AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044819

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044819.t1 MTR_7g027235 99.615 260 1 0 1 260 1 260 0.0 524
MS.gene044819.t1 MTR_4g074260 93.077 260 17 1 1 260 1 259 2.65e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044819.t1 AT3G62870 82.308 260 42 1 1 260 1 256 2.40e-160 445
MS.gene044819.t1 AT2G47610 86.008 243 34 0 18 260 15 257 7.28e-159 441

Find 67 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCAATGAGTCTTTCTT+TGG 0.198830 7.2:+72273627 None:intergenic
GAACTACCTTGATGGCTTCT+AGG 0.250413 7.2:+72273831 None:intergenic
GAAGTGGGGTGGTGGTATTA+TGG 0.264609 7.2:-72273677 MS.gene044819:CDS
GAGAAGAGGCCAAAGCAATT+TGG 0.270772 7.2:-72275790 MS.gene044819:CDS
AGTCCATATTTCACATTAAT+AGG 0.274436 7.2:+72274271 None:intergenic
AAGCCTATTAATGTGAAATA+TGG 0.287894 7.2:-72274274 MS.gene044819:CDS
AACCTTGTCAAATCTCTCTT+TGG 0.311553 7.2:+72275748 None:intergenic
CGTCAAGAATGAAGACAAAA+TGG 0.320782 7.2:-72273867 MS.gene044819:CDS
AGAAGAGGCCAAAGCAATTT+GGG 0.324521 7.2:-72275789 MS.gene044819:CDS
AAGTGGGGTGGTGGTATTAT+GGG 0.327204 7.2:-72273676 MS.gene044819:CDS
TGTCAAGGGCAAAGCACGTT+TGG 0.330406 7.2:-72274019 MS.gene044819:CDS
AGCCAGACAACGAGCTCAAT+TGG 0.346442 7.2:+72274081 None:intergenic
CTCTGAATCTGCACCGTCTT+AGG 0.355241 7.2:+72275715 None:intergenic
CATTCTTTGAGCAGCTTCCT+TGG 0.361728 7.2:+72273609 None:intergenic
TCAAGTTTGAACTACCTTGA+TGG 0.365851 7.2:+72273823 None:intergenic
TTCTTCTTCGCTGCTGCAAC+TGG 0.368855 7.2:+72275844 None:intergenic
TATCGAGTGTCTTAGTGAAC+TGG 0.404157 7.2:+72275644 None:intergenic
GTCAAGGGCAAAGCACGTTT+GGG 0.409984 7.2:-72274018 MS.gene044819:CDS
ACGACAAATTTGAGGAAAAC+AGG 0.415015 7.2:-72273702 MS.gene044819:CDS
ACCCAATTGAGCTCGTTGTC+TGG 0.417238 7.2:-72274083 MS.gene044819:CDS
TCCAGCTTTGTGCAGAAAGA+TGG 0.419185 7.2:-72274058 MS.gene044819:CDS
TTTGCCCTCAGATTCGGCTT+GGG 0.426690 7.2:+72274312 None:intergenic
ATTTGACAAGGTTTGTGAAA+TGG 0.429794 7.2:-72275738 MS.gene044819:CDS
CCACCGATCCCAAATTGCTT+TGG 0.444497 7.2:+72275781 None:intergenic
AGAAGGAACGTCTCTTGAAA+AGG 0.447060 7.2:-72274336 MS.gene044819:CDS
CAGTACCTGCTCAATAAGAT+AGG 0.450777 7.2:+72274237 None:intergenic
TCCATCTTTCTGCACAAAGC+TGG 0.451418 7.2:+72274057 None:intergenic
TAACTTTAACGACAAATTTG+AGG 0.461068 7.2:-72273710 MS.gene044819:CDS
TGTCCTCAGGCCTGTACTTG+AGG 0.467651 7.2:+72274368 None:intergenic
AACAGGAAGAAGTGGGGTGG+TGG 0.477152 7.2:-72273685 MS.gene044819:CDS
GAACCTTCAACCTCTGCTTA+AGG 0.478965 7.2:+72275680 None:intergenic
ACTTGAGGAGCATCTTGAAA+AGG 0.488088 7.2:+72274383 None:intergenic
CTTGTCAAATCTCTCTTTGG+TGG 0.494306 7.2:+72275751 None:intergenic
GCCAGACAACGAGCTCAATT+GGG 0.496078 7.2:+72274082 None:intergenic
CAGAATCCTAGAAGCCATCA+AGG 0.506009 7.2:-72273837 MS.gene044819:intron
TCAAGATGCTCCTCAAGTAC+AGG 0.506258 7.2:-72274378 MS.gene044819:CDS
GATCCTTAAGCAGAGGTTGA+AGG 0.507984 7.2:-72275683 MS.gene044819:CDS
TGAGGAAAACAGGAAGAAGT+GGG 0.515672 7.2:-72273692 MS.gene044819:CDS
GAAGGAACGTCTCTTGAAAA+GGG 0.519164 7.2:-72274335 MS.gene044819:CDS
TGTTACCTATCTTATTGAGC+AGG 0.541671 7.2:-72274242 MS.gene044819:intron
TGCAGATTCAGAGGAAGAAG+AGG 0.543903 7.2:-72275705 MS.gene044819:CDS
GACGGTTGTCAAGCACAAAA+CGG 0.544344 7.2:+72273886 None:intergenic
CACCAAAGAGAGATTTGACA+AGG 0.544974 7.2:-72275750 MS.gene044819:CDS
GAAGAATACAGCACTGAAAG+TGG 0.550599 7.2:-72275827 MS.gene044819:CDS
TTGAGGAAAACAGGAAGAAG+TGG 0.552443 7.2:-72273693 MS.gene044819:CDS
TTTGCCCTTGACAATGCAGT+AGG 0.558136 7.2:+72274029 None:intergenic
TGAGGACAAAGCTGAAAAGA+AGG 0.558356 7.2:-72274353 MS.gene044819:CDS
AATTCCCTACTGCATTGTCA+AGG 0.570742 7.2:-72274034 MS.gene044819:CDS
AAGGGCCCAAGCCGAATCTG+AGG 0.570757 7.2:-72274317 MS.gene044819:CDS
TTAGTGAACTGGTTAAGAGC+AGG 0.576262 7.2:+72275655 None:intergenic
TTGCCCTTGACAATGCAGTA+GGG 0.602893 7.2:+72274030 None:intergenic
CTAAGACGGTGCAGATTCAG+AGG 0.603377 7.2:-72275714 MS.gene044819:CDS
CCAAAGCAATTTGGGATCGG+TGG 0.603444 7.2:-72275781 MS.gene044819:CDS
AGGCCAAAGCAATTTGGGAT+CGG 0.609688 7.2:-72275784 MS.gene044819:CDS
GTTTGTGAAATGGCCTAAGA+CGG 0.612460 7.2:-72275728 MS.gene044819:CDS
ATTCCCTACTGCATTGTCAA+GGG 0.614650 7.2:-72274033 MS.gene044819:CDS
CAAAGAAAGACTCATTGCCA+AGG 0.625721 7.2:-72273626 MS.gene044819:CDS
GTGAACTGGTTAAGAGCAGG+TGG 0.627497 7.2:+72275658 None:intergenic
AGGGCCCAAGCCGAATCTGA+GGG 0.638813 7.2:-72274316 MS.gene044819:CDS
AGAAGAGGATCCTTAAGCAG+AGG 0.647604 7.2:-72275690 MS.gene044819:CDS
TATTTACAGGCACCAAAGCG+CGG 0.650226 7.2:-72275877 MS.gene044819:intron
GAAAACAGGAAGAAGTGGGG+TGG 0.655947 7.2:-72273688 MS.gene044819:CDS
GCTCAATAAGATAGGTAACA+TGG 0.658823 7.2:+72274245 None:intergenic
TTACAGGCACCAAAGCGCGG+TGG 0.663704 7.2:-72275874 MS.gene044819:intron
GAGGAAAACAGGAAGAAGTG+GGG 0.665767 7.2:-72273691 MS.gene044819:CDS
CAAATCTCAAGCGAAAACAA+AGG 0.673595 7.2:-72273650 MS.gene044819:CDS
GCTCCTCAAGTACAGGCCTG+AGG 0.691529 7.2:-72274371 MS.gene044819:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATTTGTGTTTAAT+TGG - chr7.2:72274072-72274091 MS.gene044819:CDS 10.0%
!!! TTAATTGATTTAATTGATAT+GGG - chr7.2:72274389-72274408 MS.gene044819:CDS 10.0%
!!! TTTAATTGATTTAATTGATA+TGG - chr7.2:72274388-72274407 MS.gene044819:CDS 10.0%
!! ATGTTTGATCAATAAAATTT+AGG - chr7.2:72274133-72274152 MS.gene044819:intron 15.0%
!! ATTATTGAAATCATGATTAT+TGG - chr7.2:72275106-72275125 MS.gene044819:intron 15.0%
!!! GGTTATTATTGTTTAAAATA+AGG - chr7.2:72274216-72274235 MS.gene044819:intron 15.0%
!!! TTTGTTCTTTTTTAAGATAA+GGG - chr7.2:72274609-72274628 MS.gene044819:intron 15.0%
!!! TTTTAGATTTGGTTTTAATT+TGG - chr7.2:72274013-72274032 MS.gene044819:intron 15.0%
!!! TTTTGTTCTTTTTTAAGATA+AGG - chr7.2:72274608-72274627 MS.gene044819:intron 15.0%
!! CGATTATCTTTATTATTTAC+AGG - chr7.2:72273688-72273707 MS.gene044819:CDS 20.0%
!! GCTATTGTTATAGATTAATT+GGG - chr7.2:72274195-72274214 MS.gene044819:intron 20.0%
!! TAATGTGAAATGGTTTAATT+GGG - chr7.2:72274460-72274479 MS.gene044819:intron 20.0%
!! TACTTGTTCATATAAACAAA+AGG + chr7.2:72275369-72275388 None:intergenic 20.0%
!! TAGCTCATTTGTTTATAAAA+TGG - chr7.2:72273981-72274000 MS.gene044819:intron 20.0%
!! TGCTATTGTTATAGATTAAT+TGG - chr7.2:72274194-72274213 MS.gene044819:intron 20.0%
!! TTAATGTGAAATGGTTTAAT+TGG - chr7.2:72274459-72274478 MS.gene044819:intron 20.0%
!! TTTATGTGTAATGCTTTAAT+GGG - chr7.2:72274038-72274057 MS.gene044819:CDS 20.0%
!!! GATGTTAGTTTAAATTGTTT+TGG - chr7.2:72274905-72274924 MS.gene044819:intron 20.0%
!!! GGTTAATTTTATTGAACTAT+CGG + chr7.2:72275813-72275832 None:intergenic 20.0%
!!! TTTTTTACCTTCTATTTTTC+AGG - chr7.2:72275844-72275863 MS.gene044819:CDS 20.0%
! AAGCCTATTAATGTGAAATA+TGG - chr7.2:72275304-72275323 MS.gene044819:intron 25.0%
! AAGTTTCATTTCTTTGTTCT+GGG - chr7.2:72274562-72274581 MS.gene044819:intron 25.0%
! AGTCCATATTTCACATTAAT+AGG + chr7.2:72275310-72275329 None:intergenic 25.0%
! ATCCAAAAATCACAAAACAA+TGG + chr7.2:72275088-72275107 None:intergenic 25.0%
! ATGGTATTTGATATGTGTAA+TGG - chr7.2:72274344-72274363 MS.gene044819:CDS 25.0%
! ATTTGTGTTTAATTGGCATA+TGG - chr7.2:72274079-72274098 MS.gene044819:CDS 25.0%
! GGAAATAGTATATGATAGTT+TGG - chr7.2:72274853-72274872 MS.gene044819:intron 25.0%
! GTCACAAATTATAAATTCAC+AGG + chr7.2:72275624-72275643 None:intergenic 25.0%
! GTTTATGTGTAATGCTTTAA+TGG - chr7.2:72274037-72274056 MS.gene044819:CDS 25.0%
! TAACTTTAACGACAAATTTG+AGG - chr7.2:72275868-72275887 MS.gene044819:CDS 25.0%
! TACCAATCAAAAACAAAAGA+CGG + chr7.2:72274993-72275012 None:intergenic 25.0%
! TGGTATTTGATATGTGTAAT+GGG - chr7.2:72274345-72274364 MS.gene044819:CDS 25.0%
! TTATTACTAACTGTAACTTG+TGG - chr7.2:72275426-72275445 MS.gene044819:intron 25.0%
!!! GGTGATTATGTTTTTAGATT+TGG - chr7.2:72274002-72274021 MS.gene044819:intron 25.0%
!!! TAAATTGTTTTGGAACATGT+TGG - chr7.2:72274915-72274934 MS.gene044819:intron 25.0%
!!! TGTTTATTTTATCGATTGCA+TGG - chr7.2:72274832-72274851 MS.gene044819:intron 25.0%
!!! TGTTTATTTTGTCTATTGCT+TGG - chr7.2:72274686-72274705 MS.gene044819:intron 25.0%
AAGACACTCGATAAAAATCT+CGG - chr7.2:72273944-72273963 MS.gene044819:intron 30.0%
ACCAATCAAAAACAAAAGAC+GGG + chr7.2:72274992-72275011 None:intergenic 30.0%
AGGTAAAAAACGAACAGAAA+TGG + chr7.2:72275834-72275853 None:intergenic 30.0%
ATCACAAATACGATAGTCTT+CGG + chr7.2:72274968-72274987 None:intergenic 30.0%
ATTCACAGGTGAAAATTCTA+TGG + chr7.2:72275610-72275629 None:intergenic 30.0%
ATTGGGTGGTTGTTAAAATT+TGG - chr7.2:72274477-72274496 MS.gene044819:intron 30.0%
ATTTGACAAGGTTTGTGAAA+TGG - chr7.2:72273840-72273859 MS.gene044819:CDS 30.0%
GAAGTTTCATTTCTTTGTTC+TGG - chr7.2:72274561-72274580 MS.gene044819:intron 30.0%
GATTTCGTGTTAATGTGAAA+TGG - chr7.2:72274450-72274469 MS.gene044819:intron 30.0%
GTATATGATAGTTTGGACTT+TGG - chr7.2:72274860-72274879 MS.gene044819:intron 30.0%
TGTTTATTATGTTGAGTGCT+TGG - chr7.2:72274319-72274338 MS.gene044819:CDS 30.0%
TTGGATAGTATGTGATAGTT+TGG - chr7.2:72274705-72274724 MS.gene044819:intron 30.0%
TTGGGTGGTTGTTAAAATTT+GGG - chr7.2:72274478-72274497 MS.gene044819:intron 30.0%
! AAGTTAGCCTGAAAAATAGA+AGG + chr7.2:72275854-72275873 None:intergenic 30.0%
! CATTTTGTCTTCATTCTTGA+CGG + chr7.2:72275713-72275732 None:intergenic 30.0%
!! GACCATTGTTTTGTGATTTT+TGG - chr7.2:72275083-72275102 MS.gene044819:intron 30.0%
!!! GTTTTGACTATGACTATTGA+AGG - chr7.2:72275017-72275036 MS.gene044819:intron 30.0%
AACCTTGTCAAATCTCTCTT+TGG + chr7.2:72273833-72273852 None:intergenic 35.0%
ACGACAAATTTGAGGAAAAC+AGG - chr7.2:72275876-72275895 MS.gene044819:intron 35.0%
CAAATCTCAAGCGAAAACAA+AGG - chr7.2:72275928-72275947 MS.gene044819:intron 35.0%
CGTCAAGAATGAAGACAAAA+TGG - chr7.2:72275711-72275730 MS.gene044819:CDS 35.0%
GCTCAATAAGATAGGTAACA+TGG + chr7.2:72275336-72275355 None:intergenic 35.0%
TCAAGTTTGAACTACCTTGA+TGG + chr7.2:72275758-72275777 None:intergenic 35.0%
TGACTATTGAAGGTTCTGTA+TGG - chr7.2:72275027-72275046 MS.gene044819:intron 35.0%
TGTGAAATGGTTTAATTGGG+TGG - chr7.2:72274463-72274482 MS.gene044819:intron 35.0%
TGTTACCTATCTTATTGAGC+AGG - chr7.2:72275336-72275355 MS.gene044819:intron 35.0%
TTATGTTGAGTGCTTGGAAA+TGG - chr7.2:72274325-72274344 MS.gene044819:CDS 35.0%
! ATTGGCATATGGTCTTAGTT+TGG - chr7.2:72274090-72274109 MS.gene044819:CDS 35.0%
!! TAGTTTGGACTTTGGAGTAA+TGG - chr7.2:72274868-72274887 MS.gene044819:intron 35.0%
!!! CTTTGTTTTCGCTTGAGATT+TGG + chr7.2:72275930-72275949 None:intergenic 35.0%
AATTCCCTACTGCATTGTCA+AGG - chr7.2:72275544-72275563 MS.gene044819:intron 40.0%
AGAAGAGGCCAAAGCAATTT+GGG - chr7.2:72273789-72273808 MS.gene044819:intron 40.0%
AGAAGGAACGTCTCTTGAAA+AGG - chr7.2:72275242-72275261 MS.gene044819:intron 40.0%
AGAGAGAGAGAGAGAGATTA+GGG + chr7.2:72273613-72273632 None:intergenic 40.0%
ATTCCCTACTGCATTGTCAA+GGG - chr7.2:72275545-72275564 MS.gene044819:intron 40.0%
CAAAGAAAGACTCATTGCCA+AGG - chr7.2:72275952-72275971 MS.gene044819:intron 40.0%
CACCAAAGAGAGATTTGACA+AGG - chr7.2:72273828-72273847 MS.gene044819:intron 40.0%
CAGTACCTGCTCAATAAGAT+AGG + chr7.2:72275344-72275363 None:intergenic 40.0%
CTTGGCAATGAGTCTTTCTT+TGG + chr7.2:72275954-72275973 None:intergenic 40.0%
CTTGTCAAATCTCTCTTTGG+TGG + chr7.2:72273830-72273849 None:intergenic 40.0%
GAAGGAACGTCTCTTGAAAA+GGG - chr7.2:72275243-72275262 MS.gene044819:intron 40.0%
GTTTGTGAAATGGCCTAAGA+CGG - chr7.2:72273850-72273869 MS.gene044819:CDS 40.0%
TATCGAGTGTCTTAGTGAAC+TGG + chr7.2:72273937-72273956 None:intergenic 40.0%
TGAGGAAAACAGGAAGAAGT+GGG - chr7.2:72275886-72275905 MS.gene044819:intron 40.0%
TGAGGACAAAGCTGAAAAGA+AGG - chr7.2:72275225-72275244 MS.gene044819:intron 40.0%
TTAGTGAACTGGTTAAGAGC+AGG + chr7.2:72273926-72273945 None:intergenic 40.0%
TTGAGGAAAACAGGAAGAAG+TGG - chr7.2:72275885-72275904 MS.gene044819:intron 40.0%
TTGGCCTCTTCTCAAAAAGT+GGG + chr7.2:72273781-72273800 None:intergenic 40.0%
TTTGGCCTCTTCTCAAAAAG+TGG + chr7.2:72273782-72273801 None:intergenic 40.0%
! GAAGAATACAGCACTGAAAG+TGG - chr7.2:72273751-72273770 MS.gene044819:intron 40.0%
!! ACTTGAGGAGCATCTTGAAA+AGG + chr7.2:72275198-72275217 None:intergenic 40.0%
!! TTCTTTTCAGCTTTGTCCTC+AGG + chr7.2:72275226-72275245 None:intergenic 40.0%
!! TTGGACTTTGGAGTAATGGT+AGG - chr7.2:72274872-72274891 MS.gene044819:intron 40.0%
!!! CTTGTGGCTTTTTCAGAACA+AGG - chr7.2:72275442-72275461 MS.gene044819:intron 40.0%
!!! GCCCGTCTTTTGTTTTTGAT+TGG - chr7.2:72274988-72275007 MS.gene044819:intron 40.0%
!!! TGAACCCACTTTTTGAGAAG+AGG - chr7.2:72273774-72273793 MS.gene044819:intron 40.0%
AGAAGAGGATCCTTAAGCAG+AGG - chr7.2:72273888-72273907 MS.gene044819:CDS 45.0%
CAGAATCCTAGAAGCCATCA+AGG - chr7.2:72275741-72275760 MS.gene044819:CDS 45.0%
CATTCTTTGAGCAGCTTCCT+TGG + chr7.2:72275972-72275991 None:intergenic 45.0%
GAACCTTCAACCTCTGCTTA+AGG + chr7.2:72273901-72273920 None:intergenic 45.0%
GACGGTTGTCAAGCACAAAA+CGG + chr7.2:72275695-72275714 None:intergenic 45.0%
GACGTACGAGTATGAGAGTA+TGG + chr7.2:72275393-72275412 None:intergenic 45.0%
GAGAAGAGGCCAAAGCAATT+TGG - chr7.2:72273788-72273807 MS.gene044819:intron 45.0%
GAGAGAGAGAGAGAGAGATT+AGG + chr7.2:72273614-72273633 None:intergenic 45.0%
GAGGAAAACAGGAAGAAGTG+GGG - chr7.2:72275887-72275906 MS.gene044819:intron 45.0%
GATCCTTAAGCAGAGGTTGA+AGG - chr7.2:72273895-72273914 MS.gene044819:CDS 45.0%
TATTTACAGGCACCAAAGCG+CGG - chr7.2:72273701-72273720 MS.gene044819:CDS 45.0%
TCAAGATGCTCCTCAAGTAC+AGG - chr7.2:72275200-72275219 MS.gene044819:intron 45.0%
TCCATCTTTCTGCACAAAGC+TGG + chr7.2:72275524-72275543 None:intergenic 45.0%
TGCAGATTCAGAGGAAGAAG+AGG - chr7.2:72273873-72273892 MS.gene044819:CDS 45.0%
TTGCCCTTGACAATGCAGTA+GGG + chr7.2:72275551-72275570 None:intergenic 45.0%
TTTGCCCTTGACAATGCAGT+AGG + chr7.2:72275552-72275571 None:intergenic 45.0%
! AAGTGGGGTGGTGGTATTAT+GGG - chr7.2:72275902-72275921 MS.gene044819:intron 45.0%
! AGGCCAAAGCAATTTGGGAT+CGG - chr7.2:72273794-72273813 MS.gene044819:intron 45.0%
! GAACTACCTTGATGGCTTCT+AGG + chr7.2:72275750-72275769 None:intergenic 45.0%
! GACTGTTTTGCCCTCAGATT+CGG + chr7.2:72275275-72275294 None:intergenic 45.0%
! TCCAGCTTTGTGCAGAAAGA+TGG - chr7.2:72275520-72275539 MS.gene044819:intron 45.0%
! TTTTCAGAACAAGGCACAGC+TGG - chr7.2:72275451-72275470 MS.gene044819:intron 45.0%
ACCCAATTGAGCTCGTTGTC+TGG - chr7.2:72275495-72275514 MS.gene044819:intron 50.0%
AGCCAGACAACGAGCTCAAT+TGG + chr7.2:72275500-72275519 None:intergenic 50.0%
CCACCGATCCCAAATTGCTT+TGG + chr7.2:72273800-72273819 None:intergenic 50.0%
CTAAGACGGTGCAGATTCAG+AGG - chr7.2:72273864-72273883 MS.gene044819:CDS 50.0%
CTCTGAATCTGCACCGTCTT+AGG + chr7.2:72273866-72273885 None:intergenic 50.0%
GAAAACAGGAAGAAGTGGGG+TGG - chr7.2:72275890-72275909 MS.gene044819:intron 50.0%
GCCAGACAACGAGCTCAATT+GGG + chr7.2:72275499-72275518 None:intergenic 50.0%
GTCAAGGGCAAAGCACGTTT+GGG - chr7.2:72275560-72275579 MS.gene044819:intron 50.0%
GTGAACTGGTTAAGAGCAGG+TGG + chr7.2:72273923-72273942 None:intergenic 50.0%
TGTCAAGGGCAAAGCACGTT+TGG - chr7.2:72275559-72275578 MS.gene044819:intron 50.0%
TTCTTCTTCGCTGCTGCAAC+TGG + chr7.2:72273737-72273756 None:intergenic 50.0%
TTTGCCCTCAGATTCGGCTT+GGG + chr7.2:72275269-72275288 None:intergenic 50.0%
! CCAAAGCAATTTGGGATCGG+TGG - chr7.2:72273797-72273816 MS.gene044819:intron 50.0%
! GAAGTGGGGTGGTGGTATTA+TGG - chr7.2:72275901-72275920 MS.gene044819:intron 50.0%
! TTTTGCCCTCAGATTCGGCT+TGG + chr7.2:72275270-72275289 None:intergenic 50.0%
AACAGGAAGAAGTGGGGTGG+TGG - chr7.2:72275893-72275912 MS.gene044819:intron 55.0%
TGTCCTCAGGCCTGTACTTG+AGG + chr7.2:72275213-72275232 None:intergenic 55.0%
AAGGGCCCAAGCCGAATCTG+AGG - chr7.2:72275261-72275280 MS.gene044819:intron 60.0%
AGGGCCCAAGCCGAATCTGA+GGG - chr7.2:72275262-72275281 MS.gene044819:intron 60.0%
GCTCCTCAAGTACAGGCCTG+AGG - chr7.2:72275207-72275226 MS.gene044819:intron 60.0%
TTACAGGCACCAAAGCGCGG+TGG - chr7.2:72273704-72273723 MS.gene044819:CDS 60.0%
! GGTGCTTTTCCACCGCGCTT+TGG + chr7.2:72273716-72273735 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 72273603 72275997 72273603 ID=MS.gene044819
chr7.2 mRNA 72273603 72275997 72273603 ID=MS.gene044819.t1;Parent=MS.gene044819
chr7.2 exon 72275995 72275997 72275995 ID=MS.gene044819.t1.exon1;Parent=MS.gene044819.t1
chr7.2 CDS 72275995 72275997 72275995 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
chr7.2 exon 72275635 72275890 72275635 ID=MS.gene044819.t1.exon2;Parent=MS.gene044819.t1
chr7.2 CDS 72275635 72275890 72275635 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
chr7.2 exon 72274243 72274412 72274243 ID=MS.gene044819.t1.exon3;Parent=MS.gene044819.t1
chr7.2 CDS 72274243 72274412 72274243 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
chr7.2 exon 72274014 72274142 72274014 ID=MS.gene044819.t1.exon4;Parent=MS.gene044819.t1
chr7.2 CDS 72274014 72274142 72274014 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
chr7.2 exon 72273838 72273930 72273838 ID=MS.gene044819.t1.exon5;Parent=MS.gene044819.t1
chr7.2 CDS 72273838 72273930 72273838 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
chr7.2 exon 72273603 72273734 72273603 ID=MS.gene044819.t1.exon6;Parent=MS.gene044819.t1
chr7.2 CDS 72273603 72273734 72273603 ID=cds.MS.gene044819.t1;Parent=MS.gene044819.t1
Gene Sequence

>MS.gene044819

ATGGTAACCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTGAACATAGATCTTCATAATTTTAGCTTATAGCTTATTCTGAAACGCGATTATCTTTATTATTTACAGGCACCAAAGCGCGGTGGAAAAGCACCAGTTGCAGCAGCGAAGAAGAATACAGCACTGAAAGTGGTGAACCCACTTTTTGAGAAGAGGCCAAAGCAATTTGGGATCGGTGGTGCTTTGCCACCAAAGAGAGATTTGACAAGGTTTGTGAAATGGCCTAAGACGGTGCAGATTCAGAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCTGCTCTTAACCAGTTCACTAAGACACTCGATAAAAATCTCGGTAATTATTCTTAATTAGCTCATTTGTTTATAAAATGGTGATTATGTTTTTAGATTTGGTTTTAATTTGGTGTTTATGTGTAATGCTTTAATGGGTTGTTATTAATTATTAAAATTTGTGTTTAATTGGCATATGGTCTTAGTTTGGTGTTTCTGTGAAATGTTTCAATGTTTGATCAATAAAATTTAGGTTTATTCATATTAGACATATTTTAGTTTAATATTTTGTTGCTATTGTTATAGATTAATTGGGTTATTATTGTTTAAAATAAGGTAGTGCTGTCTGAGTTTTTGATATTGTATGACTTGTTGTTTGTATGTTAATTTTTATTTTGATTGTGTTTAGCTGTAGTTTGTTTATTATGTTGAGTGCTTGGAAATGGTATTTGATATGTGTAATGGGAGAAGCTTGAGAGATTTTAATTTAATTGATTTAATTGATATGGGCTTGCTGAAAGTGTAACTATGATTTTAAATTTAGTTTTGATTTCGTGTTAATGTGAAATGGTTTAATTGGGTGGTTGTTAAAATTTGGGTATAATAATAGTCAACATGTTGAAGTTTCAATTTGTTGTTTTTGTTTCTAAGATATTGTTGAAGTTTCATTTCTTTGTTCTGGGTTTTTTACACAGTTCAAGTTTCATTTTGTTCTTTTTTAAGATAAGGGCTCTCAAGACTGTTTGATATTGTATTTGACTCTTTATTGTGTTTAGCTCTAATTTGTTTATTTTGTCTATTGCTTGGATAGTATGTGATAGTTTGATGTAATAGCTCTAATTATAAACTCTTTATTGTGTTTAGCTCTAATTTGTTTATTTTGTCTATTGCTTGGATAGTATGTGATAGTTTGGTGTAATAGCTCTAATTTGTTTATTTTATCGATTGCATGGAAATAGTATATGATAGTTTGGACTTTGGAGTAATGGTAGGAAGATTTAGAGATGTTAGTTTAAATTGTTTTGGAACATGTTGGTTCATGATCTGTGTTCTGTTACATGATCCGAAGACTATCGTATTTGTGATGCCCGTCTTTTGTTTTTGATTGGTATGTTGTTTTGACTATGACTATTGAAGGTTCTGTATGGATTGTTTTGTGATTGTTGTATTGTTTCGACTATGACCATTGTTTTGTGATTTTTGGATTATTGAAATCATGATTATTGGTTGTGAATAGCAACTGCTTGTAGTTTGTGCTCATCGATTTGTTTTAATGTCATATGCAGCAACAAACCTTTTCAAGATGCTCCTCAAGTACAGGCCTGAGGACAAAGCTGAAAAGAAGGAACGTCTCTTGAAAAGGGCCCAAGCCGAATCTGAGGGCAAAACAGTCGAGACAAAGAAGCCTATTAATGTGAAATATGGACTCAACCATGTTACCTATCTTATTGAGCAGGTACTGTGCCTTTTGTTTATATGAACAAGTATCCATACTCTCATACTCGTACGTCTTACTCTAGTGATTTATTACTAACTGTAACTTGTGGCTTTTTCAGAACAAGGCACAGCTGGTCGTGATTGCTCACGATGTCGACCCAATTGAGCTCGTTGTCTGGCTTCCAGCTTTGTGCAGAAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAAGCACGTTTGGGAACAGTAAGTATTGTCACATAGTTCCATAGAATTTTCACCTGTGAATTTATAATTTGTGACTAATTTAGTTGATGTGTATTTTGCAGATTGTTCACAAGAAAACTGCTTCCGTTTTGTGCTTGACAACCGTCAAGAATGAAGACAAAATGGAATTCAGCAGAATCCTAGAAGCCATCAAGGTAGTTCAAACTTGAGATTTGATTGTTCATTTTTTGTTTTACATACTCCGATAGTTCAATAAAATTAACCATTTCTGTTCGTTTTTTACCTTCTATTTTTCAGGCTAACTTTAACGACAAATTTGAGGAAAACAGGAAGAAGTGGGGTGGTGGTATTATGGGTTCCAAATCTCAAGCGAAAACAAAGGCCAAAGAAAGACTCATTGCCAAGGAAGCTGCTCAAAGAATGACCTAG
Protein sequence

>MS.gene044819.t1

MAPKRGGKAPVAAAKKNTALKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAESEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKFEENRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT