Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20575.t1 | XP_003618391.1 | 92.3 | 313 | 23 | 1 | 1 | 312 | 1 | 313 | 3.50E-165 | 590.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20575.t1 | P34909 | 36.4 | 88 | 49 | 3 | 211 | 293 | 3 | 88 | 1.7e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20575.t1 | G7KJX0 | 92.3 | 313 | 23 | 1 | 1 | 312 | 1 | 313 | 2.5e-165 | 590.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20575 | 0.879222 | 1.49E-69 | -1.69E-46 |
| MS.gene049222 | MS.gene20575 | 0.827538 | 1.48E-54 | -1.69E-46 |
| MS.gene049232 | MS.gene20575 | 0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene20575 | 0.848978 | 4.34E-60 | -1.69E-46 |
| MS.gene049320 | MS.gene20575 | 0.840705 | 7.40E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene20575 | 0.8353 | 1.82E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene20575 | 0.834195 | 3.45E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene20575 | 0.817738 | 2.82E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene20575 | 0.832938 | 7.10E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene20575 | 0.865816 | 4.49E-65 | -1.69E-46 |
| MS.gene050323 | MS.gene20575 | 0.874955 | 4.50E-68 | -1.69E-46 |
| MS.gene050333 | MS.gene20575 | 0.831823 | 1.34E-55 | -1.69E-46 |
| MS.gene050338 | MS.gene20575 | -0.845239 | 4.60E-59 | -1.69E-46 |
| MS.gene050444 | MS.gene20575 | 0.826451 | 2.69E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene20575 | 0.852536 | 4.33E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene20575 | 0.858351 | 8.74E-63 | -1.69E-46 |
| MS.gene050518 | MS.gene20575 | 0.831068 | 2.06E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene20575 | 0.859052 | 5.40E-63 | -1.69E-46 |
| MS.gene050612 | MS.gene20575 | 0.887701 | 1.13E-72 | -1.69E-46 |
| MS.gene050675 | MS.gene20575 | 0.837261 | 5.77E-57 | -1.69E-46 |
| MS.gene050699 | MS.gene20575 | 0.845229 | 4.63E-59 | -1.69E-46 |
| MS.gene050772 | MS.gene20575 | 0.809265 | 2.06E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene20575 | 0.829522 | 4.91E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene20575 | 0.806236 | 9.07E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene20575 | 0.832648 | 8.39E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene20575 | 0.829274 | 5.64E-55 | -1.69E-46 |
| MS.gene050876 | MS.gene20575 | 0.823463 | 1.37E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene20575 | 0.844092 | 9.36E-59 | -1.69E-46 |
| MS.gene050986 | MS.gene20575 | 0.837265 | 5.76E-57 | -1.69E-46 |
| MS.gene051138 | MS.gene20575 | -0.819168 | 1.34E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene20575 | 0.825282 | 5.10E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene20575 | 0.869929 | 2.14E-66 | -1.69E-46 |
| MS.gene051364 | MS.gene20575 | -0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene20575 | -0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene20575 | -0.831269 | 1.84E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene20575 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene052129 | MS.gene20575 | -0.843128 | 1.69E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene20575 | 0.817407 | 3.35E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene20575 | 0.829984 | 3.79E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene20575 | 0.83302 | 6.78E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene20575 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene052504 | MS.gene20575 | 0.809477 | 1.86E-50 | -1.69E-46 |
| MS.gene052506 | MS.gene20575 | 0.828508 | 8.65E-55 | -1.69E-46 |
| MS.gene052822 | MS.gene20575 | 0.838731 | 2.42E-57 | -1.69E-46 |
| MS.gene052823 | MS.gene20575 | 0.808484 | 3.03E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene20575 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene20575 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene20575 | 0.824236 | 9.00E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene20575 | 0.824454 | 8.00E-54 | -1.69E-46 |
| MS.gene053284 | MS.gene20575 | 0.816245 | 6.11E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene20575 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene053480 | MS.gene20575 | 0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene20575 | 0.826141 | 3.19E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene20575 | 0.823624 | 1.25E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene20575 | 0.827364 | 1.63E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene20575 | 0.811751 | 5.99E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene20575 | 0.813858 | 2.07E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene20575 | -0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene20575 | 0.851967 | 6.28E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene20575 | 0.866182 | 3.44E-65 | -1.69E-46 |
| MS.gene055251 | MS.gene20575 | -0.843992 | 9.96E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene20575 | 0.84755 | 1.08E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene20575 | 0.84401 | 9.85E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene20575 | 0.846543 | 2.03E-59 | -1.69E-46 |
| MS.gene055731 | MS.gene20575 | -0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene20575 | 0.889848 | 1.68E-73 | -1.69E-46 |
| MS.gene055750 | MS.gene20575 | 0.866614 | 2.51E-65 | -1.69E-46 |
| MS.gene055751 | MS.gene20575 | 0.895916 | 6.08E-76 | -1.69E-46 |
| MS.gene055776 | MS.gene20575 | 0.861195 | 1.22E-63 | -1.69E-46 |
| MS.gene055849 | MS.gene20575 | 0.839065 | 1.98E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene20575 | 0.877033 | 8.69E-69 | -1.69E-46 |
| MS.gene055942 | MS.gene20575 | -0.815722 | 7.99E-52 | -1.69E-46 |
| MS.gene056266 | MS.gene20575 | 0.841417 | 4.81E-58 | -1.69E-46 |
| MS.gene056387 | MS.gene20575 | 0.825017 | 5.89E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene20575 | 0.882462 | 1.02E-70 | -1.69E-46 |
| MS.gene056510 | MS.gene20575 | 0.829572 | 4.78E-55 | -1.69E-46 |
| MS.gene056618 | MS.gene20575 | -0.802806 | 4.71E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene20575 | 0.832517 | 9.04E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene20575 | 0.845109 | 4.98E-59 | -1.69E-46 |
| MS.gene056694 | MS.gene20575 | -0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene20575 | -0.806803 | 6.89E-50 | -1.69E-46 |
| MS.gene056898 | MS.gene20575 | 0.800193 | 1.62E-48 | -1.69E-46 |
| MS.gene05753 | MS.gene20575 | 0.819955 | 8.85E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene20575 | 0.815954 | 7.10E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene20575 | 0.832496 | 9.14E-56 | -1.69E-46 |
| MS.gene058334 | MS.gene20575 | -0.856093 | 4.06E-62 | -1.69E-46 |
| MS.gene05837 | MS.gene20575 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene058382 | MS.gene20575 | -0.833172 | 6.21E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene20575 | 0.849886 | 2.42E-60 | -1.69E-46 |
| MS.gene058544 | MS.gene20575 | 0.824467 | 7.95E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene20575 | 0.832975 | 6.96E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene20575 | 0.867085 | 1.77E-65 | -1.69E-46 |
| MS.gene059022 | MS.gene20575 | 0.856147 | 3.92E-62 | -1.69E-46 |
| MS.gene059023 | MS.gene20575 | 0.853134 | 2.92E-61 | -1.69E-46 |
| MS.gene059667 | MS.gene20575 | 0.816367 | 5.73E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene20575 | 0.860408 | 2.11E-63 | -1.69E-46 |
| MS.gene059718 | MS.gene20575 | 0.808416 | 3.13E-50 | -1.69E-46 |
| MS.gene059756 | MS.gene20575 | 0.814703 | 1.35E-51 | -1.69E-46 |
| MS.gene059837 | MS.gene20575 | 0.807769 | 4.30E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene20575 | 0.857398 | 1.68E-62 | -1.69E-46 |
| MS.gene06000 | MS.gene20575 | 0.846433 | 2.18E-59 | -1.69E-46 |
| MS.gene06027 | MS.gene20575 | 0.824957 | 6.09E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene20575 | 0.825286 | 5.09E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene20575 | 0.847227 | 1.32E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene20575 | 0.81929 | 1.26E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene20575 | 0.84734 | 1.23E-59 | -1.69E-46 |
| MS.gene060823 | MS.gene20575 | -0.856515 | 3.05E-62 | -1.69E-46 |
| MS.gene060982 | MS.gene20575 | 0.883108 | 5.93E-71 | -1.69E-46 |
| MS.gene061044 | MS.gene20575 | -0.854456 | 1.22E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene20575 | 0.828421 | 9.07E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20575.t1 | MTR_6g008950 | 92.332 | 313 | 23 | 1 | 1 | 312 | 1 | 313 | 0.0 | 578 |
| MS.gene20575.t1 | MTR_4g107090 | 31.739 | 230 | 118 | 7 | 13 | 206 | 21 | 247 | 1.63e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20575.t1 | AT5G62910 | 36.991 | 319 | 130 | 8 | 5 | 284 | 11 | 297 | 3.22e-42 | 149 |
| MS.gene20575.t1 | AT5G62910 | 36.991 | 319 | 130 | 8 | 5 | 284 | 11 | 297 | 3.22e-42 | 149 |
| MS.gene20575.t1 | AT3G48070 | 40.830 | 289 | 132 | 10 | 14 | 284 | 22 | 289 | 5.84e-40 | 142 |
| MS.gene20575.t1 | AT3G48070 | 40.830 | 289 | 132 | 10 | 14 | 284 | 22 | 289 | 3.62e-39 | 141 |
| MS.gene20575.t1 | AT3G48070 | 43.382 | 136 | 59 | 2 | 149 | 284 | 123 | 240 | 1.65e-30 | 117 |
| MS.gene20575.t1 | AT1G74870 | 29.537 | 281 | 162 | 7 | 13 | 292 | 20 | 265 | 1.10e-22 | 95.9 |
Find 72 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGGAGTTGTTTATTA+TGG | 0.175343 | 6.3:+4704867 | None:intergenic |
| AGGGTTTACCCTCTTCTTCT+TGG | 0.319817 | 6.3:+4706545 | None:intergenic |
| CTCTTTCTTCGTTAAGTCCT+TGG | 0.332998 | 6.3:+4704630 | None:intergenic |
| TTCCTTCATTCAATGGCTCC+TGG | 0.362277 | 6.3:-4706594 | None:intergenic |
| CTCCTGATTTCCTTGTATGA+TGG | 0.367192 | 6.3:+4704937 | None:intergenic |
| TGCATCCAAGCGAATGATTC+CGG | 0.369607 | 6.3:-4704892 | MS.gene20575:CDS |
| CGAGGCTGATGGACGATGTC+CGG | 0.381759 | 6.3:-4704326 | MS.gene20575:CDS |
| TAATCAATCGTATGCTCTAT+AGG | 0.396032 | 6.3:+4704670 | None:intergenic |
| AACCATCATACAAGGAAATC+AGG | 0.402516 | 6.3:-4704939 | MS.gene20575:CDS |
| GGATGCGATGTTGACTCAAC+TGG | 0.420478 | 6.3:-4705012 | MS.gene20575:CDS |
| GGAGTTGTTTATTATGGATC+CGG | 0.422445 | 6.3:+4704873 | None:intergenic |
| CTCTTCTTCTTGGAGGAGAA+AGG | 0.450083 | 6.3:+4706555 | None:intergenic |
| AAGATGGATGCCTTGATGAT+TGG | 0.450875 | 6.3:-4704753 | MS.gene20575:CDS |
| GTGATTATAACTACTTTGAA+TGG | 0.452304 | 6.3:+4704852 | None:intergenic |
| AGATGGATGCCTTGATGATT+GGG | 0.456418 | 6.3:-4704752 | MS.gene20575:CDS |
| CAGTCATGCCGTATGAGTAC+AGG | 0.456682 | 6.3:-4704229 | MS.gene20575:CDS |
| GGAGATCTCAATGAGGAAGA+TGG | 0.470422 | 6.3:-4704769 | MS.gene20575:CDS |
| GGAGAAAGGAGGGTCAGAAA+TGG | 0.470846 | 6.3:+4706569 | None:intergenic |
| CACATATTAGCTGTCGAGCA+TGG | 0.471745 | 6.3:-4704585 | MS.gene20575:CDS |
| GTTTACCCTCTTCTTCTTGG+AGG | 0.476527 | 6.3:+4706548 | None:intergenic |
| ACACGAACAAGGAAGAAATT+CGG | 0.481896 | 6.3:+4704387 | None:intergenic |
| TCTAAATCCTCGTAACAGAT+AGG | 0.489191 | 6.3:+4704421 | None:intergenic |
| AATCATGTAGATGAAAATGT+TGG | 0.490500 | 6.3:-4704286 | MS.gene20575:CDS |
| CTCGCAATGTGCTTAGAAGA+TGG | 0.498559 | 6.3:+4704973 | None:intergenic |
| ACTTAACGAAGAAAGAGTTC+AGG | 0.499489 | 6.3:-4704624 | MS.gene20575:CDS |
| CCGTATGAGTACAGGGTGCT+AGG | 0.509540 | 6.3:-4704221 | None:intergenic |
| GAATTTCTTCCTTGTTCGTG+TGG | 0.516729 | 6.3:-4704385 | MS.gene20575:CDS |
| TGGATCCGGAATCATTCGCT+TGG | 0.519416 | 6.3:+4704887 | None:intergenic |
| ACTCTCAGTTAAATTCAAAC+CGG | 0.523325 | 6.3:-4704507 | MS.gene20575:CDS |
| ACTGTTTGCGTTTAAAGCAT+CGG | 0.537816 | 6.3:+4704720 | None:intergenic |
| TATAGGAGACTCTGAAACCA+TGG | 0.540448 | 6.3:+4704687 | None:intergenic |
| ACATATTAGCTGTCGAGCAT+GGG | 0.540681 | 6.3:-4704584 | MS.gene20575:CDS |
| GAGGCTGATGGACGATGTCC+GGG | 0.541915 | 6.3:-4704325 | MS.gene20575:CDS |
| AGGAGAAAAGAAAGAGAGGA+TGG | 0.542995 | 6.3:-4704919 | MS.gene20575:CDS |
| CCTTGGACGAAGAGTGTCAT+CGG | 0.543532 | 6.3:+4704558 | None:intergenic |
| TTATGCGGCTTTGAGAGGTC+GGG | 0.543577 | 6.3:+4704529 | None:intergenic |
| TGCGTTTAAAGCATCGGCAA+CGG | 0.544753 | 6.3:+4704726 | None:intergenic |
| AATCAGGAGAAAAGAAAGAG+AGG | 0.545531 | 6.3:-4704923 | MS.gene20575:CDS |
| GTTATGCGGCTTTGAGAGGT+CGG | 0.547395 | 6.3:+4704528 | None:intergenic |
| CGTTGATTCAGAAGCAGCCA+AGG | 0.549296 | 6.3:-4704647 | MS.gene20575:CDS |
| GAGAGGTCGGGCAAACACCT+TGG | 0.554629 | 6.3:+4704541 | None:intergenic |
| ACAAAATTGTACCTTGGTCA+TGG | 0.559149 | 6.3:-4704474 | MS.gene20575:CDS |
| TTCTAAGCACATTGCGAGCG+AGG | 0.567304 | 6.3:-4704968 | MS.gene20575:CDS |
| TTCTTCTTGGAGGAGAAAGG+AGG | 0.571919 | 6.3:+4706558 | None:intergenic |
| GGAGGGTCAGAAATGGAACC+AGG | 0.572536 | 6.3:+4706576 | None:intergenic |
| CTTTCTCCTCCAAGAAGAAG+AGG | 0.573316 | 6.3:-4706554 | MS.gene20575:CDS |
| CAACGGCCTCCCAATCATCA+AGG | 0.573927 | 6.3:+4704743 | None:intergenic |
| GAGAGTTATGCGGCTTTGAG+AGG | 0.580285 | 6.3:+4704524 | None:intergenic |
| CCTAGCACCCTGTACTCATA+CGG | 0.584262 | 6.3:+4704221 | None:intergenic |
| AAACAGTAACGAGCATTCCA+TGG | 0.585443 | 6.3:-4704704 | MS.gene20575:CDS |
| AGCAAATTAAGCTTGACGTT+AGG | 0.588067 | 6.3:-4706079 | MS.gene20575:CDS |
| GTTATAATCACGATGAGTCA+AGG | 0.589115 | 6.3:-4704840 | MS.gene20575:CDS |
| CTTGGACGAAGAGTGTCATC+GGG | 0.589352 | 6.3:+4704559 | None:intergenic |
| AGATGAAATCCACACGAACA+AGG | 0.589677 | 6.3:+4704376 | None:intergenic |
| AATCACGATGAGTCAAGGAA+TGG | 0.591635 | 6.3:-4704835 | MS.gene20575:CDS |
| CCGATGACACTCTTCGTCCA+AGG | 0.603056 | 6.3:-4704558 | MS.gene20575:CDS |
| GGAGAATCAACCATCATACA+AGG | 0.605659 | 6.3:-4704947 | MS.gene20575:CDS |
| CGCGAACAATGGCTTTCTAG+AGG | 0.607394 | 6.3:-4706056 | MS.gene20575:intron |
| GCGATGTTGACTCAACTGGA+AGG | 0.610065 | 6.3:-4705008 | MS.gene20575:CDS |
| TCTTCTTGGAGGAGAAAGGA+GGG | 0.611617 | 6.3:+4706559 | None:intergenic |
| AGTCATGCCGTATGAGTACA+GGG | 0.616497 | 6.3:-4704228 | MS.gene20575:CDS |
| GTAACCACAAAATTGTACCT+TGG | 0.617000 | 6.3:-4704480 | MS.gene20575:CDS |
| TTGACGTTAGGCGCGAACAA+TGG | 0.623569 | 6.3:-4706067 | MS.gene20575:CDS |
| TTTCTCCTCCAAGAAGAAGA+GGG | 0.628934 | 6.3:-4706553 | MS.gene20575:intron |
| GAATTTAACTGAGAGTTATG+CGG | 0.630591 | 6.3:+4704514 | None:intergenic |
| TTCCTCATTGAGATCTCCTG+AGG | 0.639616 | 6.3:+4704774 | None:intergenic |
| ATTATTGTTCTCCATGACCA+AGG | 0.651182 | 6.3:+4704463 | None:intergenic |
| TAACAGATAGGACATTGACT+AGG | 0.694474 | 6.3:+4704433 | None:intergenic |
| CGATGTTGACTCAACTGGAA+GGG | 0.705315 | 6.3:-4705007 | MS.gene20575:CDS |
| TGGATGCCTTGATGATTGGG+AGG | 0.706476 | 6.3:-4704749 | MS.gene20575:CDS |
| TCAATGTCCTATCTGTTACG+AGG | 0.710111 | 6.3:-4704428 | MS.gene20575:CDS |
| TTCCTCAGGAGATCTCAATG+AGG | 0.718693 | 6.3:-4704776 | MS.gene20575:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAAATTCAATGA+TGG | - | chr6.3:4705696-4705715 | MS.gene20575:intron | 10.0% |
| !! | AAAAAGAAAAATCTTATCAT+TGG | + | chr6.3:4704845-4704864 | None:intergenic | 15.0% |
| !! | AATAAAAAATAAAAAGGAGA+AGG | + | chr6.3:4704282-4704301 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAAAGGAGAA+GGG | + | chr6.3:4704281-4704300 | None:intergenic | 15.0% |
| !! | TTAAAAAATATAATAGCGAA+TGG | + | chr6.3:4704997-4705016 | None:intergenic | 15.0% |
| !!! | TCATTCTGTTATTTATATAA+GGG | - | chr6.3:4704891-4704910 | MS.gene20575:CDS | 15.0% |
| !!! | TTAAAGATATTGTTTTTCAA+TGG | - | chr6.3:4705642-4705661 | MS.gene20575:intron | 15.0% |
| !! | AACATTATGAATGTCATAAA+AGG | + | chr6.3:4704580-4704599 | None:intergenic | 20.0% |
| !! | CATTATATACCAAAATGATT+AGG | - | chr6.3:4705040-4705059 | MS.gene20575:intron | 20.0% |
| !! | TATGAAAATAACTTATAGCT+TGG | - | chr6.3:4705403-4705422 | MS.gene20575:intron | 20.0% |
| !! | TTATTTATATAAGGGTTTAG+AGG | - | chr6.3:4704899-4704918 | MS.gene20575:CDS | 20.0% |
| !!! | AATCAAATTTTTATAGCTCA+AGG | + | chr6.3:4704338-4704357 | None:intergenic | 20.0% |
| !!! | AATCTTCATTTTTTATGTCA+TGG | - | chr6.3:4704505-4704524 | MS.gene20575:CDS | 20.0% |
| !!! | ATCAAATTTTTATAGCTCAA+GGG | + | chr6.3:4704337-4704356 | None:intergenic | 20.0% |
| !!! | ATTCATAATGTTTTTCTCTA+AGG | - | chr6.3:4704588-4704607 | MS.gene20575:CDS | 20.0% |
| !!! | GTCATTCTGTTATTTATATA+AGG | - | chr6.3:4704890-4704909 | MS.gene20575:CDS | 20.0% |
| !!! | TTATGATCATCATTTTCATA+TGG | - | chr6.3:4704776-4704795 | MS.gene20575:CDS | 20.0% |
| !!! | TTTTGTTTTTCAGTCAAAAA+GGG | - | chr6.3:4705771-4705790 | MS.gene20575:intron | 20.0% |
| ! | AAATGCAATGAAATGGAAAA+TGG | + | chr6.3:4704421-4704440 | None:intergenic | 25.0% |
| ! | AATCATGTAGATGAAAATGT+TGG | - | chr6.3:4706518-4706537 | MS.gene20575:intron | 25.0% |
| ! | AATGCAATGAAATGGAAAAT+GGG | + | chr6.3:4704420-4704439 | None:intergenic | 25.0% |
| ! | CAAAACAAAATGCAATGAAA+TGG | + | chr6.3:4704428-4704447 | None:intergenic | 25.0% |
| ! | GTGATTATAACTACTTTGAA+TGG | + | chr6.3:4705955-4705974 | None:intergenic | 25.0% |
| ! | TTATACTGTTTATCCAAACA+AGG | - | chr6.3:4705518-4705537 | MS.gene20575:intron | 25.0% |
| ! | TTCAAGATTCATGATTATGA+AGG | + | chr6.3:4704869-4704888 | None:intergenic | 25.0% |
| ! | TTGAATGGAGTTGTTTATTA+TGG | + | chr6.3:4705940-4705959 | None:intergenic | 25.0% |
| !! | AATTAAAGGCCTAATCATTT+TGG | + | chr6.3:4705052-4705071 | None:intergenic | 25.0% |
| !! | ATTGACTTAAAGAGAGTTTA+TGG | - | chr6.3:4705316-4705335 | MS.gene20575:intron | 25.0% |
| !! | ATTGTGAATTTTCAGACTAA+TGG | - | chr6.3:4704688-4704707 | MS.gene20575:CDS | 25.0% |
| !! | GCATAAACATTTGTCTTTTA+GGG | - | chr6.3:4705284-4705303 | MS.gene20575:intron | 25.0% |
| !! | TGCATAAACATTTGTCTTTT+AGG | - | chr6.3:4705283-4705302 | MS.gene20575:intron | 25.0% |
| !! | TGGAAATTTTCATTATGTCA+TGG | - | chr6.3:4704647-4704666 | MS.gene20575:CDS | 25.0% |
| !! | TTTTCATTATGTCATGGTTT+TGG | - | chr6.3:4704653-4704672 | MS.gene20575:CDS | 25.0% |
| !!! | ATCATTGATTCCGAATTTTT+AGG | - | chr6.3:4705219-4705238 | MS.gene20575:intron | 25.0% |
| !!! | ATGTCATGGTTTTATCATAA+AGG | - | chr6.3:4704519-4704538 | MS.gene20575:CDS | 25.0% |
| !!! | ATTCCGAATTTTTAGGTTTT+AGG | - | chr6.3:4705226-4705245 | MS.gene20575:intron | 25.0% |
| !!! | CACATGTTGATTTCAATTAA+AGG | + | chr6.3:4705066-4705085 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTTCAGTCAAAA+AGG | - | chr6.3:4705770-4705789 | MS.gene20575:intron | 25.0% |
| !!! | TCATTTTGGTATATAATGCA+AGG | + | chr6.3:4705038-4705057 | None:intergenic | 25.0% |
| !!! | TTGCTTTGTTTTTGATGTTT+TGG | - | chr6.3:4704627-4704646 | MS.gene20575:CDS | 25.0% |
| !!! | TTTGTTTTGTTGAGTTCAAA+GGG | - | chr6.3:4704439-4704458 | MS.gene20575:CDS | 25.0% |
| !!! | TTTTGTTTTGTTGAGTTCAA+AGG | - | chr6.3:4704438-4704457 | MS.gene20575:CDS | 25.0% |
| AAAATAAGTCGATCCAAACA+GGG | + | chr6.3:4705252-4705271 | None:intergenic | 30.0% | |
| ACTCTCAGTTAAATTCAAAC+CGG | - | chr6.3:4706297-4706316 | MS.gene20575:intron | 30.0% | |
| ATTTGACTGTTATTGCAGTA+AGG | + | chr6.3:4705544-4705563 | None:intergenic | 30.0% | |
| GAATTTAACTGAGAGTTATG+CGG | + | chr6.3:4706293-4706312 | None:intergenic | 30.0% | |
| GGAAATGCAATGCAATATAA+TGG | + | chr6.3:4704559-4704578 | None:intergenic | 30.0% | |
| TAAAATAAGTCGATCCAAAC+AGG | + | chr6.3:4705253-4705272 | None:intergenic | 30.0% | |
| TAATCAATCGTATGCTCTAT+AGG | + | chr6.3:4706137-4706156 | None:intergenic | 30.0% | |
| TATAATAGCGAATGGATCAA+AGG | + | chr6.3:4704989-4705008 | None:intergenic | 30.0% | |
| ! | CGATCTTTTTGTGACAAAAA+AGG | + | chr6.3:4706457-4706476 | None:intergenic | 30.0% |
| ! | TTATATAGTTTTCTGCATCC+CGG | + | chr6.3:4706500-4706519 | None:intergenic | 30.0% |
| !!! | TCAATGATGGTTTTTGAAGT+TGG | - | chr6.3:4705709-4705728 | MS.gene20575:intron | 30.0% |
| !!! | TCATGGTTTTGGTTATCTTA+TGG | - | chr6.3:4704664-4704683 | MS.gene20575:CDS | 30.0% |
| AACCATCATACAAGGAAATC+AGG | - | chr6.3:4705865-4705884 | MS.gene20575:intron | 35.0% | |
| AATCAGGAGAAAAGAAAGAG+AGG | - | chr6.3:4705881-4705900 | MS.gene20575:intron | 35.0% | |
| ACAAAATTGTACCTTGGTCA+TGG | - | chr6.3:4706330-4706349 | MS.gene20575:intron | 35.0% | |
| ACACGAACAAGGAAGAAATT+CGG | + | chr6.3:4706420-4706439 | None:intergenic | 35.0% | |
| ACTTAACGAAGAAAGAGTTC+AGG | - | chr6.3:4706180-4706199 | MS.gene20575:intron | 35.0% | |
| AGCAAATTAAGCTTGACGTT+AGG | - | chr6.3:4704725-4704744 | MS.gene20575:CDS | 35.0% | |
| ATTATTGTTCTCCATGACCA+AGG | + | chr6.3:4706344-4706363 | None:intergenic | 35.0% | |
| CTCTTTAAGTCAATCCAAAC+AGG | + | chr6.3:4705310-4705329 | None:intergenic | 35.0% | |
| GGAGTTGTTTATTATGGATC+CGG | + | chr6.3:4705934-4705953 | None:intergenic | 35.0% | |
| GGGCCTAAAACCTAAAAATT+CGG | + | chr6.3:4705232-4705251 | None:intergenic | 35.0% | |
| GTAACCACAAAATTGTACCT+TGG | - | chr6.3:4706324-4706343 | MS.gene20575:intron | 35.0% | |
| GTTATAATCACGATGAGTCA+AGG | - | chr6.3:4705964-4705983 | MS.gene20575:intron | 35.0% | |
| TCTAAATCCTCGTAACAGAT+AGG | + | chr6.3:4706386-4706405 | None:intergenic | 35.0% | |
| ! | AAGCTTAGCTTAGTTAGTCT+TGG | - | chr6.3:4705143-4705162 | MS.gene20575:intron | 35.0% |
| ! | ACTGTTTGCGTTTAAAGCAT+CGG | + | chr6.3:4706087-4706106 | None:intergenic | 35.0% |
| ! | ATGACCAAGGTACAATTTTG+TGG | + | chr6.3:4706331-4706350 | None:intergenic | 35.0% |
| ! | GAATTTTCAGACTAATGGCT+CGG | - | chr6.3:4704693-4704712 | MS.gene20575:CDS | 35.0% |
| ! | TAACAGATAGGACATTGACT+AGG | + | chr6.3:4706374-4706393 | None:intergenic | 35.0% |
| !! | GTTATTTTCATAAGCTGTCC+TGG | + | chr6.3:4705395-4705414 | None:intergenic | 35.0% |
| !!! | GAGTCAAGGAATGGTTTTAA+CGG | - | chr6.3:4705978-4705997 | MS.gene20575:intron | 35.0% |
| AAACAGTAACGAGCATTCCA+TGG | - | chr6.3:4706100-4706119 | MS.gene20575:CDS | 40.0% | |
| AATCACGATGAGTCAAGGAA+TGG | - | chr6.3:4705969-4705988 | MS.gene20575:intron | 40.0% | |
| ACATATTAGCTGTCGAGCAT+GGG | - | chr6.3:4706220-4706239 | MS.gene20575:intron | 40.0% | |
| AGATGAAATCCACACGAACA+AGG | + | chr6.3:4706431-4706450 | None:intergenic | 40.0% | |
| AGGAGAAAAGAAAGAGAGGA+TGG | - | chr6.3:4705885-4705904 | MS.gene20575:intron | 40.0% | |
| CTCCTGATTTCCTTGTATGA+TGG | + | chr6.3:4705870-4705889 | None:intergenic | 40.0% | |
| CTCTTTCTTCGTTAAGTCCT+TGG | + | chr6.3:4706177-4706196 | None:intergenic | 40.0% | |
| CTTACTTCCAAAAGATCTCC+AGG | - | chr6.3:4705374-4705393 | MS.gene20575:intron | 40.0% | |
| GAATTTCTTCCTTGTTCGTG+TGG | - | chr6.3:4706419-4706438 | MS.gene20575:intron | 40.0% | |
| GGAGAATCAACCATCATACA+AGG | - | chr6.3:4705857-4705876 | MS.gene20575:intron | 40.0% | |
| TAGAAGCTGTTTGATCAGCA+TGG | + | chr6.3:4705591-4705610 | None:intergenic | 40.0% | |
| TCAATGTCCTATCTGTTACG+AGG | - | chr6.3:4706376-4706395 | MS.gene20575:intron | 40.0% | |
| TTGTCACAAAAAGATCGTCG+AGG | - | chr6.3:4706460-4706479 | MS.gene20575:intron | 40.0% | |
| TTTCTCCTCCAAGAAGAAGA+GGG | - | chr6.3:4704251-4704270 | MS.gene20575:CDS | 40.0% | |
| ! | AAATCTTTTCCTCGCTAGAC+GGG | - | chr6.3:4705560-4705579 | MS.gene20575:intron | 40.0% |
| ! | AAGATGGATGCCTTGATGAT+TGG | - | chr6.3:4706051-4706070 | MS.gene20575:intron | 40.0% |
| ! | AGATGGATGCCTTGATGATT+GGG | - | chr6.3:4706052-4706071 | MS.gene20575:intron | 40.0% |
| ! | CAAATCTTTTCCTCGCTAGA+CGG | - | chr6.3:4705559-4705578 | MS.gene20575:intron | 40.0% |
| ! | CAATTTTGTGGTTACTGTGC+CGG | + | chr6.3:4706319-4706338 | None:intergenic | 40.0% |
| !! | TAGCTTAGTTAGTCTTGGCA+GGG | - | chr6.3:4705148-4705167 | MS.gene20575:intron | 40.0% |
| !! | TATAGGAGACTCTGAAACCA+TGG | + | chr6.3:4706120-4706139 | None:intergenic | 40.0% |
| !! | TATTGCAGTAAGGCCTTGTT+TGG | + | chr6.3:4705534-4705553 | None:intergenic | 40.0% |
| !! | TTAGCTTAGTTAGTCTTGGC+AGG | - | chr6.3:4705147-4705166 | MS.gene20575:intron | 40.0% |
| !!! | TTTAGGTTTTAGGCCCTGTT+TGG | - | chr6.3:4705236-4705255 | MS.gene20575:intron | 40.0% |
| !!! | TTTGTCTTTTAGGGCCTGTT+TGG | - | chr6.3:4705293-4705312 | MS.gene20575:intron | 40.0% |
| AAAAAGATCGTCGAGGCTGA+TGG | - | chr6.3:4706467-4706486 | MS.gene20575:intron | 45.0% | |
| AGGGTTTACCCTCTTCTTCT+TGG | + | chr6.3:4704262-4704281 | None:intergenic | 45.0% | |
| AGTCATGCCGTATGAGTACA+GGG | - | chr6.3:4706576-4706595 | MS.gene20575:CDS | 45.0% | |
| CACATATTAGCTGTCGAGCA+TGG | - | chr6.3:4706219-4706238 | MS.gene20575:intron | 45.0% | |
| CTCGCAATGTGCTTAGAAGA+TGG | + | chr6.3:4705834-4705853 | None:intergenic | 45.0% | |
| CTCTTCTTCTTGGAGGAGAA+AGG | + | chr6.3:4704252-4704271 | None:intergenic | 45.0% | |
| CTTTCTCCTCCAAGAAGAAG+AGG | - | chr6.3:4704250-4704269 | MS.gene20575:CDS | 45.0% | |
| GGAGATCTCAATGAGGAAGA+TGG | - | chr6.3:4706035-4706054 | MS.gene20575:intron | 45.0% | |
| GTTTACCCTCTTCTTCTTGG+AGG | + | chr6.3:4704259-4704278 | None:intergenic | 45.0% | |
| TCTTCTTGGAGGAGAAAGGA+GGG | + | chr6.3:4704248-4704267 | None:intergenic | 45.0% | |
| TGCATCCAAGCGAATGATTC+CGG | - | chr6.3:4705912-4705931 | MS.gene20575:intron | 45.0% | |
| TTCCTCAGGAGATCTCAATG+AGG | - | chr6.3:4706028-4706047 | MS.gene20575:intron | 45.0% | |
| TTCCTCATTGAGATCTCCTG+AGG | + | chr6.3:4706033-4706052 | None:intergenic | 45.0% | |
| TTCTTCTTGGAGGAGAAAGG+AGG | + | chr6.3:4704249-4704268 | None:intergenic | 45.0% | |
| ! | AAGCTGTCCTGGAGATCTTT+TGG | + | chr6.3:4705384-4705403 | None:intergenic | 45.0% |
| ! | AGTACGAGTACGTTTTCCTC+AGG | - | chr6.3:4706014-4706033 | MS.gene20575:intron | 45.0% |
| !! | CGATGTTGACTCAACTGGAA+GGG | - | chr6.3:4705797-4705816 | MS.gene20575:intron | 45.0% |
| !! | TGCGTTTAAAGCATCGGCAA+CGG | + | chr6.3:4706081-4706100 | None:intergenic | 45.0% |
| !! | AAAATGAATAAAAAATAAAA+AGG | + | chr6.3:4704288-4704307 | None:intergenic | 5.0% |
| CAGTCATGCCGTATGAGTAC+AGG | - | chr6.3:4706575-4706594 | MS.gene20575:CDS | 50.0% | |
| CGCGAACAATGGCTTTCTAG+AGG | - | chr6.3:4704748-4704767 | MS.gene20575:CDS | 50.0% | |
| GGAGAAAGGAGGGTCAGAAA+TGG | + | chr6.3:4704238-4704257 | None:intergenic | 50.0% | |
| TGGATCCGGAATCATTCGCT+TGG | + | chr6.3:4705920-4705939 | None:intergenic | 50.0% | |
| TTCTAAGCACATTGCGAGCG+AGG | - | chr6.3:4705836-4705855 | MS.gene20575:intron | 50.0% | |
| TTGACGTTAGGCGCGAACAA+TGG | - | chr6.3:4704737-4704756 | MS.gene20575:CDS | 50.0% | |
| ! | TGGATGCCTTGATGATTGGG+AGG | - | chr6.3:4706055-4706074 | MS.gene20575:intron | 50.0% |
| !! | AGTTAGTCTTGGCAGGGACA+TGG | - | chr6.3:4705154-4705173 | MS.gene20575:intron | 50.0% |
| !! | CCTTGGACGAAGAGTGTCAT+CGG | + | chr6.3:4706249-4706268 | None:intergenic | 50.0% |
| !! | CGTTGATTCAGAAGCAGCCA+AGG | - | chr6.3:4706157-4706176 | MS.gene20575:intron | 50.0% |
| !! | CTTGGACGAAGAGTGTCATC+GGG | + | chr6.3:4706248-4706267 | None:intergenic | 50.0% |
| !! | GAGAGTTATGCGGCTTTGAG+AGG | + | chr6.3:4706283-4706302 | None:intergenic | 50.0% |
| !! | GCGATGTTGACTCAACTGGA+AGG | - | chr6.3:4705796-4705815 | MS.gene20575:intron | 50.0% |
| !! | GGATGCGATGTTGACTCAAC+TGG | - | chr6.3:4705792-4705811 | MS.gene20575:intron | 50.0% |
| !! | GTTATGCGGCTTTGAGAGGT+CGG | + | chr6.3:4706279-4706298 | None:intergenic | 50.0% |
| !! | TTATGCGGCTTTGAGAGGTC+GGG | + | chr6.3:4706278-4706297 | None:intergenic | 50.0% |
| ATGGCTAATCCCGTCTAGCG+AGG | + | chr6.3:4705572-4705591 | None:intergenic | 55.0% | |
| CAACGGCCTCCCAATCATCA+AGG | + | chr6.3:4706064-4706083 | None:intergenic | 55.0% | |
| CCGATGACACTCTTCGTCCA+AGG | - | chr6.3:4706246-4706265 | MS.gene20575:intron | 55.0% | |
| GGAGGGTCAGAAATGGAACC+AGG | + | chr6.3:4704231-4704250 | None:intergenic | 55.0% | |
| GAGAGGTCGGGCAAACACCT+TGG | + | chr6.3:4706266-4706285 | None:intergenic | 60.0% | |
| ! | CGAGGCTGATGGACGATGTC+CGG | - | chr6.3:4706478-4706497 | MS.gene20575:intron | 60.0% |
| ! | GAGGCTGATGGACGATGTCC+GGG | - | chr6.3:4706479-4706498 | MS.gene20575:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 4704222 | 4706604 | 4704222 | ID=MS.gene20575 |
| chr6.3 | mRNA | 4704222 | 4706604 | 4704222 | ID=MS.gene20575.t1;Parent=MS.gene20575 |
| chr6.3 | exon | 4706554 | 4706604 | 4706554 | ID=MS.gene20575.t1.exon1;Parent=MS.gene20575.t1 |
| chr6.3 | CDS | 4706554 | 4706604 | 4706554 | ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1 |
| chr6.3 | exon | 4706057 | 4706123 | 4706057 | ID=MS.gene20575.t1.exon2;Parent=MS.gene20575.t1 |
| chr6.3 | CDS | 4706057 | 4706123 | 4706057 | ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1 |
| chr6.3 | exon | 4704222 | 4705042 | 4704222 | ID=MS.gene20575.t1.exon3;Parent=MS.gene20575.t1 |
| chr6.3 | CDS | 4704222 | 4705042 | 4704222 | ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1 |
| Gene Sequence |
| Protein sequence |
