Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27002.t1 | XP_003589327.1 | 99.5 | 436 | 2 | 0 | 120 | 555 | 110 | 545 | 7.70E-240 | 839.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27002.t1 | D9R4W7 | 44.4 | 405 | 216 | 5 | 134 | 537 | 11 | 407 | 4.2e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27002.t1 | G7I5C6 | 99.5 | 436 | 2 | 0 | 120 | 555 | 110 | 545 | 5.5e-240 | 839.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene27002 | 0.813396 | 2.61E-51 | -1.69E-46 |
| MS.gene049173 | MS.gene27002 | 0.816627 | 5.02E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene27002 | 0.801635 | 8.21E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene27002 | 0.858108 | 1.03E-62 | -1.69E-46 |
| MS.gene049232 | MS.gene27002 | 0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene27002 | 0.83185 | 1.32E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene27002 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene27002 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene27002 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene27002 | 0.849441 | 3.23E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene27002 | 0.845455 | 4.02E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene27002 | 0.814609 | 1.41E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene27002 | 0.808202 | 3.48E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene27002 | 0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene27002 | 0.817104 | 3.92E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene27002 | 0.818167 | 2.26E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene27002 | 0.813021 | 3.16E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene27002 | 0.807522 | 4.85E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene27002 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene27002 | 0.803796 | 2.94E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene27002 | 0.819608 | 1.06E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene27002 | 0.855318 | 6.84E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene27002 | 0.814995 | 1.16E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene27002 | 0.836845 | 7.37E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene27002 | 0.855398 | 6.48E-62 | -1.69E-46 |
| MS.gene05080 | MS.gene27002 | 0.850555 | 1.57E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene27002 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene27002 | 0.823944 | 1.05E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene27002 | 0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene27002 | 0.815388 | 9.49E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene27002 | 0.837203 | 5.97E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene27002 | 0.811934 | 5.46E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene27002 | 0.817818 | 2.71E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene27002 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene27002 | 0.830751 | 2.46E-55 | -1.69E-46 |
| MS.gene051438 | MS.gene27002 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene051617 | MS.gene27002 | 0.81952 | 1.11E-52 | -1.69E-46 |
| MS.gene051734 | MS.gene27002 | 0.802501 | 5.45E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene27002 | 0.833976 | 3.91E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene27002 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene27002 | 0.816359 | 5.76E-52 | -1.69E-46 |
| MS.gene051874 | MS.gene27002 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene27002 | 0.833012 | 6.81E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene27002 | 0.826909 | 2.09E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene27002 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene27002 | 0.845012 | 5.30E-59 | -1.69E-46 |
| MS.gene052872 | MS.gene27002 | 0.846596 | 1.97E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene27002 | 0.858573 | 7.51E-63 | -1.69E-46 |
| MS.gene053009 | MS.gene27002 | 0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene27002 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene27002 | 0.846864 | 1.66E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene27002 | 0.830416 | 2.97E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene27002 | 0.830604 | 2.67E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene27002 | 0.805568 | 1.25E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene27002 | 0.817414 | 3.34E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene27002 | 0.852713 | 3.85E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene27002 | 0.829865 | 4.05E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene27002 | 0.839742 | 1.32E-57 | -1.69E-46 |
| MS.gene053912 | MS.gene27002 | 0.837797 | 4.20E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene27002 | 0.812711 | 3.70E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene27002 | 0.871982 | 4.51E-67 | -1.69E-46 |
| MS.gene054642 | MS.gene27002 | 0.824105 | 9.67E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene27002 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene27002 | 0.862954 | 3.51E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene27002 | 0.819216 | 1.30E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene27002 | 0.816568 | 5.17E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene27002 | 0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene27002 | 0.80404 | 2.61E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene27002 | 0.826739 | 2.30E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene27002 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene055577 | MS.gene27002 | 0.858997 | 5.61E-63 | -1.69E-46 |
| MS.gene055722 | MS.gene27002 | 0.877015 | 8.81E-69 | -1.69E-46 |
| MS.gene055741 | MS.gene27002 | 0.809894 | 1.51E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene27002 | 0.816142 | 6.44E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene27002 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene27002 | 0.821546 | 3.81E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene27002 | 0.812657 | 3.80E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene27002 | 0.845386 | 4.19E-59 | -1.69E-46 |
| MS.gene056083 | MS.gene27002 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene056283 | MS.gene27002 | 0.815748 | 7.89E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene27002 | 0.803074 | 4.15E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene27002 | 0.82769 | 1.36E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene27002 | 0.818114 | 2.32E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene27002 | 0.8458 | 3.24E-59 | -1.69E-46 |
| MS.gene05664 | MS.gene27002 | 0.825611 | 4.27E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene27002 | 0.828212 | 1.02E-54 | -1.69E-46 |
| MS.gene05666 | MS.gene27002 | 0.851139 | 1.08E-60 | -1.69E-46 |
| MS.gene056897 | MS.gene27002 | 0.823806 | 1.14E-53 | -1.69E-46 |
| MS.gene056947 | MS.gene27002 | 0.834857 | 2.35E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene27002 | 0.851211 | 1.03E-60 | -1.69E-46 |
| MS.gene057331 | MS.gene27002 | 0.845912 | 3.02E-59 | -1.69E-46 |
| MS.gene057416 | MS.gene27002 | 0.806285 | 8.86E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene27002 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene27002 | 0.852934 | 3.33E-61 | -1.69E-46 |
| MS.gene057831 | MS.gene27002 | 0.82956 | 4.81E-55 | -1.69E-46 |
| MS.gene057857 | MS.gene27002 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene27002 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene27002 | 0.831609 | 1.51E-55 | -1.69E-46 |
| MS.gene058130 | MS.gene27002 | 0.825601 | 4.29E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene27002 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene27002 | 0.807885 | 4.06E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene27002 | 0.816687 | 4.86E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene27002 | 0.851476 | 8.66E-61 | -1.69E-46 |
| MS.gene058748 | MS.gene27002 | 0.811988 | 5.31E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene27002 | 0.864365 | 1.28E-64 | -1.69E-46 |
| MS.gene058838 | MS.gene27002 | 0.824865 | 6.40E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene27002 | 0.858937 | 5.84E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene27002 | 0.827386 | 1.61E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene27002 | 0.841903 | 3.58E-58 | -1.69E-46 |
| MS.gene059029 | MS.gene27002 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene27002 | 0.836195 | 1.08E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene27002 | 0.824077 | 9.82E-54 | -1.69E-46 |
| MS.gene059680 | MS.gene27002 | 0.806467 | 8.11E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene27002 | 0.809206 | 2.12E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene27002 | 0.861193 | 1.22E-63 | -1.69E-46 |
| MS.gene059865 | MS.gene27002 | 0.833468 | 5.24E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene27002 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene27002 | 0.806189 | 9.28E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene27002 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene27002 | 0.849843 | 2.49E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene27002 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene27002 | 0.807749 | 4.34E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene27002 | 0.837122 | 6.26E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene27002 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene27002 | 0.82172 | 3.47E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene27002 | 0.804202 | 2.42E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene27002 | 0.809666 | 1.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27002.t1 | MTR_1g022980 | 92.665 | 559 | 23 | 5 | 1 | 555 | 1 | 545 | 0.0 | 947 |
| MS.gene27002.t1 | MTR_5g089970 | 38.462 | 299 | 148 | 7 | 187 | 452 | 107 | 402 | 3.64e-45 | 167 |
| MS.gene27002.t1 | MTR_5g089970 | 38.014 | 292 | 145 | 7 | 194 | 452 | 106 | 394 | 6.82e-42 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27002.t1 | AT5G57960 | 84.009 | 444 | 68 | 1 | 107 | 550 | 90 | 530 | 0.0 | 759 |
| MS.gene27002.t1 | AT5G57960 | 86.133 | 375 | 52 | 0 | 177 | 551 | 3 | 377 | 0.0 | 686 |
| MS.gene27002.t1 | AT3G49725 | 35.535 | 318 | 166 | 8 | 171 | 452 | 157 | 471 | 1.49e-41 | 159 |
Find 109 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGTTACCATTTGAAAA+TGG | 0.177139 | 1.3:+2319590 | MS.gene27002:CDS |
| AGCTGATACTGCTGGATTAT+TGG | 0.256175 | 1.3:+2314573 | MS.gene27002:CDS |
| AGAAGATTCTTTGAGTGAAT+TGG | 0.301356 | 1.3:+2314543 | MS.gene27002:CDS |
| CAATTCCAAAGTTGATGGTT+TGG | 0.311895 | 1.3:+2318006 | MS.gene27002:CDS |
| TGTTCTTCTTGTTCTTGAAT+TGG | 0.329415 | 1.3:-2313678 | None:intergenic |
| CTTTGTTACCATTTGAAAAT+GGG | 0.348300 | 1.3:+2319591 | MS.gene27002:CDS |
| GATATCAGAATCATCACTTT+TGG | 0.348904 | 1.3:+2317777 | MS.gene27002:CDS |
| ACCGAAAGCAGTACCGTAAT+CGG | 0.366937 | 1.3:+2316925 | MS.gene27002:CDS |
| GCCGATTACGGTACTGCTTT+CGG | 0.367836 | 1.3:-2316926 | None:intergenic |
| CATTTATCTGTTGCTCGGCC+AGG | 0.375286 | 1.3:-2317947 | None:intergenic |
| TAAAACCAACAGTGTCTGTT+AGG | 0.378664 | 1.3:-2317576 | None:intergenic |
| ATCATCAATTCCAAAGTTGA+TGG | 0.378860 | 1.3:+2318001 | MS.gene27002:CDS |
| AACACATGAAGCATCTTTAC+AGG | 0.379979 | 1.3:+2316180 | MS.gene27002:CDS |
| TGGTGCATGTGATTGATATC+AGG | 0.385889 | 1.3:+2317797 | MS.gene27002:CDS |
| CTAGGTTGCATTAGCACAAA+TGG | 0.387279 | 1.3:+2316528 | MS.gene27002:intron |
| CCAATGTACGTCCTAGGGTT+TGG | 0.404578 | 1.3:-2315581 | None:intergenic |
| ATTTATCTGTTGCTCGGCCA+GGG | 0.407400 | 1.3:-2317946 | None:intergenic |
| CTAGTGATCCCCAGAAAATC+AGG | 0.410458 | 1.3:+2319349 | MS.gene27002:CDS |
| TTGTATGCCATCGCCACTTA+AGG | 0.410809 | 1.3:-2319412 | None:intergenic |
| GGTGAAGTTAGTGATTCATT+TGG | 0.426485 | 1.3:+2314517 | MS.gene27002:CDS |
| AACCATTCCAACTTGGTGTA+TGG | 0.431181 | 1.3:-2319627 | None:intergenic |
| ATGAAATGCGCATGCGTTAA+CGG | 0.432671 | 1.3:+2313429 | MS.gene27002:CDS |
| GTTAAGAGAGAAAGAGGATA+AGG | 0.435361 | 1.3:-2313583 | None:intergenic |
| ACCTGTGCCTGTGGTATCCT+TGG | 0.436714 | 1.3:+2316959 | MS.gene27002:CDS |
| AGTAGTGGCTTTATCTTCAT+CGG | 0.441482 | 1.3:-2313718 | None:intergenic |
| CCAGAGCCAATGTACGTCCT+AGG | 0.441800 | 1.3:-2315587 | None:intergenic |
| GTAGTGGCTTTATCTTCATC+GGG | 0.443213 | 1.3:-2313717 | None:intergenic |
| GGAGGACAGGTGAAGGGAAT+GGG | 0.443918 | 1.3:+2316604 | MS.gene27002:CDS |
| ATCTTTCTTACTAGTGTAGT+AGG | 0.445633 | 1.3:-2317610 | None:intergenic |
| GTACTGAGAGACGCCGATTA+CGG | 0.446417 | 1.3:-2316938 | None:intergenic |
| CTCCTCCAGCGTGGCTCTGA+AGG | 0.446528 | 1.3:-2317755 | None:intergenic |
| TAAGAGTGCAATTAATGCAT+TGG | 0.446596 | 1.3:+2315625 | MS.gene27002:CDS |
| CAGAAAATCAGGCTAGAAGC+TGG | 0.447370 | 1.3:+2319360 | MS.gene27002:CDS |
| TTCTTGAATTGGAAGTAAAA+CGG | 0.448597 | 1.3:-2313667 | None:intergenic |
| GGTACACACAGTTGTCTCAT+AGG | 0.449520 | 1.3:-2319845 | None:intergenic |
| GCTTTATCTTCATCGGGAGT+TGG | 0.450309 | 1.3:-2313711 | None:intergenic |
| TGGAAGTAAAACGGCGTCGT+TGG | 0.454503 | 1.3:-2313658 | None:intergenic |
| TAGGTTGGTTATACGAATGC+TGG | 0.454748 | 1.3:+2317082 | MS.gene27002:intron |
| CACAGCATTTATCTGTTGCT+CGG | 0.455772 | 1.3:-2317952 | None:intergenic |
| TTGTTCCAAACCATCAACTT+TGG | 0.473073 | 1.3:-2318011 | None:intergenic |
| ACTCACCTTGAGCGTCAATC+AGG | 0.473830 | 1.3:+2316583 | MS.gene27002:CDS |
| TTTGATGATGAGCTATCAGC+TGG | 0.475329 | 1.3:+2315665 | MS.gene27002:CDS |
| TTTAACAGGACTCCATGGTA+TGG | 0.475571 | 1.3:+2319561 | MS.gene27002:intron |
| AGGAGGACAGGTGAAGGGAA+TGG | 0.488898 | 1.3:+2316603 | MS.gene27002:CDS |
| ACCTGTACTCTCCTTGTAGT+TGG | 0.491218 | 1.3:-2317178 | None:intergenic |
| TTATCTTCATCGGGAGTTGG+AGG | 0.492319 | 1.3:-2313708 | None:intergenic |
| TCCTAGGCAACTGCGCAACC+TGG | 0.497117 | 1.3:+2316081 | MS.gene27002:intron |
| GCAACTGCGCAACCTGGAAA+AGG | 0.498140 | 1.3:+2316087 | MS.gene27002:CDS |
| TTTCTTATGGCAGATTGATA+GGG | 0.500022 | 1.3:+2319326 | MS.gene27002:intron |
| CTCGCTGATTAAATATATCA+AGG | 0.502133 | 1.3:-2316153 | None:intergenic |
| AACAAACCTCTCTTCCGTTA+CGG | 0.507246 | 1.3:-2313803 | None:intergenic |
| TGCGCATGCGTTAACGGTGG+TGG | 0.508686 | 1.3:+2313435 | MS.gene27002:CDS |
| AAAGTTGATGGTTTGGAACA+AGG | 0.512730 | 1.3:+2318013 | MS.gene27002:CDS |
| TTCCGTTACGGAGCTTGAAG+CGG | 0.515448 | 1.3:-2313791 | None:intergenic |
| GAGCAGTTAGCTGATACTGC+TGG | 0.517824 | 1.3:+2314565 | MS.gene27002:CDS |
| TCAATCAGGAGGACAGGTGA+AGG | 0.530450 | 1.3:+2316597 | MS.gene27002:CDS |
| CAACTTTAGATCCAACTACA+AGG | 0.530983 | 1.3:+2317167 | MS.gene27002:CDS |
| TTAACAGGACTCCATGGTAT+GGG | 0.535370 | 1.3:+2319562 | MS.gene27002:intron |
| TATTCTTTAACAGGACTCCA+TGG | 0.536002 | 1.3:+2319556 | MS.gene27002:intron |
| AAGCAACCTCGCAAAACGTA+GGG | 0.539631 | 1.3:-2319819 | None:intergenic |
| TGTAACGTTAAGAGAGAAAG+AGG | 0.539755 | 1.3:-2313589 | None:intergenic |
| CCTAGGACGTACATTGGCTC+TGG | 0.544137 | 1.3:+2315587 | MS.gene27002:CDS |
| AGTTGCAAATAGTTTATCCT+CGG | 0.544687 | 1.3:-2317149 | None:intergenic |
| CGAGCAAGGGACATATATCA+AGG | 0.553171 | 1.3:+2319787 | MS.gene27002:CDS |
| AACCGCTTCAAGCTCCGTAA+CGG | 0.554129 | 1.3:+2313789 | MS.gene27002:CDS |
| TGAGCGTCAATCAGGAGGAC+AGG | 0.558310 | 1.3:+2316591 | MS.gene27002:CDS |
| TTTGTTACCATTTGAAAATG+GGG | 0.559718 | 1.3:+2319592 | MS.gene27002:CDS |
| CACCATACACCAAGTTGGAA+TGG | 0.561527 | 1.3:+2319625 | MS.gene27002:CDS |
| CAGAGCCAATGTACGTCCTA+GGG | 0.562024 | 1.3:-2315586 | None:intergenic |
| TGCGGCCTTCAGAGCCACGC+TGG | 0.563677 | 1.3:+2317750 | MS.gene27002:CDS |
| CTGGTTGGTGTTGAGAGAAA+AGG | 0.565144 | 1.3:+2314496 | MS.gene27002:CDS |
| ATATAGGAATATACCGAGCA+AGG | 0.568191 | 1.3:+2319773 | MS.gene27002:intron |
| ACCAAGGATACCACAGGCAC+AGG | 0.571154 | 1.3:-2316960 | None:intergenic |
| CTTGGTGTATGGTGCTGAGA+AGG | 0.572248 | 1.3:-2319616 | None:intergenic |
| TGCAGTTCAAGACAAACTAA+AGG | 0.573803 | 1.3:+2319446 | MS.gene27002:CDS |
| CTCAGCACCATACACCAAGT+TGG | 0.574248 | 1.3:+2319620 | MS.gene27002:CDS |
| TGTCCAGATGAAGAATGGAA+AGG | 0.575689 | 1.3:+2317546 | MS.gene27002:intron |
| TTTATCTGTTGCTCGGCCAG+GGG | 0.576253 | 1.3:-2317945 | None:intergenic |
| TCCAACTACAAGGAGAGTAC+AGG | 0.576741 | 1.3:+2317177 | MS.gene27002:CDS |
| GAAGAGAAAGCGTATCTGGT+TGG | 0.578497 | 1.3:+2314481 | MS.gene27002:CDS |
| GTCCTCCTGATTGACGCTCA+AGG | 0.579237 | 1.3:-2316588 | None:intergenic |
| GTTTAAGAAAGTTAAGGTCG+TGG | 0.579779 | 1.3:-2319866 | None:intergenic |
| GTATGCATATCTGCCTTAAG+TGG | 0.586670 | 1.3:+2319399 | MS.gene27002:CDS |
| GGCCTTCAGAGCCACGCTGG+AGG | 0.589903 | 1.3:+2317753 | MS.gene27002:CDS |
| CTTGATATATGTCCCTTGCT+CGG | 0.592539 | 1.3:-2319786 | None:intergenic |
| ATATCTGCCTTAAGTGGCGA+TGG | 0.598505 | 1.3:+2319405 | MS.gene27002:CDS |
| CCAAACCCTAGGACGTACAT+TGG | 0.607208 | 1.3:+2315581 | MS.gene27002:CDS |
| CAAGCTCCGTAACGGAAGAG+AGG | 0.609194 | 1.3:+2313797 | MS.gene27002:CDS |
| TATAGGAATATACCGAGCAA+GGG | 0.610221 | 1.3:+2319774 | MS.gene27002:intron |
| TTTCTCCTAACAGACACTGT+TGG | 0.614231 | 1.3:+2317571 | MS.gene27002:CDS |
| GGTATACTTCTGGTAAGTAG+AGG | 0.616128 | 1.3:-2314602 | None:intergenic |
| TTATCTGTTGCTCGGCCAGG+GGG | 0.617915 | 1.3:-2317944 | None:intergenic |
| ACAGGACTCCATGGTATGGG+TGG | 0.618988 | 1.3:+2319565 | MS.gene27002:intron |
| CAATCAGGAGGACAGGTGAA+GGG | 0.620912 | 1.3:+2316598 | MS.gene27002:CDS |
| CAAAGCTTCCACCCATACCA+TGG | 0.623436 | 1.3:-2319573 | None:intergenic |
| GGTTATCGATGTTATCGTCG+TGG | 0.624843 | 1.3:-2313770 | None:intergenic |
| GGCTTGCTTCTCCAAACCCT+AGG | 0.630711 | 1.3:+2315570 | MS.gene27002:intron |
| TAAGCAACCTCGCAAAACGT+AGG | 0.630872 | 1.3:-2319820 | None:intergenic |
| AAACTAACCAAGGATACCAC+AGG | 0.635397 | 1.3:-2316966 | None:intergenic |
| CACCTTGAGCGTCAATCAGG+AGG | 0.636726 | 1.3:+2316586 | MS.gene27002:CDS |
| TGGAGCAGATGTTCTTGCCG+AGG | 0.641917 | 1.3:+2317132 | MS.gene27002:CDS |
| TGAAGTTCTTCAGTGTTGTG+CGG | 0.644930 | 1.3:-2313612 | None:intergenic |
| TGATATATTTAATCAGCGAG+CGG | 0.651334 | 1.3:+2316156 | MS.gene27002:CDS |
| TCTCTCAGTACCTGTGCCTG+TGG | 0.654803 | 1.3:+2316950 | MS.gene27002:CDS |
| TTCTGATATCTCCTCCAGCG+TGG | 0.678698 | 1.3:-2317764 | None:intergenic |
| CGAGCAACAGATAAATGCTG+TGG | 0.680751 | 1.3:+2317953 | MS.gene27002:CDS |
| TTGATGATGAGCTATCAGCT+GGG | 0.694886 | 1.3:+2315666 | MS.gene27002:CDS |
| AGCAACCTCGCAAAACGTAG+GGG | 0.703684 | 1.3:-2319818 | None:intergenic |
| AAATGCGCATGCGTTAACGG+TGG | 0.787822 | 1.3:+2313432 | MS.gene27002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+TGG | + | chr1.3:2317446-2317465 | MS.gene27002:intron | 0.0% |
| !! | AAATAAAACAAAAAATAAGA+TGG | - | chr1.3:2316401-2316420 | None:intergenic | 10.0% |
| !! | TAATAACACAATATATAATT+CGG | - | chr1.3:2316438-2316457 | None:intergenic | 10.0% |
| !!! | TTATTTTTTGACATTATTTA+CGG | + | chr1.3:2317685-2317704 | MS.gene27002:intron | 10.0% |
| !! | AAAATATAAGAGAAACTATT+TGG | + | chr1.3:2319056-2319075 | MS.gene27002:intron | 15.0% |
| !! | AAATATAAGAGAAACTATTT+GGG | + | chr1.3:2319057-2319076 | MS.gene27002:intron | 15.0% |
| !! | AAATTCTATTATTCTTTAAC+AGG | + | chr1.3:2319547-2319566 | MS.gene27002:intron | 15.0% |
| !! | AATAACACAATATATAATTC+GGG | - | chr1.3:2316437-2316456 | None:intergenic | 15.0% |
| !! | ATAAAAATGTAATATTATCC+AGG | - | chr1.3:2317217-2317236 | None:intergenic | 15.0% |
| !! | ATATAAACATAAAATACCAT+AGG | - | chr1.3:2316312-2316331 | None:intergenic | 15.0% |
| !! | ATATTTCTCATCAAAAAAAA+AGG | - | chr1.3:2318162-2318181 | None:intergenic | 15.0% |
| !! | CAGGTAATTATAAATTAAAA+AGG | + | chr1.3:2316199-2316218 | MS.gene27002:intron | 15.0% |
| !! | GATGATAATTATTAATTGAA+GGG | + | chr1.3:2315359-2315378 | MS.gene27002:intron | 15.0% |
| !! | GTAATTATAAATTAAAAAGG+AGG | + | chr1.3:2316202-2316221 | MS.gene27002:intron | 15.0% |
| !! | TAACTTATATGAAAACAATT+TGG | - | chr1.3:2314862-2314881 | None:intergenic | 15.0% |
| !! | TGATGATAATTATTAATTGA+AGG | + | chr1.3:2315358-2315377 | MS.gene27002:intron | 15.0% |
| !! | TGTTATGAATAGAATTAATT+CGG | - | chr1.3:2318204-2318223 | None:intergenic | 15.0% |
| !! | TTATAAGAAAAAAAGTTCTA+GGG | - | chr1.3:2316840-2316859 | None:intergenic | 15.0% |
| !! | TTTATAAGAAAAAAAGTTCT+AGG | - | chr1.3:2316841-2316860 | None:intergenic | 15.0% |
| !!! | AAATTGTAATAGTTTTGATT+CGG | + | chr1.3:2314445-2314464 | MS.gene27002:intron | 15.0% |
| !!! | TAAATGATGATATAGAATTT+TGG | - | chr1.3:2317354-2317373 | None:intergenic | 15.0% |
| !! | AATAACTGTTGATCAATATT+TGG | + | chr1.3:2316241-2316260 | MS.gene27002:intron | 20.0% |
| !! | ACTTATGATATAGCATTTAA+TGG | - | chr1.3:2314782-2314801 | None:intergenic | 20.0% |
| !! | AGATCATCATTATTGTTTAT+TGG | + | chr1.3:2318704-2318723 | MS.gene27002:intron | 20.0% |
| !! | AGTTACAACAATAATTAGTT+AGG | + | chr1.3:2313919-2313938 | MS.gene27002:intron | 20.0% |
| !! | ATAACACAATATATAATTCG+GGG | - | chr1.3:2316436-2316455 | None:intergenic | 20.0% |
| !! | ATTAAGAAAAGAATAGAAGT+TGG | - | chr1.3:2317320-2317339 | None:intergenic | 20.0% |
| !! | GAATTCATTATAAAACTTGA+AGG | - | chr1.3:2318091-2318110 | None:intergenic | 20.0% |
| !! | GATCATCATTATTGTTTATT+GGG | + | chr1.3:2318705-2318724 | MS.gene27002:intron | 20.0% |
| !! | TGGATCTATAAAAAACATAA+AGG | - | chr1.3:2315924-2315943 | None:intergenic | 20.0% |
| !! | TTACATCTAATAGATTGAAA+TGG | - | chr1.3:2313865-2313884 | None:intergenic | 20.0% |
| !!! | ACTTTTAATTTTCAGTAAGA+AGG | + | chr1.3:2315855-2315874 | MS.gene27002:intron | 20.0% |
| !!! | ATGTAAATAGTTCTAACAAA+TGG | - | chr1.3:2319517-2319536 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTAAAGCATTA+TGG | - | chr1.3:2318737-2318756 | None:intergenic | 20.0% |
| !!! | GTTACAATTTATTTTGCTTT+GGG | + | chr1.3:2317639-2317658 | MS.gene27002:intron | 20.0% |
| !!! | GTTTCTCTTATATTTTTTCT+AGG | - | chr1.3:2319052-2319071 | None:intergenic | 20.0% |
| !!! | GTTTTCTTATTTGTTATTGT+TGG | + | chr1.3:2319724-2319743 | MS.gene27002:intron | 20.0% |
| !!! | TGAGGATTTGTTTAAAAATT+TGG | + | chr1.3:2315802-2315821 | MS.gene27002:intron | 20.0% |
| !!! | TGTTACAATTTATTTTGCTT+TGG | + | chr1.3:2317638-2317657 | MS.gene27002:intron | 20.0% |
| !!! | TTTCAAGTTTTCACATAAAT+TGG | + | chr1.3:2314736-2314755 | MS.gene27002:intron | 20.0% |
| ! | AAAACCTATACCACATTATT+TGG | + | chr1.3:2318229-2318248 | MS.gene27002:intron | 25.0% |
| ! | AAACCTATACCACATTATTT+GGG | + | chr1.3:2318230-2318249 | MS.gene27002:intron | 25.0% |
| ! | AACCAAACTCACAATAAAAA+TGG | - | chr1.3:2315245-2315264 | None:intergenic | 25.0% |
| ! | AATAAAAATGGAACTATGGT+TGG | - | chr1.3:2315233-2315252 | None:intergenic | 25.0% |
| ! | AGACTTAATCTAAATGTTAC+AGG | + | chr1.3:2315549-2315568 | MS.gene27002:intron | 25.0% |
| ! | AGCAAAATAAATTGTAACAG+AGG | - | chr1.3:2317637-2317656 | None:intergenic | 25.0% |
| ! | ATAAAAATGGAACTATGGTT+GGG | - | chr1.3:2315232-2315251 | None:intergenic | 25.0% |
| ! | ATATTGATCAACAGTTATTC+AGG | - | chr1.3:2316240-2316259 | None:intergenic | 25.0% |
| ! | ATTTAATGGAGTTGTTAATC+TGG | - | chr1.3:2314768-2314787 | None:intergenic | 25.0% |
| ! | CTTACATTACCATAATACAA+AGG | - | chr1.3:2317023-2317042 | None:intergenic | 25.0% |
| ! | CTTATAAACATCTAATGCAT+GGG | + | chr1.3:2316853-2316872 | MS.gene27002:intron | 25.0% |
| ! | CTTTGTTACCATTTGAAAAT+GGG | + | chr1.3:2319591-2319610 | MS.gene27002:CDS | 25.0% |
| ! | GAAATATGCAGTTAGAAAAA+AGG | - | chr1.3:2315698-2315717 | None:intergenic | 25.0% |
| ! | GATAATAATGTATGCTTACT+TGG | - | chr1.3:2316669-2316688 | None:intergenic | 25.0% |
| ! | GCAATATCAGTCTAAAAAAA+TGG | - | chr1.3:2317001-2317020 | None:intergenic | 25.0% |
| ! | GCATATATCATCATCTTATA+AGG | - | chr1.3:2317046-2317065 | None:intergenic | 25.0% |
| ! | GCATTTATATGTCAATTAAG+TGG | - | chr1.3:2316276-2316295 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr1.3:2319094-2319113 | None:intergenic | 25.0% |
| ! | TATATATCAGTAGAAGTTCT+AGG | + | chr1.3:2317821-2317840 | MS.gene27002:intron | 25.0% |
| ! | TATCCGAATCATATTAAAAC+AGG | - | chr1.3:2319485-2319504 | None:intergenic | 25.0% |
| ! | TCAAAGCTAGTAAACATAAA+TGG | - | chr1.3:2315745-2315764 | None:intergenic | 25.0% |
| ! | TCACAATAAAAATGGAACTA+TGG | - | chr1.3:2315237-2315256 | None:intergenic | 25.0% |
| ! | TCTTATAAACATCTAATGCA+TGG | + | chr1.3:2316852-2316871 | MS.gene27002:intron | 25.0% |
| ! | TGCAACTTCAATTTCAAATT+TGG | + | chr1.3:2314641-2314660 | MS.gene27002:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | chr1.3:2319098-2319117 | MS.gene27002:intron | 25.0% |
| ! | TTAGAACTATTTACATTTGC+TGG | + | chr1.3:2319521-2319540 | MS.gene27002:intron | 25.0% |
| ! | TTCCAGTAAAATAATCACTT+TGG | - | chr1.3:2314714-2314733 | None:intergenic | 25.0% |
| ! | TTCTTGAATTGGAAGTAAAA+CGG | - | chr1.3:2313670-2313689 | None:intergenic | 25.0% |
| ! | TTGACATATAAATGCAAAAG+AGG | + | chr1.3:2316281-2316300 | MS.gene27002:intron | 25.0% |
| ! | TTTGTTACCATTTGAAAATG+GGG | + | chr1.3:2319592-2319611 | MS.gene27002:CDS | 25.0% |
| !! | ATTTTATCGGATTCGTATAT+AGG | + | chr1.3:2319757-2319776 | MS.gene27002:intron | 25.0% |
| !! | ATTTTTATTGTGAGTTTGGT+TGG | + | chr1.3:2315244-2315263 | MS.gene27002:intron | 25.0% |
| !! | TAACTGTTGTTTACATGAAA+CGG | - | chr1.3:2314370-2314389 | None:intergenic | 25.0% |
| !! | TACTTGAATTAGCTTATCAT+AGG | + | chr1.3:2314152-2314171 | MS.gene27002:intron | 25.0% |
| !! | TTTAAAATCTCTTTGCATTG+TGG | + | chr1.3:2314955-2314974 | MS.gene27002:intron | 25.0% |
| !!! | AAGCCTGTTTTAATATGATT+CGG | + | chr1.3:2319479-2319498 | MS.gene27002:intron | 25.0% |
| !!! | AATGCTTTAAAATCAATTCC+TGG | + | chr1.3:2318738-2318757 | MS.gene27002:intron | 25.0% |
| !!! | ATCTGCTATTTTTTAGCAAA+TGG | - | chr1.3:2314057-2314076 | None:intergenic | 25.0% |
| !!! | CTAGGAGTCATTTTATTTAT+CGG | + | chr1.3:2317839-2317858 | MS.gene27002:intron | 25.0% |
| !!! | CTTTTTTTTAAGCTTAGTAG+TGG | - | chr1.3:2313736-2313755 | None:intergenic | 25.0% |
| !!! | TAGCTTTGATTTGAGATAAT+TGG | + | chr1.3:2315756-2315775 | MS.gene27002:intron | 25.0% |
| !!! | TAGGAGTCATTTTATTTATC+GGG | + | chr1.3:2317840-2317859 | MS.gene27002:intron | 25.0% |
| !!! | TCATTTTATTTATCGGGAAA+AGG | + | chr1.3:2317846-2317865 | MS.gene27002:intron | 25.0% |
| !!! | TTCCATTTTTATTGTGAGTT+TGG | + | chr1.3:2315240-2315259 | MS.gene27002:intron | 25.0% |
| !!! | TTGTTTTTGCAGTTTAGAAT+GGG | - | chr1.3:2318466-2318485 | None:intergenic | 25.0% |
| !!! | TTTAATTTTCAGTAAGAAGG+CGG | + | chr1.3:2315858-2315877 | MS.gene27002:intron | 25.0% |
| !!! | TTTGTTTTTGCAGTTTAGAA+TGG | - | chr1.3:2318467-2318486 | None:intergenic | 25.0% |
| AAAAAGAGCTAGAATCTGTT+AGG | + | chr1.3:2316898-2316917 | MS.gene27002:CDS | 30.0% | |
| AAAATAAGCTTAGGTGGTTT+GGG | + | chr1.3:2318956-2318975 | MS.gene27002:intron | 30.0% | |
| AAACTGCAATAGTTGTGTAA+AGG | - | chr1.3:2318066-2318085 | None:intergenic | 30.0% | |
| AACTACTAACTAACTGGTTA+AGG | - | chr1.3:2313903-2313922 | None:intergenic | 30.0% | |
| AAGAAGAAATGGTATACTTC+TGG | - | chr1.3:2314615-2314634 | None:intergenic | 30.0% | |
| AAGAGAAAAACTTGAGCTTA+TGG | - | chr1.3:2314281-2314300 | None:intergenic | 30.0% | |
| AGAAACTATTTGGGAAGATT+TGG | + | chr1.3:2319066-2319085 | MS.gene27002:intron | 30.0% | |
| AGAAGAAATAAGCATGTGAA+TGG | - | chr1.3:2318574-2318593 | None:intergenic | 30.0% | |
| AGAAGATTCTTTGAGTGAAT+TGG | + | chr1.3:2314543-2314562 | MS.gene27002:CDS | 30.0% | |
| AGTCACTCTGTTAATTCTTT+AGG | + | chr1.3:2319220-2319239 | MS.gene27002:intron | 30.0% | |
| AGTTGCAAATAGTTTATCCT+CGG | - | chr1.3:2317152-2317171 | None:intergenic | 30.0% | |
| ATATGCACAATGTATGAAAC+TGG | - | chr1.3:2316791-2316810 | None:intergenic | 30.0% | |
| ATCATCAATTCCAAAGTTGA+TGG | + | chr1.3:2318001-2318020 | MS.gene27002:CDS | 30.0% | |
| ATCTTTCTTACTAGTGTAGT+AGG | - | chr1.3:2317613-2317632 | None:intergenic | 30.0% | |
| CAACAATTAGTTACACTAGT+AGG | + | chr1.3:2314010-2314029 | MS.gene27002:intron | 30.0% | |
| CAATTTCATCCCAAATAATG+TGG | - | chr1.3:2318242-2318261 | None:intergenic | 30.0% | |
| CACATTAAAGACATTGAAAC+AGG | + | chr1.3:2314981-2315000 | MS.gene27002:intron | 30.0% | |
| CATTGCACAATATTGTTTAC+AGG | + | chr1.3:2315407-2315426 | MS.gene27002:intron | 30.0% | |
| CATTGTCAAATTTATCTGCA+AGG | + | chr1.3:2316693-2316712 | MS.gene27002:intron | 30.0% | |
| CTGATATTGCCTTTGTATTA+TGG | + | chr1.3:2317011-2317030 | MS.gene27002:intron | 30.0% | |
| CTGATTGAATTTGTAGTCTT+TGG | + | chr1.3:2314110-2314129 | MS.gene27002:intron | 30.0% | |
| GAATTAATTCGGAGTTAACA+AGG | - | chr1.3:2318193-2318212 | None:intergenic | 30.0% | |
| GAGAACAAAGACATGATTAT+TGG | - | chr1.3:2315443-2315462 | None:intergenic | 30.0% | |
| GTATAACCAACCTAAAATGA+TGG | - | chr1.3:2317076-2317095 | None:intergenic | 30.0% | |
| TAAAGACATTGAAACAGGAT+TGG | + | chr1.3:2314986-2315005 | MS.gene27002:intron | 30.0% | |
| TAGTACATAGATATCGTATC+TGG | + | chr1.3:2314666-2314685 | MS.gene27002:intron | 30.0% | |
| TATAGTTGCATTGTTGTGTA+AGG | + | chr1.3:2316015-2316034 | MS.gene27002:intron | 30.0% | |
| TCAACAATGAAACAATGTCT+AGG | - | chr1.3:2317246-2317265 | None:intergenic | 30.0% | |
| TCATATAGCCAAAAAGAAAG+CGG | - | chr1.3:2315099-2315118 | None:intergenic | 30.0% | |
| TGATATATTTAATCAGCGAG+CGG | + | chr1.3:2316156-2316175 | MS.gene27002:CDS | 30.0% | |
| TGCTCTACTTTACATTGTAT+CGG | + | chr1.3:2315952-2315971 | MS.gene27002:intron | 30.0% | |
| TGTTCTTCTTGTTCTTGAAT+TGG | - | chr1.3:2313681-2313700 | None:intergenic | 30.0% | |
| TGTTGTAACTACTAACTAAC+TGG | - | chr1.3:2313909-2313928 | None:intergenic | 30.0% | |
| TTATGAACAAGCTATCCTAA+AGG | - | chr1.3:2318382-2318401 | None:intergenic | 30.0% | |
| TTGCAGAGTAAAAGAAGAAA+TGG | - | chr1.3:2314626-2314645 | None:intergenic | 30.0% | |
| TTGTTCATCAGTTTCTCATA+AGG | + | chr1.3:2318804-2318823 | MS.gene27002:intron | 30.0% | |
| TTTCTTATGGCAGATTGATA+GGG | + | chr1.3:2319326-2319345 | MS.gene27002:intron | 30.0% | |
| ! | ACGCTTTTGAATCAATTAAC+TGG | + | chr1.3:2317112-2317131 | MS.gene27002:CDS | 30.0% |
| ! | ATTTTATGCGAGATTCAGAA+TGG | - | chr1.3:2316045-2316064 | None:intergenic | 30.0% |
| ! | CTCGCTGATTAAATATATCA+AGG | - | chr1.3:2316156-2316175 | None:intergenic | 30.0% |
| ! | GACTAGTTAGTTGTACTTAT+TGG | + | chr1.3:2314321-2314340 | MS.gene27002:intron | 30.0% |
| ! | GATATCAGAATCATCACTTT+TGG | + | chr1.3:2317777-2317796 | MS.gene27002:CDS | 30.0% |
| ! | GCTTTGTTACCATTTGAAAA+TGG | + | chr1.3:2319590-2319609 | MS.gene27002:CDS | 30.0% |
| ! | TAAGAGTGCAATTAATGCAT+TGG | + | chr1.3:2315625-2315644 | MS.gene27002:CDS | 30.0% |
| ! | TCTGGCATATCTTTTTCTTA+TGG | + | chr1.3:2319313-2319332 | MS.gene27002:intron | 30.0% |
| ! | TGAAATTGTCATTTACGTCA+AGG | + | chr1.3:2318254-2318273 | MS.gene27002:intron | 30.0% |
| ! | TGCTTATTTGCCATCATTTT+AGG | + | chr1.3:2317063-2317082 | MS.gene27002:intron | 30.0% |
| ! | TGGATTTCCTGACATTTTAT+CGG | + | chr1.3:2319744-2319763 | MS.gene27002:intron | 30.0% |
| ! | TTCACATGCTTATTTCTTCT+AGG | + | chr1.3:2318574-2318593 | MS.gene27002:intron | 30.0% |
| ! | TTTTCTTATGGCAGATTGAT+AGG | + | chr1.3:2319325-2319344 | MS.gene27002:intron | 30.0% |
| !! | CACCAAAGTGATTATTTTAC+TGG | + | chr1.3:2314709-2314728 | MS.gene27002:intron | 30.0% |
| !! | GTGCATATCTCTAAAATTTG+TGG | + | chr1.3:2316803-2316822 | MS.gene27002:intron | 30.0% |
| !! | TATTTGCCATCATTTTAGGT+TGG | + | chr1.3:2317067-2317086 | MS.gene27002:intron | 30.0% |
| !! | TGTTTTTGCAGTTTAGAATG+GGG | - | chr1.3:2318465-2318484 | None:intergenic | 30.0% |
| !!! | ATAGTTTTGATTCGGTTTGT+AGG | + | chr1.3:2314453-2314472 | MS.gene27002:intron | 30.0% |
| !!! | TATTGGGAAAATGGTTTTGT+TGG | + | chr1.3:2318036-2318055 | MS.gene27002:intron | 30.0% |
| !!! | TCTACCTTCTTTTGATTTCT+AGG | + | chr1.3:2316510-2316529 | MS.gene27002:intron | 30.0% |
| !!! | TGCTATTTTTTAGCAAATGG+AGG | - | chr1.3:2314054-2314073 | None:intergenic | 30.0% |
| ACCTATAGTAGAAAAGATGG+TGG | + | chr1.3:2318933-2318952 | MS.gene27002:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | + | chr1.3:2318930-2318949 | MS.gene27002:intron | 35.0% | |
| AGTATAAGCAAGCGATTGTT+TGG | + | chr1.3:2315830-2315849 | MS.gene27002:intron | 35.0% | |
| AGTCTAACTTAGTGCATGTT+TGG | - | chr1.3:2314305-2314324 | None:intergenic | 35.0% | |
| ATAGATATCGTATCTGGAAG+TGG | + | chr1.3:2314672-2314691 | MS.gene27002:intron | 35.0% | |
| ATATAGGAATATACCGAGCA+AGG | + | chr1.3:2319773-2319792 | MS.gene27002:intron | 35.0% | |
| ATCAGTAATGTCTCCATCAT+TGG | - | chr1.3:2315295-2315314 | None:intergenic | 35.0% | |
| ATCTGGAAGTGGAATATTTC+AGG | + | chr1.3:2314683-2314702 | MS.gene27002:intron | 35.0% | |
| ATGGAGTTGTTAATCTGGAT+AGG | - | chr1.3:2314763-2314782 | None:intergenic | 35.0% | |
| CAACTTTAGATCCAACTACA+AGG | + | chr1.3:2317167-2317186 | MS.gene27002:CDS | 35.0% | |
| CACTCTGTTAATTCTTTAGG+AGG | + | chr1.3:2319223-2319242 | MS.gene27002:intron | 35.0% | |
| CAGGTCAGTAAAAAATTACC+TGG | + | chr1.3:2317196-2317215 | MS.gene27002:intron | 35.0% | |
| CATCCCAAATAATGTGGTAT+AGG | - | chr1.3:2318236-2318255 | None:intergenic | 35.0% | |
| GAAAATAAGCTTAGGTGGTT+TGG | + | chr1.3:2318955-2318974 | MS.gene27002:intron | 35.0% | |
| GCAACCTAGAAATCAAAAGA+AGG | - | chr1.3:2316517-2316536 | None:intergenic | 35.0% | |
| GCATGACAATAAACAACAAC+AGG | - | chr1.3:2315067-2315086 | None:intergenic | 35.0% | |
| GGAAGATTTGGATCCAAATA+TGG | + | chr1.3:2319078-2319097 | MS.gene27002:intron | 35.0% | |
| GGGTGAAAAACAAATAGAAG+TGG | + | chr1.3:2316624-2316643 | MS.gene27002:CDS | 35.0% | |
| GGTGAAGTTAGTGATTCATT+TGG | + | chr1.3:2314517-2314536 | MS.gene27002:CDS | 35.0% | |
| GTTAAGAGAGAAAGAGGATA+AGG | - | chr1.3:2313586-2313605 | None:intergenic | 35.0% | |
| TAAAACCAACAGTGTCTGTT+AGG | - | chr1.3:2317579-2317598 | None:intergenic | 35.0% | |
| TACACTGATCCATTTGTCTT+CGG | - | chr1.3:2318494-2318513 | None:intergenic | 35.0% | |
| TACCTCGTCTAACAAAAATG+TGG | + | chr1.3:2316560-2316579 | MS.gene27002:CDS | 35.0% | |
| TACGAATCCGATAAAATGTC+AGG | - | chr1.3:2319754-2319773 | None:intergenic | 35.0% | |
| TAGAAGAACTAGACAACTTC+TGG | + | chr1.3:2317873-2317892 | MS.gene27002:intron | 35.0% | |
| TATAGGAATATACCGAGCAA+GGG | + | chr1.3:2319774-2319793 | MS.gene27002:intron | 35.0% | |
| TATTCTTTAACAGGACTCCA+TGG | + | chr1.3:2319556-2319575 | MS.gene27002:intron | 35.0% | |
| TCAACAGTTATTCAGGATAC+TGG | - | chr1.3:2316233-2316252 | None:intergenic | 35.0% | |
| TCAGTAATGTCTCCATCATT+GGG | - | chr1.3:2315294-2315313 | None:intergenic | 35.0% | |
| TCTCCTTACTACAGAATCTA+CGG | - | chr1.3:2318998-2319017 | None:intergenic | 35.0% | |
| TGCAGTTCAAGACAAACTAA+AGG | + | chr1.3:2319446-2319465 | MS.gene27002:CDS | 35.0% | |
| TGGAGTTGTTAATCTGGATA+GGG | - | chr1.3:2314762-2314781 | None:intergenic | 35.0% | |
| TGTAACGTTAAGAGAGAAAG+AGG | - | chr1.3:2313592-2313611 | None:intergenic | 35.0% | |
| TTGTTCCAAACCATCAACTT+TGG | - | chr1.3:2318014-2318033 | None:intergenic | 35.0% | |
| ! | AACACATGAAGCATCTTTAC+AGG | + | chr1.3:2316180-2316199 | MS.gene27002:CDS | 35.0% |
| ! | AAGTCTGAAACTGAGTCATA+TGG | - | chr1.3:2315535-2315554 | None:intergenic | 35.0% |
| ! | AATATGATTCGGATATCGTG+TGG | + | chr1.3:2319490-2319509 | MS.gene27002:intron | 35.0% |
| ! | AGAAGGTAGAGTATCAGAAT+AGG | - | chr1.3:2316500-2316519 | None:intergenic | 35.0% |
| ! | ATGGTTTGGAACAAGGTATT+GGG | + | chr1.3:2318020-2318039 | MS.gene27002:intron | 35.0% |
| ! | GAAGGTAGAGTATCAGAATA+GGG | - | chr1.3:2316499-2316518 | None:intergenic | 35.0% |
| ! | GTCCTTGTTTCGAACTAAAA+GGG | + | chr1.3:2318516-2318535 | MS.gene27002:intron | 35.0% |
| ! | GTTGAATACCGCTTTCTTTT+TGG | + | chr1.3:2315088-2315107 | MS.gene27002:intron | 35.0% |
| ! | TCCACCATCTTTTCTACTAT+AGG | - | chr1.3:2318937-2318956 | None:intergenic | 35.0% |
| ! | TGTCCTTGTTTCGAACTAAA+AGG | + | chr1.3:2318515-2318534 | MS.gene27002:intron | 35.0% |
| ! | TTATTTTCACGAGCTCATAG+TGG | - | chr1.3:2314178-2314197 | None:intergenic | 35.0% |
| ! | TTCCCTTTTTCTTCTCCTAT+CGG | + | chr1.3:2315497-2315516 | MS.gene27002:intron | 35.0% |
| ! | TTTTATCATCCCACAACCAA+GGG | - | chr1.3:2317412-2317431 | None:intergenic | 35.0% |
| ! | TTTTCTCAACCATTCCAACT+TGG | - | chr1.3:2319637-2319656 | None:intergenic | 35.0% |
| ! | TTTTTATCATCCCACAACCA+AGG | - | chr1.3:2317413-2317432 | None:intergenic | 35.0% |
| ! | TTTTTGTTAGACGAGGTAGT+TGG | - | chr1.3:2316558-2316577 | None:intergenic | 35.0% |
| !! | AAAGTTGATGGTTTGGAACA+AGG | + | chr1.3:2318013-2318032 | MS.gene27002:CDS | 35.0% |
| !! | AGATGGTGGAAAATAAGCTT+AGG | + | chr1.3:2318947-2318966 | MS.gene27002:intron | 35.0% |
| !! | AGTAGTGGCTTTATCTTCAT+CGG | - | chr1.3:2313721-2313740 | None:intergenic | 35.0% |
| !! | CAATTCCAAAGTTGATGGTT+TGG | + | chr1.3:2318006-2318025 | MS.gene27002:CDS | 35.0% |
| !! | GTTTTTGCAGTTTAGAATGG+GGG | - | chr1.3:2318464-2318483 | None:intergenic | 35.0% |
| !! | TCTTCTAGGATAGTTGATTC+AGG | + | chr1.3:2318588-2318607 | MS.gene27002:intron | 35.0% |
| !! | TCTTGTGTGGGTTGAATTTT+AGG | + | chr1.3:2317489-2317508 | MS.gene27002:intron | 35.0% |
| !! | TTTTGAAGAGAAAGCGTATC+TGG | + | chr1.3:2314477-2314496 | MS.gene27002:CDS | 35.0% |
| !! | TTTTTGCAGTTTAGAATGGG+GGG | - | chr1.3:2318463-2318482 | None:intergenic | 35.0% |
| !!! | AACTGCTTTTGGTTCAAAAC+TGG | + | chr1.3:2318767-2318786 | MS.gene27002:intron | 35.0% |
| AAACTAACCAAGGATACCAC+AGG | - | chr1.3:2316969-2316988 | None:intergenic | 40.0% | |
| AACAAACCTCTCTTCCGTTA+CGG | - | chr1.3:2313806-2313825 | None:intergenic | 40.0% | |
| AATTCAACCCACACAAGACT+AGG | - | chr1.3:2317487-2317506 | None:intergenic | 40.0% | |
| ACAAATCAGCCGAAGACAAA+TGG | + | chr1.3:2318482-2318501 | MS.gene27002:intron | 40.0% | |
| ACTCCTTTCCATTCTTCATC+TGG | - | chr1.3:2317552-2317571 | None:intergenic | 40.0% | |
| AGCTGATACTGCTGGATTAT+TGG | + | chr1.3:2314573-2314592 | MS.gene27002:CDS | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr1.3:2319008-2319027 | MS.gene27002:intron | 40.0% | |
| ATGAAATGCGCATGCGTTAA+CGG | + | chr1.3:2313429-2313448 | MS.gene27002:CDS | 40.0% | |
| ATTAGAGAGAGAGAGAGAGT+TGG | + | chr1.3:2318904-2318923 | MS.gene27002:intron | 40.0% | |
| ATTTAACTGTGCCCCAATGA+TGG | + | chr1.3:2315279-2315298 | MS.gene27002:intron | 40.0% | |
| CACAGCATTTATCTGTTGCT+CGG | - | chr1.3:2317955-2317974 | None:intergenic | 40.0% | |
| CACGAATTGCTTAAGCCTTT+AGG | + | chr1.3:2318364-2318383 | MS.gene27002:intron | 40.0% | |
| CAGTAATGTCTCCATCATTG+GGG | - | chr1.3:2315293-2315312 | None:intergenic | 40.0% | |
| CATGTTCATGCTCGTATACT+TGG | + | chr1.3:2315181-2315200 | MS.gene27002:intron | 40.0% | |
| CCAAAAGCAGTTCATAATCC+AGG | - | chr1.3:2318759-2318778 | None:intergenic | 40.0% | |
| CTAGGTTGCATTAGCACAAA+TGG | + | chr1.3:2316528-2316547 | MS.gene27002:intron | 40.0% | |
| CTCCTTACTACAGAATCTAC+GGG | - | chr1.3:2318997-2319016 | None:intergenic | 40.0% | |
| CTGATAACCTTCCTTATAGC+GGG | + | chr1.3:2314079-2314098 | MS.gene27002:intron | 40.0% | |
| CTGTTACAGCTTGAACATTC+TGG | + | chr1.3:2319295-2319314 | MS.gene27002:intron | 40.0% | |
| CTTGATATATGTCCCTTGCT+CGG | - | chr1.3:2319789-2319808 | None:intergenic | 40.0% | |
| GACTGTTGCAAAACTAACCA+AGG | - | chr1.3:2316979-2316998 | None:intergenic | 40.0% | |
| GCACAATATTGTTTACAGGC+AGG | + | chr1.3:2315411-2315430 | MS.gene27002:intron | 40.0% | |
| GCTGATAACCTTCCTTATAG+CGG | + | chr1.3:2314078-2314097 | MS.gene27002:intron | 40.0% | |
| GGTATACTTCTGGTAAGTAG+AGG | - | chr1.3:2314605-2314624 | None:intergenic | 40.0% | |
| GTATGCATATCTGCCTTAAG+TGG | + | chr1.3:2319399-2319418 | MS.gene27002:CDS | 40.0% | |
| TAAAGTAGAGCAGAACAGTC+TGG | - | chr1.3:2315944-2315963 | None:intergenic | 40.0% | |
| TAATTGGAACCATAAGAGCC+AGG | + | chr1.3:2315772-2315791 | MS.gene27002:intron | 40.0% | |
| TATTACCAGAAACAGAGCTC+TGG | + | chr1.3:2316453-2316472 | MS.gene27002:intron | 40.0% | |
| TCATCAGCATGATGAAACAG+AGG | - | chr1.3:2315344-2315363 | None:intergenic | 40.0% | |
| TCCCGATAGGAGAAGAAAAA+GGG | - | chr1.3:2315502-2315521 | None:intergenic | 40.0% | |
| TGAAGTTCTTCAGTGTTGTG+CGG | - | chr1.3:2313615-2313634 | None:intergenic | 40.0% | |
| TGAATCAGTTCTTCCTTCAC+CGG | + | chr1.3:2319248-2319267 | MS.gene27002:intron | 40.0% | |
| TGATAACCTTCCTTATAGCG+GGG | + | chr1.3:2314080-2314099 | MS.gene27002:intron | 40.0% | |
| TGCAAAAGAGGACTTTCCTA+TGG | + | chr1.3:2316293-2316312 | MS.gene27002:intron | 40.0% | |
| TGGTGCATGTGATTGATATC+AGG | + | chr1.3:2317797-2317816 | MS.gene27002:CDS | 40.0% | |
| TGGTGGAAAATAAGCTTAGG+TGG | + | chr1.3:2318950-2318969 | MS.gene27002:intron | 40.0% | |
| TGTCCAGATGAAGAATGGAA+AGG | + | chr1.3:2317546-2317565 | MS.gene27002:intron | 40.0% | |
| TTAACAGGACTCCATGGTAT+GGG | + | chr1.3:2319562-2319581 | MS.gene27002:intron | 40.0% | |
| TTAGAGAGAGAGAGAGAGTT+GGG | + | chr1.3:2318905-2318924 | MS.gene27002:intron | 40.0% | |
| TTTAACAGGACTCCATGGTA+TGG | + | chr1.3:2319561-2319580 | MS.gene27002:intron | 40.0% | |
| TTTCTCCTAACAGACACTGT+TGG | + | chr1.3:2317571-2317590 | MS.gene27002:CDS | 40.0% | |
| ! | AGAAGGTCCCCATTTTCAAA+TGG | - | chr1.3:2319602-2319621 | None:intergenic | 40.0% |
| ! | AGCTTCTAGCCTGATTTTCT+GGG | - | chr1.3:2319361-2319380 | None:intergenic | 40.0% |
| ! | CCTGGATTATGAACTGCTTT+TGG | + | chr1.3:2318756-2318775 | MS.gene27002:intron | 40.0% |
| ! | CTAGGATAGTTGATTCAGGA+CGG | + | chr1.3:2318592-2318611 | MS.gene27002:intron | 40.0% |
| ! | GATGGTTTGGAACAAGGTAT+TGG | + | chr1.3:2318019-2318038 | MS.gene27002:intron | 40.0% |
| ! | GCTTTTGTCCAGATGAAGAA+TGG | + | chr1.3:2317541-2317560 | MS.gene27002:intron | 40.0% |
| ! | GTCCACATTTTTGTTAGACG+AGG | - | chr1.3:2316565-2316584 | None:intergenic | 40.0% |
| ! | TCCCTTTTTCTTCTCCTATC+GGG | + | chr1.3:2315498-2315517 | MS.gene27002:intron | 40.0% |
| !! | AACCATTCCAACTTGGTGTA+TGG | - | chr1.3:2319630-2319649 | None:intergenic | 40.0% |
| !! | AACCTGGAAAAGGTTTTTGG+TGG | + | chr1.3:2316097-2316116 | MS.gene27002:CDS | 40.0% |
| !! | AAGCTTTTTCCCACTAAGTG+GGG | - | chr1.3:2319147-2319166 | None:intergenic | 40.0% |
| !! | CAAGAAACCTAGTCTTGTGT+GGG | + | chr1.3:2317477-2317496 | MS.gene27002:intron | 40.0% |
| !! | CAAGCTTTTTCCCACTAAGT+GGG | - | chr1.3:2319148-2319167 | None:intergenic | 40.0% |
| !! | GGAACAAGGTATTGGGAAAA+TGG | + | chr1.3:2318027-2318046 | MS.gene27002:intron | 40.0% |
| !! | GTAGTGGCTTTATCTTCATC+GGG | - | chr1.3:2313720-2313739 | None:intergenic | 40.0% |
| !! | TAGGTTGGTTATACGAATGC+TGG | + | chr1.3:2317082-2317101 | MS.gene27002:intron | 40.0% |
| !! | TTGATGATGAGCTATCAGCT+GGG | + | chr1.3:2315666-2315685 | MS.gene27002:CDS | 40.0% |
| !! | TTTACGTCAAGGACTAGCTA+AGG | + | chr1.3:2318265-2318284 | MS.gene27002:intron | 40.0% |
| !! | TTTGATGATGAGCTATCAGC+TGG | + | chr1.3:2315665-2315684 | MS.gene27002:CDS | 40.0% |
| !!! | AGCCCTTTTAGTTCGAAACA+AGG | - | chr1.3:2318521-2318540 | None:intergenic | 40.0% |
| AAGCAACCTCGCAAAACGTA+GGG | - | chr1.3:2319822-2319841 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr1.3:2319011-2319030 | MS.gene27002:intron | 45.0% | |
| ACAAATCCTCAAGAGCAACC+TGG | - | chr1.3:2315793-2315812 | None:intergenic | 45.0% | |
| ACCGAAAGCAGTACCGTAAT+CGG | + | chr1.3:2316925-2316944 | MS.gene27002:CDS | 45.0% | |
| ACCTGTACTCTCCTTGTAGT+TGG | - | chr1.3:2317181-2317200 | None:intergenic | 45.0% | |
| ACTCTTGAGTCTTGACCACT+TGG | - | chr1.3:2318427-2318446 | None:intergenic | 45.0% | |
| ATATCTGCCTTAAGTGGCGA+TGG | + | chr1.3:2319405-2319424 | MS.gene27002:CDS | 45.0% | |
| ATTTATCTGTTGCTCGGCCA+GGG | - | chr1.3:2317949-2317968 | None:intergenic | 45.0% | |
| ATTTGCCAGAGCTCTGTTTC+TGG | - | chr1.3:2316461-2316480 | None:intergenic | 45.0% | |
| CAGAAAATCAGGCTAGAAGC+TGG | + | chr1.3:2319360-2319379 | MS.gene27002:CDS | 45.0% | |
| CCACTTAGTGGGAAAAAGCT+TGG | + | chr1.3:2319146-2319165 | MS.gene27002:intron | 45.0% | |
| CCTGCAGAGAGCAGAAAAAA+TGG | - | chr1.3:2317729-2317748 | None:intergenic | 45.0% | |
| CGAGCAACAGATAAATGCTG+TGG | + | chr1.3:2317953-2317972 | MS.gene27002:CDS | 45.0% | |
| CGAGCAAGGGACATATATCA+AGG | + | chr1.3:2319787-2319806 | MS.gene27002:CDS | 45.0% | |
| CTAGTGATCCCCAGAAAATC+AGG | + | chr1.3:2319349-2319368 | MS.gene27002:CDS | 45.0% | |
| CTTCAAGTGCACAGTAAAGC+CGG | - | chr1.3:2319270-2319289 | None:intergenic | 45.0% | |
| GACCCGTAGATTCTGTAGTA+AGG | + | chr1.3:2318992-2319011 | MS.gene27002:intron | 45.0% | |
| GAGGAAATGACTGTGCTGTA+AGG | - | chr1.3:2317377-2317396 | None:intergenic | 45.0% | |
| GCTACCTGTTGATCATAGTC+TGG | + | chr1.3:2319681-2319700 | MS.gene27002:intron | 45.0% | |
| GCTTTATCTTCATCGGGAGT+TGG | - | chr1.3:2313714-2313733 | None:intergenic | 45.0% | |
| GGTACACACAGTTGTCTCAT+AGG | - | chr1.3:2319848-2319867 | None:intergenic | 45.0% | |
| GGTTATCGATGTTATCGTCG+TGG | - | chr1.3:2313773-2313792 | None:intergenic | 45.0% | |
| GTCCCGATAGGAGAAGAAAA+AGG | - | chr1.3:2315503-2315522 | None:intergenic | 45.0% | |
| TAAGCAACCTCGCAAAACGT+AGG | - | chr1.3:2319823-2319842 | None:intergenic | 45.0% | |
| TAGAGAGAGAGAGAGAGTTG+GGG | + | chr1.3:2318906-2318925 | MS.gene27002:intron | 45.0% | |
| TAGTTTCCCCGCTATAAGGA+AGG | - | chr1.3:2314089-2314108 | None:intergenic | 45.0% | |
| TCTGCCAGACTATGATCAAC+AGG | - | chr1.3:2319688-2319707 | None:intergenic | 45.0% | |
| TGATGAAACAGAGGAGTCTG+AGG | - | chr1.3:2315335-2315354 | None:intergenic | 45.0% | |
| TGGCAATATGTTGTCCCGAT+AGG | - | chr1.3:2315515-2315534 | None:intergenic | 45.0% | |
| TTACAGTGTCCCTTGGTTGT+GGG | + | chr1.3:2317400-2317419 | MS.gene27002:intron | 45.0% | |
| TTATCTTCATCGGGAGTTGG+AGG | - | chr1.3:2313711-2313730 | None:intergenic | 45.0% | |
| TTGTATGCCATCGCCACTTA+AGG | - | chr1.3:2319415-2319434 | None:intergenic | 45.0% | |
| TTTACAGTGTCCCTTGGTTG+TGG | + | chr1.3:2317399-2317418 | MS.gene27002:intron | 45.0% | |
| TTTGGGTGTAGTCACTGTAG+CGG | - | chr1.3:2315979-2315998 | None:intergenic | 45.0% | |
| ! | ATGCATGGGCTTTGACAGAT+CGG | + | chr1.3:2316867-2316886 | MS.gene27002:intron | 45.0% |
| ! | CACCATACACCAAGTTGGAA+TGG | + | chr1.3:2319625-2319644 | MS.gene27002:CDS | 45.0% |
| ! | CAGCTTCTAGCCTGATTTTC+TGG | - | chr1.3:2319362-2319381 | None:intergenic | 45.0% |
| ! | CGCAACCTGGAAAAGGTTTT+TGG | + | chr1.3:2316094-2316113 | MS.gene27002:CDS | 45.0% |
| ! | CTCCACCAAAAACCTTTTCC+AGG | - | chr1.3:2316102-2316121 | None:intergenic | 45.0% |
| ! | GAAACAGAGCTCTGGCAAAT+AGG | + | chr1.3:2316461-2316480 | MS.gene27002:intron | 45.0% |
| ! | GAAGAGAAAGCGTATCTGGT+TGG | + | chr1.3:2314481-2314500 | MS.gene27002:CDS | 45.0% |
| ! | GCTTCTAGCCTGATTTTCTG+GGG | - | chr1.3:2319360-2319379 | None:intergenic | 45.0% |
| ! | TCCAACTACAAGGAGAGTAC+AGG | + | chr1.3:2317177-2317196 | MS.gene27002:CDS | 45.0% |
| ! | TTTTCAGTAAGAAGGCGGTG+AGG | + | chr1.3:2315863-2315882 | MS.gene27002:intron | 45.0% |
| ! | TTTTTCCCACTAAGTGGGGT+CGG | - | chr1.3:2319143-2319162 | None:intergenic | 45.0% |
| !! | CCAAGCTTTTTCCCACTAAG+TGG | - | chr1.3:2319149-2319168 | None:intergenic | 45.0% |
| !! | CTGGTTGGTGTTGAGAGAAA+AGG | + | chr1.3:2314496-2314515 | MS.gene27002:CDS | 45.0% |
| !! | GCAAGAAACCTAGTCTTGTG+TGG | + | chr1.3:2317476-2317495 | MS.gene27002:intron | 45.0% |
| !!! | CCATTTTTTCTGCTCTCTGC+AGG | + | chr1.3:2317726-2317745 | MS.gene27002:intron | 45.0% |
| !!! | AATAATAAATTATTCATTTT+GGG | - | chr1.3:2315996-2316015 | None:intergenic | 5.0% |
| !!! | TAATAATAAATTATTCATTT+TGG | - | chr1.3:2315997-2316016 | None:intergenic | 5.0% |
| AAATGCGCATGCGTTAACGG+TGG | + | chr1.3:2313432-2313451 | MS.gene27002:CDS | 50.0% | |
| AACCGCTTCAAGCTCCGTAA+CGG | + | chr1.3:2313789-2313808 | MS.gene27002:CDS | 50.0% | |
| ACTCACCTTGAGCGTCAATC+AGG | + | chr1.3:2316583-2316602 | MS.gene27002:CDS | 50.0% | |
| AGCAACCTCGCAAAACGTAG+GGG | - | chr1.3:2319821-2319840 | None:intergenic | 50.0% | |
| CAAAGCTTCCACCCATACCA+TGG | - | chr1.3:2319576-2319595 | None:intergenic | 50.0% | |
| CAATCAGGAGGACAGGTGAA+GGG | + | chr1.3:2316598-2316617 | MS.gene27002:CDS | 50.0% | |
| CAGAGCCAATGTACGTCCTA+GGG | - | chr1.3:2315589-2315608 | None:intergenic | 50.0% | |
| CAGAGTCTCTCATGACCAAG+TGG | + | chr1.3:2318409-2318428 | MS.gene27002:intron | 50.0% | |
| CATTTATCTGTTGCTCGGCC+AGG | - | chr1.3:2317950-2317969 | None:intergenic | 50.0% | |
| CCAAACCCTAGGACGTACAT+TGG | + | chr1.3:2315581-2315600 | MS.gene27002:CDS | 50.0% | |
| CCAAGGGACACTGTAAACAG+AGG | - | chr1.3:2317396-2317415 | None:intergenic | 50.0% | |
| CCAATGTACGTCCTAGGGTT+TGG | - | chr1.3:2315584-2315603 | None:intergenic | 50.0% | |
| CCTCTGTTTACAGTGTCCCT+TGG | + | chr1.3:2317393-2317412 | MS.gene27002:intron | 50.0% | |
| CGATGTCGCGTTGGATGTTA+CGG | + | chr1.3:2318860-2318879 | MS.gene27002:intron | 50.0% | |
| CTCAGCACCATACACCAAGT+TGG | + | chr1.3:2319620-2319639 | MS.gene27002:CDS | 50.0% | |
| GAGCAGTTAGCTGATACTGC+TGG | + | chr1.3:2314565-2314584 | MS.gene27002:CDS | 50.0% | |
| GATGAGCTATCAGCTGGGTA+AGG | + | chr1.3:2315671-2315690 | MS.gene27002:intron | 50.0% | |
| GATGTCGCGTTGGATGTTAC+GGG | + | chr1.3:2318861-2318880 | MS.gene27002:intron | 50.0% | |
| GATTCAGGACGGCAACAAGA+GGG | + | chr1.3:2318603-2318622 | MS.gene27002:intron | 50.0% | |
| GCCGATTACGGTACTGCTTT+CGG | - | chr1.3:2316929-2316948 | None:intergenic | 50.0% | |
| TAAGAGCCAGGTTGCTCTTG+AGG | + | chr1.3:2315784-2315803 | MS.gene27002:intron | 50.0% | |
| TACTGATCCCTGCTGATCCT+AGG | + | chr1.3:2316065-2316084 | MS.gene27002:intron | 50.0% | |
| TCAATCAGGAGGACAGGTGA+AGG | + | chr1.3:2316597-2316616 | MS.gene27002:CDS | 50.0% | |
| TGATTCAGGACGGCAACAAG+AGG | + | chr1.3:2318602-2318621 | MS.gene27002:intron | 50.0% | |
| TGGAAGTAAAACGGCGTCGT+TGG | - | chr1.3:2313661-2313680 | None:intergenic | 50.0% | |
| TTCCGTTACGGAGCTTGAAG+CGG | - | chr1.3:2313794-2313813 | None:intergenic | 50.0% | |
| TTCTGATATCTCCTCCAGCG+TGG | - | chr1.3:2317767-2317786 | None:intergenic | 50.0% | |
| TTTATCTGTTGCTCGGCCAG+GGG | - | chr1.3:2317948-2317967 | None:intergenic | 50.0% | |
| TTTCTGCTCTCTGCAGGTTG+CGG | + | chr1.3:2317732-2317751 | MS.gene27002:intron | 50.0% | |
| ! | CAAGAGCAACCTGGCTCTTA+TGG | - | chr1.3:2315784-2315803 | None:intergenic | 50.0% |
| ! | CAGCTAGTTTCCCCGCTATA+AGG | - | chr1.3:2314093-2314112 | None:intergenic | 50.0% |
| ! | CTTGGTGTATGGTGCTGAGA+AGG | - | chr1.3:2319619-2319638 | None:intergenic | 50.0% |
| ! | GTACTGAGAGACGCCGATTA+CGG | - | chr1.3:2316941-2316960 | None:intergenic | 50.0% |
| ACAGGACTCCATGGTATGGG+TGG | + | chr1.3:2319565-2319584 | MS.gene27002:intron | 55.0% | |
| ACCAAGGATACCACAGGCAC+AGG | - | chr1.3:2316963-2316982 | None:intergenic | 55.0% | |
| ACCTGTGCCTGTGGTATCCT+TGG | + | chr1.3:2316959-2316978 | MS.gene27002:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1.3:2319135-2319154 | None:intergenic | 55.0% | |
| AGGAGGACAGGTGAAGGGAA+TGG | + | chr1.3:2316603-2316622 | MS.gene27002:CDS | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1.3:2319134-2319153 | MS.gene27002:intron | 55.0% | |
| CACCTTGAGCGTCAATCAGG+AGG | + | chr1.3:2316586-2316605 | MS.gene27002:CDS | 55.0% | |
| CATGAATTGCAGTCACCCCC+TGG | + | chr1.3:2317929-2317948 | MS.gene27002:intron | 55.0% | |
| CCAGAGCCAATGTACGTCCT+AGG | - | chr1.3:2315590-2315609 | None:intergenic | 55.0% | |
| CGAAGATGACGATGTCGCGT+TGG | + | chr1.3:2318851-2318870 | MS.gene27002:intron | 55.0% | |
| CGCGTTGGATGTTACGGGAT+AGG | + | chr1.3:2318866-2318885 | MS.gene27002:intron | 55.0% | |
| GCAACTGCGCAACCTGGAAA+AGG | + | chr1.3:2316087-2316106 | MS.gene27002:CDS | 55.0% | |
| GCAGTTGCCTAGGATCAGCA+GGG | - | chr1.3:2316075-2316094 | None:intergenic | 55.0% | |
| GGAGGACAGGTGAAGGGAAT+GGG | + | chr1.3:2316604-2316623 | MS.gene27002:CDS | 55.0% | |
| GTCCTCCTGATTGACGCTCA+AGG | - | chr1.3:2316591-2316610 | None:intergenic | 55.0% | |
| GTGCACAGTAAAGCCGGTGA+AGG | - | chr1.3:2319264-2319283 | None:intergenic | 55.0% | |
| TCTCTCAGTACCTGTGCCTG+TGG | + | chr1.3:2316950-2316969 | MS.gene27002:CDS | 55.0% | |
| TGAGCGTCAATCAGGAGGAC+AGG | + | chr1.3:2316591-2316610 | MS.gene27002:CDS | 55.0% | |
| TGGAGCAGATGTTCTTGCCG+AGG | + | chr1.3:2317132-2317151 | MS.gene27002:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1.3:2319135-2319154 | MS.gene27002:intron | 55.0% | |
| TTATCTGTTGCTCGGCCAGG+GGG | - | chr1.3:2317947-2317966 | None:intergenic | 55.0% | |
| ! | ATGTGCCCCTACGTTTTGCG+AGG | + | chr1.3:2319813-2319832 | MS.gene27002:CDS | 55.0% |
| ! | CAAGCTCCGTAACGGAAGAG+AGG | + | chr1.3:2313797-2313816 | MS.gene27002:CDS | 55.0% |
| ! | GGCTTGCTTCTCCAAACCCT+AGG | + | chr1.3:2315570-2315589 | MS.gene27002:intron | 55.0% |
| !! | CCTAGGACGTACATTGGCTC+TGG | + | chr1.3:2315587-2315606 | MS.gene27002:CDS | 55.0% |
| CGCAGTTGCCTAGGATCAGC+AGG | - | chr1.3:2316076-2316095 | None:intergenic | 60.0% | |
| TCCAGGTTGCGCAGTTGCCT+AGG | - | chr1.3:2316085-2316104 | None:intergenic | 60.0% | |
| TCCTAGGCAACTGCGCAACC+TGG | + | chr1.3:2316081-2316100 | MS.gene27002:intron | 60.0% | |
| TGCGCATGCGTTAACGGTGG+TGG | + | chr1.3:2313435-2313454 | MS.gene27002:CDS | 60.0% | |
| !! | CTCCTCCAGCGTGGCTCTGA+AGG | - | chr1.3:2317758-2317777 | None:intergenic | 65.0% |
| GGCCTTCAGAGCCACGCTGG+AGG | + | chr1.3:2317753-2317772 | MS.gene27002:CDS | 70.0% | |
| TGCGGCCTTCAGAGCCACGC+TGG | + | chr1.3:2317750-2317769 | MS.gene27002:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2313426 | 2319877 | 2313426 | ID=MS.gene27002 |
| chr1.3 | mRNA | 2313426 | 2319877 | 2313426 | ID=MS.gene27002.t1;Parent=MS.gene27002 |
| chr1.3 | exon | 2313426 | 2313818 | 2313426 | ID=MS.gene27002.t1.exon1;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2313426 | 2313818 | 2313426 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2314475 | 2314617 | 2314475 | ID=MS.gene27002.t1.exon2;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2314475 | 2314617 | 2314475 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2315571 | 2315687 | 2315571 | ID=MS.gene27002.t1.exon3;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2315571 | 2315687 | 2315571 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2316087 | 2316201 | 2316087 | ID=MS.gene27002.t1.exon4;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2316087 | 2316201 | 2316087 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2316532 | 2316669 | 2316532 | ID=MS.gene27002.t1.exon5;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2316532 | 2316669 | 2316532 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2316885 | 2316980 | 2316885 | ID=MS.gene27002.t1.exon6;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2316885 | 2316980 | 2316885 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2317085 | 2317198 | 2317085 | ID=MS.gene27002.t1.exon7;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2317085 | 2317198 | 2317085 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2317553 | 2317621 | 2317553 | ID=MS.gene27002.t1.exon8;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2317553 | 2317621 | 2317553 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2317748 | 2317818 | 2317748 | ID=MS.gene27002.t1.exon9;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2317748 | 2317818 | 2317748 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2317941 | 2318034 | 2317941 | ID=MS.gene27002.t1.exon10;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2317941 | 2318034 | 2317941 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2319339 | 2319467 | 2319339 | ID=MS.gene27002.t1.exon11;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2319339 | 2319467 | 2319339 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2319569 | 2319658 | 2319569 | ID=MS.gene27002.t1.exon12;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2319569 | 2319658 | 2319569 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| chr1.3 | exon | 2319779 | 2319877 | 2319779 | ID=MS.gene27002.t1.exon13;Parent=MS.gene27002.t1 |
| chr1.3 | CDS | 2319779 | 2319877 | 2319779 | ID=cds.MS.gene27002.t1;Parent=MS.gene27002.t1 |
| Gene Sequence |
| Protein sequence |
