AlfalfaGEDB | MS.gene07312

M. sativa cultivar XinJiangDaYe / MS.gene07312

KEGG: -
GO: -
PFAM: PF13225.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07312.t1	XP_003591385.1	96	224	9	0	1	224	37	260	6.30E-124	453.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07312.t1	Q7XA78	35.2	210	118	6	4	203	53	254	2.2e-29	130.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07312.t1	G7ICW5	96.0	224	9	0	1	224	37	260	4.5e-124	453.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene07312	0.853656	2.07E-61	-1.69E-46
MS.gene049171	MS.gene07312	0.846599	1.96E-59	-1.69E-46
MS.gene049222	MS.gene07312	0.858956	5.77E-63	-1.69E-46
MS.gene049285	MS.gene07312	0.823241	1.54E-53	-1.69E-46
MS.gene049320	MS.gene07312	0.813604	2.35E-51	-1.69E-46
MS.gene049609	MS.gene07312	0.88897	3.68E-73	-1.69E-46
MS.gene049633	MS.gene07312	0.827221	1.76E-54	-1.69E-46
MS.gene049805	MS.gene07312	0.8517	7.48E-61	-1.69E-46
MS.gene050163	MS.gene07312	0.808134	3.59E-50	-1.69E-46
MS.gene050170	MS.gene07312	0.819632	1.05E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07312.t1	MTR_1g086840	95.982	224	9	0	1	224	37	260	9.91e-163	449
MS.gene07312.t1	MTR_1g086840	84.409	186	26	2	1	185	37	220	3.12e-110	315
MS.gene07312.t1	MTR_7g095920	36.181	199	120	4	6	203	45	237	8.61e-38	132
MS.gene07312.t1	MTR_1g471050	36.082	194	117	4	11	203	53	240	7.91e-36	127
MS.gene07312.t1	MTR_3g080840	32.906	234	128	7	6	223	43	263	4.78e-35	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07312.t1	AT4G01995	68.900	209	63	1	5	213	46	252	1.25e-100	293
MS.gene07312.t1	AT4G01995	68.900	209	63	1	5	213	15	221	1.46e-100	291
MS.gene07312.t1	AT4G01995	65.625	128	44	0	5	132	46	173	1.32e-51	166
MS.gene07312.t1	AT1G64680	36.098	205	110	6	8	200	36	231	2.64e-39	136
MS.gene07312.t1	AT1G03055	35.071	211	119	6	3	203	52	254	1.43e-36	129
MS.gene07312.t1	AT1G64680	34.463	177	95	6	8	172	36	203	1.61e-28	107

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Find 74 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTATAACAGGAAGT+GGG	0.571265	1.4:+69215344	MS.gene07312:intron
AAAATGCTCATAGCTCCTAT+AGG	0.484909	1.4:+69216392	MS.gene07312:CDS
AAAGAGTGAATACAAGCCTG+GGG	0.716715	1.4:+69215174	MS.gene07312:CDS
AAAGTTGCCGCTATAATGGT+TGG	0.601706	1.4:+69216422	MS.gene07312:CDS
AAATGCTTCCCTACGAAGAT+TGG	0.373694	1.4:+69217358	MS.gene07312:CDS
AACAAATCATCAATAACCCC+AGG	0.586570	1.4:-69215190	None:intergenic
AACCTGTGTTGGAAACTTAC+AGG	0.345038	1.4:-69216806	None:intergenic
AAGTTGGGCTCCATGAGTAA+TGG	0.572536	1.4:-69217152	None:intergenic
AATCTTCGTAGGGAAGCATT+TGG	0.450960	1.4:-69217356	None:intergenic
AATTCTGTAGACCTATCAGA+TGG	0.614406	1.4:+69216609	MS.gene07312:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTTACTTTCTCTTTCTA+AGG	-	chr1.4:69215850-69215869	None:intergenic	30.0%
GAAAATACTATAACAGGAAG+TGG	+	chr1.4:69215343-69215362	MS.gene07312:intron	30.0%
TCAGTTAAAGACAAATCGTT+TGG	-	chr1.4:69216978-69216997	None:intergenic	30.0%
AAAATGCTCATAGCTCCTAT+AGG	+	chr1.4:69216392-69216411	MS.gene07312:CDS	35.0%
AAATGCAACAACTTCAAAGC+TGG	-	chr1.4:69217069-69217088	None:intergenic	35.0%
AACAAATCATCAATAACCCC+AGG	-	chr1.4:69215193-69215212	None:intergenic	35.0%
AACTCTCAAAACCAAAATGG+TGG	-	chr1.4:69216001-69216020	None:intergenic	35.0%
AATTCTGTAGACCTATCAGA+TGG	+	chr1.4:69216609-69216628	MS.gene07312:CDS	35.0%
ACAGCTATAATCAGCAAAGT+TGG	-	chr1.4:69217171-69217190	None:intergenic	35.0%
ACATGAAAAAACCAAGGGAT+CGG	-	chr1.4:69217021-69217040	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	69215154	69217421	69215154	ID=MS.gene07312
chr1.4	mRNA	69215154	69217421	69215154	ID=MS.gene07312.t1;Parent=MS.gene07312
chr1.4	exon	69215154	69215243	69215154	ID=MS.gene07312.t1.exon1;Parent=MS.gene07312.t1
chr1.4	CDS	69215154	69215243	69215154	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69215359	69215463	69215359	ID=MS.gene07312.t1.exon2;Parent=MS.gene07312.t1
chr1.4	CDS	69215359	69215463	69215359	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69216344	69216443	69216344	ID=MS.gene07312.t1.exon3;Parent=MS.gene07312.t1
chr1.4	CDS	69216344	69216443	69216344	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69216559	69216650	69216559	ID=MS.gene07312.t1.exon4;Parent=MS.gene07312.t1
chr1.4	CDS	69216559	69216650	69216559	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69216745	69216825	69216745	ID=MS.gene07312.t1.exon5;Parent=MS.gene07312.t1
chr1.4	CDS	69216745	69216825	69216745	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69217125	69217193	69217125	ID=MS.gene07312.t1.exon6;Parent=MS.gene07312.t1
chr1.4	CDS	69217125	69217193	69217125	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1
chr1.4	exon	69217284	69217421	69217284	ID=MS.gene07312.t1.exon7;Parent=MS.gene07312.t1
chr1.4	CDS	69217284	69217421	69217284	ID=cds.MS.gene07312.t1;Parent=MS.gene07312.t1

Gene Sequence

>MS.gene07312

GTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGTAACCTAACAGCCCCTTCCAGTTAACTTATTTATAGCTTTTAGAAAGAAAGAAAAGAGGGATATATGAATATGATTAATGTGGTGGGTGGCTGAGTATGAAAATACTATAACAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTAATTTTCTCTTTCAGAATCTCGATAACTTGTAATAATAGTATTTCGCTTCAGAAGTGTTCCTTACAAACCAAAACCATGGTTTCAAAAGGTTTATATTCAACTGAGTTAATGCAATGCATGTTTGAATTGCATTATTTGAGCTTATAGAAAGACTTAAATTTTGTGTGACTGTTTAGGAGAAGTTATGAAGACAGATTATCAAACTGTTTATAAGGTGTTTTCAGCTTATTTTCATAAGTTCTCCAGATAGCTTATGAAAACAGCTTATATTTTATACGAAGACAATTTAATGTTATTTATCTTTTGCTATAGAAATAGCTTATGTACAAGCGCTTATCATAATAAGCACTTGTGAGCGGTGTATGTGTATCCAAACAGGGCCTTAGAAAGAGAAAGTAAAGCTTTTGGTTCAAGTTAATAAAAAAAAAAATCCTAAGATGATAAAAATGGAAACTTATTTTGTGTAGACTTTTATTTGAAAAACTGATGAGATAAGAATTTGATGTTTTTGGGGATGGATGGCAAAGATCTCCACCATTTTGGTTTTGAGAGTTTGGTATAGATCAGGTATGTTTGGGTTGGTGGCTAGAGTGGAATGGAATAAGCTAGTTATCTTTGCGAAAAAATGGACTTTACTTCATTCAATTCTATTCCGTTTTATTCCAATCCACTTCATTCAACTCTATACCACAATTCCAGACATACCGTAATACAATGTTACTTATTCTGGTCATACATGTATGTGTTTCAACTTTTCACATCACTGCAACATAAGTCATCACATTTGTGATATAGTAATTCACCTTATATGATTCTTCTAAACTTTGAATGGTCATTTGTCCAGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACGTAACAAGCTAGTGAGTTTTTTGAGATATCCTTAAACATTTATTTAAGTTTTGAAGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGTGTTTATGACTGAATAACAATATCATCTTGTATTATTGAAAGTGGTGTATGTACTATAAAATGTTGTAGGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAGTGTGTTGGTATCTGCATCAACACCTGTAAGTTTCCAACACAGGTTAGTGATTCTTCAAACTCTTATCATTTTCTCTTCATATCTGTGTCTTAAGCCGCCAGTTCTCATGGGAAGGGATATCTAGAGTTTGACCGAGGGTAACAAAATTATGGCCAGTGATTGTTTCAGTCAGGATTTGAACTCGGATTCAACCAAACGATTTGTCTTTAACTGAAATGCATTAAACATTTGAGTCCGATCCCTTGGTTTTTTCATGTTAGTATAAGAGTTAAATATATTCTGCCAGCTTTGAAGTTGTTGCATTTTATGGATGGTTCGATCTGACTCTATTTTAAATTTAGACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGGTAATAAATATTACGTATTCTCTTATGGAGTTCAAATTTATATGATGAGGTCGCTAATGTCACTATTTTCTTGACCTTTTAAATTTGCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>MS.gene07312.t1

VGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSVDLSDGTSWNSGVHVERCKYLEESKCVGICINTCKFPTQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT