Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86675.t1 | XP_013447916.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 2.00E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86675.t1 | P35685 | 88.5 | 260 | 28 | 1 | 1 | 260 | 1 | 258 | 1.6e-124 | 446.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86675.t1 | A0A072TYM4 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050791 | MS.gene86675 | 0.819331 | 1.23E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86675.t1 | MTR_7g027235 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 524 |
| MS.gene86675.t1 | MTR_4g074260 | 93.077 | 260 | 17 | 1 | 1 | 260 | 1 | 259 | 2.65e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86675.t1 | AT3G62870 | 82.308 | 260 | 42 | 1 | 1 | 260 | 1 | 256 | 2.40e-160 | 445 |
| MS.gene86675.t1 | AT2G47610 | 86.008 | 243 | 34 | 0 | 18 | 260 | 15 | 257 | 7.28e-159 | 441 |
Find 67 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGAATCTGCACTGTTT+TGG | 0.169741 | 7.4:+74193179 | None:intergenic |
| CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7.4:+74190946 | None:intergenic |
| GAACTACCTTGATGGCTTCT+AGG | 0.250413 | 7.4:+74191150 | None:intergenic |
| GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7.4:-74190996 | MS.gene86675:CDS |
| GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7.4:-74193255 | MS.gene86675:CDS |
| AGACCGTATTTCACATTAAT+AGG | 0.281467 | 7.4:+74191590 | None:intergenic |
| AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7.4:+74193213 | None:intergenic |
| CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7.4:-74191186 | MS.gene86675:CDS |
| AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7.4:-74193254 | MS.gene86675:CDS |
| AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7.4:-74190995 | MS.gene86675:CDS |
| TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7.4:-74191338 | MS.gene86675:CDS |
| CATTCTTTGAGCAGCTTCCT+TGG | 0.361728 | 7.4:+74190928 | None:intergenic |
| TCAAGTTTGAACTACCTTGA+TGG | 0.365851 | 7.4:+74191142 | None:intergenic |
| TTCTTCTTCGCTGCTGCAAC+TGG | 0.368855 | 7.4:+74193309 | None:intergenic |
| AGCCAGACAACAAGCTCAAT+AGG | 0.401792 | 7.4:+74191400 | None:intergenic |
| TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7.4:+74193109 | None:intergenic |
| GTCAAGGGCAAAGCACGTTT+GGG | 0.409984 | 7.4:-74191337 | MS.gene86675:CDS |
| ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7.4:-74191021 | MS.gene86675:CDS |
| TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7.4:-74191377 | MS.gene86675:CDS |
| ACCCTATTGAGCTTGTTGTC+TGG | 0.422913 | 7.4:-74191402 | MS.gene86675:CDS |
| ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7.4:-74193203 | MS.gene86675:CDS |
| AGAAGGAACGTCTCCTGAAA+AGG | 0.442454 | 7.4:-74191655 | MS.gene86675:CDS |
| CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7.4:+74193246 | None:intergenic |
| TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7.4:+74191376 | None:intergenic |
| TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7.4:-74191029 | MS.gene86675:CDS |
| CAGTACCTGCTCAATAAGAT+AGG | 0.464452 | 7.4:+74191556 | None:intergenic |
| AAGCCTATTAATGTGAAATA+CGG | 0.473152 | 7.4:-74191593 | MS.gene86675:CDS |
| TGTCCTCAGGTCTGTACTTG+AGG | 0.476943 | 7.4:+74191687 | None:intergenic |
| AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7.4:-74191004 | MS.gene86675:CDS |
| TTTGCCCTCAGATTCAGCTT+GGG | 0.478574 | 7.4:+74191631 | None:intergenic |
| GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7.4:+74193145 | None:intergenic |
| ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7.4:+74191702 | None:intergenic |
| GCCAGACAACAAGCTCAATA+GGG | 0.492274 | 7.4:+74191401 | None:intergenic |
| CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7.4:+74193216 | None:intergenic |
| CAGAATCCTAGAAGCCATCA+AGG | 0.506009 | 7.4:-74191156 | MS.gene86675:intron |
| GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7.4:-74193148 | MS.gene86675:CDS |
| TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7.4:-74191011 | MS.gene86675:CDS |
| GAAGGAACGTCTCCTGAAAA+GGG | 0.516781 | 7.4:-74191654 | MS.gene86675:CDS |
| TGCAGATTCAGAGGAAGAAG+AGG | 0.520421 | 7.4:-74193170 | MS.gene86675:CDS |
| CGTTACCTATCTTATTGAGC+AGG | 0.521902 | 7.4:-74191561 | MS.gene86675:intron |
| AATAGGCTTCTTTGTCTCGA+CGG | 0.529456 | 7.4:+74191607 | None:intergenic |
| TGAGGACAAAGCTGAAAAGA+AGG | 0.536121 | 7.4:-74191672 | MS.gene86675:CDS |
| GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7.4:+74191205 | None:intergenic |
| CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7.4:-74193215 | MS.gene86675:CDS |
| GAAGAATACAGCACTGAAAG+TGG | 0.550599 | 7.4:-74193292 | MS.gene86675:CDS |
| TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7.4:-74191012 | MS.gene86675:CDS |
| TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7.4:+74191348 | None:intergenic |
| AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7.4:-74191353 | MS.gene86675:CDS |
| CCAAAACAGTGCAGATTCAG+AGG | 0.573781 | 7.4:-74193179 | MS.gene86675:CDS |
| AAGGGCCCAAGCTGAATCTG+AGG | 0.576080 | 7.4:-74191636 | MS.gene86675:CDS |
| GCTCAATAGGGTCGACATCG+TGG | 0.579407 | 7.4:+74191413 | None:intergenic |
| CTCAATAGGGTCGACATCGT+GGG | 0.587513 | 7.4:+74191414 | None:intergenic |
| TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7.4:+74191349 | None:intergenic |
| CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7.4:-74193246 | MS.gene86675:CDS |
| GTGAACTGGTTAAGAGCTGG+TGG | 0.603558 | 7.4:+74193123 | None:intergenic |
| TTAGTGAACTGGTTAAGAGC+TGG | 0.606450 | 7.4:+74193120 | None:intergenic |
| AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7.4:-74193249 | MS.gene86675:CDS |
| ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7.4:-74191352 | MS.gene86675:CDS |
| AGGGCCCAAGCTGAATCTGA+GGG | 0.623143 | 7.4:-74191635 | MS.gene86675:CDS |
| CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7.4:-74190945 | MS.gene86675:CDS |
| AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7.4:-74193155 | MS.gene86675:CDS |
| GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7.4:-74191007 | MS.gene86675:CDS |
| GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7.4:-74191010 | MS.gene86675:CDS |
| CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7.4:-74190969 | MS.gene86675:CDS |
| TTACAGGCACCAAAGCGCGG+TGG | 0.676428 | 7.4:-74193339 | MS.gene86675:intron |
| GCTCCTCAAGTACAGACCTG+AGG | 0.716951 | 7.4:-74191690 | MS.gene86675:CDS |
| GCTCAATAAGATAGGTAACG+TGG | 0.726131 | 7.4:+74191564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTGATTTGATTTTAAAA+TGG | - | chr7.4:74191525-74191544 | MS.gene86675:intron | 10.0% |
| !! | AATCAAAATTTGTGTTTAAT+TGG | - | chr7.4:74191373-74191392 | MS.gene86675:CDS | 15.0% |
| !! | ATTGTTGAAATCATTATTAT+TGG | - | chr7.4:74192560-74192579 | MS.gene86675:intron | 15.0% |
| !!! | GGTTATTATTGTTTAAAATA+AGG | - | chr7.4:74191856-74191875 | MS.gene86675:intron | 15.0% |
| !!! | TTTTAGATTTGGTTTTAATT+TGG | - | chr7.4:74191321-74191340 | MS.gene86675:intron | 15.0% |
| !!! | TTTTAGATTTGGTTTTATTT+TGG | - | chr7.4:74191557-74191576 | MS.gene86675:intron | 15.0% |
| !!! | TTTTTATGTTGTTGATTAAT+TGG | - | chr7.4:74191647-74191666 | MS.gene86675:CDS | 15.0% |
| !! | TAGCTCATTTGATTATAAAA+TGG | - | chr7.4:74191289-74191308 | MS.gene86675:intron | 20.0% |
| !! | TTTATGTGTAATGCTTTAAT+GGG | - | chr7.4:74191346-74191365 | MS.gene86675:CDS | 20.0% |
| !!! | ATTGATTTGAATTTGATGAA+AGG | - | chr7.4:74192001-74192020 | MS.gene86675:intron | 20.0% |
| !!! | GATGTTAGTTTAAATTGTTT+TGG | - | chr7.4:74192357-74192376 | MS.gene86675:intron | 20.0% |
| !!! | GGTTAATTTTATTGAACTAT+CGG | + | chr7.4:74193267-74193286 | None:intergenic | 20.0% |
| !!! | GTTTAGTGTTGTTAAAATTT+AGG | - | chr7.4:74192072-74192091 | MS.gene86675:intron | 20.0% |
| !!! | TTGATTTGAATTTGATGAAA+GGG | - | chr7.4:74192002-74192021 | MS.gene86675:intron | 20.0% |
| !!! | TTTTTTACCTTCTATTTTTC+AGG | - | chr7.4:74193298-74193317 | MS.gene86675:CDS | 20.0% |
| ! | AAGCCTATTAATGTGAAATA+CGG | - | chr7.4:74192758-74192777 | MS.gene86675:intron | 25.0% |
| ! | CGTATATTTAATCTATTGCT+TGG | - | chr7.4:74192291-74192310 | MS.gene86675:intron | 25.0% |
| ! | CTTTATGTGTAATGCTTTAA+TGG | - | chr7.4:74191581-74191600 | MS.gene86675:CDS | 25.0% |
| ! | GATTTAGTGTTAATGTGAAA+TGG | - | chr7.4:74192050-74192069 | MS.gene86675:intron | 25.0% |
| ! | GTCACAAATTATAAATTCAC+AGG | + | chr7.4:74193078-74193097 | None:intergenic | 25.0% |
| ! | GTTTATGTGTAATGCTTTAA+TGG | - | chr7.4:74191345-74191364 | MS.gene86675:CDS | 25.0% |
| ! | TAACTTTAACGACAAATTTG+AGG | - | chr7.4:74193322-74193341 | MS.gene86675:CDS | 25.0% |
| ! | TACTTGTTCATATAACCAAA+AGG | + | chr7.4:74192823-74192842 | None:intergenic | 25.0% |
| ! | TGTTGTTGTCTTATAAGATA+AGG | - | chr7.4:74192210-74192229 | MS.gene86675:intron | 25.0% |
| !! | GCGATTATGTTAATTTTTAC+AGG | - | chr7.4:74190996-74191015 | MS.gene86675:CDS | 25.0% |
| !! | GTTGTTGTTGTAGATTAATT+AGG | - | chr7.4:74191835-74191854 | MS.gene86675:intron | 25.0% |
| !! | TTATGTTGTTGCTGATTAAT+TGG | - | chr7.4:74191414-74191433 | MS.gene86675:CDS | 25.0% |
| !! | TTGTGAAATCTTTTGATGTT+TGG | - | chr7.4:74191686-74191705 | MS.gene86675:CDS | 25.0% |
| !!! | CTGATTAATTGGTTTTAGTT+TGG | - | chr7.4:74191425-74191444 | MS.gene86675:CDS | 25.0% |
| !!! | GTTTTAGTTTGGTGTTTTTT+GGG | - | chr7.4:74191436-74191455 | MS.gene86675:CDS | 25.0% |
| !!! | TTGTGAAATGTTTTGATGTT+TGG | - | chr7.4:74191787-74191806 | MS.gene86675:intron | 25.0% |
| !!! | TTTCTTTGTTTTCTTTGTTG+TGG | - | chr7.4:74192157-74192176 | MS.gene86675:intron | 25.0% |
| AAGACACTCGATAAAAATCT+CGG | - | chr7.4:74191252-74191271 | MS.gene86675:intron | 30.0% | |
| AATGATTGAGTGCTTGAAAA+TGG | - | chr7.4:74191933-74191952 | MS.gene86675:intron | 30.0% | |
| AATGTGATAGATTGGTGTAA+TGG | - | chr7.4:74192320-74192339 | MS.gene86675:intron | 30.0% | |
| AGACCGTATTTCACATTAAT+AGG | + | chr7.4:74192764-74192783 | None:intergenic | 30.0% | |
| AGGTAAAAAACGAACAGAAA+AGG | + | chr7.4:74193288-74193307 | None:intergenic | 30.0% | |
| ATAAATATGATGTAGCCTGT+AGG | + | chr7.4:74191752-74191771 | None:intergenic | 30.0% | |
| ATGTGATAGATTGGTGTAAT+GGG | - | chr7.4:74192321-74192340 | MS.gene86675:intron | 30.0% | |
| ATTCACAGGTGAAAATTCTA+TGG | + | chr7.4:74193064-74193083 | None:intergenic | 30.0% | |
| ATTTGACAAGGTTTGTGAAA+TGG | - | chr7.4:74191148-74191167 | MS.gene86675:intron | 30.0% | |
| GGAAATAGAATGTGATAGAT+TGG | - | chr7.4:74192312-74192331 | MS.gene86675:intron | 30.0% | |
| TTCTTACTAACAGTTACTTG+TGG | - | chr7.4:74192880-74192899 | MS.gene86675:intron | 30.0% | |
| ! | AAGTTAGCCTGAAAAATAGA+AGG | + | chr7.4:74193308-74193327 | None:intergenic | 30.0% |
| ! | CATTTTGTCTTCATTCTTGA+CGG | + | chr7.4:74193167-74193186 | None:intergenic | 30.0% |
| ! | GGTGATTGTGATTTTAGATT+TGG | - | chr7.4:74191546-74191565 | MS.gene86675:intron | 30.0% |
| !!! | GCGTTTTAGAATAAGCTATA+AGG | + | chr7.4:74190978-74190997 | None:intergenic | 30.0% |
| !!! | GGTTTTAGTTTGGTGTTTTT+TGG | - | chr7.4:74191435-74191454 | MS.gene86675:CDS | 30.0% |
| !!! | GTCGTTTTTTAAGATACTGT+TGG | - | chr7.4:74192126-74192145 | MS.gene86675:intron | 30.0% |
| !!! | TAAATTGTTTTGGAACATGC+TGG | - | chr7.4:74192367-74192386 | MS.gene86675:intron | 30.0% |
| !!! | TTGCTGTATTGTTTTGACTA+TGG | - | chr7.4:74192458-74192477 | MS.gene86675:intron | 30.0% |
| AACCTTGTCAAATCTCTCTT+TGG | + | chr7.4:74191141-74191160 | None:intergenic | 35.0% | |
| ACGACAAATTTGAGGAAAAC+AGG | - | chr7.4:74193330-74193349 | MS.gene86675:CDS | 35.0% | |
| AGTATCTGTACTCTCATACT+CGG | - | chr7.4:74192839-74192858 | MS.gene86675:intron | 35.0% | |
| CAAAACATTTCACAACAGCA+GGG | + | chr7.4:74191782-74191801 | None:intergenic | 35.0% | |
| CAAATCTCAAGCGAAAACAA+AGG | - | chr7.4:74193382-74193401 | MS.gene86675:intron | 35.0% | |
| CGTCAAGAATGAAGACAAAA+TGG | - | chr7.4:74193165-74193184 | MS.gene86675:CDS | 35.0% | |
| GAATATCTCGTTTGTGATGT+TGG | - | chr7.4:74192420-74192439 | MS.gene86675:intron | 35.0% | |
| TCAAAACATTTCACAACAGC+AGG | + | chr7.4:74191783-74191802 | None:intergenic | 35.0% | |
| TCAAGTTTGAACTACCTTGA+TGG | + | chr7.4:74193212-74193231 | None:intergenic | 35.0% | |
| ! | GGTGATTGCGATTTTAGATT+TGG | - | chr7.4:74191310-74191329 | MS.gene86675:intron | 35.0% |
| !!! | CTTTGTTTTCGCTTGAGATT+TGG | + | chr7.4:74193384-74193403 | None:intergenic | 35.0% |
| !!! | GTTTTGACTATGGCTATTGA+AGG | - | chr7.4:74192468-74192487 | MS.gene86675:intron | 35.0% |
| !!! | TTGGGAAGTGTTTTGATGTT+TGG | - | chr7.4:74191454-74191473 | MS.gene86675:intron | 35.0% |
| AATAGGCTTCTTTGTCTCGA+CGG | + | chr7.4:74192747-74192766 | None:intergenic | 40.0% | |
| AATTCCCTACTGCATTGTCA+AGG | - | chr7.4:74192998-74193017 | MS.gene86675:intron | 40.0% | |
| AGAAGAGGCCAAAGCAATTT+GGG | - | chr7.4:74191097-74191116 | MS.gene86675:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+GGG | + | chr7.4:74190932-74190951 | None:intergenic | 40.0% | |
| ATGGTACGTGATAGGTTTAG+TGG | - | chr7.4:74191952-74191971 | MS.gene86675:intron | 40.0% | |
| ATTCCCTACTGCATTGTCAA+GGG | - | chr7.4:74192999-74193018 | MS.gene86675:intron | 40.0% | |
| CAAAGAAAGACTCATTGCCA+AGG | - | chr7.4:74193406-74193425 | MS.gene86675:intron | 40.0% | |
| CACCAAAGAGAGATTTGACA+AGG | - | chr7.4:74191136-74191155 | MS.gene86675:intron | 40.0% | |
| CAGTACCTGCTCAATAAGAT+AGG | + | chr7.4:74192798-74192817 | None:intergenic | 40.0% | |
| CGTTACCTATCTTATTGAGC+AGG | - | chr7.4:74192790-74192809 | MS.gene86675:intron | 40.0% | |
| CTTGGCAATGAGTCTTTCTT+TGG | + | chr7.4:74193408-74193427 | None:intergenic | 40.0% | |
| CTTGTCAAATCTCTCTTTGG+TGG | + | chr7.4:74191138-74191157 | None:intergenic | 40.0% | |
| GCTCAATAAGATAGGTAACG+TGG | + | chr7.4:74192790-74192809 | None:intergenic | 40.0% | |
| GCTTGAAAATGGTACGTGAT+AGG | - | chr7.4:74191944-74191963 | MS.gene86675:intron | 40.0% | |
| GGAGTAGTTTGAGAGATGTT+AGG | - | chr7.4:74191974-74191993 | MS.gene86675:intron | 40.0% | |
| TATCGAGTGTCTTAGTGAAC+TGG | + | chr7.4:74191245-74191264 | None:intergenic | 40.0% | |
| TGAGGAAAACAGGAAGAAGT+GGG | - | chr7.4:74193340-74193359 | MS.gene86675:intron | 40.0% | |
| TGAGGACAAAGCTGAAAAGA+AGG | - | chr7.4:74192679-74192698 | MS.gene86675:intron | 40.0% | |
| TGGCTATTGAAGGTTCTGTA+TGG | - | chr7.4:74192478-74192497 | MS.gene86675:intron | 40.0% | |
| TGGTACGTGATAGGTTTAGT+GGG | - | chr7.4:74191953-74191972 | MS.gene86675:intron | 40.0% | |
| TTAGTGAACTGGTTAAGAGC+TGG | + | chr7.4:74191234-74191253 | None:intergenic | 40.0% | |
| TTGAGGAAAACAGGAAGAAG+TGG | - | chr7.4:74193339-74193358 | MS.gene86675:intron | 40.0% | |
| TTGGCCTCTTCTCAAAAAGT+GGG | + | chr7.4:74191089-74191108 | None:intergenic | 40.0% | |
| TTTGGCCTCTTCTCAAAAAG+TGG | + | chr7.4:74191090-74191109 | None:intergenic | 40.0% | |
| ! | CTCTGAATCTGCACTGTTTT+GGG | + | chr7.4:74191174-74191193 | None:intergenic | 40.0% |
| ! | GAAGAATACAGCACTGAAAG+TGG | - | chr7.4:74191059-74191078 | MS.gene86675:intron | 40.0% |
| ! | TGAAGGTTCTGTATGGACTA+TGG | - | chr7.4:74192485-74192504 | MS.gene86675:intron | 40.0% |
| ! | TGATAGATTGGTGTAATGGG+AGG | - | chr7.4:74192324-74192343 | MS.gene86675:intron | 40.0% |
| !! | ACTTGAGGAGCATCTTGAAA+AGG | + | chr7.4:74192652-74192671 | None:intergenic | 40.0% |
| !! | TTCTTTTCAGCTTTGTCCTC+AGG | + | chr7.4:74192680-74192699 | None:intergenic | 40.0% |
| !!! | CTTGTGGCTTTTTCAGAACA+AGG | - | chr7.4:74192896-74192915 | MS.gene86675:intron | 40.0% |
| !!! | TGAACCCACTTTTTGAGAAG+AGG | - | chr7.4:74191082-74191101 | MS.gene86675:intron | 40.0% |
| AGAAGAGGATCCTTAAGCAG+AGG | - | chr7.4:74191196-74191215 | MS.gene86675:CDS | 45.0% | |
| AGAAGGAACGTCTCCTGAAA+AGG | - | chr7.4:74192696-74192715 | MS.gene86675:intron | 45.0% | |
| AGCCAGACAACAAGCTCAAT+AGG | + | chr7.4:74192954-74192973 | None:intergenic | 45.0% | |
| CAGAATCCTAGAAGCCATCA+AGG | - | chr7.4:74193195-74193214 | MS.gene86675:CDS | 45.0% | |
| CAGAGAGAGAGAGAGAGATT+AGG | + | chr7.4:74190933-74190952 | None:intergenic | 45.0% | |
| CATTCTTTGAGCAGCTTCCT+TGG | + | chr7.4:74193426-74193445 | None:intergenic | 45.0% | |
| CCAAAACAGTGCAGATTCAG+AGG | - | chr7.4:74191172-74191191 | MS.gene86675:CDS | 45.0% | |
| CTAAGAACAGCAAGTCCTAC+AGG | - | chr7.4:74191734-74191753 | MS.gene86675:intron | 45.0% | |
| GAACCTTCAACCTCTGCTTA+AGG | + | chr7.4:74191209-74191228 | None:intergenic | 45.0% | |
| GAAGGAACGTCTCCTGAAAA+GGG | - | chr7.4:74192697-74192716 | MS.gene86675:intron | 45.0% | |
| GACGGTTGTCAAGCACAAAA+CGG | + | chr7.4:74193149-74193168 | None:intergenic | 45.0% | |
| GAGAAGAGGCCAAAGCAATT+TGG | - | chr7.4:74191096-74191115 | MS.gene86675:intron | 45.0% | |
| GAGGAAAACAGGAAGAAGTG+GGG | - | chr7.4:74193341-74193360 | MS.gene86675:intron | 45.0% | |
| GATCCTTAAGCAGAGGTTGA+AGG | - | chr7.4:74191203-74191222 | MS.gene86675:CDS | 45.0% | |
| GCCAGACAACAAGCTCAATA+GGG | + | chr7.4:74192953-74192972 | None:intergenic | 45.0% | |
| TCCATCTTTCTGCACAAAGC+TGG | + | chr7.4:74192978-74192997 | None:intergenic | 45.0% | |
| TGCAGATTCAGAGGAAGAAG+AGG | - | chr7.4:74191181-74191200 | MS.gene86675:CDS | 45.0% | |
| TTGCCCTTGACAATGCAGTA+GGG | + | chr7.4:74193005-74193024 | None:intergenic | 45.0% | |
| TTTGCCCTCAGATTCAGCTT+GGG | + | chr7.4:74192723-74192742 | None:intergenic | 45.0% | |
| TTTGCCCTTGACAATGCAGT+AGG | + | chr7.4:74193006-74193025 | None:intergenic | 45.0% | |
| ! | AAGTGGGGTGGTGGTATTAT+GGG | - | chr7.4:74193356-74193375 | MS.gene86675:intron | 45.0% |
| ! | AGGCCAAAGCAATTTGGGAT+CGG | - | chr7.4:74191102-74191121 | MS.gene86675:intron | 45.0% |
| ! | CCTCTGAATCTGCACTGTTT+TGG | + | chr7.4:74191175-74191194 | None:intergenic | 45.0% |
| ! | GAACTACCTTGATGGCTTCT+AGG | + | chr7.4:74193204-74193223 | None:intergenic | 45.0% |
| ! | TCCAGCTTTGTGCAGAAAGA+TGG | - | chr7.4:74192974-74192993 | MS.gene86675:intron | 45.0% |
| ! | TTTTCAGAACAAGGCACAGC+TGG | - | chr7.4:74192905-74192924 | MS.gene86675:intron | 45.0% |
| ! | TTTTGCCCTCAGATTCAGCT+TGG | + | chr7.4:74192724-74192743 | None:intergenic | 45.0% |
| ! | TTTTTACAGGCACCAAAGCG+CGG | - | chr7.4:74191009-74191028 | MS.gene86675:CDS | 45.0% |
| !! | ACCCTATTGAGCTTGTTGTC+TGG | - | chr7.4:74192949-74192968 | MS.gene86675:intron | 45.0% |
| CCACCGATCCCAAATTGCTT+TGG | + | chr7.4:74191108-74191127 | None:intergenic | 50.0% | |
| CTCAATAGGGTCGACATCGT+GGG | + | chr7.4:74192940-74192959 | None:intergenic | 50.0% | |
| GAAAACAGGAAGAAGTGGGG+TGG | - | chr7.4:74193344-74193363 | MS.gene86675:intron | 50.0% | |
| GTCAAGGGCAAAGCACGTTT+GGG | - | chr7.4:74193014-74193033 | MS.gene86675:intron | 50.0% | |
| GTGAACTGGTTAAGAGCTGG+TGG | + | chr7.4:74191231-74191250 | None:intergenic | 50.0% | |
| TGTCAAGGGCAAAGCACGTT+TGG | - | chr7.4:74193013-74193032 | MS.gene86675:intron | 50.0% | |
| TGTCCTCAGGTCTGTACTTG+AGG | + | chr7.4:74192667-74192686 | None:intergenic | 50.0% | |
| TTCTTCTTCGCTGCTGCAAC+TGG | + | chr7.4:74191045-74191064 | None:intergenic | 50.0% | |
| ! | ATTCAGCTTGGGCCCTTTTC+AGG | + | chr7.4:74192712-74192731 | None:intergenic | 50.0% |
| ! | CCAAAGCAATTTGGGATCGG+TGG | - | chr7.4:74191105-74191124 | MS.gene86675:intron | 50.0% |
| ! | GAAGTGGGGTGGTGGTATTA+TGG | - | chr7.4:74193355-74193374 | MS.gene86675:intron | 50.0% |
| AACAGGAAGAAGTGGGGTGG+TGG | - | chr7.4:74193347-74193366 | MS.gene86675:intron | 55.0% | |
| AAGGGCCCAAGCTGAATCTG+AGG | - | chr7.4:74192715-74192734 | MS.gene86675:intron | 55.0% | |
| AGGGCCCAAGCTGAATCTGA+GGG | - | chr7.4:74192716-74192735 | MS.gene86675:intron | 55.0% | |
| GCTCAATAGGGTCGACATCG+TGG | + | chr7.4:74192941-74192960 | None:intergenic | 55.0% | |
| GCTCCTCAAGTACAGACCTG+AGG | - | chr7.4:74192661-74192680 | MS.gene86675:intron | 55.0% | |
| !! | TGAGCAGGTACTGCGCCTTT+TGG | - | chr7.4:74192805-74192824 | MS.gene86675:intron | 55.0% |
| TTACAGGCACCAAAGCGCGG+TGG | - | chr7.4:74191012-74191031 | MS.gene86675:CDS | 60.0% | |
| ! | GGTGCTTTTCCACCGCGCTT+TGG | + | chr7.4:74191024-74191043 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 74190922 | 74193451 | 74190922 | ID=MS.gene86675 |
| chr7.4 | mRNA | 74190922 | 74193451 | 74190922 | ID=MS.gene86675.t1;Parent=MS.gene86675 |
| chr7.4 | exon | 74193449 | 74193451 | 74193449 | ID=MS.gene86675.t1.exon1;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74193449 | 74193451 | 74193449 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| chr7.4 | exon | 74193100 | 74193355 | 74193100 | ID=MS.gene86675.t1.exon2;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74193100 | 74193355 | 74193100 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| chr7.4 | exon | 74191562 | 74191731 | 74191562 | ID=MS.gene86675.t1.exon3;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74191562 | 74191731 | 74191562 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| chr7.4 | exon | 74191333 | 74191461 | 74191333 | ID=MS.gene86675.t1.exon4;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74191333 | 74191461 | 74191333 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| chr7.4 | exon | 74191157 | 74191249 | 74191157 | ID=MS.gene86675.t1.exon5;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74191157 | 74191249 | 74191157 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| chr7.4 | exon | 74190922 | 74191053 | 74190922 | ID=MS.gene86675.t1.exon6;Parent=MS.gene86675.t1 |
| chr7.4 | CDS | 74190922 | 74191053 | 74190922 | ID=cds.MS.gene86675.t1;Parent=MS.gene86675.t1 |
| Gene Sequence |
| Protein sequence |
