Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001917.t1 | XP_013447916.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 2.00E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001917.t1 | P35685 | 88.5 | 260 | 28 | 1 | 1 | 260 | 1 | 258 | 1.6e-124 | 446.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001917.t1 | A0A072TYM4 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001917.t1 | MTR_7g027235 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 524 |
| MS.gene001917.t1 | MTR_4g074260 | 93.077 | 260 | 17 | 1 | 1 | 260 | 1 | 259 | 2.65e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001917.t1 | AT3G62870 | 82.308 | 260 | 42 | 1 | 1 | 260 | 1 | 256 | 2.40e-160 | 445 |
| MS.gene001917.t1 | AT2G47610 | 86.008 | 243 | 34 | 0 | 18 | 260 | 15 | 257 | 7.28e-159 | 441 |
Find 66 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGAATCTGCACTGTTT+TGG | 0.169741 | 7.3:+72756195 | None:intergenic |
| CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7.3:+72753965 | None:intergenic |
| AGTCCGTATTTCACATTAAT+AGG | 0.241224 | 7.3:+72754609 | None:intergenic |
| GAACTACCTTGATGGCTTCT+AGG | 0.250413 | 7.3:+72754169 | None:intergenic |
| GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7.3:-72754015 | MS.gene001917:CDS |
| GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7.3:-72756271 | MS.gene001917:CDS |
| AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7.3:+72756229 | None:intergenic |
| CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7.3:-72754205 | MS.gene001917:CDS |
| AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7.3:-72756270 | MS.gene001917:CDS |
| AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7.3:-72754014 | MS.gene001917:CDS |
| TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7.3:-72754357 | MS.gene001917:CDS |
| CATTCTTTGAGCAGCTTCCT+TGG | 0.361728 | 7.3:+72753947 | None:intergenic |
| TCAAGTTTGAACTACCTTGA+TGG | 0.365851 | 7.3:+72754161 | None:intergenic |
| TTCTTCTTAGCAGCTGCAAC+TGG | 0.396812 | 7.3:+72756325 | None:intergenic |
| AGCCAGACAACAAGCTCAAT+AGG | 0.401792 | 7.3:+72754419 | None:intergenic |
| TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7.3:+72756125 | None:intergenic |
| GTCAAGGGCAAAGCACGTTT+GGG | 0.409984 | 7.3:-72754356 | MS.gene001917:CDS |
| ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7.3:-72754040 | MS.gene001917:CDS |
| TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7.3:-72754396 | MS.gene001917:CDS |
| ACCCTATTGAGCTTGTTGTC+TGG | 0.422913 | 7.3:-72754421 | MS.gene001917:CDS |
| TTTGCCCTCAGATTCGGCTT+GGG | 0.426690 | 7.3:+72754650 | None:intergenic |
| ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7.3:-72756219 | MS.gene001917:CDS |
| CAGTACCTGCTCAATAAGAT+AGG | 0.434688 | 7.3:+72754575 | None:intergenic |
| AGAAGGAACGTCTCCTGAAA+AGG | 0.442454 | 7.3:-72754674 | MS.gene001917:CDS |
| CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7.3:+72756262 | None:intergenic |
| TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7.3:+72754395 | None:intergenic |
| TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7.3:-72754048 | MS.gene001917:CDS |
| TGTCCTCAGGCCTGTACTTG+AGG | 0.467651 | 7.3:+72754706 | None:intergenic |
| AAGCCTATTAATGTGAAATA+CGG | 0.476721 | 7.3:-72754612 | MS.gene001917:CDS |
| AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7.3:-72754023 | MS.gene001917:CDS |
| GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7.3:+72756161 | None:intergenic |
| ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7.3:+72754721 | None:intergenic |
| GCCAGACAACAAGCTCAATA+GGG | 0.492274 | 7.3:+72754420 | None:intergenic |
| CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7.3:+72756232 | None:intergenic |
| CAGAATCCTAGAAGCCATCA+AGG | 0.506009 | 7.3:-72754175 | MS.gene001917:intron |
| TCAAGATGCTCCTCAAGTAC+AGG | 0.506258 | 7.3:-72754716 | MS.gene001917:CDS |
| GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7.3:-72756164 | MS.gene001917:CDS |
| TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7.3:-72754030 | MS.gene001917:CDS |
| GAAGGAACGTCTCCTGAAAA+GGG | 0.516781 | 7.3:-72754673 | MS.gene001917:CDS |
| TGTTACCTATCTTATTGAGC+AGG | 0.519415 | 7.3:-72754580 | MS.gene001917:intron |
| TGCAGATTCAGAGGAAGAAG+AGG | 0.520421 | 7.3:-72756186 | MS.gene001917:CDS |
| GAAGAATACAGCACTGAAAG+TGG | 0.539763 | 7.3:-72756308 | MS.gene001917:CDS |
| GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7.3:+72754224 | None:intergenic |
| CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7.3:-72756231 | MS.gene001917:CDS |
| TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7.3:-72754031 | MS.gene001917:CDS |
| TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7.3:+72754367 | None:intergenic |
| TGAGGACAAAGCTGAAAAGA+AGG | 0.558356 | 7.3:-72754691 | MS.gene001917:CDS |
| AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7.3:-72754372 | MS.gene001917:CDS |
| AAGGGCCCAAGCCGAATCTG+AGG | 0.570757 | 7.3:-72754655 | MS.gene001917:CDS |
| CCAAAACAGTGCAGATTCAG+AGG | 0.573781 | 7.3:-72756195 | MS.gene001917:CDS |
| GCTCAATAGGGTCGACATCG+TGG | 0.579407 | 7.3:+72754432 | None:intergenic |
| CTCAATAGGGTCGACATCGT+GGG | 0.587513 | 7.3:+72754433 | None:intergenic |
| TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7.3:+72754368 | None:intergenic |
| CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7.3:-72756262 | MS.gene001917:CDS |
| GTGAACTGGTTAAGAGCTGG+TGG | 0.603558 | 7.3:+72756139 | None:intergenic |
| TTAGTGAACTGGTTAAGAGC+TGG | 0.606450 | 7.3:+72756136 | None:intergenic |
| AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7.3:-72756265 | MS.gene001917:CDS |
| ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7.3:-72754371 | MS.gene001917:CDS |
| CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7.3:-72753964 | MS.gene001917:CDS |
| AGGGCCCAAGCCGAATCTGA+GGG | 0.638813 | 7.3:-72754654 | MS.gene001917:CDS |
| AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7.3:-72756171 | MS.gene001917:CDS |
| GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7.3:-72754026 | MS.gene001917:CDS |
| GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7.3:-72754029 | MS.gene001917:CDS |
| CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7.3:-72753988 | MS.gene001917:CDS |
| TTACAGGCACCAAAGCGCGG+TGG | 0.676428 | 7.3:-72756355 | MS.gene001917:intron |
| GCTCCTCAAGTACAGGCCTG+AGG | 0.691529 | 7.3:-72754709 | MS.gene001917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAATTTGTGTTTAAT+TGG | - | chr7.3:72754393-72754412 | MS.gene001917:CDS | 15.0% |
| !!! | GGTTATTATTGTTTAAAATA+AGG | - | chr7.3:72754877-72754896 | MS.gene001917:intron | 15.0% |
| !!! | TTTTAGATTTGGTTTTAATT+TGG | - | chr7.3:72754341-72754360 | MS.gene001917:intron | 15.0% |
| !!! | TTTTAGATTTGGTTTTATTT+TGG | - | chr7.3:72754581-72754600 | MS.gene001917:CDS | 15.0% |
| !!! | TTTTTATGTTGTTGATTAAT+TGG | - | chr7.3:72754671-72754690 | MS.gene001917:CDS | 15.0% |
| !! | ATTGTTGAAATCATGATTAT+TGG | - | chr7.3:72755577-72755596 | MS.gene001917:intron | 20.0% |
| !! | TAGCTCATTTGATTATAAAA+TGG | - | chr7.3:72754309-72754328 | MS.gene001917:intron | 20.0% |
| !! | TTTATGTGTAATGCTTTAAT+GGG | - | chr7.3:72754366-72754385 | MS.gene001917:CDS | 20.0% |
| !!! | ATTGATTTGAATTTGATGAA+AGG | - | chr7.3:72755022-72755041 | MS.gene001917:intron | 20.0% |
| !!! | CGATTATGTTAATTTTTTAC+AGG | - | chr7.3:72754016-72754035 | MS.gene001917:CDS | 20.0% |
| !!! | GATGATAGTTTAAATTGTTT+TGG | - | chr7.3:72755371-72755390 | MS.gene001917:intron | 20.0% |
| !!! | GGTTAATTTTATTGAACTAT+CGG | + | chr7.3:72756284-72756303 | None:intergenic | 20.0% |
| !!! | GTTTAGTGTTGTTAAAATTT+AGG | - | chr7.3:72755093-72755112 | MS.gene001917:intron | 20.0% |
| !!! | TGTATATTTTATCTATTGCT+TGG | - | chr7.3:72755304-72755323 | MS.gene001917:intron | 20.0% |
| !!! | TGTTGTTGTTTTAATTTCTT+TGG | - | chr7.3:72755223-72755242 | MS.gene001917:intron | 20.0% |
| !!! | TTGATTTGAATTTGATGAAA+GGG | - | chr7.3:72755023-72755042 | MS.gene001917:intron | 20.0% |
| !!! | TTTGTTGTGGTTTTTTTTTT+GGG | - | chr7.3:72755181-72755200 | MS.gene001917:intron | 20.0% |
| !!! | TTTTTTACCTTCTATTTTTC+AGG | - | chr7.3:72756315-72756334 | MS.gene001917:CDS | 20.0% |
| ! | AAGCCTATTAATGTGAAATA+CGG | - | chr7.3:72755775-72755794 | MS.gene001917:intron | 25.0% |
| ! | AATACAATATCAAACAGTCT+TGG | + | chr7.3:72755256-72755275 | None:intergenic | 25.0% |
| ! | GATTTAGTGTTAATGTGAAA+TGG | - | chr7.3:72755071-72755090 | MS.gene001917:intron | 25.0% |
| ! | GTCACAAATTATAAATTCAC+AGG | + | chr7.3:72756095-72756114 | None:intergenic | 25.0% |
| ! | GTTTATGTGTAATGCTTTAA+TGG | - | chr7.3:72754365-72754384 | MS.gene001917:CDS | 25.0% |
| ! | TAACTTTAACGACAAATTTG+AGG | - | chr7.3:72756339-72756358 | MS.gene001917:CDS | 25.0% |
| ! | TTTATGTCTAATGCTGTAAT+GGG | - | chr7.3:72754606-72754625 | MS.gene001917:CDS | 25.0% |
| !! | GAAGTTTAATTTCTTTGTTG+TGG | - | chr7.3:72755168-72755187 | MS.gene001917:intron | 25.0% |
| !! | GTTGTTGTTGTAGATTAATT+AGG | - | chr7.3:72754856-72754875 | MS.gene001917:intron | 25.0% |
| !! | TGTGATTGTGATTTTAGATT+TGG | - | chr7.3:72754570-72754589 | MS.gene001917:intron | 25.0% |
| !! | TTATGTTGTTGCTGATTAAT+TGG | - | chr7.3:72754434-72754453 | MS.gene001917:CDS | 25.0% |
| !!! | CTGATTAATTGGTTTTAGTT+TGG | - | chr7.3:72754445-72754464 | MS.gene001917:CDS | 25.0% |
| !!! | CTTTGTTGTGGTTTTTTTTT+TGG | - | chr7.3:72755180-72755199 | MS.gene001917:intron | 25.0% |
| !!! | GTTTTAGTTTGGTGTTTTTT+GGG | - | chr7.3:72754456-72754475 | MS.gene001917:CDS | 25.0% |
| !!! | TTGTGAAATGTTTTGATGTT+TGG | - | chr7.3:72754710-72754729 | MS.gene001917:CDS | 25.0% |
| AAGACACTCGATAAAAATCT+CGG | - | chr7.3:72754272-72754291 | MS.gene001917:intron | 30.0% | |
| AATGTGATAGATTGGTGTAA+TGG | - | chr7.3:72755333-72755352 | MS.gene001917:intron | 30.0% | |
| AGGTAAAAAACGAACAGAAA+AGG | + | chr7.3:72756305-72756324 | None:intergenic | 30.0% | |
| AGTCCGTATTTCACATTAAT+AGG | + | chr7.3:72755781-72755800 | None:intergenic | 30.0% | |
| ATGTGATAGATTGGTGTAAT+GGG | - | chr7.3:72755334-72755353 | MS.gene001917:intron | 30.0% | |
| ATTCACAGGTGAAAATTCTA+TGG | + | chr7.3:72756081-72756100 | None:intergenic | 30.0% | |
| ATTTGACAAGGTTTGTGAAA+TGG | - | chr7.3:72754168-72754187 | MS.gene001917:intron | 30.0% | |
| CATACACATAAATATGCTGT+AGG | + | chr7.3:72754780-72754799 | None:intergenic | 30.0% | |
| GGAAATAGAATGTGATAGAT+TGG | - | chr7.3:72755325-72755344 | MS.gene001917:intron | 30.0% | |
| GTTTATGTCTAATGCTGTAA+TGG | - | chr7.3:72754605-72754624 | MS.gene001917:CDS | 30.0% | |
| TTCTTACTAACAGTTACTTG+TGG | - | chr7.3:72755897-72755916 | MS.gene001917:intron | 30.0% | |
| ! | AAGTTAGCCTGAAAAATAGA+AGG | + | chr7.3:72756325-72756344 | None:intergenic | 30.0% |
| ! | CATTTTGTCTTCATTCTTGA+CGG | + | chr7.3:72756184-72756203 | None:intergenic | 30.0% |
| !!! | GGTTTTAGTTTGGTGTTTTT+TGG | - | chr7.3:72754455-72754474 | MS.gene001917:CDS | 30.0% |
| !!! | TAAATTGTTTTGGAACATGC+TGG | - | chr7.3:72755381-72755400 | MS.gene001917:intron | 30.0% |
| !!! | TTGCTGTATTGTTTTGACTA+TGG | - | chr7.3:72755472-72755491 | MS.gene001917:intron | 30.0% |
| AACCTTGTCAAATCTCTCTT+TGG | + | chr7.3:72754161-72754180 | None:intergenic | 35.0% | |
| ACGACAAATTTGAGGAAAAC+AGG | - | chr7.3:72756347-72756366 | MS.gene001917:CDS | 35.0% | |
| AGTATCTGTACTCTCATACT+CGG | - | chr7.3:72755856-72755875 | MS.gene001917:intron | 35.0% | |
| CAAAACATTTCACAACAGCA+GGG | + | chr7.3:72754803-72754822 | None:intergenic | 35.0% | |
| CAAATCTCAAGCGAAAACAA+AGG | - | chr7.3:72756399-72756418 | MS.gene001917:intron | 35.0% | |
| CGTCAAGAATGAAGACAAAA+TGG | - | chr7.3:72756182-72756201 | MS.gene001917:CDS | 35.0% | |
| GAATATCTCGTTTGTGTTGT+TGG | - | chr7.3:72755434-72755453 | MS.gene001917:intron | 35.0% | |
| GCTTGAAAATGGTATGTGAT+AGG | - | chr7.3:72754965-72754984 | MS.gene001917:intron | 35.0% | |
| TCAAAACATTTCACAACAGC+AGG | + | chr7.3:72754804-72754823 | None:intergenic | 35.0% | |
| TCAAGTTTGAACTACCTTGA+TGG | + | chr7.3:72756229-72756248 | None:intergenic | 35.0% | |
| TGTTACCTATCTTATTGAGC+AGG | - | chr7.3:72755807-72755826 | MS.gene001917:intron | 35.0% | |
| TTGTGTTGAGTGCTTGAAAA+TGG | - | chr7.3:72754954-72754973 | MS.gene001917:intron | 35.0% | |
| ! | ATGGTATGTGATAGGTTTTG+TGG | - | chr7.3:72754973-72754992 | MS.gene001917:intron | 35.0% |
| ! | GGTGATTGCGATTTTAGATT+TGG | - | chr7.3:72754330-72754349 | MS.gene001917:intron | 35.0% |
| ! | TGACTGTTGTTTGTGATTGT+TGG | - | chr7.3:72755554-72755573 | MS.gene001917:intron | 35.0% |
| !! | TGGTATGTGATAGGTTTTGT+GGG | - | chr7.3:72754974-72754993 | MS.gene001917:intron | 35.0% |
| !!! | CTTTGTTTTCGCTTGAGATT+TGG | + | chr7.3:72756401-72756420 | None:intergenic | 35.0% |
| !!! | GTTTTGACTATGGCTATTGA+AGG | - | chr7.3:72755482-72755501 | MS.gene001917:intron | 35.0% |
| !!! | TTGGGAAGTGTTTTGATGTT+TGG | - | chr7.3:72754474-72754493 | MS.gene001917:intron | 35.0% |
| AATTCCCTACTGCATTGTCA+AGG | - | chr7.3:72756015-72756034 | MS.gene001917:intron | 40.0% | |
| AGAAGAGGCCAAAGCAATTT+GGG | - | chr7.3:72754117-72754136 | MS.gene001917:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+GGG | + | chr7.3:72753951-72753970 | None:intergenic | 40.0% | |
| ATTCCCTACTGCATTGTCAA+GGG | - | chr7.3:72756016-72756035 | MS.gene001917:intron | 40.0% | |
| CAAAGAAAGACTCATTGCCA+AGG | - | chr7.3:72756423-72756442 | MS.gene001917:intron | 40.0% | |
| CACCAAAGAGAGATTTGACA+AGG | - | chr7.3:72754156-72754175 | MS.gene001917:intron | 40.0% | |
| CAGTACCTGCTCAATAAGAT+AGG | + | chr7.3:72755815-72755834 | None:intergenic | 40.0% | |
| CTTGGCAATGAGTCTTTCTT+TGG | + | chr7.3:72756425-72756444 | None:intergenic | 40.0% | |
| CTTGTCAAATCTCTCTTTGG+TGG | + | chr7.3:72754158-72754177 | None:intergenic | 40.0% | |
| GGAGTAGTTTGAGAGATGTT+AGG | - | chr7.3:72754995-72755014 | MS.gene001917:intron | 40.0% | |
| TATCGAGTGTCTTAGTGAAC+TGG | + | chr7.3:72754265-72754284 | None:intergenic | 40.0% | |
| TGAGGAAAACAGGAAGAAGT+GGG | - | chr7.3:72756357-72756376 | MS.gene001917:intron | 40.0% | |
| TGAGGACAAAGCTGAAAAGA+AGG | - | chr7.3:72755696-72755715 | MS.gene001917:intron | 40.0% | |
| TGGCTATTGAAGGTTCTGTA+TGG | - | chr7.3:72755492-72755511 | MS.gene001917:intron | 40.0% | |
| TTAGTGAACTGGTTAAGAGC+TGG | + | chr7.3:72754254-72754273 | None:intergenic | 40.0% | |
| TTGAGGAAAACAGGAAGAAG+TGG | - | chr7.3:72756356-72756375 | MS.gene001917:intron | 40.0% | |
| TTGGCCTCTTCTCAAAAAGT+GGG | + | chr7.3:72754109-72754128 | None:intergenic | 40.0% | |
| TTTGGCCTCTTCTCAAAAAG+TGG | + | chr7.3:72754110-72754129 | None:intergenic | 40.0% | |
| ! | CTCTGAATCTGCACTGTTTT+GGG | + | chr7.3:72754194-72754213 | None:intergenic | 40.0% |
| ! | GAAGAATACAGCACTGAAAG+TGG | - | chr7.3:72754079-72754098 | MS.gene001917:intron | 40.0% |
| ! | TGAAGGTTCTGTATGGACTA+TGG | - | chr7.3:72755499-72755518 | MS.gene001917:intron | 40.0% |
| ! | TGATAGATTGGTGTAATGGG+AGG | - | chr7.3:72755337-72755356 | MS.gene001917:intron | 40.0% |
| !! | ACTTGAGGAGCATCTTGAAA+AGG | + | chr7.3:72755669-72755688 | None:intergenic | 40.0% |
| !! | TTCTTTTCAGCTTTGTCCTC+AGG | + | chr7.3:72755697-72755716 | None:intergenic | 40.0% |
| !!! | CTTGTGGCTTTTTCAGAACA+AGG | - | chr7.3:72755913-72755932 | MS.gene001917:intron | 40.0% |
| !!! | TGAACCCACTTTTTGAGAAG+AGG | - | chr7.3:72754102-72754121 | MS.gene001917:intron | 40.0% |
| AGAAGAGGATCCTTAAGCAG+AGG | - | chr7.3:72754216-72754235 | MS.gene001917:CDS | 45.0% | |
| AGAAGGAACGTCTCCTGAAA+AGG | - | chr7.3:72755713-72755732 | MS.gene001917:intron | 45.0% | |
| AGCCAGACAACAAGCTCAAT+AGG | + | chr7.3:72755971-72755990 | None:intergenic | 45.0% | |
| CAGAATCCTAGAAGCCATCA+AGG | - | chr7.3:72756212-72756231 | MS.gene001917:CDS | 45.0% | |
| CAGAGAGAGAGAGAGAGATT+AGG | + | chr7.3:72753952-72753971 | None:intergenic | 45.0% | |
| CATTCTTTGAGCAGCTTCCT+TGG | + | chr7.3:72756443-72756462 | None:intergenic | 45.0% | |
| CCAAAACAGTGCAGATTCAG+AGG | - | chr7.3:72754192-72754211 | MS.gene001917:CDS | 45.0% | |
| GAACCTTCAACCTCTGCTTA+AGG | + | chr7.3:72754229-72754248 | None:intergenic | 45.0% | |
| GAAGGAACGTCTCCTGAAAA+GGG | - | chr7.3:72755714-72755733 | MS.gene001917:intron | 45.0% | |
| GACGGTTGTCAAGCACAAAA+CGG | + | chr7.3:72756166-72756185 | None:intergenic | 45.0% | |
| GAGAAGAGGCCAAAGCAATT+TGG | - | chr7.3:72754116-72754135 | MS.gene001917:intron | 45.0% | |
| GAGGAAAACAGGAAGAAGTG+GGG | - | chr7.3:72756358-72756377 | MS.gene001917:intron | 45.0% | |
| GATCCTTAAGCAGAGGTTGA+AGG | - | chr7.3:72754223-72754242 | MS.gene001917:CDS | 45.0% | |
| GCCAGACAACAAGCTCAATA+GGG | + | chr7.3:72755970-72755989 | None:intergenic | 45.0% | |
| TCAAGATGCTCCTCAAGTAC+AGG | - | chr7.3:72755671-72755690 | MS.gene001917:intron | 45.0% | |
| TCCATCTTTCTGCACAAAGC+TGG | + | chr7.3:72755995-72756014 | None:intergenic | 45.0% | |
| TGCAGATTCAGAGGAAGAAG+AGG | - | chr7.3:72754201-72754220 | MS.gene001917:CDS | 45.0% | |
| TTCTTCTTAGCAGCTGCAAC+TGG | + | chr7.3:72754065-72754084 | None:intergenic | 45.0% | |
| TTGCCCTTGACAATGCAGTA+GGG | + | chr7.3:72756022-72756041 | None:intergenic | 45.0% | |
| TTTGCCCTTGACAATGCAGT+AGG | + | chr7.3:72756023-72756042 | None:intergenic | 45.0% | |
| ! | AAGTGGGGTGGTGGTATTAT+GGG | - | chr7.3:72756373-72756392 | MS.gene001917:intron | 45.0% |
| ! | AGGCCAAAGCAATTTGGGAT+CGG | - | chr7.3:72754122-72754141 | MS.gene001917:intron | 45.0% |
| ! | CCTCTGAATCTGCACTGTTT+TGG | + | chr7.3:72754195-72754214 | None:intergenic | 45.0% |
| ! | GAACTACCTTGATGGCTTCT+AGG | + | chr7.3:72756221-72756240 | None:intergenic | 45.0% |
| ! | GACTGTTTTGCCCTCAGATT+CGG | + | chr7.3:72755746-72755765 | None:intergenic | 45.0% |
| ! | TCCAGCTTTGTGCAGAAAGA+TGG | - | chr7.3:72755991-72756010 | MS.gene001917:intron | 45.0% |
| ! | TTTTCAGAACAAGGCACAGC+TGG | - | chr7.3:72755922-72755941 | MS.gene001917:intron | 45.0% |
| ! | TTTTTACAGGCACCAAAGCG+CGG | - | chr7.3:72754029-72754048 | MS.gene001917:CDS | 45.0% |
| !! | ACCCTATTGAGCTTGTTGTC+TGG | - | chr7.3:72755966-72755985 | MS.gene001917:intron | 45.0% |
| !! | TGAGCAGGTACTGCTTCTTT+TGG | - | chr7.3:72755822-72755841 | MS.gene001917:intron | 45.0% |
| CCACCGATCCCAAATTGCTT+TGG | + | chr7.3:72754128-72754147 | None:intergenic | 50.0% | |
| CTCAATAGGGTCGACATCGT+GGG | + | chr7.3:72755957-72755976 | None:intergenic | 50.0% | |
| GAAAACAGGAAGAAGTGGGG+TGG | - | chr7.3:72756361-72756380 | MS.gene001917:intron | 50.0% | |
| GTCAAGGGCAAAGCACGTTT+GGG | - | chr7.3:72756031-72756050 | MS.gene001917:intron | 50.0% | |
| GTGAACTGGTTAAGAGCTGG+TGG | + | chr7.3:72754251-72754270 | None:intergenic | 50.0% | |
| TGTCAAGGGCAAAGCACGTT+TGG | - | chr7.3:72756030-72756049 | MS.gene001917:intron | 50.0% | |
| TTTGCCCTCAGATTCGGCTT+GGG | + | chr7.3:72755740-72755759 | None:intergenic | 50.0% | |
| ! | CCAAAGCAATTTGGGATCGG+TGG | - | chr7.3:72754125-72754144 | MS.gene001917:intron | 50.0% |
| ! | GAAGTGGGGTGGTGGTATTA+TGG | - | chr7.3:72756372-72756391 | MS.gene001917:intron | 50.0% |
| ! | TTTTGCCCTCAGATTCGGCT+TGG | + | chr7.3:72755741-72755760 | None:intergenic | 50.0% |
| AACAGGAAGAAGTGGGGTGG+TGG | - | chr7.3:72756364-72756383 | MS.gene001917:intron | 55.0% | |
| GCTCAATAGGGTCGACATCG+TGG | + | chr7.3:72755958-72755977 | None:intergenic | 55.0% | |
| TGTCCTCAGGCCTGTACTTG+AGG | + | chr7.3:72755684-72755703 | None:intergenic | 55.0% | |
| !!! | ATTCGGCTTGGGCCCTTTTC+AGG | + | chr7.3:72755729-72755748 | None:intergenic | 55.0% |
| AAGGGCCCAAGCCGAATCTG+AGG | - | chr7.3:72755732-72755751 | MS.gene001917:intron | 60.0% | |
| AGGGCCCAAGCCGAATCTGA+GGG | - | chr7.3:72755733-72755752 | MS.gene001917:intron | 60.0% | |
| GCTCCTCAAGTACAGGCCTG+AGG | - | chr7.3:72755678-72755697 | MS.gene001917:intron | 60.0% | |
| TTACAGGCACCAAAGCGCGG+TGG | - | chr7.3:72754032-72754051 | MS.gene001917:CDS | 60.0% | |
| ! | GGTGCTTTTCCACCGCGCTT+TGG | + | chr7.3:72754044-72754063 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 72753941 | 72756468 | 72753941 | ID=MS.gene001917 |
| chr7.3 | mRNA | 72753941 | 72756468 | 72753941 | ID=MS.gene001917.t1;Parent=MS.gene001917 |
| chr7.3 | exon | 72756466 | 72756468 | 72756466 | ID=MS.gene001917.t1.exon1;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72756466 | 72756468 | 72756466 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| chr7.3 | exon | 72756116 | 72756371 | 72756116 | ID=MS.gene001917.t1.exon2;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72756116 | 72756371 | 72756116 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| chr7.3 | exon | 72754581 | 72754750 | 72754581 | ID=MS.gene001917.t1.exon3;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72754581 | 72754750 | 72754581 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| chr7.3 | exon | 72754352 | 72754480 | 72754352 | ID=MS.gene001917.t1.exon4;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72754352 | 72754480 | 72754352 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| chr7.3 | exon | 72754176 | 72754268 | 72754176 | ID=MS.gene001917.t1.exon5;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72754176 | 72754268 | 72754176 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| chr7.3 | exon | 72753941 | 72754072 | 72753941 | ID=MS.gene001917.t1.exon6;Parent=MS.gene001917.t1 |
| chr7.3 | CDS | 72753941 | 72754072 | 72753941 | ID=cds.MS.gene001917.t1;Parent=MS.gene001917.t1 |
| Gene Sequence |
| Protein sequence |
