AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003490.t1 MTR_4g074260 99.612 258 1 0 1 258 2 259 0.0 519
MS.gene003490.t1 MTR_7g027235 93.050 259 17 1 1 258 2 260 4.95e-178 490
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003490.t1 AT3G62870 87.984 258 28 1 1 258 2 256 1.79e-169 468
MS.gene003490.t1 AT2G47610 87.552 241 30 0 18 258 17 257 1.67e-161 448

Find 83 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTCTTGGCTTGGGATT+TGG 0.209141 4.2:+34454881 None:intergenic
AGGCCATACTTCACATTAAT+AGG 0.264776 4.2:+34455502 None:intergenic
CTTTGCCTTGGTCTTGGCTT+GGG 0.278418 4.2:+34454875 None:intergenic
CAGGGTCCTAGAGGCGATTA+AGG 0.309642 4.2:-34455055 MS.gene003490:intron
CCTTTCCTTTGCCTTGGTCT+TGG 0.313711 4.2:+34454869 None:intergenic
CTTCGGCCACTTCACGAATC+TGG 0.319581 4.2:+34456556 None:intergenic
CCTTTGCCTTGGTCTTGGCT+TGG 0.320697 4.2:+34454874 None:intergenic
GAGAAGCGTCCAAAGCAATT+TGG 0.321546 4.2:-34456614 MS.gene003490:CDS
TTCTTCTTTGAAGCTGCAAC+TGG 0.338108 4.2:+34456761 None:intergenic
TTGCCCTTAACAATACAGTA+TGG 0.340642 4.2:+34455256 None:intergenic
CATTCTCTGGGCAGCCTCCT+TGG 0.347883 4.2:+34454839 None:intergenic
CCTCCAATTCCAAATTGCTT+TGG 0.359017 4.2:+34456605 None:intergenic
AAGCCTATTAATGTGAAGTA+TGG 0.361147 4.2:-34455505 MS.gene003490:CDS
CGTCCAAAGCAATTTGGAAT+TGG 0.369614 4.2:-34456608 MS.gene003490:CDS
TTCTTCTCAGCCTTGTCCTC+AGG 0.377096 4.2:+34455586 None:intergenic
CTCTGCACCTGAACGTTCTT+CGG 0.382996 4.2:+34456539 None:intergenic
GAAGTGGGGTGGTGGAATCA+TGG 0.397393 4.2:-34454907 MS.gene003490:CDS
AATCCCATACTGTATTGTTA+AGG 0.413635 4.2:-34455260 MS.gene003490:CDS
AATAAGCCTTTCCTTTGCCT+TGG 0.418296 4.2:+34454863 None:intergenic
TCTGGCTTCCAGCCTTGTGC+AGG 0.421984 4.2:-34455291 MS.gene003490:CDS
ACAACTCCTAGGTCATTCTC+TGG 0.422899 4.2:+34454826 None:intergenic
TCCATCTTCCTGCACAAGGC+TGG 0.428911 4.2:+34455283 None:intergenic
AAGGGCTCAGGCAGAGGCTG+AGG 0.430646 4.2:-34455548 MS.gene003490:CDS
TACAGGAAGAAGTGGGGTGG+TGG 0.431668 4.2:-34454915 MS.gene003490:CDS
TCCAGCCTTGTGCAGGAAGA+TGG 0.436588 4.2:-34455284 MS.gene003490:CDS
ACCCCATTGAATTAGTTGTC+TGG 0.442276 4.2:-34455309 MS.gene003490:CDS
AGCCAGACAACTAATTCAAT+GGG 0.443985 4.2:+34455307 None:intergenic
TGAGGAGTACAGGAAGAAGT+GGG 0.451890 4.2:-34454922 MS.gene003490:CDS
ATCCCATACTGTATTGTTAA+GGG 0.456742 4.2:-34455259 MS.gene003490:CDS
AAGACAAAATGGAGTTCAGC+AGG 0.470262 4.2:-34455074 MS.gene003490:CDS
ATGAGGAGTACAGGAAGAAG+TGG 0.472066 4.2:-34454923 MS.gene003490:CDS
CCAAAGCAATTTGGAATTGG+AGG 0.482647 4.2:-34456605 MS.gene003490:CDS
CATGAGCAATCACGACAAGC+TGG 0.488943 4.2:+34455338 None:intergenic
TCAAGATACTTCTGAAGTAC+AGG 0.489642 4.2:-34455609 MS.gene003490:CDS
TTTGAAAAGGGCTCAGGCAG+AGG 0.490294 4.2:-34455554 MS.gene003490:CDS
AAGTGGGGTGGTGGAATCAT+GGG 0.491130 4.2:-34454906 MS.gene003490:CDS
AAGCCAGACAACTAATTCAA+TGG 0.495839 4.2:+34455306 None:intergenic
TGAGGACAAGGCTGAGAAGA+AGG 0.500213 4.2:-34455584 MS.gene003490:CDS
TTAGTGAACTGGTTCAAAGC+TGG 0.502229 4.2:+34456479 None:intergenic
GAAGTGGCCGAAGAACGTTC+AGG 0.510705 4.2:-34456546 MS.gene003490:CDS
ATGACAAGTATGAGGAGTAC+AGG 0.517239 4.2:-34454932 MS.gene003490:CDS
AATCTGGTCAAATCCCTCTT+CGG 0.518321 4.2:+34456572 None:intergenic
GAAGTACAGGCCTGAGGACA+AGG 0.533130 4.2:-34455596 MS.gene003490:CDS
ACAACAAACTTACACTTCCT+AGG 0.547646 4.2:+34455227 None:intergenic
AGGTGCATTGCCACCGAAGA+GGG 0.550648 4.2:-34456585 MS.gene003490:CDS
TGCCCTTAACAATACAGTAT+GGG 0.553243 4.2:+34455257 None:intergenic
TTTGGACGCTTCTCAAACAG+CGG 0.554899 4.2:+34456623 None:intergenic
TTGGACGCTTCTCAAACAGC+GGG 0.558308 4.2:+34456624 None:intergenic
CAAACTTACACTTCCTAGGC+GGG 0.561796 4.2:+34455231 None:intergenic
ATTTGACCAGATTCGTGAAG+TGG 0.563086 4.2:-34456562 MS.gene003490:CDS
AAATTTCAATGACAAGTATG+AGG 0.565347 4.2:-34454940 MS.gene003490:CDS
GTGAACTGGTTCAAAGCTGG+TGG 0.574137 4.2:+34456482 None:intergenic
TTCAGGTGCAGAGGAAGAAG+AGG 0.574820 4.2:-34456529 MS.gene003490:CDS
AGGGCTCAGGCAGAGGCTGA+GGG 0.575749 4.2:-34455547 MS.gene003490:CDS
ATGCCACCTTAATCGCCTCT+AGG 0.580251 4.2:+34455049 None:intergenic
ATGAGCAATCACGACAAGCT+GGG 0.581861 4.2:+34455339 None:intergenic
GTTAAGGGCAAGGCCCGCCT+AGG 0.589576 4.2:-34455244 MS.gene003490:CDS
CGAAGAACGTTCAGGTGCAG+AGG 0.592402 4.2:-34456538 MS.gene003490:CDS
CCAAGCCAAGACCAAGGCAA+AGG 0.598075 4.2:-34454874 MS.gene003490:CDS
GATTTCCATCTTCCTGCACA+AGG 0.600419 4.2:+34455279 None:intergenic
ACGCTTCTCAAACAGCGGGT+TGG 0.601848 4.2:+34456628 None:intergenic
ATACTGTATTGTTAAGGGCA+AGG 0.604440 4.2:-34455254 MS.gene003490:CDS
TGAGGTAGGTAACATGATTG+AGG 0.604638 4.2:+34455482 None:intergenic
ACAAGGCTGAGAAGAAGGAG+AGG 0.612342 4.2:-34455579 MS.gene003490:CDS
AAAGGAAAGGCTTATTGCCA+AGG 0.613232 4.2:-34454856 MS.gene003490:CDS
TGTTACCTACCTCATCGAGC+AGG 0.615302 4.2:-34455473 MS.gene003490:intron
GGCTGCCCAGAGAATGACCT+AGG 0.616298 4.2:-34454832 None:intergenic
AAGTATCTTGAACAAGCTTG+TGG 0.617064 4.2:+34455621 None:intergenic
CCAAGACCAAGGCAAAGGAA+AGG 0.622185 4.2:-34454869 MS.gene003490:CDS
GAGTACAGGAAGAAGTGGGG+TGG 0.625879 4.2:-34454918 MS.gene003490:CDS
GAGGAGTACAGGAAGAAGTG+GGG 0.627370 4.2:-34454921 MS.gene003490:CDS
CTGGTCAAATCCCTCTTCGG+TGG 0.631531 4.2:+34456575 None:intergenic
GGAGTTCAGCAGGGTCCTAG+AGG 0.633517 4.2:-34455064 MS.gene003490:CDS
GAGGTGCATTGCCACCGAAG+AGG 0.649300 4.2:-34456586 MS.gene003490:CDS
CAACTCCTAGGTCATTCTCT+GGG 0.652662 4.2:+34454827 None:intergenic
GGAAAGGCTTATTGCCAAGG+AGG 0.665686 4.2:-34454853 MS.gene003490:CDS
CAAATCCCAAGCCAAGACCA+AGG 0.672977 4.2:-34454880 MS.gene003490:CDS
ACAAACTTACACTTCCTAGG+CGG 0.677034 4.2:+34455230 None:intergenic
GAAAGACAACCTGCTCGATG+AGG 0.683651 4.2:+34455464 None:intergenic
GACAACCTGCTCGATGAGGT+AGG 0.683860 4.2:+34455468 None:intergenic
AGACAAAATGGAGTTCAGCA+GGG 0.687168 4.2:-34455073 MS.gene003490:CDS
ACTTCTGAAGTACAGGCCTG+AGG 0.703947 4.2:-34455602 MS.gene003490:CDS
GCCAGACAACTAATTCAATG+GGG 0.748421 4.2:+34455308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTATTGTAATGTT+TGG - chr4.2:34455187-34455206 MS.gene003490:intron 10.0%
!!! TTTTTGTAATATGTTAATTA+TGG - chr4.2:34455255-34455274 MS.gene003490:CDS 10.0%
!! GTAAATTGTAAAATTAATAC+AGG - chr4.2:34455277-34455296 MS.gene003490:CDS 15.0%
!! AATCAGTATATTGTTATATC+AGG + chr4.2:34455908-34455927 None:intergenic 20.0%
!! ATAAAACATCTCAGTTTAAA+TGG + chr4.2:34456640-34456659 None:intergenic 20.0%
!! ATCAGTATATTGTTATATCA+GGG + chr4.2:34455907-34455926 None:intergenic 20.0%
!! CAGTAAAATAACAAATTAGA+AGG + chr4.2:34456210-34456229 None:intergenic 20.0%
!! GTAAAATTAATACAGGATTT+CGG - chr4.2:34455284-34455303 MS.gene003490:CDS 20.0%
!! TAAATAGTAGAGAACAAAAA+TGG + chr4.2:34456607-34456626 None:intergenic 20.0%
!! TGTTAAAAATGAAGACAAAA+TGG - chr4.2:34456533-34456552 MS.gene003490:CDS 20.0%
!! TTCAGTCATAAATCATATAT+AGG + chr4.2:34456427-34456446 None:intergenic 20.0%
!!! AGTTATTTCAAAAGCTTAAA+TGG + chr4.2:34455591-34455610 None:intergenic 20.0%
!!! GTTATTTCAAAAGCTTAAAT+GGG + chr4.2:34455590-34455609 None:intergenic 20.0%
!!! TTTTATGTTGGTTTTATTTC+AGG - chr4.2:34456654-34456673 MS.gene003490:intron 20.0%
! AAATTTCAATGACAAGTATG+AGG - chr4.2:34456678-34456697 MS.gene003490:intron 25.0%
! AGTTGAAAACAAAATTAAGC+AGG - chr4.2:34455452-34455471 MS.gene003490:intron 25.0%
! ATATCAATCTACCATTTCAT+AGG + chr4.2:34455714-34455733 None:intergenic 25.0%
! ATTCTATGATTTCATTGCTT+TGG - chr4.2:34455668-34455687 MS.gene003490:intron 25.0%
! CGTTTAACAATTATTCGTTA+TGG - chr4.2:34455841-34455860 MS.gene003490:intron 25.0%
! GTTGAAAACAAAATTAAGCA+GGG - chr4.2:34455453-34455472 MS.gene003490:intron 25.0%
! TTTATGACTGAATTGAATTC+AGG - chr4.2:34456435-34456454 MS.gene003490:intron 25.0%
!! TAAACTGAGATGTTTTATGT+TGG - chr4.2:34456642-34456661 MS.gene003490:intron 25.0%
!!! GTATTTGTTTTCAAATTTGC+AGG - chr4.2:34454958-34454977 MS.gene003490:intron 25.0%
!!! TTTGTCTTCATTTTTAACAG+TGG + chr4.2:34456532-34456551 None:intergenic 25.0%
AAGCCTATTAATGTGAAGTA+TGG - chr4.2:34456113-34456132 MS.gene003490:intron 30.0%
AATCCCATACTGTATTGTTA+AGG - chr4.2:34456358-34456377 MS.gene003490:intron 30.0%
ATCCCATACTGTATTGTTAA+GGG - chr4.2:34456359-34456378 MS.gene003490:intron 30.0%
CTTATGCAATAAGCTTCAAA+TGG + chr4.2:34455485-34455504 None:intergenic 30.0%
GTTATGGTTATATTAGAGTC+TGG - chr4.2:34455857-34455876 MS.gene003490:intron 30.0%
TAATCTCTCTACACTTAAAC+AGG - chr4.2:34456470-34456489 MS.gene003490:CDS 30.0%
! AACAAAATTAAGCAGGGTTT+TGG - chr4.2:34455459-34455478 MS.gene003490:intron 30.0%
! GAGGCATTACTTTATTAGTT+TGG - chr4.2:34455879-34455898 MS.gene003490:intron 30.0%
! GTAGATAAGCTTTTTATCCA+AGG + chr4.2:34455310-34455329 None:intergenic 30.0%
! TTTGAAGCTTATTGCATAAG+TGG - chr4.2:34455485-34455504 MS.gene003490:CDS 30.0%
!!! GATCTGATTTTGATTGCTAT+AGG - chr4.2:34455209-34455228 MS.gene003490:intron 30.0%
AAAACCCTCGACAAAAATCT+AGG - chr4.2:34455160-34455179 MS.gene003490:intron 35.0%
AAATGAGATTGGAATTGACG+CGG + chr4.2:34454895-34454914 None:intergenic 35.0%
AAGCCAGACAACTAATTCAA+TGG + chr4.2:34456315-34456334 None:intergenic 35.0%
AAGTATCTTGAACAAGCTTG+TGG + chr4.2:34456000-34456019 None:intergenic 35.0%
ACAACAAACTTACACTTCCT+AGG + chr4.2:34456394-34456413 None:intergenic 35.0%
AGCCAGACAACTAATTCAAT+GGG + chr4.2:34456314-34456333 None:intergenic 35.0%
AGGCCATACTTCACATTAAT+AGG + chr4.2:34456119-34456138 None:intergenic 35.0%
ATACTGTATTGTTAAGGGCA+AGG - chr4.2:34456364-34456383 MS.gene003490:intron 35.0%
ATGGTTATATTAGAGTCTGG+AGG - chr4.2:34455860-34455879 MS.gene003490:intron 35.0%
GAAGGAAAAATCAGCAATCT+TGG + chr4.2:34456192-34456211 None:intergenic 35.0%
TCGAAAGTCGTAAATGAGAT+TGG + chr4.2:34454906-34454925 None:intergenic 35.0%
TGCCCTTAACAATACAGTAT+GGG + chr4.2:34456364-34456383 None:intergenic 35.0%
TTGCCCTTAACAATACAGTA+TGG + chr4.2:34456365-34456384 None:intergenic 35.0%
! AAACAGCAGCAGTTTTCTTA+TGG + chr4.2:34456500-34456519 None:intergenic 35.0%
! ACTGGTTTCTTCCTATGAAA+TGG - chr4.2:34455700-34455719 MS.gene003490:intron 35.0%
! GTTGCTTTCATAAGCTATCT+TGG - chr4.2:34455413-34455432 MS.gene003490:intron 35.0%
! GTTTTCAAATTTGCAGGAGA+AGG - chr4.2:34454964-34454983 MS.gene003490:intron 35.0%
! TTGCTTTGGTTTCTTTCTAC+TGG - chr4.2:34455682-34455701 MS.gene003490:intron 35.0%
!! TCAAGATACTTCTGAAGTAC+AGG - chr4.2:34456009-34456028 MS.gene003490:intron 35.0%
!!! GGAGCTTTAACACCTTTTTT+GGG + chr4.2:34454839-34454858 None:intergenic 35.0%
!!! TGGAGCTTTAACACCTTTTT+TGG + chr4.2:34454840-34454859 None:intergenic 35.0%
AAAGGAAAGGCTTATTGCCA+AGG - chr4.2:34456762-34456781 MS.gene003490:CDS 40.0%
AAGACAAAATGGAGTTCAGC+AGG - chr4.2:34456544-34456563 MS.gene003490:CDS 40.0%
AATAAGCCTTTCCTTTGCCT+TGG + chr4.2:34456758-34456777 None:intergenic 40.0%
AATCTGGTCAAATCCCTCTT+CGG + chr4.2:34455049-34455068 None:intergenic 40.0%
ACAAACTTACACTTCCTAGG+CGG + chr4.2:34456391-34456410 None:intergenic 40.0%
ACCCCATTGAATTAGTTGTC+TGG - chr4.2:34456309-34456328 MS.gene003490:intron 40.0%
AGACAAAATGGAGTTCAGCA+GGG - chr4.2:34456545-34456564 MS.gene003490:CDS 40.0%
ATTTGACCAGATTCGTGAAG+TGG - chr4.2:34455056-34455075 MS.gene003490:CDS 40.0%
CCTCCAATTCCAAATTGCTT+TGG + chr4.2:34455016-34455035 None:intergenic 40.0%
GCCAGACAACTAATTCAATG+GGG + chr4.2:34456313-34456332 None:intergenic 40.0%
TGAGGTAGGTAACATGATTG+AGG + chr4.2:34456139-34456158 None:intergenic 40.0%
TTAATACAGGATTTCGGCCT+TGG - chr4.2:34455290-34455309 MS.gene003490:CDS 40.0%
! ATGACAAGTATGAGGAGTAC+AGG - chr4.2:34456686-34456705 MS.gene003490:intron 40.0%
! CCAAAGCAATTTGGAATTGG+AGG - chr4.2:34455013-34455032 MS.gene003490:intron 40.0%
! CGTCCAAAGCAATTTGGAAT+TGG - chr4.2:34455010-34455029 MS.gene003490:intron 40.0%
! CTGACCTAGATTTTTGTCGA+GGG + chr4.2:34455167-34455186 None:intergenic 40.0%
! GCTTTAAGCTACAACGTGTA+TGG + chr4.2:34455791-34455810 None:intergenic 40.0%
! TCTGACCTAGATTTTTGTCG+AGG + chr4.2:34455168-34455187 None:intergenic 40.0%
! TTAGTGAACTGGTTCAAAGC+TGG + chr4.2:34455142-34455161 None:intergenic 40.0%
!! AGAAGGAGAGGCTTTTGAAA+AGG - chr4.2:34456051-34456070 MS.gene003490:intron 40.0%
!! GAAGGAGAGGCTTTTGAAAA+GGG - chr4.2:34456052-34456071 MS.gene003490:intron 40.0%
!! TTCTTCTTTGAAGCTGCAAC+TGG + chr4.2:34454860-34454879 None:intergenic 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG - chr4.2:34455104-34455123 MS.gene003490:CDS 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG - chr4.2:34455111-34455130 MS.gene003490:CDS 40.0%
ATGAGCAATCACGACAAGCT+GGG + chr4.2:34456282-34456301 None:intergenic 45.0%
CAAACTTACACTTCCTAGGC+GGG + chr4.2:34456390-34456409 None:intergenic 45.0%
GAATTGACGCGGTTACTTAC+AGG + chr4.2:34454884-34454903 None:intergenic 45.0%
GATTTCCATCTTCCTGCACA+AGG + chr4.2:34456342-34456361 None:intergenic 45.0%
TGCATGTGCTGCATAAATGC+TGG - chr4.2:34455643-34455662 MS.gene003490:intron 45.0%
TTTGGACGCTTCTCAAACAG+CGG + chr4.2:34454998-34455017 None:intergenic 45.0%
! ATGAGGAGTACAGGAAGAAG+TGG - chr4.2:34456695-34456714 MS.gene003490:intron 45.0%
! TGAGGAGTACAGGAAGAAGT+GGG - chr4.2:34456696-34456715 MS.gene003490:intron 45.0%
!! GAGAAGCGTCCAAAGCAATT+TGG - chr4.2:34455004-34455023 MS.gene003490:intron 45.0%
!! TGTCGAGGGTTTTAGTGAAC+TGG + chr4.2:34455153-34455172 None:intergenic 45.0%
ACAAGGCTGAGAAGAAGGAG+AGG - chr4.2:34456039-34456058 MS.gene003490:intron 50.0%
ATGCCACCTTAATCGCCTCT+AGG + chr4.2:34456572-34456591 None:intergenic 50.0%
CAAATCCCAAGCCAAGACCA+AGG - chr4.2:34456738-34456757 MS.gene003490:intron 50.0%
CATGAGCAATCACGACAAGC+TGG + chr4.2:34456283-34456302 None:intergenic 50.0%
CCAAGACCAAGGCAAAGGAA+AGG - chr4.2:34456749-34456768 MS.gene003490:intron 50.0%
CCTTTCCTTTGCCTTGGTCT+TGG + chr4.2:34456752-34456771 None:intergenic 50.0%
CTCTGCACCTGAACGTTCTT+CGG + chr4.2:34455082-34455101 None:intergenic 50.0%
GAAAGACAACCTGCTCGATG+AGG + chr4.2:34456157-34456176 None:intergenic 50.0%
GGAAAGGCTTATTGCCAAGG+AGG - chr4.2:34456765-34456784 MS.gene003490:CDS 50.0%
TGAGGACAAGGCTGAGAAGA+AGG - chr4.2:34456034-34456053 MS.gene003490:intron 50.0%
TGTTACCTACCTCATCGAGC+AGG - chr4.2:34456145-34456164 MS.gene003490:intron 50.0%
TTCAGGTGCAGAGGAAGAAG+AGG - chr4.2:34455089-34455108 MS.gene003490:CDS 50.0%
TTGGACGCTTCTCAAACAGC+GGG + chr4.2:34454997-34455016 None:intergenic 50.0%
TTTGAAAAGGGCTCAGGCAG+AGG - chr4.2:34456064-34456083 MS.gene003490:intron 50.0%
! GAGGAGTACAGGAAGAAGTG+GGG - chr4.2:34456697-34456716 MS.gene003490:intron 50.0%
! GTGAACTGGTTCAAAGCTGG+TGG + chr4.2:34455139-34455158 None:intergenic 50.0%
! TTCTTCTCAGCCTTGTCCTC+AGG + chr4.2:34456035-34456054 None:intergenic 50.0%
!! AAGTGGGGTGGTGGAATCAT+GGG - chr4.2:34456712-34456731 MS.gene003490:intron 50.0%
!! ACTTCTGAAGTACAGGCCTG+AGG - chr4.2:34456016-34456035 MS.gene003490:intron 50.0%
!! CTTGGTCTTGGCTTGGGATT+TGG + chr4.2:34456740-34456759 None:intergenic 50.0%
!! CTTTGCCTTGGTCTTGGCTT+GGG + chr4.2:34456746-34456765 None:intergenic 50.0%
!! GAGGCTTTTGAAAAGGGCTC+AGG - chr4.2:34456058-34456077 MS.gene003490:intron 50.0%
ACGCTTCTCAAACAGCGGGT+TGG + chr4.2:34454993-34455012 None:intergenic 55.0%
AGGTGCATTGCCACCGAAGA+GGG - chr4.2:34455033-34455052 MS.gene003490:intron 55.0%
CAGGGTCCTAGAGGCGATTA+AGG - chr4.2:34456563-34456582 MS.gene003490:CDS 55.0%
CCAAGCCAAGACCAAGGCAA+AGG - chr4.2:34456744-34456763 MS.gene003490:intron 55.0%
CGAAGAACGTTCAGGTGCAG+AGG - chr4.2:34455080-34455099 MS.gene003490:CDS 55.0%
CTGGTCAAATCCCTCTTCGG+TGG + chr4.2:34455046-34455065 None:intergenic 55.0%
CTTCGGCCACTTCACGAATC+TGG + chr4.2:34455065-34455084 None:intergenic 55.0%
GAACAAGCTTGTGGCTGCAG+AGG + chr4.2:34455991-34456010 None:intergenic 55.0%
GAAGTACAGGCCTGAGGACA+AGG - chr4.2:34456022-34456041 MS.gene003490:intron 55.0%
GAAGTGGCCGAAGAACGTTC+AGG - chr4.2:34455072-34455091 MS.gene003490:CDS 55.0%
GACAACCTGCTCGATGAGGT+AGG + chr4.2:34456153-34456172 None:intergenic 55.0%
GAGTACAGGAAGAAGTGGGG+TGG - chr4.2:34456700-34456719 MS.gene003490:intron 55.0%
GGTCCTAGAGGCGATTAAGG+TGG - chr4.2:34456566-34456585 MS.gene003490:CDS 55.0%
TACAGGAAGAAGTGGGGTGG+TGG - chr4.2:34456703-34456722 MS.gene003490:intron 55.0%
TCCATCTTCCTGCACAAGGC+TGG + chr4.2:34456338-34456357 None:intergenic 55.0%
! TCCAGCCTTGTGCAGGAAGA+TGG - chr4.2:34456334-34456353 MS.gene003490:intron 55.0%
!! CCTTTGCCTTGGTCTTGGCT+TGG + chr4.2:34456747-34456766 None:intergenic 55.0%
!! GAAGTGGGGTGGTGGAATCA+TGG - chr4.2:34456711-34456730 MS.gene003490:intron 55.0%
CATTCTCTGGGCAGCCTCCT+TGG + chr4.2:34456782-34456801 None:intergenic 60.0%
GAGGTGCATTGCCACCGAAG+AGG - chr4.2:34455032-34455051 MS.gene003490:intron 60.0%
GGAGTTCAGCAGGGTCCTAG+AGG - chr4.2:34456554-34456573 MS.gene003490:CDS 60.0%
GGCTGCCCAGAGAATGACCT+AGG - chr4.2:34456786-34456805 MS.gene003490:CDS 60.0%
! TCTGGCTTCCAGCCTTGTGC+AGG - chr4.2:34456327-34456346 MS.gene003490:intron 60.0%
AAGGGCTCAGGCAGAGGCTG+AGG - chr4.2:34456070-34456089 MS.gene003490:intron 65.0%
AGGGCTCAGGCAGAGGCTGA+GGG - chr4.2:34456071-34456090 MS.gene003490:intron 65.0%
GTTAAGGGCAAGGCCCGCCT+AGG - chr4.2:34456374-34456393 MS.gene003490:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 34454833 34456807 34454833 ID=MS.gene003490
chr4.2 mRNA 34454833 34456807 34454833 ID=MS.gene003490.t1;Parent=MS.gene003490
chr4.2 exon 34456757 34456807 34456757 ID=MS.gene003490.t1.exon1;Parent=MS.gene003490.t1
chr4.2 CDS 34456757 34456807 34456757 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
chr4.2 exon 34456459 34456660 34456459 ID=MS.gene003490.t1.exon2;Parent=MS.gene003490.t1
chr4.2 CDS 34456459 34456660 34456459 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
chr4.2 exon 34455474 34455643 34455474 ID=MS.gene003490.t1.exon3;Parent=MS.gene003490.t1
chr4.2 CDS 34455474 34455643 34455474 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
chr4.2 exon 34455240 34455368 34455240 ID=MS.gene003490.t1.exon4;Parent=MS.gene003490.t1
chr4.2 CDS 34455240 34455368 34455240 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
chr4.2 exon 34455056 34455148 34455056 ID=MS.gene003490.t1.exon5;Parent=MS.gene003490.t1
chr4.2 CDS 34455056 34455148 34455056 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
chr4.2 exon 34454833 34454964 34454833 ID=MS.gene003490.t1.exon6;Parent=MS.gene003490.t1
chr4.2 CDS 34454833 34454964 34454833 ID=cds.MS.gene003490.t1;Parent=MS.gene003490.t1
Gene Sequence

>MS.gene003490

GCTCCCAAAAAAGGTGTTAAAGCTCCAGTTGCAGCTTCAAAGAAGAAACCTGTAAGTAACCGCGTCAATTCCAATCTCATTTACGACTTTCGATTCATTTTTTGTATTGTTTTGAAAGTGAATTTGTATTTGTTTTCAAATTTGCAGGAGAAGGTTACCAACCCGCTGTTTGAGAAGCGTCCAAAGCAATTTGGAATTGGAGGTGCATTGCCACCGAAGAGGGATTTGACCAGATTCGTGAAGTGGCCGAAGAACGTTCAGGTGCAGAGGAAGAAGAGGATTTTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACTAAAACCCTCGACAAAAATCTAGGTCAGAAATAAATTATTGTAATGTTTGGATCTGATTTTGATTGCTATAGGAGTTATTTACGTGTTATTTGCAATTTTTGTAATATGTTAATTATGGTAAATTGTAAAATTAATACAGGATTTCGGCCTTGGATAAAAAGCTTATCTACAGCTAATAGCATAAGTGCTTATTTGTATAAGCTATTTCTATAGCAAAAGATAAAATAAAGTTCAATTATTTTTGTATATATAAGTTGCTTTCATAAGCTATCTTGGTGCTCTCAATGAAATAAGTTGAAAACAAAATTAAGCAGGGTTTTGGCCATTTGAAGCTTATTGCATAAGTGGTTATTATGATTATCAGCTATTTGTATAAACTAAAGTTAAGTTGTTTTTGTATAAGCTATTAGCTGTTTTGATAACTTCTCCCATTTAAGCTTTTGAAATAACTTATCAATGCTCATGAAATTAGCTTGATAACTTTGCATGTGCTGCATAAATGCTGGTAATTCTATGATTTCATTGCTTTGGTTTCTTTCTACTGGTTTCTTCCTATGAAATGGTAGATTGATATGCTGAGTATGCTGTTACTTTGACAGTTTTTGTTATCTCAAACGTTATTTTACTGCCATACACGTTGTAGCTTAAAGCACTGCTAAGCATTTTACTTGTTTGTTTTGACGTTTAACAATTATTCGTTATGGTTATATTAGAGTCTGGAGGCATTACTTTATTAGTTTGGTTCCCTGATATAACAATATACTGATTCTTTGTTCATTTTTGTTGCTTTATATTTAATGTGATTTTTTATCATCTTTGATTGTCGTACCTCTGCAGCCACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGACAAGGCTGAGAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAGGGCAAAACAGTTGAAACTAAGAAGCCTATTAATGTGAAGTATGGCCTCAATCATGTTACCTACCTCATCGAGCAGGTTGTCTTTCTGTCATGTTACTCCAAGATTGCTGATTTTTCCTTCTAATTTGTTATTTTACTGTGATATTGATGAATGACTGATTAAGCTTTATTTTCTTTACAGAATAAAGCCCAGCTTGTCGTGATTGCTCATGATGTCGACCCCATTGAATTAGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATCCCATACTGTATTGTTAAGGGCAAGGCCCGCCTAGGAAGTGTAAGTTTGTTGTGATTTGAATACCTATATATGATTTATGACTGAATTGAATTCAGGTAATGACTAATTTAATCTCTCTACACTTAAACAGGTTGTCCATAAGAAAACTGCTGCTGTTTTGTGCTTGACCACTGTTAAAAATGAAGACAAAATGGAGTTCAGCAGGGTCCTAGAGGCGATTAAGGTGGCATATAATTTTATTTCCATTTTTGTTCTCTACTATTTATATACTCTTGCCATTTAAACTGAGATGTTTTATGTTGGTTTTATTTCAGGCAAATTTCAATGACAAGTATGAGGAGTACAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAAGGCAAAGGAAAGGCTTATTGCCAAGGAGGCTGCCCAGAGAATGACCTAG
Protein sequence

>MS.gene003490.t1

APKKGVKAPVAASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQVQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSVVHKKTAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT