Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80172.t1 | XP_003603276.1 | 95.3 | 552 | 26 | 0 | 1 | 552 | 1 | 552 | 0.00E+00 | 1103.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80172.t1 | O49931 | 89.1 | 552 | 57 | 2 | 1 | 552 | 5 | 553 | 3.3e-300 | 1031.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80172.t1 | G7J9S7 | 95.3 | 552 | 26 | 0 | 1 | 552 | 1 | 552 | 0.0e+00 | 1103.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene80172 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene04932 | MS.gene80172 | -0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene80172 | 0.847326 | 1.24E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene80172 | 0.828566 | 8.37E-55 | -1.69E-46 |
| MS.gene049396 | MS.gene80172 | 0.822489 | 2.30E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene80172 | 0.839301 | 1.72E-57 | -1.69E-46 |
| MS.gene049757 | MS.gene80172 | 0.856671 | 2.75E-62 | -1.69E-46 |
| MS.gene049805 | MS.gene80172 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene80172 | 0.809838 | 1.55E-50 | -1.69E-46 |
| MS.gene050122 | MS.gene80172 | 0.808976 | 2.38E-50 | -1.69E-46 |
| MS.gene050133 | MS.gene80172 | -0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene050315 | MS.gene80172 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene050400 | MS.gene80172 | 0.838716 | 2.44E-57 | -1.69E-46 |
| MS.gene050426 | MS.gene80172 | -0.854991 | 8.51E-62 | -1.69E-46 |
| MS.gene050553 | MS.gene80172 | 0.833016 | 6.79E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene80172 | 0.841207 | 5.46E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene80172 | 0.898946 | 3.22E-77 | -1.69E-46 |
| MS.gene050747 | MS.gene80172 | 0.830174 | 3.41E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene80172 | 0.81448 | 1.51E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene80172 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene05081 | MS.gene80172 | 0.841889 | 3.61E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene80172 | 0.833666 | 4.68E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene80172 | 0.842204 | 2.98E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene80172 | 0.880086 | 7.33E-70 | -1.69E-46 |
| MS.gene051360 | MS.gene80172 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene80172 | 0.830361 | 3.07E-55 | -1.69E-46 |
| MS.gene051438 | MS.gene80172 | 0.809605 | 1.74E-50 | -1.69E-46 |
| MS.gene051521 | MS.gene80172 | 0.84737 | 1.21E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene80172 | 0.887518 | 1.33E-72 | -1.69E-46 |
| MS.gene051552 | MS.gene80172 | -0.807979 | 3.88E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene80172 | 0.806312 | 8.75E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene80172 | 0.803437 | 3.49E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene80172 | 0.862641 | 4.39E-64 | -1.69E-46 |
| MS.gene051874 | MS.gene80172 | 0.814539 | 1.46E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene80172 | 0.853186 | 2.82E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene80172 | -0.853791 | 1.89E-61 | -1.69E-46 |
| MS.gene052128 | MS.gene80172 | -0.800673 | 1.29E-48 | -1.69E-46 |
| MS.gene052134 | MS.gene80172 | 0.838935 | 2.14E-57 | -1.69E-46 |
| MS.gene052135 | MS.gene80172 | 0.835685 | 1.45E-56 | -1.69E-46 |
| MS.gene052136 | MS.gene80172 | 0.845739 | 3.37E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene80172 | 0.842316 | 2.79E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene80172 | 0.833226 | 6.02E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene80172 | 0.818086 | 2.35E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene80172 | 0.907493 | 4.78E-81 | -1.69E-46 |
| MS.gene05240 | MS.gene80172 | -0.816169 | 6.35E-52 | -1.69E-46 |
| MS.gene052414 | MS.gene80172 | 0.886123 | 4.50E-72 | -1.69E-46 |
| MS.gene052421 | MS.gene80172 | 0.833099 | 6.48E-56 | -1.69E-46 |
| MS.gene052469 | MS.gene80172 | 0.870165 | 1.79E-66 | -1.69E-46 |
| MS.gene052481 | MS.gene80172 | 0.802215 | 6.24E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene80172 | 0.814171 | 1.76E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene80172 | 0.837001 | 6.72E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene80172 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene80172 | 0.836519 | 8.92E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene80172 | 0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene80172 | 0.804408 | 2.19E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene80172 | 0.858503 | 7.88E-63 | -1.69E-46 |
| MS.gene052999 | MS.gene80172 | 0.827665 | 1.38E-54 | -1.69E-46 |
| MS.gene053169 | MS.gene80172 | 0.878991 | 1.79E-69 | -1.69E-46 |
| MS.gene053207 | MS.gene80172 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene053318 | MS.gene80172 | 0.815338 | 9.73E-52 | -1.69E-46 |
| MS.gene05335 | MS.gene80172 | 0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene80172 | 0.835251 | 1.87E-56 | -1.69E-46 |
| MS.gene053479 | MS.gene80172 | 0.824203 | 9.16E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene80172 | 0.825042 | 5.81E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene80172 | 0.820114 | 8.14E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene80172 | 0.842022 | 3.33E-58 | -1.69E-46 |
| MS.gene053889 | MS.gene80172 | 0.803637 | 3.17E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene80172 | 0.831044 | 2.09E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene80172 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene80172 | 0.850836 | 1.31E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene80172 | 0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene80172 | 0.821829 | 3.28E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene80172 | 0.874814 | 5.03E-68 | -1.69E-46 |
| MS.gene054719 | MS.gene80172 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene80172 | -0.834938 | 2.24E-56 | -1.69E-46 |
| MS.gene054927 | MS.gene80172 | 0.806733 | 7.13E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene80172 | 0.862667 | 4.31E-64 | -1.69E-46 |
| MS.gene05505 | MS.gene80172 | 0.827413 | 1.59E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene80172 | 0.851845 | 6.81E-61 | -1.69E-46 |
| MS.gene055159 | MS.gene80172 | -0.805181 | 1.51E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene80172 | 0.850992 | 1.19E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene80172 | 0.809877 | 1.52E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene80172 | 0.86383 | 1.88E-64 | -1.69E-46 |
| MS.gene055539 | MS.gene80172 | 0.902907 | 5.99E-79 | -1.69E-46 |
| MS.gene05553 | MS.gene80172 | 0.834656 | 2.64E-56 | -1.69E-46 |
| MS.gene05556 | MS.gene80172 | 0.842035 | 3.31E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene80172 | 0.963787 | 1.63E-122 | -1.69E-46 |
| MS.gene055744 | MS.gene80172 | 0.964502 | 2.08E-123 | -1.69E-46 |
| MS.gene055909 | MS.gene80172 | 0.86611 | 3.62E-65 | -1.69E-46 |
| MS.gene055911 | MS.gene80172 | 0.868617 | 5.72E-66 | -1.69E-46 |
| MS.gene056166 | MS.gene80172 | 0.825922 | 3.60E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene80172 | 0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene80172 | 0.813573 | 2.39E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene80172 | 0.847189 | 1.35E-59 | -1.69E-46 |
| MS.gene056514 | MS.gene80172 | 0.855151 | 7.64E-62 | -1.69E-46 |
| MS.gene05664 | MS.gene80172 | 0.812907 | 3.35E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene80172 | 0.840223 | 9.90E-58 | -1.69E-46 |
| MS.gene05666 | MS.gene80172 | 0.828095 | 1.09E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene80172 | 0.810902 | 9.15E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene80172 | 0.862643 | 4.38E-64 | -1.69E-46 |
| MS.gene057019 | MS.gene80172 | 0.882674 | 8.54E-71 | -1.69E-46 |
| MS.gene057076 | MS.gene80172 | 0.84996 | 2.31E-60 | -1.69E-46 |
| MS.gene057124 | MS.gene80172 | 0.881325 | 2.64E-70 | -1.69E-46 |
| MS.gene057289 | MS.gene80172 | 0.817944 | 2.54E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene80172 | 0.805144 | 1.54E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene80172 | 0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene80172 | 0.859261 | 4.67E-63 | -1.69E-46 |
| MS.gene057476 | MS.gene80172 | 0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene80172 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene80172 | 0.855211 | 7.35E-62 | -1.69E-46 |
| MS.gene057749 | MS.gene80172 | 0.823072 | 1.69E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene80172 | 0.832703 | 8.12E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene80172 | 0.817608 | 3.02E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene80172 | 0.86411 | 1.54E-64 | -1.69E-46 |
| MS.gene058090 | MS.gene80172 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene058120 | MS.gene80172 | 0.863383 | 2.59E-64 | -1.69E-46 |
| MS.gene058130 | MS.gene80172 | 0.83105 | 2.08E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene80172 | 0.855217 | 7.32E-62 | -1.69E-46 |
| MS.gene05837 | MS.gene80172 | 0.830404 | 2.99E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene80172 | 0.872637 | 2.73E-67 | -1.69E-46 |
| MS.gene058448 | MS.gene80172 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene80172 | 0.899844 | 1.32E-77 | -1.69E-46 |
| MS.gene058838 | MS.gene80172 | 0.832318 | 1.01E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene80172 | 0.87954 | 1.15E-69 | -1.69E-46 |
| MS.gene059011 | MS.gene80172 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene80172 | 0.813595 | 2.36E-51 | -1.69E-46 |
| MS.gene059082 | MS.gene80172 | 0.81189 | 5.58E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene80172 | 0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene059402 | MS.gene80172 | -0.803003 | 4.29E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene80172 | 0.866448 | 2.83E-65 | -1.69E-46 |
| MS.gene059455 | MS.gene80172 | 0.802505 | 5.44E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene80172 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene80172 | 0.831304 | 1.80E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene80172 | 0.828828 | 7.24E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene80172 | 0.808698 | 2.72E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene80172 | 0.817314 | 3.52E-52 | -1.69E-46 |
| MS.gene059717 | MS.gene80172 | 0.81862 | 1.78E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene80172 | 0.832412 | 9.60E-56 | -1.69E-46 |
| MS.gene059946 | MS.gene80172 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene80172 | -0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene060372 | MS.gene80172 | 0.900315 | 8.28E-78 | -1.69E-46 |
| MS.gene060403 | MS.gene80172 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene80172 | 0.867971 | 9.23E-66 | -1.69E-46 |
| MS.gene060837 | MS.gene80172 | 0.858247 | 9.39E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene80172 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene80172 | 0.816162 | 6.38E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene80172 | 0.921571 | 3.01E-88 | -1.69E-46 |
| MS.gene061231 | MS.gene80172 | 0.817408 | 3.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80172.t1 | MTR_3g105820 | 95.833 | 552 | 23 | 0 | 1 | 552 | 1 | 552 | 0.0 | 1083 |
| MS.gene80172.t1 | MTR_4g057200 | 29.360 | 453 | 258 | 16 | 96 | 519 | 90 | 509 | 1.61e-54 | 193 |
| MS.gene80172.t1 | MTR_8g085790 | 27.345 | 501 | 283 | 14 | 84 | 551 | 43 | 495 | 9.74e-48 | 174 |
| MS.gene80172.t1 | MTR_8g085820 | 26.611 | 481 | 279 | 11 | 84 | 533 | 43 | 480 | 5.33e-46 | 169 |
| MS.gene80172.t1 | MTR_8g085840 | 26.400 | 500 | 290 | 13 | 84 | 551 | 67 | 520 | 1.20e-45 | 168 |
| MS.gene80172.t1 | MTR_8g085790 | 31.661 | 319 | 189 | 8 | 84 | 380 | 67 | 378 | 2.06e-42 | 157 |
| MS.gene80172.t1 | MTR_1g030480 | 26.176 | 340 | 205 | 14 | 99 | 421 | 210 | 520 | 2.11e-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80172.t1 | AT2G24820 | 77.597 | 491 | 104 | 4 | 64 | 552 | 53 | 539 | 0.0 | 794 |
| MS.gene80172.t1 | AT3G44880 | 28.423 | 577 | 306 | 23 | 6 | 546 | 22 | 527 | 3.07e-50 | 181 |
| MS.gene80172.t1 | AT4G25650 | 27.556 | 450 | 254 | 15 | 96 | 510 | 79 | 491 | 2.30e-43 | 162 |
| MS.gene80172.t1 | AT4G25650 | 26.205 | 477 | 249 | 16 | 96 | 510 | 79 | 514 | 8.55e-40 | 152 |
| MS.gene80172.t1 | AT1G44446 | 25.959 | 339 | 207 | 14 | 99 | 421 | 116 | 426 | 4.62e-23 | 102 |
| MS.gene80172.t1 | AT1G44446 | 25.959 | 339 | 207 | 14 | 99 | 421 | 218 | 528 | 1.57e-22 | 101 |
| MS.gene80172.t1 | AT1G44446 | 27.076 | 277 | 164 | 12 | 99 | 361 | 218 | 470 | 2.98e-20 | 94.7 |
| MS.gene80172.t1 | AT1G44446 | 29.944 | 177 | 109 | 6 | 99 | 270 | 218 | 384 | 4.93e-17 | 84.0 |
Find 146 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATCTATTTGCTAAATT+TGG | 0.091375 | 3.4:-92397818 | None:intergenic |
| CTTTCAAAAGAATTTCATTT+TGG | 0.099582 | 3.4:-92397565 | None:intergenic |
| TGAATACAACAAACTTTATT+AGG | 0.168312 | 3.4:+92398038 | MS.gene80172:CDS |
| GCATTGGCAATTCTTGTATC+TGG | 0.209307 | 3.4:+92397935 | MS.gene80172:CDS |
| GGGATTCTCAAGGTGTTATT+TGG | 0.225677 | 3.4:+92397015 | MS.gene80172:CDS |
| CACGGGATGCCATATCATTT+TGG | 0.253652 | 3.4:+92397677 | MS.gene80172:CDS |
| TCAGTGGTCTGTTCCTTTGT+AGG | 0.259166 | 3.4:+92397402 | MS.gene80172:CDS |
| ATTTAGCAAATAGATATTTC+AGG | 0.298772 | 3.4:+92397822 | MS.gene80172:CDS |
| CTTGTGTTCTACAAAATAAC+AGG | 0.302734 | 3.4:+92397345 | MS.gene80172:CDS |
| TATTCTACTGGAAAACTTGA+TGG | 0.338578 | 3.4:+92397154 | MS.gene80172:CDS |
| TCAGGAAACAGTTTCACTAT+TGG | 0.342040 | 3.4:-92397482 | None:intergenic |
| ATGCAAAGCAAAATGAGTTT+TGG | 0.346312 | 3.4:-92395600 | None:intergenic |
| GCACCTGCTGGACTTGTTGC+AGG | 0.354157 | 3.4:+92397746 | MS.gene80172:CDS |
| CCATTCCTCTTTCCAATCAT+AGG | 0.358558 | 3.4:-92395852 | None:intergenic |
| GGATTCTCAAGGTGTTATTT+GGG | 0.369826 | 3.4:+92397016 | MS.gene80172:CDS |
| TCAATTACAGCAGGCTCTTT+AGG | 0.378521 | 3.4:-92397719 | None:intergenic |
| CTGTTCCTTTGTAGGCCAAC+TGG | 0.383836 | 3.4:+92397410 | MS.gene80172:CDS |
| AGTCCAAAGGAGTATTTGTT+TGG | 0.385986 | 3.4:-92395639 | None:intergenic |
| TTCTGATGGAAGTACCATTC+AGG | 0.391509 | 3.4:-92397500 | None:intergenic |
| GCCTAACTTCTTACGGTTTG+AGG | 0.395482 | 3.4:+92397319 | MS.gene80172:CDS |
| GTTGAGATTGAAACTGAAAC+TGG | 0.401389 | 3.4:-92395672 | None:intergenic |
| CGAACTGATAGAGGGTTTGC+AGG | 0.406206 | 3.4:+92397266 | MS.gene80172:CDS |
| AGTAGAATAGAATGATCATA+TGG | 0.408492 | 3.4:-92397140 | None:intergenic |
| ATATGATCATTCTATTCTAC+TGG | 0.410613 | 3.4:+92397142 | MS.gene80172:CDS |
| TCTGAAGGCCAGTTGATTGA+TGG | 0.416371 | 3.4:+92396769 | MS.gene80172:CDS |
| CTCAAGGTGTTATTTGGGTA+TGG | 0.419926 | 3.4:+92397021 | MS.gene80172:CDS |
| TCCATGCTGATAGTGAGGTT+TGG | 0.420466 | 3.4:+92397443 | MS.gene80172:CDS |
| ACCCCTGCGTTCTTGCTCAC+TGG | 0.427222 | 3.4:-92395813 | None:intergenic |
| GGCTGTTGCGTTAGCTGCAT+TGG | 0.431876 | 3.4:+92397919 | MS.gene80172:CDS |
| CCAAGTTTGAAAAGCTTTGA+CGG | 0.431998 | 3.4:-92397876 | None:intergenic |
| GTGCTGTGACCAAAATGATA+TGG | 0.432114 | 3.4:-92397686 | None:intergenic |
| GAGAACTTGCAGCCTATGAT+TGG | 0.435775 | 3.4:+92395840 | MS.gene80172:CDS |
| CATCCAAACAAATACTCCTT+TGG | 0.438298 | 3.4:+92395636 | MS.gene80172:CDS |
| TAGAGGGTTTGCAGGTTGGT+GGG | 0.438638 | 3.4:+92397274 | MS.gene80172:CDS |
| GCTGCATCAACTGTACTTGA+TGG | 0.444392 | 3.4:+92395758 | MS.gene80172:CDS |
| CAAGCCTTCCATCAATCAAC+TGG | 0.448979 | 3.4:-92396777 | None:intergenic |
| CGAATTGCCATCCATGATAC+AGG | 0.448989 | 3.4:-92396804 | None:intergenic |
| TCTGTTCTATCATGCGAGAT+TGG | 0.453393 | 3.4:-92397191 | None:intergenic |
| TTCAGGTATAGTTCCTTTGT+CGG | 0.454673 | 3.4:-92397596 | None:intergenic |
| TGTCTGATGATCTTAAATTC+AGG | 0.456895 | 3.4:-92397613 | None:intergenic |
| CAAAGGAGTATTTGTTTGGA+TGG | 0.457186 | 3.4:-92395635 | None:intergenic |
| CTGATAGAGGGTTTGCAGGT+TGG | 0.459478 | 3.4:+92397270 | MS.gene80172:CDS |
| CGCAACAGCCACAGCCGAAA+GGG | 0.460635 | 3.4:-92397906 | None:intergenic |
| GTACTAAGCCTAACTTCTTA+CGG | 0.464513 | 3.4:+92397312 | MS.gene80172:CDS |
| ATGGATTTCCCTTGTCCAGT+TGG | 0.465078 | 3.4:-92397425 | None:intergenic |
| TCTGCATCCCTATGCTCTGT+TGG | 0.465909 | 3.4:+92397986 | MS.gene80172:CDS |
| AAACCTTGCTTGCATTCTGA+TGG | 0.468051 | 3.4:-92397514 | None:intergenic |
| TTGAAACTGAAACTGGAAGA+TGG | 0.472271 | 3.4:-92395665 | None:intergenic |
| ATAGAGGGTTTGCAGGTTGG+TGG | 0.475534 | 3.4:+92397273 | MS.gene80172:CDS |
| GCCTCAAACCGTAAGAAGTT+AGG | 0.477957 | 3.4:-92397320 | None:intergenic |
| TTTGAGAACTTTGCAAGGCC+AGG | 0.480628 | 3.4:+92397086 | MS.gene80172:CDS |
| TCAGCTTCCTCACCTGCAAA+GGG | 0.482663 | 3.4:+92397773 | MS.gene80172:CDS |
| GTAATTGAACATGCACCTGC+TGG | 0.483939 | 3.4:+92397734 | MS.gene80172:CDS |
| CTTTGTAGGCCAACTGGACA+AGG | 0.485841 | 3.4:+92397416 | MS.gene80172:CDS |
| ACACATGGGTTGCTGAATAC+AGG | 0.486315 | 3.4:+92397633 | MS.gene80172:CDS |
| CATTGGCAATTCTTGTATCT+GGG | 0.491960 | 3.4:+92397936 | MS.gene80172:CDS |
| ATAGGGATGCAGATGCCAAC+AGG | 0.493759 | 3.4:-92397976 | None:intergenic |
| GTGACAGAACGAACTGATAG+AGG | 0.493826 | 3.4:+92397257 | MS.gene80172:CDS |
| TAGTGAAACTGTTTCCTGAA+TGG | 0.500632 | 3.4:+92397486 | MS.gene80172:CDS |
| CTGCATCAACTGTACTTGAT+GGG | 0.506544 | 3.4:+92395759 | MS.gene80172:CDS |
| AGAGGGTTTGCAGGTTGGTG+GGG | 0.507806 | 3.4:+92397275 | MS.gene80172:CDS |
| ATCAGCTTCCTCACCTGCAA+AGG | 0.509289 | 3.4:+92397772 | MS.gene80172:CDS |
| ACGCAACAGCCACAGCCGAA+AGG | 0.521750 | 3.4:-92397907 | None:intergenic |
| TGCGAGATTGGAATATGAGC+AGG | 0.522604 | 3.4:-92397179 | None:intergenic |
| CATTCTTAGTGAGGTACAAA+GGG | 0.524490 | 3.4:-92395877 | None:intergenic |
| TTCAGTTTCAATCTCAACAA+AGG | 0.530425 | 3.4:+92395677 | MS.gene80172:CDS |
| ATGAAGATCGGTGTCCTCAC+AGG | 0.533880 | 3.4:+92395984 | MS.gene80172:CDS |
| GAAAGAGAAGGTTCCGACAA+AGG | 0.535987 | 3.4:+92397583 | MS.gene80172:CDS |
| TTGATTTCACTCCATGGCGT+TGG | 0.537003 | 3.4:+92395556 | None:intergenic |
| AGCTTCCTCACCTGCAAAGG+GGG | 0.537835 | 3.4:+92397775 | MS.gene80172:CDS |
| AGGCTTGAATGCCTGTATCA+TGG | 0.538330 | 3.4:+92396793 | MS.gene80172:CDS |
| TGAAACTGAAACTGGAAGAT+GGG | 0.541256 | 3.4:-92395664 | None:intergenic |
| ATGCTGATAGTGAGGTTTGG+AGG | 0.541567 | 3.4:+92397446 | MS.gene80172:CDS |
| TTGAGAACTTTGCAAGGCCA+GGG | 0.544089 | 3.4:+92397087 | MS.gene80172:CDS |
| CTGCGTTCTTGCTCACTGGA+AGG | 0.546061 | 3.4:-92395809 | None:intergenic |
| CTTGTCCAGTTGGCCTACAA+AGG | 0.550809 | 3.4:-92397415 | None:intergenic |
| AGGAGTATTTGTTTGGATGG+TGG | 0.552067 | 3.4:-92395632 | None:intergenic |
| GTACCACACGATGCACCACT+TGG | 0.552643 | 3.4:+92395899 | MS.gene80172:CDS |
| CAAATGTCAGTAAAATACCT+TGG | 0.554742 | 3.4:+92397063 | MS.gene80172:CDS |
| ATACACTCCAACAGAGCATA+GGG | 0.555383 | 3.4:-92397993 | None:intergenic |
| ACATTCTTAGTGAGGTACAA+AGG | 0.557836 | 3.4:-92395878 | None:intergenic |
| TTCTTGTATCTGGGAGACAA+TGG | 0.561754 | 3.4:+92397945 | MS.gene80172:CDS |
| GTTTGTTGTATTCAATGCAA+TGG | 0.564073 | 3.4:-92398029 | None:intergenic |
| TGCCATCTTTAAACAAAACA+AGG | 0.564133 | 3.4:-92395943 | None:intergenic |
| AGTCCTGCAACAAGTCCAGC+AGG | 0.564418 | 3.4:-92397749 | None:intergenic |
| CAAACTTTATTAGGACACAT+AGG | 0.568168 | 3.4:+92398047 | MS.gene80172:CDS |
| TCTCGCATGATAGAACAGAT+TGG | 0.569347 | 3.4:+92397195 | MS.gene80172:CDS |
| TACAGCAGGCTCTTTAGGCA+AGG | 0.570711 | 3.4:-92397714 | None:intergenic |
| GGATGGCAATTCGAAGGCGA+AGG | 0.570725 | 3.4:+92396814 | MS.gene80172:CDS |
| AGATTCAATGCTATGAAGAT+CGG | 0.573811 | 3.4:+92395972 | MS.gene80172:CDS |
| CATACACTCCAACAGAGCAT+AGG | 0.573882 | 3.4:-92397994 | None:intergenic |
| TCAAGCAGAAGAAAGCATGC+AGG | 0.578242 | 3.4:+92395707 | MS.gene80172:CDS |
| CTTCCATCAGAATGCAAGCA+AGG | 0.579730 | 3.4:+92397511 | MS.gene80172:CDS |
| GTTGAAACATCTTGAAACCC+TGG | 0.581335 | 3.4:-92397104 | None:intergenic |
| CTTGCAAAGTTCTCAAACCA+AGG | 0.582584 | 3.4:-92397080 | None:intergenic |
| GGTGCATGTTCAATTACAGC+AGG | 0.585100 | 3.4:-92397728 | None:intergenic |
| AGAAGATCAGAAAGTTCTAG+TGG | 0.585811 | 3.4:+92395784 | MS.gene80172:CDS |
| GGGTTGCTGAATACAGGAAG+TGG | 0.586558 | 3.4:+92397639 | MS.gene80172:CDS |
| TCCAAACCTCACTATCAGCA+TGG | 0.589532 | 3.4:-92397444 | None:intergenic |
| TTCCAGTGAGCAAGAACGCA+GGG | 0.590208 | 3.4:+92395811 | MS.gene80172:CDS |
| TGGAAGATGGGTTAGTCCAA+AGG | 0.593475 | 3.4:-92395652 | None:intergenic |
| TGGATGGACAAAGTGGGACA+CGG | 0.594552 | 3.4:+92397659 | MS.gene80172:CDS |
| CCTATGATTGGAAAGAGGAA+TGG | 0.595339 | 3.4:+92395852 | MS.gene80172:CDS |
| TGTTAAAACATATGAAGTGA+GGG | 0.595344 | 3.4:+92396995 | MS.gene80172:CDS |
| GTAGAATAGAATGATCATAT+GGG | 0.601415 | 3.4:-92397139 | None:intergenic |
| TGCAGCCTATGATTGGAAAG+AGG | 0.602118 | 3.4:+92395847 | MS.gene80172:CDS |
| TATCATGGATGGCAATTCGA+AGG | 0.603135 | 3.4:+92396808 | MS.gene80172:CDS |
| AAGGCCAGTTGATTGATGGA+AGG | 0.603495 | 3.4:+92396773 | MS.gene80172:CDS |
| AGTATTTGTTTGGATGGTGG+AGG | 0.603781 | 3.4:-92395629 | None:intergenic |
| CTTGGTTTGAGAACTTTGCA+AGG | 0.608245 | 3.4:+92397081 | MS.gene80172:CDS |
| ATTTAAGATCATCAGACACA+TGG | 0.611628 | 3.4:+92397618 | MS.gene80172:CDS |
| TGCTGAATACAGGAAGTGGA+TGG | 0.613748 | 3.4:+92397643 | MS.gene80172:CDS |
| AAATGGATTTACCAACGCCA+TGG | 0.614476 | 3.4:-92395567 | None:intergenic |
| CTTCCAGTGAGCAAGAACGC+AGG | 0.616535 | 3.4:+92395810 | MS.gene80172:CDS |
| TGCATCAACTGTACTTGATG+GGG | 0.616664 | 3.4:+92395760 | MS.gene80172:CDS |
| TGCAGGGTATGTCACCGCCA+CGG | 0.619960 | 3.4:+92395724 | MS.gene80172:CDS |
| GGATGGACAAAGTGGGACAC+GGG | 0.620612 | 3.4:+92397660 | MS.gene80172:CDS |
| GGTGAAATAAACTACTTCAG+TGG | 0.621651 | 3.4:+92397386 | MS.gene80172:CDS |
| CAAGCAGAAGAAAGCATGCA+GGG | 0.625644 | 3.4:+92395708 | MS.gene80172:CDS |
| GTGTTAAAACATATGAAGTG+AGG | 0.626515 | 3.4:+92396994 | MS.gene80172:CDS |
| GATGGCAATTCGAAGGCGAA+GGG | 0.627130 | 3.4:+92396815 | MS.gene80172:CDS |
| AGGTTAGCAAAACTATCTGA+AGG | 0.627154 | 3.4:+92396754 | MS.gene80172:intron |
| ACAATGGAAAGTCCTCCTGT+TGG | 0.632385 | 3.4:+92397961 | MS.gene80172:CDS |
| CAGGAAGTGGATGGACAAAG+TGG | 0.633627 | 3.4:+92397652 | MS.gene80172:CDS |
| TTTAAGATCATCAGACACAT+GGG | 0.641224 | 3.4:+92397619 | MS.gene80172:CDS |
| GCTTCCTCACCTGCAAAGGG+GGG | 0.641330 | 3.4:+92397776 | MS.gene80172:CDS |
| GAAATGTGTGAAGATACCTC+AGG | 0.642067 | 3.4:+92396837 | MS.gene80172:CDS |
| TGACAGAACGAACTGATAGA+GGG | 0.642389 | 3.4:+92397258 | MS.gene80172:CDS |
| TGCAGCTTTGACATCTGCCG+TGG | 0.643956 | 3.4:-92395741 | None:intergenic |
| TTGAATGCCTGTATCATGGA+TGG | 0.646528 | 3.4:+92396797 | MS.gene80172:CDS |
| AGCTTTGACATCTGCCGTGG+CGG | 0.646677 | 3.4:-92395738 | None:intergenic |
| GGAAATCCATGCTGATAGTG+AGG | 0.648025 | 3.4:+92397438 | MS.gene80172:CDS |
| GAAGATCAGAAAGTTCTAGT+GGG | 0.652494 | 3.4:+92395785 | MS.gene80172:CDS |
| TTTGTAGGCCAACTGGACAA+GGG | 0.655506 | 3.4:+92397417 | MS.gene80172:CDS |
| CGTGTGGTACATTCTTAGTG+AGG | 0.668970 | 3.4:-92395886 | None:intergenic |
| TCAAACACTGTGAGACCAAG+TGG | 0.669069 | 3.4:-92395914 | None:intergenic |
| AGGAAGTGGATGGACAAAGT+GGG | 0.674817 | 3.4:+92397653 | MS.gene80172:CDS |
| CAGCTTCCTCACCTGCAAAG+GGG | 0.676647 | 3.4:+92397774 | MS.gene80172:CDS |
| TATGAAGTGAGGGATTCTCA+AGG | 0.679527 | 3.4:+92397005 | MS.gene80172:CDS |
| TTGTGTTCTACAAAATAACA+GGG | 0.682628 | 3.4:+92397346 | MS.gene80172:CDS |
| TAAATTAAAACCAACCTGTG+AGG | 0.684077 | 3.4:-92395998 | None:intergenic |
| AGACCAAGTGGTGCATCGTG+TGG | 0.684416 | 3.4:-92395902 | None:intergenic |
| TGGTGGGGACGAGAGAAAGA+CGG | 0.685767 | 3.4:+92397290 | MS.gene80172:CDS |
| GGGATGCAGATGCCAACAGG+AGG | 0.688384 | 3.4:-92397973 | None:intergenic |
| TCCAGTGAGCAAGAACGCAG+GGG | 0.708243 | 3.4:+92395812 | MS.gene80172:CDS |
| AGTTTGAAAAGCTTTGACGG+CGG | 0.714074 | 3.4:-92397873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGTAAGTAATTGAAAT+TGG | - | chr3.4:92396554-92396573 | None:intergenic | 15.0% |
| !!! | AAATATCTATTTGCTAAATT+TGG | - | chr3.4:92397821-92397840 | None:intergenic | 15.0% |
| !!! | TTTCAAAAGAATTTCATTTT+GGG | - | chr3.4:92397567-92397586 | None:intergenic | 15.0% |
| !! | AATTATGAACTCTTACTTAT+GGG | - | chr3.4:92396083-92396102 | None:intergenic | 20.0% |
| !! | ACATACTATCATTATTCATT+AGG | - | chr3.4:92396530-92396549 | None:intergenic | 20.0% |
| !! | AGATCTATATTACTCTATTT+AGG | + | chr3.4:92396309-92396328 | MS.gene80172:intron | 20.0% |
| !! | ATTGGTATTAATAAAGTTAG+TGG | + | chr3.4:92396340-92396359 | MS.gene80172:intron | 20.0% |
| !! | ATTTAGCAAATAGATATTTC+AGG | + | chr3.4:92397822-92397841 | MS.gene80172:CDS | 20.0% |
| !! | TCTATTTAGGAATAAGATAT+TGG | + | chr3.4:92396322-92396341 | MS.gene80172:intron | 20.0% |
| !! | TGAATACAACAAACTTTATT+AGG | + | chr3.4:92398038-92398057 | MS.gene80172:CDS | 20.0% |
| !! | TTAATATTTGTATCTTTCCT+AGG | + | chr3.4:92396488-92396507 | MS.gene80172:intron | 20.0% |
| !!! | CTTTCAAAAGAATTTCATTT+TGG | - | chr3.4:92397568-92397587 | None:intergenic | 20.0% |
| ! | AAAAAATAAACCCGAACATT+AGG | - | chr3.4:92396225-92396244 | None:intergenic | 25.0% |
| ! | AGGGAAATTGTAGATAAAAA+TGG | + | chr3.4:92397365-92397384 | MS.gene80172:CDS | 25.0% |
| ! | AGTAGAATAGAATGATCATA+TGG | - | chr3.4:92397143-92397162 | None:intergenic | 25.0% |
| ! | ATAAATATTCTCACGTTAAC+TGG | + | chr3.4:92396615-92396634 | MS.gene80172:intron | 25.0% |
| ! | ATATCATGAATGTCCTTATA+TGG | + | chr3.4:92396891-92396910 | MS.gene80172:intron | 25.0% |
| ! | ATATGATCATTCTATTCTAC+TGG | + | chr3.4:92397142-92397161 | MS.gene80172:CDS | 25.0% |
| ! | ATCAAACCATCTAAATTGAT+TGG | + | chr3.4:92396657-92396676 | MS.gene80172:intron | 25.0% |
| ! | CAATTATGAACTCTTACTTA+TGG | - | chr3.4:92396084-92396103 | None:intergenic | 25.0% |
| ! | CCTGAATCATGTAAAATATA+AGG | - | chr3.4:92396737-92396756 | None:intergenic | 25.0% |
| ! | GTAGAATAGAATGATCATAT+GGG | - | chr3.4:92397142-92397161 | None:intergenic | 25.0% |
| ! | TATAAGGACATTCATGATAT+AGG | - | chr3.4:92396891-92396910 | None:intergenic | 25.0% |
| ! | TGTTAAAACATATGAAGTGA+GGG | + | chr3.4:92396995-92397014 | MS.gene80172:CDS | 25.0% |
| ! | TTGTGTTCTACAAAATAACA+GGG | + | chr3.4:92397346-92397365 | MS.gene80172:CDS | 25.0% |
| !! | CCTTATATTTTACATGATTC+AGG | + | chr3.4:92396734-92396753 | MS.gene80172:intron | 25.0% |
| !!! | AACCTTGTTTTGTTTAAAGA+TGG | + | chr3.4:92395941-92395960 | MS.gene80172:CDS | 25.0% |
| !!! | TGAAATTCTTTTGAAAGAGA+AGG | + | chr3.4:92397571-92397590 | MS.gene80172:CDS | 25.0% |
| AGATTCAATGCTATGAAGAT+CGG | + | chr3.4:92395972-92395991 | MS.gene80172:CDS | 30.0% | |
| ATGATGTGAAATCAAACTCA+AGG | + | chr3.4:92396251-92396270 | MS.gene80172:intron | 30.0% | |
| CAAACTTTATTAGGACACAT+AGG | + | chr3.4:92398047-92398066 | MS.gene80172:CDS | 30.0% | |
| CAAATGTCAGTAAAATACCT+TGG | + | chr3.4:92397063-92397082 | MS.gene80172:CDS | 30.0% | |
| CAGTAGCAGTATTGTAAATA+AGG | - | chr3.4:92396398-92396417 | None:intergenic | 30.0% | |
| CTTGTGTTCTACAAAATAAC+AGG | + | chr3.4:92397345-92397364 | MS.gene80172:CDS | 30.0% | |
| GCTGTATATGTGTATATACT+TGG | + | chr3.4:92396195-92396214 | MS.gene80172:intron | 30.0% | |
| GTGTTAAAACATATGAAGTG+AGG | + | chr3.4:92396994-92397013 | MS.gene80172:CDS | 30.0% | |
| TAAATTAAAACCAACCTGTG+AGG | - | chr3.4:92396001-92396020 | None:intergenic | 30.0% | |
| TACTTGCCAATCAATTTAGA+TGG | - | chr3.4:92396666-92396685 | None:intergenic | 30.0% | |
| TATTCTACTGGAAAACTTGA+TGG | + | chr3.4:92397154-92397173 | MS.gene80172:CDS | 30.0% | |
| TCATTATCAGACAAACACAT+TGG | - | chr3.4:92396290-92396309 | None:intergenic | 30.0% | |
| TGCCATCTTTAAACAAAACA+AGG | - | chr3.4:92395946-92395965 | None:intergenic | 30.0% | |
| TGTCTGATGATCTTAAATTC+AGG | - | chr3.4:92397616-92397635 | None:intergenic | 30.0% | |
| TGTTAGCATCAAACCATATA+AGG | - | chr3.4:92396907-92396926 | None:intergenic | 30.0% | |
| TTCAGTTTCAATCTCAACAA+AGG | + | chr3.4:92395677-92395696 | MS.gene80172:CDS | 30.0% | |
| ! | AAGGTTTTTGAACAAGACAT+GGG | + | chr3.4:92397530-92397549 | MS.gene80172:CDS | 30.0% |
| ! | ATGCAAAGCAAAATGAGTTT+TGG | - | chr3.4:92395603-92395622 | None:intergenic | 30.0% |
| ! | ATTTAAGATCATCAGACACA+TGG | + | chr3.4:92397618-92397637 | MS.gene80172:CDS | 30.0% |
| ! | TTGAGTTTGATTTCACATCA+TGG | - | chr3.4:92396252-92396271 | None:intergenic | 30.0% |
| ! | TTTAAGATCATCAGACACAT+GGG | + | chr3.4:92397619-92397638 | MS.gene80172:CDS | 30.0% |
| ! | TTTTATTCCTTTCACAATGC+TGG | + | chr3.4:92396705-92396724 | MS.gene80172:intron | 30.0% |
| !! | AAAGCAAAATGAGTTTTGGT+GGG | - | chr3.4:92395599-92395618 | None:intergenic | 30.0% |
| !! | CAAGGTATTTTACTGACATT+TGG | - | chr3.4:92397065-92397084 | None:intergenic | 30.0% |
| !! | GTTTGTTGTATTCAATGCAA+TGG | - | chr3.4:92398032-92398051 | None:intergenic | 30.0% |
| !!! | CACTTCATATGTTTTAACAC+AGG | - | chr3.4:92396994-92397013 | None:intergenic | 30.0% |
| !!! | CTGTTATTTTGTAGAACACA+AGG | - | chr3.4:92397347-92397366 | None:intergenic | 30.0% |
| AACTTGGAAAAATGCCCTTT+CGG | + | chr3.4:92397892-92397911 | MS.gene80172:CDS | 35.0% | |
| AATCACATAGCATGCAACTT+TGG | - | chr3.4:92396113-92396132 | None:intergenic | 35.0% | |
| ACATTCTTAGTGAGGTACAA+AGG | - | chr3.4:92395881-92395900 | None:intergenic | 35.0% | |
| AGGTTAGCAAAACTATCTGA+AGG | + | chr3.4:92396754-92396773 | MS.gene80172:intron | 35.0% | |
| CATCCAAACAAATACTCCTT+TGG | + | chr3.4:92395636-92395655 | MS.gene80172:CDS | 35.0% | |
| CATTCTTAGTGAGGTACAAA+GGG | - | chr3.4:92395880-92395899 | None:intergenic | 35.0% | |
| CATTGGCAATTCTTGTATCT+GGG | + | chr3.4:92397936-92397955 | MS.gene80172:CDS | 35.0% | |
| GGTGAAATAAACTACTTCAG+TGG | + | chr3.4:92397386-92397405 | MS.gene80172:CDS | 35.0% | |
| GTACTAAGCCTAACTTCTTA+CGG | + | chr3.4:92397312-92397331 | MS.gene80172:CDS | 35.0% | |
| GTTGAGATTGAAACTGAAAC+TGG | - | chr3.4:92395675-92395694 | None:intergenic | 35.0% | |
| TAGTGAAACTGTTTCCTGAA+TGG | + | chr3.4:92397486-92397505 | MS.gene80172:CDS | 35.0% | |
| TCAGGAAACAGTTTCACTAT+TGG | - | chr3.4:92397485-92397504 | None:intergenic | 35.0% | |
| TGAAACTGAAACTGGAAGAT+GGG | - | chr3.4:92395667-92395686 | None:intergenic | 35.0% | |
| TTCAGGTATAGTTCCTTTGT+CGG | - | chr3.4:92397599-92397618 | None:intergenic | 35.0% | |
| TTGAAACTGAAACTGGAAGA+TGG | - | chr3.4:92395668-92395687 | None:intergenic | 35.0% | |
| ! | AGAAGATCAGAAAGTTCTAG+TGG | + | chr3.4:92395784-92395803 | MS.gene80172:CDS | 35.0% |
| ! | CAAGGTTTTTGAACAAGACA+TGG | + | chr3.4:92397529-92397548 | MS.gene80172:CDS | 35.0% |
| ! | CCAAGTTTGAAAAGCTTTGA+CGG | - | chr3.4:92397879-92397898 | None:intergenic | 35.0% |
| ! | GAAGATCAGAAAGTTCTAGT+GGG | + | chr3.4:92395785-92395804 | MS.gene80172:CDS | 35.0% |
| ! | GGTATTTTACTGACATTTGG+AGG | - | chr3.4:92397062-92397081 | None:intergenic | 35.0% |
| !! | AAGCAAAATGAGTTTTGGTG+GGG | - | chr3.4:92395598-92395617 | None:intergenic | 35.0% |
| !! | AGTCCAAAGGAGTATTTGTT+TGG | - | chr3.4:92395642-92395661 | None:intergenic | 35.0% |
| !! | CAAAGCAAAATGAGTTTTGG+TGG | - | chr3.4:92395600-92395619 | None:intergenic | 35.0% |
| !! | CAAAGGAGTATTTGTTTGGA+TGG | - | chr3.4:92395638-92395657 | None:intergenic | 35.0% |
| !! | GGATTCTCAAGGTGTTATTT+GGG | + | chr3.4:92397016-92397035 | MS.gene80172:CDS | 35.0% |
| AAACCTTGCTTGCATTCTGA+TGG | - | chr3.4:92397517-92397536 | None:intergenic | 40.0% | |
| ATACACTCCAACAGAGCATA+GGG | - | chr3.4:92397996-92398015 | None:intergenic | 40.0% | |
| CATGAAAACTACTAGCACAG+GGG | - | chr3.4:92396578-92396597 | None:intergenic | 40.0% | |
| CCATGAAAACTACTAGCACA+GGG | - | chr3.4:92396579-92396598 | None:intergenic | 40.0% | |
| CCATTCCTCTTTCCAATCAT+AGG | - | chr3.4:92395855-92395874 | None:intergenic | 40.0% | |
| CCTATGATTGGAAAGAGGAA+TGG | + | chr3.4:92395852-92395871 | MS.gene80172:CDS | 40.0% | |
| CTGCATCAACTGTACTTGAT+GGG | + | chr3.4:92395759-92395778 | MS.gene80172:CDS | 40.0% | |
| CTTGCAAAGTTCTCAAACCA+AGG | - | chr3.4:92397083-92397102 | None:intergenic | 40.0% | |
| GAAATGTGTGAAGATACCTC+AGG | + | chr3.4:92396837-92396856 | MS.gene80172:CDS | 40.0% | |
| GTGCTGTGACCAAAATGATA+TGG | - | chr3.4:92397689-92397708 | None:intergenic | 40.0% | |
| GTTGAAACATCTTGAAACCC+TGG | - | chr3.4:92397107-92397126 | None:intergenic | 40.0% | |
| TATCATGGATGGCAATTCGA+AGG | + | chr3.4:92396808-92396827 | MS.gene80172:CDS | 40.0% | |
| TATGAAGTGAGGGATTCTCA+AGG | + | chr3.4:92397005-92397024 | MS.gene80172:CDS | 40.0% | |
| TCAATTACAGCAGGCTCTTT+AGG | - | chr3.4:92397722-92397741 | None:intergenic | 40.0% | |
| TCTCGCATGATAGAACAGAT+TGG | + | chr3.4:92397195-92397214 | MS.gene80172:CDS | 40.0% | |
| TCTGTCACCTCAAAAAGTAG+CGG | - | chr3.4:92397245-92397264 | None:intergenic | 40.0% | |
| TCTGTTCTATCATGCGAGAT+TGG | - | chr3.4:92397194-92397213 | None:intergenic | 40.0% | |
| TGACAGAACGAACTGATAGA+GGG | + | chr3.4:92397258-92397277 | MS.gene80172:CDS | 40.0% | |
| TGCATCAACTGTACTTGATG+GGG | + | chr3.4:92395760-92395779 | MS.gene80172:CDS | 40.0% | |
| TTCTTGTATCTGGGAGACAA+TGG | + | chr3.4:92397945-92397964 | MS.gene80172:CDS | 40.0% | |
| TTGAATGCCTGTATCATGGA+TGG | + | chr3.4:92396797-92396816 | MS.gene80172:CDS | 40.0% | |
| ! | AGTATTTGTTTGGATGGTGG+AGG | - | chr3.4:92395632-92395651 | None:intergenic | 40.0% |
| ! | AGTTTGAAAAGCTTTGACGG+CGG | - | chr3.4:92397876-92397895 | None:intergenic | 40.0% |
| ! | CCGTCAAAGCTTTTCAAACT+TGG | + | chr3.4:92397876-92397895 | MS.gene80172:CDS | 40.0% |
| ! | CCTGTGCTAGTAGTTTTCAT+GGG | + | chr3.4:92396577-92396596 | MS.gene80172:intron | 40.0% |
| ! | CTTGGTTTGAGAACTTTGCA+AGG | + | chr3.4:92397081-92397100 | MS.gene80172:CDS | 40.0% |
| ! | GCATTGGCAATTCTTGTATC+TGG | + | chr3.4:92397935-92397954 | MS.gene80172:CDS | 40.0% |
| !! | AGGAGTATTTGTTTGGATGG+TGG | - | chr3.4:92395635-92395654 | None:intergenic | 40.0% |
| !! | CTCAAGGTGTTATTTGGGTA+TGG | + | chr3.4:92397021-92397040 | MS.gene80172:CDS | 40.0% |
| !! | GGGATTCTCAAGGTGTTATT+TGG | + | chr3.4:92397015-92397034 | MS.gene80172:CDS | 40.0% |
| !! | TACTTGGTGCTCCTAATGTT+CGG | + | chr3.4:92396211-92396230 | MS.gene80172:intron | 40.0% |
| !! | TTCTGATGGAAGTACCATTC+AGG | - | chr3.4:92397503-92397522 | None:intergenic | 40.0% |
| AAGGCCAGTTGATTGATGGA+AGG | + | chr3.4:92396773-92396792 | MS.gene80172:CDS | 45.0% | |
| ACAATACTGCTACTGCTGAC+AGG | + | chr3.4:92396403-92396422 | MS.gene80172:intron | 45.0% | |
| ACAATGGAAAGTCCTCCTGT+TGG | + | chr3.4:92397961-92397980 | MS.gene80172:CDS | 45.0% | |
| AGGAAGTGGATGGACAAAGT+GGG | + | chr3.4:92397653-92397672 | MS.gene80172:CDS | 45.0% | |
| AGGCTTGAATGCCTGTATCA+TGG | + | chr3.4:92396793-92396812 | MS.gene80172:CDS | 45.0% | |
| ATGGATTTCCCTTGTCCAGT+TGG | - | chr3.4:92397428-92397447 | None:intergenic | 45.0% | |
| CAAGCCTTCCATCAATCAAC+TGG | - | chr3.4:92396780-92396799 | None:intergenic | 45.0% | |
| CAGCTGATGCAAAAATTCCC+AGG | + | chr3.4:92396964-92396983 | MS.gene80172:CDS | 45.0% | |
| CATACACTCCAACAGAGCAT+AGG | - | chr3.4:92397997-92398016 | None:intergenic | 45.0% | |
| CCCATGAAAACTACTAGCAC+AGG | - | chr3.4:92396580-92396599 | None:intergenic | 45.0% | |
| CGAATTGCCATCCATGATAC+AGG | - | chr3.4:92396807-92396826 | None:intergenic | 45.0% | |
| CGTGTGGTACATTCTTAGTG+AGG | - | chr3.4:92395889-92395908 | None:intergenic | 45.0% | |
| CTTCCATCAGAATGCAAGCA+AGG | + | chr3.4:92397511-92397530 | MS.gene80172:CDS | 45.0% | |
| GAAAGAGAAGGTTCCGACAA+AGG | + | chr3.4:92397583-92397602 | MS.gene80172:CDS | 45.0% | |
| GAGAACTTGCAGCCTATGAT+TGG | + | chr3.4:92395840-92395859 | MS.gene80172:CDS | 45.0% | |
| GCCTAACTTCTTACGGTTTG+AGG | + | chr3.4:92397319-92397338 | MS.gene80172:CDS | 45.0% | |
| GCCTCAAACCGTAAGAAGTT+AGG | - | chr3.4:92397323-92397342 | None:intergenic | 45.0% | |
| GCTGCATCAACTGTACTTGA+TGG | + | chr3.4:92395758-92395777 | MS.gene80172:CDS | 45.0% | |
| GGTGCATGTTCAATTACAGC+AGG | - | chr3.4:92397731-92397750 | None:intergenic | 45.0% | |
| GTAATTGAACATGCACCTGC+TGG | + | chr3.4:92397734-92397753 | MS.gene80172:CDS | 45.0% | |
| GTGAACTTAGTGACTGTCCT+AGG | - | chr3.4:92396508-92396527 | None:intergenic | 45.0% | |
| GTGACAGAACGAACTGATAG+AGG | + | chr3.4:92397257-92397276 | MS.gene80172:CDS | 45.0% | |
| TAAAGTCAGTAGCCTACCTG+AGG | - | chr3.4:92396856-92396875 | None:intergenic | 45.0% | |
| TCAAACACTGTGAGACCAAG+TGG | - | chr3.4:92395917-92395936 | None:intergenic | 45.0% | |
| TCAGTGGTCTGTTCCTTTGT+AGG | + | chr3.4:92397402-92397421 | MS.gene80172:CDS | 45.0% | |
| TCCAAACCTCACTATCAGCA+TGG | - | chr3.4:92397447-92397466 | None:intergenic | 45.0% | |
| TCTGAAGGCCAGTTGATTGA+TGG | + | chr3.4:92396769-92396788 | MS.gene80172:CDS | 45.0% | |
| TGCAGCCTATGATTGGAAAG+AGG | + | chr3.4:92395847-92395866 | MS.gene80172:CDS | 45.0% | |
| TGCGAGATTGGAATATGAGC+AGG | - | chr3.4:92397182-92397201 | None:intergenic | 45.0% | |
| TGCTGAATACAGGAAGTGGA+TGG | + | chr3.4:92397643-92397662 | MS.gene80172:CDS | 45.0% | |
| TGTGTGAAGATACCTCAGGT+AGG | + | chr3.4:92396841-92396860 | MS.gene80172:intron | 45.0% | |
| TTCCTTTCACAATGCTGGAC+TGG | + | chr3.4:92396710-92396729 | MS.gene80172:intron | 45.0% | |
| TTGAGAACTTTGCAAGGCCA+GGG | + | chr3.4:92397087-92397106 | MS.gene80172:CDS | 45.0% | |
| TTTGAGAACTTTGCAAGGCC+AGG | + | chr3.4:92397086-92397105 | MS.gene80172:CDS | 45.0% | |
| TTTGTAGGCCAACTGGACAA+GGG | + | chr3.4:92397417-92397436 | MS.gene80172:CDS | 45.0% | |
| ! | ACACATGGGTTGCTGAATAC+AGG | + | chr3.4:92397633-92397652 | MS.gene80172:CDS | 45.0% |
| ! | ATGCTGATAGTGAGGTTTGG+AGG | + | chr3.4:92397446-92397465 | MS.gene80172:CDS | 45.0% |
| ! | CAAGCAGAAGAAAGCATGCA+GGG | + | chr3.4:92395708-92395727 | MS.gene80172:CDS | 45.0% |
| ! | CACGGGATGCCATATCATTT+TGG | + | chr3.4:92397677-92397696 | MS.gene80172:CDS | 45.0% |
| ! | CCCTGTGCTAGTAGTTTTCA+TGG | + | chr3.4:92396576-92396595 | MS.gene80172:intron | 45.0% |
| ! | CTGGGAATTTTTGCATCAGC+TGG | - | chr3.4:92396966-92396985 | None:intergenic | 45.0% |
| ! | GGAAATCCATGCTGATAGTG+AGG | + | chr3.4:92397438-92397457 | MS.gene80172:CDS | 45.0% |
| ! | TCAAGCAGAAGAAAGCATGC+AGG | + | chr3.4:92395707-92395726 | MS.gene80172:CDS | 45.0% |
| ! | TCCATGCTGATAGTGAGGTT+TGG | + | chr3.4:92397443-92397462 | MS.gene80172:CDS | 45.0% |
| !! | ACTTGGTGCTCCTAATGTTC+GGG | + | chr3.4:92396212-92396231 | MS.gene80172:intron | 45.0% |
| !! | GTTTTAACACAGGCTGACCT+GGG | - | chr3.4:92396984-92397003 | None:intergenic | 45.0% |
| !! | GTTTTGGTGGGGAGAAGAAA+TGG | - | chr3.4:92395587-92395606 | None:intergenic | 45.0% |
| !! | TGGAAGATGGGTTAGTCCAA+AGG | - | chr3.4:92395655-92395674 | None:intergenic | 45.0% |
| !!! | TGCACAACCGCTACTTTTTG+AGG | + | chr3.4:92397235-92397254 | MS.gene80172:CDS | 45.0% |
| !!! | TGTTTTAACACAGGCTGACC+TGG | - | chr3.4:92396985-92397004 | None:intergenic | 45.0% |
| ATACTGCTACTGCTGACAGG+AGG | + | chr3.4:92396406-92396425 | MS.gene80172:intron | 50.0% | |
| ATAGGGATGCAGATGCCAAC+AGG | - | chr3.4:92397979-92397998 | None:intergenic | 50.0% | |
| ATCAGCTTCCTCACCTGCAA+AGG | + | chr3.4:92397772-92397791 | MS.gene80172:CDS | 50.0% | |
| CAGGAAGTGGATGGACAAAG+TGG | + | chr3.4:92397652-92397671 | MS.gene80172:CDS | 50.0% | |
| CGAACTGATAGAGGGTTTGC+AGG | + | chr3.4:92397266-92397285 | MS.gene80172:CDS | 50.0% | |
| CTGATAGAGGGTTTGCAGGT+TGG | + | chr3.4:92397270-92397289 | MS.gene80172:CDS | 50.0% | |
| CTGTTCCTTTGTAGGCCAAC+TGG | + | chr3.4:92397410-92397429 | MS.gene80172:CDS | 50.0% | |
| CTTTGTAGGCCAACTGGACA+AGG | + | chr3.4:92397416-92397435 | MS.gene80172:CDS | 50.0% | |
| GAAAAATGCCCTTTCGGCTG+TGG | + | chr3.4:92397898-92397917 | MS.gene80172:CDS | 50.0% | |
| GATGGCAATTCGAAGGCGAA+GGG | + | chr3.4:92396815-92396834 | MS.gene80172:CDS | 50.0% | |
| GGGTTGCTGAATACAGGAAG+TGG | + | chr3.4:92397639-92397658 | MS.gene80172:CDS | 50.0% | |
| GTCCAGTCCAGCATTGTGAA+AGG | - | chr3.4:92396715-92396734 | None:intergenic | 50.0% | |
| TACAGCAGGCTCTTTAGGCA+AGG | - | chr3.4:92397717-92397736 | None:intergenic | 50.0% | |
| TCAGCTTCCTCACCTGCAAA+GGG | + | chr3.4:92397773-92397792 | MS.gene80172:CDS | 50.0% | |
| TCTGCATCCCTATGCTCTGT+TGG | + | chr3.4:92397986-92398005 | MS.gene80172:CDS | 50.0% | |
| TGGATGGACAAAGTGGGACA+CGG | + | chr3.4:92397659-92397678 | MS.gene80172:CDS | 50.0% | |
| TTCCAGTGAGCAAGAACGCA+GGG | + | chr3.4:92395811-92395830 | MS.gene80172:CDS | 50.0% | |
| ! | ATAGAGGGTTTGCAGGTTGG+TGG | + | chr3.4:92397273-92397292 | MS.gene80172:CDS | 50.0% |
| ! | ATGAAGATCGGTGTCCTCAC+AGG | + | chr3.4:92395984-92396003 | MS.gene80172:CDS | 50.0% |
| ! | CTTGTCCAGTTGGCCTACAA+AGG | - | chr3.4:92397418-92397437 | None:intergenic | 50.0% |
| !! | TAGAGGGTTTGCAGGTTGGT+GGG | + | chr3.4:92397274-92397293 | MS.gene80172:CDS | 50.0% |
| AGACCAAGTGGTGCATCGTG+TGG | - | chr3.4:92395905-92395924 | None:intergenic | 55.0% | |
| AGCTTCCTCACCTGCAAAGG+GGG | + | chr3.4:92397775-92397794 | MS.gene80172:CDS | 55.0% | |
| AGTCCTGCAACAAGTCCAGC+AGG | - | chr3.4:92397752-92397771 | None:intergenic | 55.0% | |
| CAGCTTCCTCACCTGCAAAG+GGG | + | chr3.4:92397774-92397793 | MS.gene80172:CDS | 55.0% | |
| CTACTGCTGACAGGAGGCTA+GGG | + | chr3.4:92396412-92396431 | MS.gene80172:intron | 55.0% | |
| CTGCGTTCTTGCTCACTGGA+AGG | - | chr3.4:92395812-92395831 | None:intergenic | 55.0% | |
| CTTCCAGTGAGCAAGAACGC+AGG | + | chr3.4:92395810-92395829 | MS.gene80172:CDS | 55.0% | |
| GGATGGACAAAGTGGGACAC+GGG | + | chr3.4:92397660-92397679 | MS.gene80172:CDS | 55.0% | |
| GGATGGCAATTCGAAGGCGA+AGG | + | chr3.4:92396814-92396833 | MS.gene80172:CDS | 55.0% | |
| GGCTGTTGCGTTAGCTGCAT+TGG | + | chr3.4:92397919-92397938 | MS.gene80172:CDS | 55.0% | |
| GTACCACACGATGCACCACT+TGG | + | chr3.4:92395899-92395918 | MS.gene80172:CDS | 55.0% | |
| TCCAGTGAGCAAGAACGCAG+GGG | + | chr3.4:92395812-92395831 | MS.gene80172:CDS | 55.0% | |
| TGGTGGGGACGAGAGAAAGA+CGG | + | chr3.4:92397290-92397309 | MS.gene80172:CDS | 55.0% | |
| ! | AGATCGGTGTCCTCACAGGT+TGG | + | chr3.4:92395988-92396007 | MS.gene80172:intron | 55.0% |
| ! | AGCTTTGACATCTGCCGTGG+CGG | - | chr3.4:92395741-92395760 | None:intergenic | 55.0% |
| ! | TGCAGCTTTGACATCTGCCG+TGG | - | chr3.4:92395744-92395763 | None:intergenic | 55.0% |
| !! | AGAGGGTTTGCAGGTTGGTG+GGG | + | chr3.4:92397275-92397294 | MS.gene80172:CDS | 55.0% |
| AATGCCCCCCTTTGCAGGTG+AGG | - | chr3.4:92397783-92397802 | None:intergenic | 60.0% | |
| ACCCCTGCGTTCTTGCTCAC+TGG | - | chr3.4:92395816-92395835 | None:intergenic | 60.0% | |
| ACGCAACAGCCACAGCCGAA+AGG | - | chr3.4:92397910-92397929 | None:intergenic | 60.0% | |
| CGCAACAGCCACAGCCGAAA+GGG | - | chr3.4:92397909-92397928 | None:intergenic | 60.0% | |
| GCTACTGCTGACAGGAGGCT+AGG | + | chr3.4:92396411-92396430 | MS.gene80172:intron | 60.0% | |
| GCTTCCTCACCTGCAAAGGG+GGG | + | chr3.4:92397776-92397795 | MS.gene80172:CDS | 60.0% | |
| GGGATGCAGATGCCAACAGG+AGG | - | chr3.4:92397976-92397995 | None:intergenic | 60.0% | |
| TGCAGGGTATGTCACCGCCA+CGG | + | chr3.4:92395724-92395743 | MS.gene80172:CDS | 60.0% | |
| ! | TCACCTGCAAAGGGGGGCAT+TGG | + | chr3.4:92397782-92397801 | MS.gene80172:CDS | 60.0% |
| !! | CACCTGCAAAGGGGGGCATT+GGG | + | chr3.4:92397783-92397802 | MS.gene80172:CDS | 60.0% |
| !! | GCACCTGCTGGACTTGTTGC+AGG | + | chr3.4:92397746-92397765 | MS.gene80172:CDS | 60.0% |
| GTCCCAATGCCCCCCTTTGC+AGG | - | chr3.4:92397788-92397807 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92395569 | 92398078 | 92395569 | ID=MS.gene80172 |
| chr3.4 | mRNA | 92395569 | 92398078 | 92395569 | ID=MS.gene80172.t1;Parent=MS.gene80172 |
| chr3.4 | exon | 92395569 | 92396005 | 92395569 | ID=MS.gene80172.t1.exon1;Parent=MS.gene80172.t1 |
| chr3.4 | CDS | 92395569 | 92396005 | 92395569 | ID=cds.MS.gene80172.t1;Parent=MS.gene80172.t1 |
| chr3.4 | exon | 92396756 | 92396858 | 92396756 | ID=MS.gene80172.t1.exon2;Parent=MS.gene80172.t1 |
| chr3.4 | CDS | 92396756 | 92396858 | 92396756 | ID=cds.MS.gene80172.t1;Parent=MS.gene80172.t1 |
| chr3.4 | exon | 92396960 | 92398078 | 92396960 | ID=MS.gene80172.t1.exon3;Parent=MS.gene80172.t1 |
| chr3.4 | CDS | 92396960 | 92398078 | 92396960 | ID=cds.MS.gene80172.t1;Parent=MS.gene80172.t1 |
| Gene Sequence |
| Protein sequence |
