0% | |
| TTCCTAACAGAACACACCAG+CGG | + | chr5.3:6161323-6161342 | None:intergenic | 45.0% | |
| TTCGATCACCGATAGCTAAG+TGG | - | chr5.3:6160627-6160646 | MS.gene09923:intron | 45.0% | |
| ! | AAGGTATCCCCATTTGGACT+TGG | + | chr5.3:6160271-6160290 | None:intergenic | 45.0% |
| ! | GCCCAAGATTTGGAGTCATT+GGG | + | chr5.3:6161118-6161137 | None:intergenic | 45.0% |
| ! | TGCCCAAGATTTGGAGTCAT+TGG | + | chr5.3:6161119-6161138 | None:intergenic | 45.0% |
| !! | AGTTTTGCCACTGGCCTATT+TGG | + | chr5.3:6159979-6159998 | None:intergenic | 45.0% |
| !! | ATAAGTCCACCTGTTTCTGC+AGG | - | chr5.3:6161062-6161081 | MS.gene09923:intron | 45.0% |
| !! | GAATTCTCAGGCTTGGTGTT+CGG | - | chr5.3:6159367-6159386 | MS.gene09923:CDS | 45.0% |
| !! | TCACCCTTTTCAAGAATGGG+TGG | - | chr5.3:6159439-6159458 | MS.gene09923:CDS | 45.0% |
| !!! | ACCGATGGCTCGGTTATTTT+AGG | + | chr5.3:6160918-6160937 | None:intergenic | 45.0% |
| !!! | TGGACAACCTTTTGAAGCAC+GGG | - | chr5.3:6160715-6160734 | MS.gene09923:intron | 45.0% |
| ACCCACAATGTTTGCCCGTA+TGG | + | chr5.3:6161279-6161298 | None:intergenic | 50.0% | |
| ACGGATATTGTGCAGCCAAG+AGG | - | chr5.3:6160150-6160169 | MS.gene09923:intron | 50.0% | |
| ACGGGCAAACATTGTGGGTT+CGG | - | chr5.3:6161280-6161299 | MS.gene09923:intron | 50.0% | |
| ACTCTACCTGCAGAAACAGG+TGG | + | chr5.3:6161071-6161090 | None:intergenic | 50.0% | |
| CAAAGCCATCGATCCACCAA+CGG | + | chr5.3:6161035-6161054 | None:intergenic | 50.0% | |
| CAACTGCTCTATCCCTTCAC+AGG | - | chr5.3:6159274-6159293 | MS.gene09923:CDS | 50.0% | |
| CAGTCAGAGTCACTTCGAAC+AGG | - | chr5.3:6159405-6159424 | MS.gene09923:CDS | 50.0% | |
| CATGCTCCTTGCCCAAGATT+TGG | + | chr5.3:6161128-6161147 | None:intergenic | 50.0% | |
| CATGTTGTAATCGTGGGTGG+TGG | - | chr5.3:6159237-6159256 | MS.gene09923:CDS | 50.0% | |
| CTGAATAGGAGGCAAGTCCA+CGG | + | chr5.3:6160694-6160713 | None:intergenic | 50.0% | |
| CTTCCTACCAAATAGGCCAG+TGG | - | chr5.3:6159969-6159988 | MS.gene09923:CDS | 50.0% | |
| GAAGGGATAGAGCAGTTGCA+AGG | + | chr5.3:6159272-6159291 | None:intergenic | 50.0% | |
| GCAGGTAGAGTTGTACTCGT+TGG | - | chr5.3:6161080-6161099 | MS.gene09923:CDS | 50.0% | |
| GGACTTGCCTCCTATTCAGA+TGG | - | chr5.3:6160695-6160714 | MS.gene09923:intron | 50.0% | |
| GTTGGTCATTGTGCTTTCCG+TGG | - | chr5.3:6160674-6160693 | MS.gene09923:intron | 50.0% | |
| TCAGAGTCACTTCGAACAGG+TGG | - | chr5.3:6159408-6159427 | MS.gene09923:CDS | 50.0% | |
| TCCTAACAGAACACACCAGC+GGG | + | chr5.3:6161322-6161341 | None:intergenic | 50.0% | |
| TGTGGGTTCGGCTTTGCAAT+GGG | - | chr5.3:6161292-6161311 | MS.gene09923:intron | 50.0% | |
| TTGTGCTCTTGAGGATGCAG+TGG | - | chr5.3:6161148-6161167 | MS.gene09923:CDS | 50.0% | |
| TTGTGGGTTCGGCTTTGCAA+TGG | - | chr5.3:6161291-6161310 | MS.gene09923:intron | 50.0% | |
| ! | AGGAGCATGTTGTGCTCTTG+AGG | - | chr5.3:6161139-6161158 | MS.gene09923:CDS | 50.0% |
| ! | AGTAAGGCTTGGTCCATTGC+TGG | - | chr5.3:6161364-6161383 | MS.gene09923:CDS | 50.0% |
| ! | ATGGTGGTGAAGTCTGAGGA+TGG | - | chr5.3:6159628-6159647 | MS.gene09923:CDS | 50.0% |
| ! | ATTTGGAGTCATTGGGTGCC+AGG | + | chr5.3:6161111-6161130 | None:intergenic | 50.0% |
| ! | GCTTGCTTCTTTAGCACCGA+TGG | + | chr5.3:6160933-6160952 | None:intergenic | 50.0% |
| ! | GGACCAAGCCTTACTAGCTT+AGG | + | chr5.3:6161359-6161378 | None:intergenic | 50.0% |
| ! | TTGCCACTGGCCTATTTGGT+AGG | + | chr5.3:6159975-6159994 | None:intergenic | 50.0% |
| !! | CTTCTTTAGCACCGATGGCT+CGG | + | chr5.3:6160928-6160947 | None:intergenic | 50.0% |
| !!! | AGTGGAGAGGAGGGTACTTT+TGG | - | chr5.3:6160180-6160199 | MS.gene09923:intron | 50.0% |
| ACCCGCTGGTGTGTTCTGTT+AGG | - | chr5.3:6161318-6161337 | MS.gene09923:CDS | 55.0% | |
| ATGCATGGACATCGGGGAGT+GGG | + | chr5.3:6160043-6160062 | None:intergenic | 55.0% | |
| TACGGAAAAGGGTTACGCGC+AGG | - | chr5.3:6160749-6160768 | MS.gene09923:intron | 55.0% | |
| TGGTGTTCGGTCTCTTGTGC+TGG | - | chr5.3:6159380-6159399 | MS.gene09923:CDS | 55.0% | |
| TTGTACTCGTTGGAGACGCC+TGG | - | chr5.3:6161090-6161109 | MS.gene09923:CDS | 55.0% | |
| TTTGCAATGGGACAACCCGC+TGG | - | chr5.3:6161304-6161323 | MS.gene09923:intron | 55.0% | |
| ! | ATGGGTGCGAGTTTTGCCAC+TGG | + | chr5.3:6159988-6160007 | None:intergenic | 55.0% |
| ! | CAGGATGGTGGTGAAGTCTG+AGG | - | chr5.3:6159624-6159643 | MS.gene09923:CDS | 55.0% |
| ! | CGTTGGTGGATCGATGGCTT+TGG | - | chr5.3:6161033-6161052 | MS.gene09923:intron | 55.0% |
| GATGCATGGACATCGGGGAG+TGG | + | chr5.3:6160044-6160063 | None:intergenic | 60.0% | |
| TCTCCACTGCACGCACCTCT+TGG | + | chr5.3:6160168-6160187 | None:intergenic | 60.0% | |
| ! | AAGAGGTGCGTGCAGTGGAG+AGG | - | chr5.3:6160167-6160186 | MS.gene09923:intron | 60.0% |
| ! | ATCGTGGGTGGTGGCATTGC+AGG | - | chr5.3:6159246-6159265 | MS.gene09923:CDS | 60.0% |
| ! | GGACTCCGTTGGTGGATCGA+TGG | - | chr5.3:6161027-6161046 | MS.gene09923:intron | 60.0% |
| AGGTGCGTGCAGTGGAGAGG+AGG | - | chr5.3:6160170-6160189 | MS.gene09923:intron | 65.0% | |
| GGTGCGTGCAGTGGAGAGGA+GGG | - | chr5.3:6160171-6160190 | MS.gene09923:intron | 65.0% | |
| ! | CAGCCAAGAGGTGCGTGCAG+TGG | - | chr5.3:6160162-6160181 | MS.gene09923:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6159179 | 6161424 | 6159179 | ID=MS.gene09923 |
| chr5.3 | mRNA | 6159179 | 6161424 | 6159179 | ID=MS.gene09923.t1;Parent=MS.gene09923 |
| chr5.3 | exon | 6161308 | 6161424 | 6161308 | ID=MS.gene09923.t1.exon1;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6161308 | 6161424 | 6161308 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| chr5.3 | exon | 6161080 | 6161226 | 6161080 | ID=MS.gene09923.t1.exon2;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6161080 | 6161226 | 6161080 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| chr5.3 | exon | 6160911 | 6160976 | 6160911 | ID=MS.gene09923.t1.exon3;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6160911 | 6160976 | 6160911 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| chr5.3 | exon | 6160276 | 6160438 | 6160276 | ID=MS.gene09923.t1.exon4;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6160276 | 6160438 | 6160276 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| chr5.3 | exon | 6159770 | 6159998 | 6159770 | ID=MS.gene09923.t1.exon5;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6159770 | 6159998 | 6159770 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| chr5.3 | exon | 6159179 | 6159690 | 6159179 | ID=MS.gene09923.t1.exon6;Parent=MS.gene09923.t1 |
| chr5.3 | CDS | 6159179 | 6159690 | 6159179 | ID=cds.MS.gene09923.t1;Parent=MS.gene09923.t1 |
| Gene Sequence |
| Protein sequence |
