AlfalfaGEDB | MS.gene20575

M. sativa cultivar XinJiangDaYe / MS.gene20575

KEGG: -
GO: -
PFAM: PF14570.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20575.t1	XP_003618391.1	92.3	313	23	1	1	312	1	313	3.50E-165	590.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20575.t1	P34909	36.4	88	49	3	211	293	3	88	1.7e-11	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20575.t1	G7KJX0	92.3	313	23	1	1	312	1	313	2.5e-165	590.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene20575	0.879222	1.49E-69	-1.69E-46
MS.gene049222	MS.gene20575	0.827538	1.48E-54	-1.69E-46
MS.gene049232	MS.gene20575	0.805773	1.14E-49	-1.69E-46
MS.gene049285	MS.gene20575	0.848978	4.34E-60	-1.69E-46
MS.gene049320	MS.gene20575	0.840705	7.40E-58	-1.69E-46
MS.gene049633	MS.gene20575	0.8353	1.82E-56	-1.69E-46
MS.gene05010	MS.gene20575	0.834195	3.45E-56	-1.69E-46
MS.gene050163	MS.gene20575	0.817738	2.82E-52	-1.69E-46
MS.gene050165	MS.gene20575	0.832938	7.10E-56	-1.69E-46
MS.gene050170	MS.gene20575	0.865816	4.49E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20575.t1	MTR_6g008950	92.332	313	23	1	1	312	1	313	0.0	578
MS.gene20575.t1	MTR_4g107090	31.739	230	118	7	13	206	21	247	1.63e-14	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20575.t1	AT5G62910	36.991	319	130	8	5	284	11	297	3.22e-42	149
MS.gene20575.t1	AT5G62910	36.991	319	130	8	5	284	11	297	3.22e-42	149
MS.gene20575.t1	AT3G48070	40.830	289	132	10	14	284	22	289	5.84e-40	142
MS.gene20575.t1	AT3G48070	40.830	289	132	10	14	284	22	289	3.62e-39	141
MS.gene20575.t1	AT3G48070	43.382	136	59	2	149	284	123	240	1.65e-30	117
MS.gene20575.t1	AT1G74870	29.537	281	162	7	13	292	20	265	1.10e-22	95.9

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Find 72 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAACGAGCATTCCA+TGG	0.585443	6.3:-4704704	MS.gene20575:CDS
AACCATCATACAAGGAAATC+AGG	0.402516	6.3:-4704939	MS.gene20575:CDS
AAGATGGATGCCTTGATGAT+TGG	0.450875	6.3:-4704753	MS.gene20575:CDS
AATCACGATGAGTCAAGGAA+TGG	0.591635	6.3:-4704835	MS.gene20575:CDS
AATCAGGAGAAAAGAAAGAG+AGG	0.545531	6.3:-4704923	MS.gene20575:CDS
AATCATGTAGATGAAAATGT+TGG	0.490500	6.3:-4704286	MS.gene20575:CDS
ACAAAATTGTACCTTGGTCA+TGG	0.559149	6.3:-4704474	MS.gene20575:CDS
ACACGAACAAGGAAGAAATT+CGG	0.481896	6.3:+4704387	None:intergenic
ACATATTAGCTGTCGAGCAT+GGG	0.540681	6.3:-4704584	MS.gene20575:CDS
ACTCTCAGTTAAATTCAAAC+CGG	0.523325	6.3:-4704507	MS.gene20575:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGTCGATCCAAACA+GGG	+	chr6.3:4705252-4705271	None:intergenic	30.0%
ACTCTCAGTTAAATTCAAAC+CGG	-	chr6.3:4706297-4706316	MS.gene20575:intron	30.0%
ATTTGACTGTTATTGCAGTA+AGG	+	chr6.3:4705544-4705563	None:intergenic	30.0%
GAATTTAACTGAGAGTTATG+CGG	+	chr6.3:4706293-4706312	None:intergenic	30.0%
GGAAATGCAATGCAATATAA+TGG	+	chr6.3:4704559-4704578	None:intergenic	30.0%
TAAAATAAGTCGATCCAAAC+AGG	+	chr6.3:4705253-4705272	None:intergenic	30.0%
TAATCAATCGTATGCTCTAT+AGG	+	chr6.3:4706137-4706156	None:intergenic	30.0%
TATAATAGCGAATGGATCAA+AGG	+	chr6.3:4704989-4705008	None:intergenic	30.0%
AACCATCATACAAGGAAATC+AGG	-	chr6.3:4705865-4705884	MS.gene20575:intron	35.0%
AATCAGGAGAAAAGAAAGAG+AGG	-	chr6.3:4705881-4705900	MS.gene20575:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	4704222	4706604	4704222	ID=MS.gene20575
chr6.3	mRNA	4704222	4706604	4704222	ID=MS.gene20575.t1;Parent=MS.gene20575
chr6.3	exon	4706554	4706604	4706554	ID=MS.gene20575.t1.exon1;Parent=MS.gene20575.t1
chr6.3	CDS	4706554	4706604	4706554	ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1
chr6.3	exon	4706057	4706123	4706057	ID=MS.gene20575.t1.exon2;Parent=MS.gene20575.t1
chr6.3	CDS	4706057	4706123	4706057	ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1
chr6.3	exon	4704222	4705042	4704222	ID=MS.gene20575.t1.exon3;Parent=MS.gene20575.t1
chr6.3	CDS	4704222	4705042	4704222	ID=cds.MS.gene20575.t1;Parent=MS.gene20575.t1

Gene Sequence

>MS.gene20575

ATGGCTCCTGGTTCCATTTCTGACCCTCCTTTCTCCTCCAAGAAGAAGAGGGTAAACCCTTCTCCTTTTTATTTTTTATTCATTTTTGTGTTATTGTATTTTTTTTTTCAAACCCTTGAGCTATAAAAATTTGATTTTTATTTTTATTTTGTGATTTTTTCAATATTGAGAGATAAAAATTTGATTTTTGTAAAACCCATTTTCCATTTCATTGCATTTTGTTTTGTTGAGTTCAAAGGGTAGCAAATTCTATATTTCTTTCTATGTTTTGTTGTTCTTGAAAAATCTTCATTTTTTATGTCATGGTTTTATCATAAAGGTTTATTCTTATTTTCCATTATATTGCATTGCATTTCCTTTTATGACATTCATAATGTTTTTCTCTAAGGAAGCAATTTTTCTTTTTTGCTTTGTTTTTGATGTTTTGGAAATTTTCATTATGTCATGGTTTTGGTTATCTTATGGCATTGTGAATTTTCAGACTAATGGCTCGGCGAAACTGAAGCAAATTAAGCTTGACGTTAGGCGCGAACAATGGCTTTCTAGAGGTGACTTTATGATCATCATTTTCATATGGAATTTTTTTGACATATTGATTATGTTTTTCATTGTTCAATCAACCAATGATAAGATTTTTCTTTTTGCCTTCATAATCATGAATCTTGAATGTCATTCTGTTATTTATATAAGGGTTTAGAGGATTTAGAGATTTTTGAAGATTTCTAGAGATGTTTGTTGATTCTCTGATATTGACATGCATTAGTCCTTTGATCCATTCGCTATTATATTTTTTAAATATTACTTTGTTCGAATCCTTGCATTATATACCAAAATGATTAGGCCTTTAATTGAAATCAACATGTGTGAAATGTTTTACATTTGAACTTTCAAATTGTAACATTCAAACTAATATGACATTCAAAGCTTAGCTTAGTTAGTCTTGGCAGGGACATGGCTTACAACTGATCATGTTTGAAGCATCGTGCGACTGTCTTTTATCATTGATTCCGAATTTTTAGGTTTTAGGCCCTGTTTGGATCGACTTATTTTAGTTTATCAACTGCATAAACATTTGTCTTTTAGGGCCTGTTTGGATTGACTTAAAGAGAGTTTATGGAAACAGCTTATGACATATTCATAAGCTGTTTTCGTCTTACTTCCAAAAGATCTCCAGGACAGCTTATGAAAATAACTTATAGCTTGGATAAAATTAGTTTGACTTTATTTTATCTTTTATCATAGAAATAGCTTATAGATAAGCACTACATGATAAGCATTTATGCTATAAGAGCTTAATTATACTGTTTATCCAAACAAGGCCTTACTGCAATAACAGTCAAATCTTTTCCTCGCTAGACGGGATTAGCCATGCTGATCAAACAGCTTCTATAGATAAATATTAAACAGAATTCAAAGTGAATTAAAGATATTGTTTTTCAATGGAATGCAAGAAATAGTCGTAATATCATTTTATTTTAAAAAAAAATTCAATGATGGTTTTTGAAGTTGGTAACTTTTTCATTACTTAAATGTTAATTGTTGATCATACTTTTGTTTTTCAGTCAAAAAGGGATGCGATGTTGACTCAACTGGAAGGGTTGATAGTGATCCATCTTCTAAGCACATTGCGAGCGAGGAGAATCAACCATCATACAAGGAAATCAGGAGAAAAGAAAGAGAGGATGGTACATGCATCCAAGCGAATGATTCCGGATCCATAATAAACAACTCCATTCAAAGTAGTTATAATCACGATGAGTCAAGGAATGGTTTTAACGGAAGTAGAAGCAGCAGTACGAGTACGTTTTCCTCAGGAGATCTCAATGAGGAAGATGGATGCCTTGATGATTGGGAGGCCGTTGCCGATGCTTTAAACGCAAACAGTAACGAGCATTCCATGGTTTCAGAGTCTCCTATAGAGCATACGATTGATTACGTTGATTCAGAAGCAGCCAAGGACTTAACGAAGAAAGAGTTCAGGTCAGCAGTTTCTGAATCACATATTAGCTGTCGAGCATGGGAACCCGATGACACTCTTCGTCCAAGGTGTTTGCCCGACCTCTCAAAGCCGCATAACTCTCAGTTAAATTCAAACCGGCACAGTAACCACAAAATTGTACCTTGGTCATGGAGAACAATAATTTCTCAACCTAGTCAATGTCCTATCTGTTACGAGGATTTAGACGTGACAGACTCCGAATTTCTTCCTTGTTCGTGTGGATTTCATCTCTGCCTTTTTTGTCACAAAAAGATCGTCGAGGCTGATGGACGATGTCCGGGATGCAGAAAACTATATAATCATGTAGATGAAAATGTTGGATTCAATATAGAAACAAACACTTTTTATATGACTCAGTCATGCCGTATGAGTACAGGGTGCTAG

Protein sequence

>MS.gene20575.t1

MAPGSISDPPFSSKKKRTNGSAKLKQIKLDVRREQWLSRVKKGCDVDSTGRVDSDPSSKHIASEENQPSYKEIRRKEREDGTCIQANDSGSIINNSIQSSYNHDESRNGFNGSRSSSTSTFSSGDLNEEDGCLDDWEAVADALNANSNEHSMVSESPIEHTIDYVDSEAAKDLTKKEFRSAVSESHISCRAWEPDDTLRPRCLPDLSKPHNSQLNSNRHSNHKIVPWSWRTIISQPSQCPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIVEADGRCPGCRKLYNHVDENVGFNIETNTFYMTQSCRMSTGC