AlfalfaGEDB | MS.gene90945

M. sativa cultivar XinJiangDaYe / MS.gene90945

KEGG: K02936
GO: GO:0005575 GO:0008150 GO:0022613 GO:0032991 GO:0042254 GO:0044085 GO:0071840 GO:1990904
PFAM: PF01248.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90945.t1	GAU50913.1	93.6	281	18	0	4	284	33	313	8.70E-139	503.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90945.t1	Q9LZH9	88.4	258	27	1	26	283	1	255	8.0e-125	448.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90945.t1	A0A2Z6P7X9	93.6	281	18	0	4	284	33	313	6.3e-139	503.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049387	MS.gene90945	0.806676	7.33E-50	-1.69E-46
MS.gene050134	MS.gene90945	0.850567	1.56E-60	-1.69E-46
MS.gene050791	MS.gene90945	0.840747	7.22E-58	-1.69E-46
MS.gene052664	MS.gene90945	0.826322	2.89E-54	-1.69E-46
MS.gene053224	MS.gene90945	0.847769	9.37E-60	-1.69E-46
MS.gene057272	MS.gene90945	0.8617	8.53E-64	-1.69E-46
MS.gene057643	MS.gene90945	0.858681	6.97E-63	-1.69E-46
MS.gene059878	MS.gene90945	0.802571	5.27E-49	-1.69E-46
MS.gene060483	MS.gene90945	0.813289	2.76E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene41329	MS.gene90945	PPI
MS.gene059878	MS.gene90945	PPI
MS.gene066163	MS.gene90945	PPI
MS.gene90945	MS.gene044819	PPI
MS.gene040581	MS.gene90945	PPI
MS.gene90945	MS.gene041557	PPI
MS.gene90945	MS.gene64512	PPI
MS.gene90957	MS.gene90945	PPI
MS.gene073324	MS.gene90945	PPI
MS.gene75537	MS.gene90945	PPI
MS.gene000714	MS.gene90945	PPI
MS.gene81068	MS.gene90945	PPI
MS.gene031378	MS.gene90945	PPI
MS.gene90945	MS.gene057738	PPI
MS.gene003501	MS.gene90945	PPI
MS.gene90945	MS.gene060923	PPI
MS.gene57660	MS.gene90945	PPI
MS.gene90945	MS.gene039110	PPI
MS.gene53720	MS.gene90945	PPI
MS.gene90945	MS.gene035331	PPI
MS.gene065652	MS.gene90945	PPI
MS.gene066348	MS.gene90945	PPI
MS.gene42324	MS.gene90945	PPI
MS.gene050985	MS.gene90945	PPI
MS.gene90945	MS.gene63721	PPI
MS.gene90945	MS.gene52097	PPI
MS.gene064682	MS.gene90945	PPI
MS.gene70551	MS.gene90945	PPI
MS.gene96312	MS.gene90945	PPI
MS.gene061905	MS.gene90945	PPI
MS.gene045180	MS.gene90945	PPI
MS.gene90945	MS.gene90360	PPI
MS.gene020215	MS.gene90945	PPI
MS.gene061835	MS.gene90945	PPI
MS.gene92970	MS.gene90945	PPI
MS.gene035396	MS.gene90945	PPI
MS.gene90945	MS.gene77392	PPI
MS.gene018599	MS.gene90945	PPI
MS.gene047734	MS.gene90945	PPI
MS.gene066300	MS.gene90945	PPI
MS.gene90945	MS.gene25010	PPI
MS.gene39294	MS.gene90945	PPI
MS.gene059880	MS.gene90945	PPI
MS.gene003492	MS.gene90945	PPI
MS.gene069038	MS.gene90945	PPI
MS.gene88081	MS.gene90945	PPI
MS.gene90945	MS.gene001917	PPI
MS.gene037902	MS.gene90945	PPI
MS.gene90945	MS.gene000480	PPI
MS.gene90945	MS.gene067072	PPI
MS.gene010453	MS.gene90945	PPI
MS.gene43350	MS.gene90945	PPI
MS.gene86675	MS.gene90945	PPI
MS.gene90945	MS.gene066301	PPI
MS.gene014498	MS.gene90945	PPI
MS.gene95644	MS.gene90945	PPI
MS.gene90945	MS.gene014499	PPI
MS.gene90945	MS.gene022752	PPI
MS.gene012333	MS.gene90945	PPI
MS.gene90945	MS.gene69196	PPI
MS.gene09845	MS.gene90945	PPI
MS.gene036487	MS.gene90945	PPI
MS.gene52105	MS.gene90945	PPI
MS.gene057730	MS.gene90945	PPI
MS.gene018553	MS.gene90945	PPI
MS.gene59319	MS.gene90945	PPI
MS.gene90954	MS.gene90945	PPI
MS.gene99779	MS.gene90945	PPI
MS.gene08488	MS.gene90945	PPI
MS.gene012331	MS.gene90945	PPI
MS.gene063366	MS.gene90945	PPI
MS.gene029547	MS.gene90945	PPI
MS.gene45646	MS.gene90945	PPI
MS.gene060216	MS.gene90945	PPI
MS.gene003490	MS.gene90945	PPI
MS.gene041623	MS.gene90945	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90945.t1	MTR_4g074260	99.614	259	1	0	26	284	1	259	0.0	521
MS.gene90945.t1	MTR_7g027235	93.077	260	17	1	26	284	1	260	5.67e-178	491

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90945.t1	AT3G62870	88.031	259	28	1	26	284	1	256	8.14e-170	470
MS.gene90945.t1	AT2G47610	87.552	241	30	0	44	284	17	257	6.97e-161	447

Find 88 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGTCTTGGCTTGGGATT+TGG	0.209141	4.2:+34468817	None:intergenic
AGGCCATACTTCACATTAAT+AGG	0.264776	4.2:+34469438	None:intergenic
CTTTGCCTTGGTCTTGGCTT+GGG	0.278418	4.2:+34468811	None:intergenic
CAGGGTCCTAGAGGCGATTA+AGG	0.309642	4.2:-34468991	MS.gene90945:intron
CCTTTCCTTTGCCTTGGTCT+TGG	0.313711	4.2:+34468805	None:intergenic
CTTCGGCCACTTCACGAATC+TGG	0.319581	4.2:+34470492	None:intergenic
CCTTTGCCTTGGTCTTGGCT+TGG	0.320697	4.2:+34468810	None:intergenic
GAGAAGCGTCCAAAGCAATT+TGG	0.321546	4.2:-34470550	MS.gene90945:CDS
TTCTTCTTTGAAGCTGCAAC+TGG	0.338108	4.2:+34470697	None:intergenic
TTGCCCTTAACAATACAGTA+TGG	0.340642	4.2:+34469192	None:intergenic
CATTCTCTGGGCAGCCTCCT+TGG	0.347883	4.2:+34468775	None:intergenic
CCTCCAATTCCAAATTGCTT+TGG	0.359017	4.2:+34470541	None:intergenic
AAGCCTATTAATGTGAAGTA+TGG	0.361147	4.2:-34469441	MS.gene90945:CDS
CGTCCAAAGCAATTTGGAAT+TGG	0.369614	4.2:-34470544	MS.gene90945:CDS
TTCTTCTCAGCCTTGTCCTC+AGG	0.377096	4.2:+34469522	None:intergenic
CTCTGCACCTGAACGTTCTT+CGG	0.382996	4.2:+34470475	None:intergenic
GAAGTGGGGTGGTGGAATCA+TGG	0.397393	4.2:-34468843	MS.gene90945:CDS
AATCCCATACTGTATTGTTA+AGG	0.413635	4.2:-34469196	MS.gene90945:CDS
AATAAGCCTTTCCTTTGCCT+TGG	0.418296	4.2:+34468799	None:intergenic
TCTGGCTTCCAGCCTTGTGC+AGG	0.421984	4.2:-34469227	MS.gene90945:CDS
ACAACTCCTAGGTCATTCTC+TGG	0.422899	4.2:+34468762	None:intergenic
TCCATCTTCCTGCACAAGGC+TGG	0.428911	4.2:+34469219	None:intergenic
AAGGGCTCAGGCAGAGGCTG+AGG	0.430646	4.2:-34469484	MS.gene90945:CDS
TACAGGAAGAAGTGGGGTGG+TGG	0.431668	4.2:-34468851	MS.gene90945:CDS
TCCAGCCTTGTGCAGGAAGA+TGG	0.436588	4.2:-34469220	MS.gene90945:CDS
ACCCCATTGAATTAGTTGTC+TGG	0.442276	4.2:-34469245	MS.gene90945:CDS
AGCCAGACAACTAATTCAAT+GGG	0.443985	4.2:+34469243	None:intergenic
TGAGGAGTACAGGAAGAAGT+GGG	0.451890	4.2:-34468858	MS.gene90945:CDS
ATCCCATACTGTATTGTTAA+GGG	0.456742	4.2:-34469195	MS.gene90945:CDS
TATAAAATGGGACTCCAACT+AGG	0.466994	4.2:-34470915	None:intergenic
AAGACAAAATGGAGTTCAGC+AGG	0.470262	4.2:-34469010	MS.gene90945:CDS
ATGAGGAGTACAGGAAGAAG+TGG	0.472066	4.2:-34468859	MS.gene90945:CDS
CCAAAGCAATTTGGAATTGG+AGG	0.482647	4.2:-34470541	MS.gene90945:CDS
CATGAGCAATCACGACAAGC+TGG	0.488943	4.2:+34469274	None:intergenic
TCAAGATACTTCTGAAGTAC+AGG	0.489642	4.2:-34469545	MS.gene90945:CDS
TTTGAAAAGGGCTCAGGCAG+AGG	0.490294	4.2:-34469490	MS.gene90945:CDS
AAGTGGGGTGGTGGAATCAT+GGG	0.491130	4.2:-34468842	MS.gene90945:CDS
AAGCCAGACAACTAATTCAA+TGG	0.495839	4.2:+34469242	None:intergenic
TGAGGACAAGGCTGAGAAGA+AGG	0.500213	4.2:-34469520	MS.gene90945:CDS
TTAGTGAACTGGTTCAAAGC+TGG	0.502229	4.2:+34470415	None:intergenic
GAAGTGGCCGAAGAACGTTC+AGG	0.510705	4.2:-34470482	MS.gene90945:CDS
ATGACAAGTATGAGGAGTAC+AGG	0.517239	4.2:-34468868	MS.gene90945:CDS
AATCTGGTCAAATCCCTCTT+CGG	0.518321	4.2:+34470508	None:intergenic
ATAAAATGGGACTCCAACTA+GGG	0.525396	4.2:-34470914	None:intergenic
GAAGTACAGGCCTGAGGACA+AGG	0.533130	4.2:-34469532	MS.gene90945:CDS
ACAACAAACTTACACTTCCT+AGG	0.547646	4.2:+34469163	None:intergenic
AGGTGCATTGCCACCGAAGA+GGG	0.550648	4.2:-34470521	MS.gene90945:CDS
TGCCCTTAACAATACAGTAT+GGG	0.553243	4.2:+34469193	None:intergenic
TTTGGACGCTTCTCAAACAG+CGG	0.554899	4.2:+34470559	None:intergenic
TTGGACGCTTCTCAAACAGC+GGG	0.558308	4.2:+34470560	None:intergenic
CAAACTTACACTTCCTAGGC+GGG	0.561796	4.2:+34469167	None:intergenic
ATTTGACCAGATTCGTGAAG+TGG	0.563086	4.2:-34470498	MS.gene90945:CDS
AAATTTCAATGACAAGTATG+AGG	0.565347	4.2:-34468876	MS.gene90945:CDS
AGCATTAGCACCAGCAGCAA+TGG	0.566182	4.2:-34470853	MS.gene90945:intron
GTGAACTGGTTCAAAGCTGG+TGG	0.574137	4.2:+34470418	None:intergenic
TTCAGGTGCAGAGGAAGAAG+AGG	0.574820	4.2:-34470465	MS.gene90945:CDS
AGGGCTCAGGCAGAGGCTGA+GGG	0.575749	4.2:-34469483	MS.gene90945:CDS
ATGCCACCTTAATCGCCTCT+AGG	0.580251	4.2:+34468985	None:intergenic
ATGAGCAATCACGACAAGCT+GGG	0.581861	4.2:+34469275	None:intergenic
GTTAAGGGCAAGGCCCGCCT+AGG	0.589576	4.2:-34469180	MS.gene90945:CDS
AGTATACGCACCATTGCTGC+TGG	0.591788	4.2:+34470843	None:intergenic
CGAAGAACGTTCAGGTGCAG+AGG	0.592402	4.2:-34470474	MS.gene90945:CDS
CCAAGCCAAGACCAAGGCAA+AGG	0.598075	4.2:-34468810	MS.gene90945:CDS
GATTTCCATCTTCCTGCACA+AGG	0.600419	4.2:+34469215	None:intergenic
ACGCTTCTCAAACAGCGGGT+TGG	0.601848	4.2:+34470564	None:intergenic
ATACTGTATTGTTAAGGGCA+AGG	0.604440	4.2:-34469190	MS.gene90945:CDS
TGAGGTAGGTAACATGATTG+AGG	0.604638	4.2:+34469418	None:intergenic
ACAAGGCTGAGAAGAAGGAG+AGG	0.612342	4.2:-34469515	MS.gene90945:CDS
AAAGGAAAGGCTTATTGCCA+AGG	0.613232	4.2:-34468792	MS.gene90945:CDS
TGTTACCTACCTCATCGAGC+AGG	0.615302	4.2:-34469409	MS.gene90945:intron
GGCTGCCCAGAGAATGACCT+AGG	0.616298	4.2:-34468768	None:intergenic
AAGTATCTTGAACAAGCTTG+TGG	0.617064	4.2:+34469557	None:intergenic
CCAAGACCAAGGCAAAGGAA+AGG	0.622185	4.2:-34468805	MS.gene90945:CDS
GAGTACAGGAAGAAGTGGGG+TGG	0.625879	4.2:-34468854	MS.gene90945:CDS
GAGGAGTACAGGAAGAAGTG+GGG	0.627370	4.2:-34468857	MS.gene90945:CDS
CTGGTCAAATCCCTCTTCGG+TGG	0.631531	4.2:+34470511	None:intergenic
GGAGTTCAGCAGGGTCCTAG+AGG	0.633517	4.2:-34469000	MS.gene90945:CDS
GAGGTGCATTGCCACCGAAG+AGG	0.649300	4.2:-34470522	MS.gene90945:CDS
CAACTCCTAGGTCATTCTCT+GGG	0.652662	4.2:+34468763	None:intergenic
GGAAAGGCTTATTGCCAAGG+AGG	0.665686	4.2:-34468789	MS.gene90945:CDS
CAAATCCCAAGCCAAGACCA+AGG	0.672977	4.2:-34468816	MS.gene90945:CDS
ACAAACTTACACTTCCTAGG+CGG	0.677034	4.2:+34469166	None:intergenic
GAAAGACAACCTGCTCGATG+AGG	0.683651	4.2:+34469400	None:intergenic
GACAACCTGCTCGATGAGGT+AGG	0.683860	4.2:+34469404	None:intergenic
AGACAAAATGGAGTTCAGCA+GGG	0.687168	4.2:-34469009	MS.gene90945:CDS
GCTAATGCTCTGTGTCTGTG+CGG	0.698939	4.2:+34470867	None:intergenic
ACTTCTGAAGTACAGGCCTG+AGG	0.703947	4.2:-34469538	MS.gene90945:CDS
GCCAGACAACTAATTCAATG+GGG	0.748421	4.2:+34469244	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAAATTATTGTAATGTT+TGG	-	chr4.2:34469311-34469330	MS.gene90945:intron	10.0%
!!!	TTTTTGTAATATGTTAATTA+TGG	-	chr4.2:34469379-34469398	MS.gene90945:intron	10.0%
!!	GTAAATTGTAAAATTAATAC+AGG	-	chr4.2:34469401-34469420	MS.gene90945:intron	15.0%
!!	AATCAGTATATTGTTATATC+AGG	+	chr4.2:34470032-34470051	None:intergenic	20.0%
!!	ATAAAACATCTCAGTTTAAA+TGG	+	chr4.2:34470764-34470783	None:intergenic	20.0%
!!	ATCAGTATATTGTTATATCA+GGG	+	chr4.2:34470031-34470050	None:intergenic	20.0%
!!	CAGTAAAATAACAAATTAGA+AGG	+	chr4.2:34470334-34470353	None:intergenic	20.0%
!!	GTAAAATTAATACAGGATTT+CGG	-	chr4.2:34469408-34469427	MS.gene90945:intron	20.0%
!!	TAAATAGTAGAGAACAAAAA+TGG	+	chr4.2:34470731-34470750	None:intergenic	20.0%
!!	TGTTAAAAATGAAGACAAAA+TGG	-	chr4.2:34470657-34470676	MS.gene90945:intron	20.0%
!!	TTCAGTCATAAATCATATAT+AGG	+	chr4.2:34470551-34470570	None:intergenic	20.0%
!!!	AGTTATTTCAAAAGCTTAAA+TGG	+	chr4.2:34469715-34469734	None:intergenic	20.0%
!!!	GTTATTTCAAAAGCTTAAAT+GGG	+	chr4.2:34469714-34469733	None:intergenic	20.0%
!!!	TTTTATGTTGGTTTTATTTC+AGG	-	chr4.2:34470778-34470797	MS.gene90945:intron	20.0%
!	AAATTTCAATGACAAGTATG+AGG	-	chr4.2:34470802-34470821	MS.gene90945:intron	25.0%
!	AGTTGAAAACAAAATTAAGC+AGG	-	chr4.2:34469576-34469595	MS.gene90945:intron	25.0%
!	ATATCAATCTACCATTTCAT+AGG	+	chr4.2:34469838-34469857	None:intergenic	25.0%
!	ATTCTATGATTTCATTGCTT+TGG	-	chr4.2:34469792-34469811	MS.gene90945:intron	25.0%
!	CGTTTAACAATTATTCGTTA+TGG	-	chr4.2:34469965-34469984	MS.gene90945:intron	25.0%
!	GTTGAAAACAAAATTAAGCA+GGG	-	chr4.2:34469577-34469596	MS.gene90945:intron	25.0%
!	TTTATGACTGAATTGAATTC+AGG	-	chr4.2:34470559-34470578	MS.gene90945:CDS	25.0%
!!	TAAACTGAGATGTTTTATGT+TGG	-	chr4.2:34470766-34470785	MS.gene90945:intron	25.0%
!!!	GTATTTGTTTTCAAATTTGC+AGG	-	chr4.2:34469082-34469101	MS.gene90945:intron	25.0%
!!!	TTTGTCTTCATTTTTAACAG+TGG	+	chr4.2:34470656-34470675	None:intergenic	25.0%
	AAGCCTATTAATGTGAAGTA+TGG	-	chr4.2:34470237-34470256	MS.gene90945:intron	30.0%
	AATCCCATACTGTATTGTTA+AGG	-	chr4.2:34470482-34470501	MS.gene90945:CDS	30.0%
	ATCCCATACTGTATTGTTAA+GGG	-	chr4.2:34470483-34470502	MS.gene90945:CDS	30.0%
	CTTATGCAATAAGCTTCAAA+TGG	+	chr4.2:34469609-34469628	None:intergenic	30.0%
	GTTATGGTTATATTAGAGTC+TGG	-	chr4.2:34469981-34470000	MS.gene90945:intron	30.0%
	TAATCTCTCTACACTTAAAC+AGG	-	chr4.2:34470594-34470613	MS.gene90945:intron	30.0%
!	AACAAAATTAAGCAGGGTTT+TGG	-	chr4.2:34469583-34469602	MS.gene90945:intron	30.0%
!	GAGGCATTACTTTATTAGTT+TGG	-	chr4.2:34470003-34470022	MS.gene90945:intron	30.0%
!	GTAGATAAGCTTTTTATCCA+AGG	+	chr4.2:34469434-34469453	None:intergenic	30.0%
!	TGATAAGTACTGTGAAGAAA+TGG	+	chr4.2:34468889-34468908	None:intergenic	30.0%
!	TTCATCGTGTTTGATTTCTT+AGG	-	chr4.2:34468935-34468954	MS.gene90945:intron	30.0%
!	TTTGAAGCTTATTGCATAAG+TGG	-	chr4.2:34469609-34469628	MS.gene90945:intron	30.0%
!!!	GATCTGATTTTGATTGCTAT+AGG	-	chr4.2:34469333-34469352	MS.gene90945:intron	30.0%
	AAAACCCTCGACAAAAATCT+AGG	-	chr4.2:34469284-34469303	MS.gene90945:CDS	35.0%
	AAATGAGATTGGAATTGACG+CGG	+	chr4.2:34469019-34469038	None:intergenic	35.0%
	AACGAAGATCTGAATTGAGA+TGG	+	chr4.2:34468861-34468880	None:intergenic	35.0%
	AAGCCAGACAACTAATTCAA+TGG	+	chr4.2:34470439-34470458	None:intergenic	35.0%
	AAGTATCTTGAACAAGCTTG+TGG	+	chr4.2:34470124-34470143	None:intergenic	35.0%
	ACAACAAACTTACACTTCCT+AGG	+	chr4.2:34470518-34470537	None:intergenic	35.0%
	AGCCAGACAACTAATTCAAT+GGG	+	chr4.2:34470438-34470457	None:intergenic	35.0%
	AGGCCATACTTCACATTAAT+AGG	+	chr4.2:34470243-34470262	None:intergenic	35.0%
	ATACTGTATTGTTAAGGGCA+AGG	-	chr4.2:34470488-34470507	MS.gene90945:CDS	35.0%
	ATGGTTATATTAGAGTCTGG+AGG	-	chr4.2:34469984-34470003	MS.gene90945:intron	35.0%
	ATTTCTTAGGCTCCCAAAAA+AGG	-	chr4.2:34468948-34468967	MS.gene90945:intron	35.0%
	GAAGGAAAAATCAGCAATCT+TGG	+	chr4.2:34470316-34470335	None:intergenic	35.0%
	TCGAAAGTCGTAAATGAGAT+TGG	+	chr4.2:34469030-34469049	None:intergenic	35.0%
	TGCCCTTAACAATACAGTAT+GGG	+	chr4.2:34470488-34470507	None:intergenic	35.0%
	TTGCCCTTAACAATACAGTA+TGG	+	chr4.2:34470489-34470508	None:intergenic	35.0%
!	AAACAGCAGCAGTTTTCTTA+TGG	+	chr4.2:34470624-34470643	None:intergenic	35.0%
!	ACTGGTTTCTTCCTATGAAA+TGG	-	chr4.2:34469824-34469843	MS.gene90945:intron	35.0%
!	GTTGCTTTCATAAGCTATCT+TGG	-	chr4.2:34469537-34469556	MS.gene90945:CDS	35.0%
!	GTTTTCAAATTTGCAGGAGA+AGG	-	chr4.2:34469088-34469107	MS.gene90945:intron	35.0%
!	TTGCTTTGGTTTCTTTCTAC+TGG	-	chr4.2:34469806-34469825	MS.gene90945:intron	35.0%
!!	TCAAGATACTTCTGAAGTAC+AGG	-	chr4.2:34470133-34470152	MS.gene90945:intron	35.0%
!!!	GGAGCTTTAACACCTTTTTT+GGG	+	chr4.2:34468963-34468982	None:intergenic	35.0%
!!!	TGGAGCTTTAACACCTTTTT+TGG	+	chr4.2:34468964-34468983	None:intergenic	35.0%
	AAAGGAAAGGCTTATTGCCA+AGG	-	chr4.2:34470886-34470905	MS.gene90945:CDS	40.0%
	AAGACAAAATGGAGTTCAGC+AGG	-	chr4.2:34470668-34470687	MS.gene90945:intron	40.0%
	AATAAGCCTTTCCTTTGCCT+TGG	+	chr4.2:34470882-34470901	None:intergenic	40.0%
	AATCTGGTCAAATCCCTCTT+CGG	+	chr4.2:34469173-34469192	None:intergenic	40.0%
	ACAAACTTACACTTCCTAGG+CGG	+	chr4.2:34470515-34470534	None:intergenic	40.0%
	ACCCCATTGAATTAGTTGTC+TGG	-	chr4.2:34470433-34470452	MS.gene90945:CDS	40.0%
	AGACAAAATGGAGTTCAGCA+GGG	-	chr4.2:34470669-34470688	MS.gene90945:intron	40.0%
	ATTTGACCAGATTCGTGAAG+TGG	-	chr4.2:34469180-34469199	MS.gene90945:CDS	40.0%
	CCTCCAATTCCAAATTGCTT+TGG	+	chr4.2:34469140-34469159	None:intergenic	40.0%
	GCCAGACAACTAATTCAATG+GGG	+	chr4.2:34470437-34470456	None:intergenic	40.0%
	TGAGGTAGGTAACATGATTG+AGG	+	chr4.2:34470263-34470282	None:intergenic	40.0%
	TTAATACAGGATTTCGGCCT+TGG	-	chr4.2:34469414-34469433	MS.gene90945:CDS	40.0%
!	ATGACAAGTATGAGGAGTAC+AGG	-	chr4.2:34470810-34470829	MS.gene90945:intron	40.0%
!	CCAAAGCAATTTGGAATTGG+AGG	-	chr4.2:34469137-34469156	MS.gene90945:intron	40.0%
!	CGTCCAAAGCAATTTGGAAT+TGG	-	chr4.2:34469134-34469153	MS.gene90945:intron	40.0%
!	CTCCAACTAGGGTTTTTCTT+CGG	-	chr4.2:34468775-34468794	MS.gene90945:CDS	40.0%
!	CTGACCTAGATTTTTGTCGA+GGG	+	chr4.2:34469291-34469310	None:intergenic	40.0%
!	GCTTTAAGCTACAACGTGTA+TGG	+	chr4.2:34469915-34469934	None:intergenic	40.0%
!	TCTGACCTAGATTTTTGTCG+AGG	+	chr4.2:34469292-34469311	None:intergenic	40.0%
!	TTAGTGAACTGGTTCAAAGC+TGG	+	chr4.2:34469266-34469285	None:intergenic	40.0%
!!	AGAAGGAGAGGCTTTTGAAA+AGG	-	chr4.2:34470175-34470194	MS.gene90945:intron	40.0%
!!	GAAGGAGAGGCTTTTGAAAA+GGG	-	chr4.2:34470176-34470195	MS.gene90945:intron	40.0%
!!	TTCTTCTTTGAAGCTGCAAC+TGG	+	chr4.2:34468984-34469003	None:intergenic	40.0%
!!!	AGAAGAGGATTTTGAAGCAG+AGG	-	chr4.2:34469228-34469247	MS.gene90945:CDS	40.0%
!!!	GATTTTGAAGCAGAGGTTGA+AGG	-	chr4.2:34469235-34469254	MS.gene90945:CDS	40.0%
	ATGAGCAATCACGACAAGCT+GGG	+	chr4.2:34470406-34470425	None:intergenic	45.0%
	CAAACTTACACTTCCTAGGC+GGG	+	chr4.2:34470514-34470533	None:intergenic	45.0%
	CTCCGAAGAAAAACCCTAGT+TGG	+	chr4.2:34468780-34468799	None:intergenic	45.0%
	GAATTGACGCGGTTACTTAC+AGG	+	chr4.2:34469008-34469027	None:intergenic	45.0%
	GATTTCCATCTTCCTGCACA+AGG	+	chr4.2:34470466-34470485	None:intergenic	45.0%
	TGCATGTGCTGCATAAATGC+TGG	-	chr4.2:34469767-34469786	MS.gene90945:intron	45.0%
	TTTGGACGCTTCTCAAACAG+CGG	+	chr4.2:34469122-34469141	None:intergenic	45.0%
!	ATGAGGAGTACAGGAAGAAG+TGG	-	chr4.2:34470819-34470838	MS.gene90945:intron	45.0%
!	TGAGGAGTACAGGAAGAAGT+GGG	-	chr4.2:34470820-34470839	MS.gene90945:intron	45.0%
!!	GAGAAGCGTCCAAAGCAATT+TGG	-	chr4.2:34469128-34469147	MS.gene90945:intron	45.0%
!!	TGTCGAGGGTTTTAGTGAAC+TGG	+	chr4.2:34469277-34469296	None:intergenic	45.0%
	ACAAGGCTGAGAAGAAGGAG+AGG	-	chr4.2:34470163-34470182	MS.gene90945:intron	50.0%
	AGCATTAGCACCAGCAGCAA+TGG	-	chr4.2:34468825-34468844	MS.gene90945:CDS	50.0%
	AGTATACGCACCATTGCTGC+TGG	+	chr4.2:34468838-34468857	None:intergenic	50.0%
	ATGCCACCTTAATCGCCTCT+AGG	+	chr4.2:34470696-34470715	None:intergenic	50.0%
	CAAATCCCAAGCCAAGACCA+AGG	-	chr4.2:34470862-34470881	MS.gene90945:CDS	50.0%
	CATGAGCAATCACGACAAGC+TGG	+	chr4.2:34470407-34470426	None:intergenic	50.0%
	CCAAGACCAAGGCAAAGGAA+AGG	-	chr4.2:34470873-34470892	MS.gene90945:CDS	50.0%
	CCTTTCCTTTGCCTTGGTCT+TGG	+	chr4.2:34470876-34470895	None:intergenic	50.0%
	CTCTGCACCTGAACGTTCTT+CGG	+	chr4.2:34469206-34469225	None:intergenic	50.0%
	GAAAGACAACCTGCTCGATG+AGG	+	chr4.2:34470281-34470300	None:intergenic	50.0%
	GCTAATGCTCTGTGTCTGTG+CGG	+	chr4.2:34468814-34468833	None:intergenic	50.0%
	GGAAAGGCTTATTGCCAAGG+AGG	-	chr4.2:34470889-34470908	MS.gene90945:CDS	50.0%
	TGAGGACAAGGCTGAGAAGA+AGG	-	chr4.2:34470158-34470177	MS.gene90945:intron	50.0%
	TGTTACCTACCTCATCGAGC+AGG	-	chr4.2:34470269-34470288	MS.gene90945:intron	50.0%
	TTCAGGTGCAGAGGAAGAAG+AGG	-	chr4.2:34469213-34469232	MS.gene90945:CDS	50.0%
	TTGGACGCTTCTCAAACAGC+GGG	+	chr4.2:34469121-34469140	None:intergenic	50.0%
	TTTGAAAAGGGCTCAGGCAG+AGG	-	chr4.2:34470188-34470207	MS.gene90945:intron	50.0%
!	GAGGAGTACAGGAAGAAGTG+GGG	-	chr4.2:34470821-34470840	MS.gene90945:intron	50.0%
!	GTGAACTGGTTCAAAGCTGG+TGG	+	chr4.2:34469263-34469282	None:intergenic	50.0%
!	TTCTTCTCAGCCTTGTCCTC+AGG	+	chr4.2:34470159-34470178	None:intergenic	50.0%
!!	AAGTGGGGTGGTGGAATCAT+GGG	-	chr4.2:34470836-34470855	MS.gene90945:intron	50.0%
!!	ACTTCTGAAGTACAGGCCTG+AGG	-	chr4.2:34470140-34470159	MS.gene90945:intron	50.0%
!!	CTTGGTCTTGGCTTGGGATT+TGG	+	chr4.2:34470864-34470883	None:intergenic	50.0%
!!	CTTTGCCTTGGTCTTGGCTT+GGG	+	chr4.2:34470870-34470889	None:intergenic	50.0%
!!	GAGGCTTTTGAAAAGGGCTC+AGG	-	chr4.2:34470182-34470201	MS.gene90945:intron	50.0%
	ACGCTTCTCAAACAGCGGGT+TGG	+	chr4.2:34469117-34469136	None:intergenic	55.0%
	AGGTGCATTGCCACCGAAGA+GGG	-	chr4.2:34469157-34469176	MS.gene90945:intron	55.0%
	CAGGGTCCTAGAGGCGATTA+AGG	-	chr4.2:34470687-34470706	MS.gene90945:intron	55.0%
	CCAAGCCAAGACCAAGGCAA+AGG	-	chr4.2:34470868-34470887	MS.gene90945:CDS	55.0%
	CGAAGAACGTTCAGGTGCAG+AGG	-	chr4.2:34469204-34469223	MS.gene90945:CDS	55.0%
	CTGGTCAAATCCCTCTTCGG+TGG	+	chr4.2:34469170-34469189	None:intergenic	55.0%
	CTTCGGCCACTTCACGAATC+TGG	+	chr4.2:34469189-34469208	None:intergenic	55.0%
	GAACAAGCTTGTGGCTGCAG+AGG	+	chr4.2:34470115-34470134	None:intergenic	55.0%
	GAAGTACAGGCCTGAGGACA+AGG	-	chr4.2:34470146-34470165	MS.gene90945:intron	55.0%
	GAAGTGGCCGAAGAACGTTC+AGG	-	chr4.2:34469196-34469215	MS.gene90945:CDS	55.0%
	GACAACCTGCTCGATGAGGT+AGG	+	chr4.2:34470277-34470296	None:intergenic	55.0%
	GAGTACAGGAAGAAGTGGGG+TGG	-	chr4.2:34470824-34470843	MS.gene90945:intron	55.0%
	GGTCCTAGAGGCGATTAAGG+TGG	-	chr4.2:34470690-34470709	MS.gene90945:intron	55.0%
	TACAGGAAGAAGTGGGGTGG+TGG	-	chr4.2:34470827-34470846	MS.gene90945:intron	55.0%
	TCCATCTTCCTGCACAAGGC+TGG	+	chr4.2:34470462-34470481	None:intergenic	55.0%
!	TCCAGCCTTGTGCAGGAAGA+TGG	-	chr4.2:34470458-34470477	MS.gene90945:CDS	55.0%
!!	CCTTTGCCTTGGTCTTGGCT+TGG	+	chr4.2:34470871-34470890	None:intergenic	55.0%
!!	GAAGTGGGGTGGTGGAATCA+TGG	-	chr4.2:34470835-34470854	MS.gene90945:intron	55.0%
	CATTCTCTGGGCAGCCTCCT+TGG	+	chr4.2:34470906-34470925	None:intergenic	60.0%
	GAGGTGCATTGCCACCGAAG+AGG	-	chr4.2:34469156-34469175	MS.gene90945:intron	60.0%
	GGAGTTCAGCAGGGTCCTAG+AGG	-	chr4.2:34470678-34470697	MS.gene90945:intron	60.0%
!	TCTGGCTTCCAGCCTTGTGC+AGG	-	chr4.2:34470451-34470470	MS.gene90945:CDS	60.0%
	AAGGGCTCAGGCAGAGGCTG+AGG	-	chr4.2:34470194-34470213	MS.gene90945:intron	65.0%
	AGGGCTCAGGCAGAGGCTGA+GGG	-	chr4.2:34470195-34470214	MS.gene90945:intron	65.0%
	GTTAAGGGCAAGGCCCGCCT+AGG	-	chr4.2:34470498-34470517	MS.gene90945:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	34468769	34470931	34468769	ID=MS.gene90945
chr4.2	mRNA	34468769	34470931	34468769	ID=MS.gene90945.t1;Parent=MS.gene90945
chr4.2	exon	34470854	34470931	34470854	ID=MS.gene90945.t1.exon1;Parent=MS.gene90945.t1
chr4.2	CDS	34470854	34470931	34470854	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34470693	34470743	34470693	ID=MS.gene90945.t1.exon2;Parent=MS.gene90945.t1
chr4.2	CDS	34470693	34470743	34470693	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34470395	34470596	34470395	ID=MS.gene90945.t1.exon3;Parent=MS.gene90945.t1
chr4.2	CDS	34470395	34470596	34470395	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34469410	34469579	34469410	ID=MS.gene90945.t1.exon4;Parent=MS.gene90945.t1
chr4.2	CDS	34469410	34469579	34469410	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34469176	34469304	34469176	ID=MS.gene90945.t1.exon5;Parent=MS.gene90945.t1
chr4.2	CDS	34469176	34469304	34469176	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34468992	34469084	34468992	ID=MS.gene90945.t1.exon6;Parent=MS.gene90945.t1
chr4.2	CDS	34468992	34469084	34468992	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1
chr4.2	exon	34468769	34468900	34468769	ID=MS.gene90945.t1.exon7;Parent=MS.gene90945.t1
chr4.2	CDS	34468769	34468900	34468769	ID=cds.MS.gene90945.t1;Parent=MS.gene90945.t1

Gene Sequence

>MS.gene90945

ATGGGACTCCAACTAGGGTTTTTCTTCGGAGAGTTTTCGTCACCGCACAGACACAGAGCATTAGCACCAGCAGCAATGGTGCGTATACTCCATCTCAATTCAGATCTTCGTTTATCTCCATTTCTTCACAGTACTTATCAATTTTTGTCTCTAATTAACGTTTATCTTCATCGTGTTTGATTTCTTAGGCTCCCAAAAAAGGTGTTAAAGCTCCAGTTGCAGCTTCAAAGAAGAAACCTGTAAGTAACCGCGTCAATTCCAATCTCATTTACGACTTTCGATTCATTTTTTGTATTGTTTTGAAAGTGAATTTGTATTTGTTTTCAAATTTGCAGGAGAAGGTTACCAACCCGCTGTTTGAGAAGCGTCCAAAGCAATTTGGAATTGGAGGTGCATTGCCACCGAAGAGGGATTTGACCAGATTCGTGAAGTGGCCGAAGAACGTTCAGGTGCAGAGGAAGAAGAGGATTTTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACTAAAACCCTCGACAAAAATCTAGGTCAGAAATAAATTATTGTAATGTTTGGATCTGATTTTGATTGCTATAGGAGTTATTTACGTGTTATTTGCAATTTTTGTAATATGTTAATTATGGTAAATTGTAAAATTAATACAGGATTTCGGCCTTGGATAAAAAGCTTATCTACAGCTAATAGCATAAGTGCTTATTTGTATAAGCTATTTCTATAGCAAAAGATAAAATAAAGTTCAATTATTTTTGTATATATAAGTTGCTTTCATAAGCTATCTTGGTGCTCTCAATGAAATAAGTTGAAAACAAAATTAAGCAGGGTTTTGGCCATTTGAAGCTTATTGCATAAGTGGTTATTATGATTATCAGCTATTTGTATAAACTAAAGTTAAGTTGTTTTTGTATAAGCTATTAGCTGTTTTGATAACTTCTCCCATTTAAGCTTTTGAAATAACTTATCAATGCTCATGAAATTAGCTTGATAACTTTGCATGTGCTGCATAAATGCTGGTAATTCTATGATTTCATTGCTTTGGTTTCTTTCTACTGGTTTCTTCCTATGAAATGGTAGATTGATATGCTGAGTATGCTGTTACTTTGACAGTTTTTGTTATCTCAAACGTTATTTTACTGCCATACACGTTGTAGCTTAAAGCACTGCTAAGCATTTTACTTGTTTGTTTTGACGTTTAACAATTATTCGTTATGGTTATATTAGAGTCTGGAGGCATTACTTTATTAGTTTGGTTCCCTGATATAACAATATACTGATTCTTTGTTCATTTTTGTTGCTTTATATTTAATGTGATTTTTTATCATCTTTGATTGTCGTACCTCTGCAGCCACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGACAAGGCTGAGAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAGGGCAAAACAGTTGAAACTAAGAAGCCTATTAATGTGAAGTATGGCCTCAATCATGTTACCTACCTCATCGAGCAGGTTGTCTTTCTGTCATGTTACTCCAAGATTGCTGATTTTTCCTTCTAATTTGTTATTTTACTGTGATATTGATGAATGACTGATTAAGCTTTATTTTCTTTACAGAATAAAGCCCAGCTTGTCGTGATTGCTCATGATGTCGACCCCATTGAATTAGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATCCCATACTGTATTGTTAAGGGCAAGGCCCGCCTAGGAAGTGTAAGTTTGTTGTGATTTGAATACCTATATATGATTTATGACTGAATTGAATTCAGGTAATGACTAATTTAATCTCTCTACACTTAAACAGGTTGTCCATAAGAAAACTGCTGCTGTTTTGTGCTTGACCACTGTTAAAAATGAAGACAAAATGGAGTTCAGCAGGGTCCTAGAGGCGATTAAGGTGGCATATAATTTTATTTCCATTTTTGTTCTCTACTATTTATATACTCTTGCCATTTAAACTGAGATGTTTTATGTTGGTTTTATTTCAGGCAAATTTCAATGACAAGTATGAGGAGTACAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAAGGCAAAGGAAAGGCTTATTGCCAAGGAGGCTGCCCAGAGAATGACCTAG

Protein sequence

>MS.gene90945.t1

MGLQLGFFFGEFSSPHRHRALAPAAMAPKKGVKAPVAASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQVQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSVVHKKTAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT