AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003492

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003492.t1 MTR_4g074260 99.614 259 1 0 26 284 1 259 0.0 521
MS.gene003492.t1 MTR_7g027235 93.077 260 17 1 26 284 1 260 5.67e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003492.t1 AT3G62870 88.031 259 28 1 26 284 1 256 8.14e-170 470
MS.gene003492.t1 AT2G47610 87.552 241 30 0 44 284 17 257 6.97e-161 447

Find 88 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTCTTGGCTTGGGATT+TGG 0.209141 4.3:+32818803 None:intergenic
AGGCCATACTTCACATTAAT+AGG 0.264776 4.3:+32819424 None:intergenic
CTTTGCCTTGGTCTTGGCTT+GGG 0.278418 4.3:+32818797 None:intergenic
CAGGGTCCTAGAGGCGATTA+AGG 0.309642 4.3:-32818977 MS.gene003492:intron
CCTTTCCTTTGCCTTGGTCT+TGG 0.313711 4.3:+32818791 None:intergenic
CTTCGGCCACTTCACGAATC+TGG 0.319581 4.3:+32820478 None:intergenic
CCTTTGCCTTGGTCTTGGCT+TGG 0.320697 4.3:+32818796 None:intergenic
GAGAAGCGTCCAAAGCAATT+TGG 0.321546 4.3:-32820536 MS.gene003492:CDS
TTCTTCTTTGAAGCTGCAAC+TGG 0.338108 4.3:+32820683 None:intergenic
TTGCCCTTAACAATACAGTA+TGG 0.340642 4.3:+32819178 None:intergenic
CATTCTCTGGGCAGCCTCCT+TGG 0.347883 4.3:+32818761 None:intergenic
CCTCCAATTCCAAATTGCTT+TGG 0.359017 4.3:+32820527 None:intergenic
AAGCCTATTAATGTGAAGTA+TGG 0.361147 4.3:-32819427 MS.gene003492:CDS
CGTCCAAAGCAATTTGGAAT+TGG 0.369614 4.3:-32820530 MS.gene003492:CDS
TTCTTCTCAGCCTTGTCCTC+AGG 0.377096 4.3:+32819508 None:intergenic
CTCTGCACCTGAACGTTCTT+CGG 0.382996 4.3:+32820461 None:intergenic
GAAGTGGGGTGGTGGAATCA+TGG 0.397393 4.3:-32818829 MS.gene003492:CDS
AATCCCATACTGTATTGTTA+AGG 0.413635 4.3:-32819182 MS.gene003492:CDS
AATAAGCCTTTCCTTTGCCT+TGG 0.418296 4.3:+32818785 None:intergenic
TCTGGCTTCCAGCCTTGTGC+AGG 0.421984 4.3:-32819213 MS.gene003492:CDS
ACAACTCCTAGGTCATTCTC+TGG 0.422899 4.3:+32818748 None:intergenic
TCCATCTTCCTGCACAAGGC+TGG 0.428911 4.3:+32819205 None:intergenic
AAGGGCTCAGGCAGAGGCTG+AGG 0.430646 4.3:-32819470 MS.gene003492:CDS
TACAGGAAGAAGTGGGGTGG+TGG 0.431668 4.3:-32818837 MS.gene003492:CDS
TCCAGCCTTGTGCAGGAAGA+TGG 0.436588 4.3:-32819206 MS.gene003492:CDS
ACCCCATTGAATTAGTTGTC+TGG 0.442276 4.3:-32819231 MS.gene003492:CDS
AGCCAGACAACTAATTCAAT+GGG 0.443985 4.3:+32819229 None:intergenic
TGAGGAGTACAGGAAGAAGT+GGG 0.451890 4.3:-32818844 MS.gene003492:CDS
ATCCCATACTGTATTGTTAA+GGG 0.456742 4.3:-32819181 MS.gene003492:CDS
TATAAAATGGGACTCCAACT+AGG 0.466994 4.3:-32820901 None:intergenic
AAGACAAAATGGAGTTCAGC+AGG 0.470262 4.3:-32818996 MS.gene003492:CDS
ATGAGGAGTACAGGAAGAAG+TGG 0.472066 4.3:-32818845 MS.gene003492:CDS
CCAAAGCAATTTGGAATTGG+AGG 0.482647 4.3:-32820527 MS.gene003492:CDS
CATGAGCAATCACGACAAGC+TGG 0.488943 4.3:+32819260 None:intergenic
TCAAGATACTTCTGAAGTAC+AGG 0.489642 4.3:-32819531 MS.gene003492:CDS
TTTGAAAAGGGCTCAGGCAG+AGG 0.490294 4.3:-32819476 MS.gene003492:CDS
AAGTGGGGTGGTGGAATCAT+GGG 0.491130 4.3:-32818828 MS.gene003492:CDS
AAGCCAGACAACTAATTCAA+TGG 0.495839 4.3:+32819228 None:intergenic
TGAGGACAAGGCTGAGAAGA+AGG 0.500213 4.3:-32819506 MS.gene003492:CDS
TTAGTGAACTGGTTCAAAGC+TGG 0.502229 4.3:+32820401 None:intergenic
GAAGTGGCCGAAGAACGTTC+AGG 0.510705 4.3:-32820468 MS.gene003492:CDS
ATGACAAGTATGAGGAGTAC+AGG 0.517239 4.3:-32818854 MS.gene003492:CDS
AATCTGGTCAAATCCCTCTT+CGG 0.518321 4.3:+32820494 None:intergenic
ATAAAATGGGACTCCAACTA+GGG 0.525396 4.3:-32820900 None:intergenic
GAAGTACAGGCCTGAGGACA+AGG 0.533130 4.3:-32819518 MS.gene003492:CDS
ACAACAAACTTACACTTCCT+AGG 0.547646 4.3:+32819149 None:intergenic
AGGTGCATTGCCACCGAAGA+GGG 0.550648 4.3:-32820507 MS.gene003492:CDS
TGCCCTTAACAATACAGTAT+GGG 0.553243 4.3:+32819179 None:intergenic
TTTGGACGCTTCTCAAACAG+CGG 0.554899 4.3:+32820545 None:intergenic
TTGGACGCTTCTCAAACAGC+GGG 0.558308 4.3:+32820546 None:intergenic
CAAACTTACACTTCCTAGGC+GGG 0.561796 4.3:+32819153 None:intergenic
ATTTGACCAGATTCGTGAAG+TGG 0.563086 4.3:-32820484 MS.gene003492:CDS
AAATTTCAATGACAAGTATG+AGG 0.565347 4.3:-32818862 MS.gene003492:CDS
AGCATTAGCACCAGCAGCAA+TGG 0.566182 4.3:-32820839 MS.gene003492:intron
GTGAACTGGTTCAAAGCTGG+TGG 0.574137 4.3:+32820404 None:intergenic
TTCAGGTGCAGAGGAAGAAG+AGG 0.574820 4.3:-32820451 MS.gene003492:CDS
AGGGCTCAGGCAGAGGCTGA+GGG 0.575749 4.3:-32819469 MS.gene003492:CDS
ATGCCACCTTAATCGCCTCT+AGG 0.580251 4.3:+32818971 None:intergenic
ATGAGCAATCACGACAAGCT+GGG 0.581861 4.3:+32819261 None:intergenic
GTTAAGGGCAAGGCCCGCCT+AGG 0.589576 4.3:-32819166 MS.gene003492:CDS
AGTATACGCACCATTGCTGC+TGG 0.591788 4.3:+32820829 None:intergenic
CGAAGAACGTTCAGGTGCAG+AGG 0.592402 4.3:-32820460 MS.gene003492:CDS
CCAAGCCAAGACCAAGGCAA+AGG 0.598075 4.3:-32818796 MS.gene003492:CDS
GATTTCCATCTTCCTGCACA+AGG 0.600419 4.3:+32819201 None:intergenic
ACGCTTCTCAAACAGCGGGT+TGG 0.601848 4.3:+32820550 None:intergenic
ATACTGTATTGTTAAGGGCA+AGG 0.604440 4.3:-32819176 MS.gene003492:CDS
TGAGGTAGGTAACATGATTG+AGG 0.604638 4.3:+32819404 None:intergenic
ACAAGGCTGAGAAGAAGGAG+AGG 0.612342 4.3:-32819501 MS.gene003492:CDS
AAAGGAAAGGCTTATTGCCA+AGG 0.613232 4.3:-32818778 MS.gene003492:CDS
TGTTACCTACCTCATCGAGC+AGG 0.615302 4.3:-32819395 MS.gene003492:intron
GGCTGCCCAGAGAATGACCT+AGG 0.616298 4.3:-32818754 None:intergenic
AAGTATCTTGAACAAGCTTG+TGG 0.617064 4.3:+32819543 None:intergenic
CCAAGACCAAGGCAAAGGAA+AGG 0.622185 4.3:-32818791 MS.gene003492:CDS
GAGTACAGGAAGAAGTGGGG+TGG 0.625879 4.3:-32818840 MS.gene003492:CDS
GAGGAGTACAGGAAGAAGTG+GGG 0.627370 4.3:-32818843 MS.gene003492:CDS
CTGGTCAAATCCCTCTTCGG+TGG 0.631531 4.3:+32820497 None:intergenic
GGAGTTCAGCAGGGTCCTAG+AGG 0.633517 4.3:-32818986 MS.gene003492:CDS
GAGGTGCATTGCCACCGAAG+AGG 0.649300 4.3:-32820508 MS.gene003492:CDS
CAACTCCTAGGTCATTCTCT+GGG 0.652662 4.3:+32818749 None:intergenic
GGAAAGGCTTATTGCCAAGG+AGG 0.665686 4.3:-32818775 MS.gene003492:CDS
CAAATCCCAAGCCAAGACCA+AGG 0.672977 4.3:-32818802 MS.gene003492:CDS
ACAAACTTACACTTCCTAGG+CGG 0.677034 4.3:+32819152 None:intergenic
GAAAGACAACCTGCTCGATG+AGG 0.683651 4.3:+32819386 None:intergenic
GACAACCTGCTCGATGAGGT+AGG 0.683860 4.3:+32819390 None:intergenic
AGACAAAATGGAGTTCAGCA+GGG 0.687168 4.3:-32818995 MS.gene003492:CDS
GCTAATGCTCTGTGTCTGTG+CGG 0.698939 4.3:+32820853 None:intergenic
ACTTCTGAAGTACAGGCCTG+AGG 0.703947 4.3:-32819524 MS.gene003492:CDS
GCCAGACAACTAATTCAATG+GGG 0.748421 4.3:+32819230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTATTGTAATGTT+TGG - chr4.3:32819297-32819316 MS.gene003492:intron 10.0%
!!! TTTTTGTAATATGTTAATTA+TGG - chr4.3:32819365-32819384 MS.gene003492:intron 10.0%
!! GTAAATTGTAAAATTAATAC+AGG - chr4.3:32819387-32819406 MS.gene003492:intron 15.0%
!! AATCAGTATATTGTTATATC+AGG + chr4.3:32820018-32820037 None:intergenic 20.0%
!! ATAAAACATCTCAGTTTAAA+TGG + chr4.3:32820750-32820769 None:intergenic 20.0%
!! ATCAGTATATTGTTATATCA+GGG + chr4.3:32820017-32820036 None:intergenic 20.0%
!! CAGTAAAATAACAAATTAGA+AGG + chr4.3:32820320-32820339 None:intergenic 20.0%
!! GTAAAATTAATACAGGATTT+CGG - chr4.3:32819394-32819413 MS.gene003492:intron 20.0%
!! TAAATAGTAGAGAACAAAAA+TGG + chr4.3:32820717-32820736 None:intergenic 20.0%
!! TGTTAAAAATGAAGACAAAA+TGG - chr4.3:32820643-32820662 MS.gene003492:intron 20.0%
!! TTCAGTCATAAATCATATAT+AGG + chr4.3:32820537-32820556 None:intergenic 20.0%
!!! AGTTATTTCAAAAGCTTAAA+TGG + chr4.3:32819701-32819720 None:intergenic 20.0%
!!! GTTATTTCAAAAGCTTAAAT+GGG + chr4.3:32819700-32819719 None:intergenic 20.0%
!!! TTTTATGTTGGTTTTATTTC+AGG - chr4.3:32820764-32820783 MS.gene003492:intron 20.0%
! AAATTTCAATGACAAGTATG+AGG - chr4.3:32820788-32820807 MS.gene003492:intron 25.0%
! AGTTGAAAACAAAATTAAGC+AGG - chr4.3:32819562-32819581 MS.gene003492:intron 25.0%
! ATATCAATCTACCATTTCAT+AGG + chr4.3:32819824-32819843 None:intergenic 25.0%
! ATTCTATGATTTCATTGCTT+TGG - chr4.3:32819778-32819797 MS.gene003492:intron 25.0%
! CGTTTAACAATTATTCGTTA+TGG - chr4.3:32819951-32819970 MS.gene003492:intron 25.0%
! GTTGAAAACAAAATTAAGCA+GGG - chr4.3:32819563-32819582 MS.gene003492:intron 25.0%
! TTTATGACTGAATTGAATTC+AGG - chr4.3:32820545-32820564 MS.gene003492:CDS 25.0%
!! TAAACTGAGATGTTTTATGT+TGG - chr4.3:32820752-32820771 MS.gene003492:intron 25.0%
!!! GTATTTGTTTTCAAATTTGC+AGG - chr4.3:32819068-32819087 MS.gene003492:intron 25.0%
!!! TTTGTCTTCATTTTTAACAG+TGG + chr4.3:32820642-32820661 None:intergenic 25.0%
AAGCCTATTAATGTGAAGTA+TGG - chr4.3:32820223-32820242 MS.gene003492:intron 30.0%
AATCCCATACTGTATTGTTA+AGG - chr4.3:32820468-32820487 MS.gene003492:CDS 30.0%
ATCCCATACTGTATTGTTAA+GGG - chr4.3:32820469-32820488 MS.gene003492:CDS 30.0%
CTTATGCAATAAGCTTCAAA+TGG + chr4.3:32819595-32819614 None:intergenic 30.0%
GTTATGGTTATATTAGAGTC+TGG - chr4.3:32819967-32819986 MS.gene003492:intron 30.0%
TAATCTCTCTACACTTAAAC+AGG - chr4.3:32820580-32820599 MS.gene003492:intron 30.0%
! AACAAAATTAAGCAGGGTTT+TGG - chr4.3:32819569-32819588 MS.gene003492:intron 30.0%
! GAGGCATTACTTTATTAGTT+TGG - chr4.3:32819989-32820008 MS.gene003492:intron 30.0%
! GTAGATAAGCTTTTTATCCA+AGG + chr4.3:32819420-32819439 None:intergenic 30.0%
! TGATAAGTACTGTGAAGAAA+TGG + chr4.3:32818875-32818894 None:intergenic 30.0%
! TTCATCGTGTTTGATTTCTT+AGG - chr4.3:32818921-32818940 MS.gene003492:intron 30.0%
! TTTGAAGCTTATTGCATAAG+TGG - chr4.3:32819595-32819614 MS.gene003492:intron 30.0%
!!! GATCTGATTTTGATTGCTAT+AGG - chr4.3:32819319-32819338 MS.gene003492:intron 30.0%
AAAACCCTCGACAAAAATCT+AGG - chr4.3:32819270-32819289 MS.gene003492:CDS 35.0%
AAATGAGATTGGAATTGACG+CGG + chr4.3:32819005-32819024 None:intergenic 35.0%
AACGAAGATCTGAATTGAGA+TGG + chr4.3:32818847-32818866 None:intergenic 35.0%
AAGCCAGACAACTAATTCAA+TGG + chr4.3:32820425-32820444 None:intergenic 35.0%
AAGTATCTTGAACAAGCTTG+TGG + chr4.3:32820110-32820129 None:intergenic 35.0%
ACAACAAACTTACACTTCCT+AGG + chr4.3:32820504-32820523 None:intergenic 35.0%
AGCCAGACAACTAATTCAAT+GGG + chr4.3:32820424-32820443 None:intergenic 35.0%
AGGCCATACTTCACATTAAT+AGG + chr4.3:32820229-32820248 None:intergenic 35.0%
ATACTGTATTGTTAAGGGCA+AGG - chr4.3:32820474-32820493 MS.gene003492:CDS 35.0%
ATGGTTATATTAGAGTCTGG+AGG - chr4.3:32819970-32819989 MS.gene003492:intron 35.0%
ATTTCTTAGGCTCCCAAAAA+AGG - chr4.3:32818934-32818953 MS.gene003492:intron 35.0%
GAAGGAAAAATCAGCAATCT+TGG + chr4.3:32820302-32820321 None:intergenic 35.0%
TCGAAAGTCGTAAATGAGAT+TGG + chr4.3:32819016-32819035 None:intergenic 35.0%
TGCCCTTAACAATACAGTAT+GGG + chr4.3:32820474-32820493 None:intergenic 35.0%
TTGCCCTTAACAATACAGTA+TGG + chr4.3:32820475-32820494 None:intergenic 35.0%
! AAACAGCAGCAGTTTTCTTA+TGG + chr4.3:32820610-32820629 None:intergenic 35.0%
! ACTGGTTTCTTCCTATGAAA+TGG - chr4.3:32819810-32819829 MS.gene003492:intron 35.0%
! GTTGCTTTCATAAGCTATCT+TGG - chr4.3:32819523-32819542 MS.gene003492:CDS 35.0%
! GTTTTCAAATTTGCAGGAGA+AGG - chr4.3:32819074-32819093 MS.gene003492:intron 35.0%
! TTGCTTTGGTTTCTTTCTAC+TGG - chr4.3:32819792-32819811 MS.gene003492:intron 35.0%
!! TCAAGATACTTCTGAAGTAC+AGG - chr4.3:32820119-32820138 MS.gene003492:intron 35.0%
!!! GGAGCTTTAACACCTTTTTT+GGG + chr4.3:32818949-32818968 None:intergenic 35.0%
!!! TGGAGCTTTAACACCTTTTT+TGG + chr4.3:32818950-32818969 None:intergenic 35.0%
AAAGGAAAGGCTTATTGCCA+AGG - chr4.3:32820872-32820891 MS.gene003492:CDS 40.0%
AAGACAAAATGGAGTTCAGC+AGG - chr4.3:32820654-32820673 MS.gene003492:intron 40.0%
AATAAGCCTTTCCTTTGCCT+TGG + chr4.3:32820868-32820887 None:intergenic 40.0%
AATCTGGTCAAATCCCTCTT+CGG + chr4.3:32819159-32819178 None:intergenic 40.0%
ACAAACTTACACTTCCTAGG+CGG + chr4.3:32820501-32820520 None:intergenic 40.0%
ACCCCATTGAATTAGTTGTC+TGG - chr4.3:32820419-32820438 MS.gene003492:CDS 40.0%
AGACAAAATGGAGTTCAGCA+GGG - chr4.3:32820655-32820674 MS.gene003492:intron 40.0%
ATTTGACCAGATTCGTGAAG+TGG - chr4.3:32819166-32819185 MS.gene003492:CDS 40.0%
CCTCCAATTCCAAATTGCTT+TGG + chr4.3:32819126-32819145 None:intergenic 40.0%
GCCAGACAACTAATTCAATG+GGG + chr4.3:32820423-32820442 None:intergenic 40.0%
TGAGGTAGGTAACATGATTG+AGG + chr4.3:32820249-32820268 None:intergenic 40.0%
TTAATACAGGATTTCGGCCT+TGG - chr4.3:32819400-32819419 MS.gene003492:CDS 40.0%
! ATGACAAGTATGAGGAGTAC+AGG - chr4.3:32820796-32820815 MS.gene003492:intron 40.0%
! CCAAAGCAATTTGGAATTGG+AGG - chr4.3:32819123-32819142 MS.gene003492:intron 40.0%
! CGTCCAAAGCAATTTGGAAT+TGG - chr4.3:32819120-32819139 MS.gene003492:intron 40.0%
! CTCCAACTAGGGTTTTTCTT+CGG - chr4.3:32818761-32818780 MS.gene003492:CDS 40.0%
! CTGACCTAGATTTTTGTCGA+GGG + chr4.3:32819277-32819296 None:intergenic 40.0%
! GCTTTAAGCTACAACGTGTA+TGG + chr4.3:32819901-32819920 None:intergenic 40.0%
! TCTGACCTAGATTTTTGTCG+AGG + chr4.3:32819278-32819297 None:intergenic 40.0%
! TTAGTGAACTGGTTCAAAGC+TGG + chr4.3:32819252-32819271 None:intergenic 40.0%
!! AGAAGGAGAGGCTTTTGAAA+AGG - chr4.3:32820161-32820180 MS.gene003492:intron 40.0%
!! GAAGGAGAGGCTTTTGAAAA+GGG - chr4.3:32820162-32820181 MS.gene003492:intron 40.0%
!! TTCTTCTTTGAAGCTGCAAC+TGG + chr4.3:32818970-32818989 None:intergenic 40.0%
!!! AGAAGAGGATTTTGAAGCAG+AGG - chr4.3:32819214-32819233 MS.gene003492:CDS 40.0%
!!! GATTTTGAAGCAGAGGTTGA+AGG - chr4.3:32819221-32819240 MS.gene003492:CDS 40.0%
ATGAGCAATCACGACAAGCT+GGG + chr4.3:32820392-32820411 None:intergenic 45.0%
CAAACTTACACTTCCTAGGC+GGG + chr4.3:32820500-32820519 None:intergenic 45.0%
CTCCGAAGAAAAACCCTAGT+TGG + chr4.3:32818766-32818785 None:intergenic 45.0%
GAATTGACGCGGTTACTTAC+AGG + chr4.3:32818994-32819013 None:intergenic 45.0%
GATTTCCATCTTCCTGCACA+AGG + chr4.3:32820452-32820471 None:intergenic 45.0%
TGCATGTGCTGCATAAATGC+TGG - chr4.3:32819753-32819772 MS.gene003492:intron 45.0%
TTTGGACGCTTCTCAAACAG+CGG + chr4.3:32819108-32819127 None:intergenic 45.0%
! ATGAGGAGTACAGGAAGAAG+TGG - chr4.3:32820805-32820824 MS.gene003492:intron 45.0%
! TGAGGAGTACAGGAAGAAGT+GGG - chr4.3:32820806-32820825 MS.gene003492:intron 45.0%
!! GAGAAGCGTCCAAAGCAATT+TGG - chr4.3:32819114-32819133 MS.gene003492:intron 45.0%
!! TGTCGAGGGTTTTAGTGAAC+TGG + chr4.3:32819263-32819282 None:intergenic 45.0%
ACAAGGCTGAGAAGAAGGAG+AGG - chr4.3:32820149-32820168 MS.gene003492:intron 50.0%
AGCATTAGCACCAGCAGCAA+TGG - chr4.3:32818811-32818830 MS.gene003492:CDS 50.0%
AGTATACGCACCATTGCTGC+TGG + chr4.3:32818824-32818843 None:intergenic 50.0%
ATGCCACCTTAATCGCCTCT+AGG + chr4.3:32820682-32820701 None:intergenic 50.0%
CAAATCCCAAGCCAAGACCA+AGG - chr4.3:32820848-32820867 MS.gene003492:CDS 50.0%
CATGAGCAATCACGACAAGC+TGG + chr4.3:32820393-32820412 None:intergenic 50.0%
CCAAGACCAAGGCAAAGGAA+AGG - chr4.3:32820859-32820878 MS.gene003492:CDS 50.0%
CCTTTCCTTTGCCTTGGTCT+TGG + chr4.3:32820862-32820881 None:intergenic 50.0%
CTCTGCACCTGAACGTTCTT+CGG + chr4.3:32819192-32819211 None:intergenic 50.0%
GAAAGACAACCTGCTCGATG+AGG + chr4.3:32820267-32820286 None:intergenic 50.0%
GCTAATGCTCTGTGTCTGTG+CGG + chr4.3:32818800-32818819 None:intergenic 50.0%
GGAAAGGCTTATTGCCAAGG+AGG - chr4.3:32820875-32820894 MS.gene003492:CDS 50.0%
TGAGGACAAGGCTGAGAAGA+AGG - chr4.3:32820144-32820163 MS.gene003492:intron 50.0%
TGTTACCTACCTCATCGAGC+AGG - chr4.3:32820255-32820274 MS.gene003492:intron 50.0%
TTCAGGTGCAGAGGAAGAAG+AGG - chr4.3:32819199-32819218 MS.gene003492:CDS 50.0%
TTGGACGCTTCTCAAACAGC+GGG + chr4.3:32819107-32819126 None:intergenic 50.0%
TTTGAAAAGGGCTCAGGCAG+AGG - chr4.3:32820174-32820193 MS.gene003492:intron 50.0%
! GAGGAGTACAGGAAGAAGTG+GGG - chr4.3:32820807-32820826 MS.gene003492:intron 50.0%
! GTGAACTGGTTCAAAGCTGG+TGG + chr4.3:32819249-32819268 None:intergenic 50.0%
! TTCTTCTCAGCCTTGTCCTC+AGG + chr4.3:32820145-32820164 None:intergenic 50.0%
!! AAGTGGGGTGGTGGAATCAT+GGG - chr4.3:32820822-32820841 MS.gene003492:intron 50.0%
!! ACTTCTGAAGTACAGGCCTG+AGG - chr4.3:32820126-32820145 MS.gene003492:intron 50.0%
!! CTTGGTCTTGGCTTGGGATT+TGG + chr4.3:32820850-32820869 None:intergenic 50.0%
!! CTTTGCCTTGGTCTTGGCTT+GGG + chr4.3:32820856-32820875 None:intergenic 50.0%
!! GAGGCTTTTGAAAAGGGCTC+AGG - chr4.3:32820168-32820187 MS.gene003492:intron 50.0%
ACGCTTCTCAAACAGCGGGT+TGG + chr4.3:32819103-32819122 None:intergenic 55.0%
AGGTGCATTGCCACCGAAGA+GGG - chr4.3:32819143-32819162 MS.gene003492:intron 55.0%
CAGGGTCCTAGAGGCGATTA+AGG - chr4.3:32820673-32820692 MS.gene003492:intron 55.0%
CCAAGCCAAGACCAAGGCAA+AGG - chr4.3:32820854-32820873 MS.gene003492:CDS 55.0%
CGAAGAACGTTCAGGTGCAG+AGG - chr4.3:32819190-32819209 MS.gene003492:CDS 55.0%
CTGGTCAAATCCCTCTTCGG+TGG + chr4.3:32819156-32819175 None:intergenic 55.0%
CTTCGGCCACTTCACGAATC+TGG + chr4.3:32819175-32819194 None:intergenic 55.0%
GAACAAGCTTGTGGCTGCAG+AGG + chr4.3:32820101-32820120 None:intergenic 55.0%
GAAGTACAGGCCTGAGGACA+AGG - chr4.3:32820132-32820151 MS.gene003492:intron 55.0%
GAAGTGGCCGAAGAACGTTC+AGG - chr4.3:32819182-32819201 MS.gene003492:CDS 55.0%
GACAACCTGCTCGATGAGGT+AGG + chr4.3:32820263-32820282 None:intergenic 55.0%
GAGTACAGGAAGAAGTGGGG+TGG - chr4.3:32820810-32820829 MS.gene003492:intron 55.0%
GGTCCTAGAGGCGATTAAGG+TGG - chr4.3:32820676-32820695 MS.gene003492:intron 55.0%
TACAGGAAGAAGTGGGGTGG+TGG - chr4.3:32820813-32820832 MS.gene003492:intron 55.0%
TCCATCTTCCTGCACAAGGC+TGG + chr4.3:32820448-32820467 None:intergenic 55.0%
! TCCAGCCTTGTGCAGGAAGA+TGG - chr4.3:32820444-32820463 MS.gene003492:CDS 55.0%
!! CCTTTGCCTTGGTCTTGGCT+TGG + chr4.3:32820857-32820876 None:intergenic 55.0%
!! GAAGTGGGGTGGTGGAATCA+TGG - chr4.3:32820821-32820840 MS.gene003492:intron 55.0%
CATTCTCTGGGCAGCCTCCT+TGG + chr4.3:32820892-32820911 None:intergenic 60.0%
GAGGTGCATTGCCACCGAAG+AGG - chr4.3:32819142-32819161 MS.gene003492:intron 60.0%
GGAGTTCAGCAGGGTCCTAG+AGG - chr4.3:32820664-32820683 MS.gene003492:intron 60.0%
! TCTGGCTTCCAGCCTTGTGC+AGG - chr4.3:32820437-32820456 MS.gene003492:CDS 60.0%
AAGGGCTCAGGCAGAGGCTG+AGG - chr4.3:32820180-32820199 MS.gene003492:intron 65.0%
AGGGCTCAGGCAGAGGCTGA+GGG - chr4.3:32820181-32820200 MS.gene003492:intron 65.0%
GTTAAGGGCAAGGCCCGCCT+AGG - chr4.3:32820484-32820503 MS.gene003492:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 32818755 32820917 32818755 ID=MS.gene003492
chr4.3 mRNA 32818755 32820917 32818755 ID=MS.gene003492.t1;Parent=MS.gene003492
chr4.3 exon 32820840 32820917 32820840 ID=MS.gene003492.t1.exon1;Parent=MS.gene003492.t1
chr4.3 CDS 32820840 32820917 32820840 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32820679 32820729 32820679 ID=MS.gene003492.t1.exon2;Parent=MS.gene003492.t1
chr4.3 CDS 32820679 32820729 32820679 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32820381 32820582 32820381 ID=MS.gene003492.t1.exon3;Parent=MS.gene003492.t1
chr4.3 CDS 32820381 32820582 32820381 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32819396 32819565 32819396 ID=MS.gene003492.t1.exon4;Parent=MS.gene003492.t1
chr4.3 CDS 32819396 32819565 32819396 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32819162 32819290 32819162 ID=MS.gene003492.t1.exon5;Parent=MS.gene003492.t1
chr4.3 CDS 32819162 32819290 32819162 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32818978 32819070 32818978 ID=MS.gene003492.t1.exon6;Parent=MS.gene003492.t1
chr4.3 CDS 32818978 32819070 32818978 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
chr4.3 exon 32818755 32818886 32818755 ID=MS.gene003492.t1.exon7;Parent=MS.gene003492.t1
chr4.3 CDS 32818755 32818886 32818755 ID=cds.MS.gene003492.t1;Parent=MS.gene003492.t1
Gene Sequence

>MS.gene003492

ATGGGACTCCAACTAGGGTTTTTCTTCGGAGAGTTTTCGTCACCGCACAGACACAGAGCATTAGCACCAGCAGCAATGGTGCGTATACTCCATCTCAATTCAGATCTTCGTTTATCTCCATTTCTTCACAGTACTTATCAATTTTTGTCTCTAATTAACGTTTATCTTCATCGTGTTTGATTTCTTAGGCTCCCAAAAAAGGTGTTAAAGCTCCAGTTGCAGCTTCAAAGAAGAAACCTGTAAGTAACCGCGTCAATTCCAATCTCATTTACGACTTTCGATTCATTTTTTGTATTGTTTTGAAAGTGAATTTGTATTTGTTTTCAAATTTGCAGGAGAAGGTTACCAACCCGCTGTTTGAGAAGCGTCCAAAGCAATTTGGAATTGGAGGTGCATTGCCACCGAAGAGGGATTTGACCAGATTCGTGAAGTGGCCGAAGAACGTTCAGGTGCAGAGGAAGAAGAGGATTTTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACTAAAACCCTCGACAAAAATCTAGGTCAGAAATAAATTATTGTAATGTTTGGATCTGATTTTGATTGCTATAGGAGTTATTTACGTGTTATTTGCAATTTTTGTAATATGTTAATTATGGTAAATTGTAAAATTAATACAGGATTTCGGCCTTGGATAAAAAGCTTATCTACAGCTAATAGCATAAGTGCTTATTTGTATAAGCTATTTCTATAGCAAAAGATAAAATAAAGTTCAATTATTTTTGTATATATAAGTTGCTTTCATAAGCTATCTTGGTGCTCTCAATGAAATAAGTTGAAAACAAAATTAAGCAGGGTTTTGGCCATTTGAAGCTTATTGCATAAGTGGTTATTATGATTATCAGCTATTTGTATAAACTAAAGTTAAGTTGTTTTTGTATAAGCTATTAGCTGTTTTGATAACTTCTCCCATTTAAGCTTTTGAAATAACTTATCAATGCTCATGAAATTAGCTTGATAACTTTGCATGTGCTGCATAAATGCTGGTAATTCTATGATTTCATTGCTTTGGTTTCTTTCTACTGGTTTCTTCCTATGAAATGGTAGATTGATATGCTGAGTATGCTGTTACTTTGACAGTTTTTGTTATCTCAAACGTTATTTTACTGCCATACACGTTGTAGCTTAAAGCACTGCTAAGCATTTTACTTGTTTGTTTTGACGTTTAACAATTATTCGTTATGGTTATATTAGAGTCTGGAGGCATTACTTTATTAGTTTGGTTCCCTGATATAACAATATACTGATTCTTTGTTCATTTTTGTTGCTTTATATTTAATGTGATTTTTTATCATCTTTGATTGTCGTACCTCTGCAGCCACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGACAAGGCTGAGAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAGGGCAAAACAGTTGAAACTAAGAAGCCTATTAATGTGAAGTATGGCCTCAATCATGTTACCTACCTCATCGAGCAGGTTGTCTTTCTGTCATGTTACTCCAAGATTGCTGATTTTTCCTTCTAATTTGTTATTTTACTGTGATATTGATGAATGACTGATTAAGCTTTATTTTCTTTACAGAATAAAGCCCAGCTTGTCGTGATTGCTCATGATGTCGACCCCATTGAATTAGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATCCCATACTGTATTGTTAAGGGCAAGGCCCGCCTAGGAAGTGTAAGTTTGTTGTGATTTGAATACCTATATATGATTTATGACTGAATTGAATTCAGGTAATGACTAATTTAATCTCTCTACACTTAAACAGGTTGTCCATAAGAAAACTGCTGCTGTTTTGTGCTTGACCACTGTTAAAAATGAAGACAAAATGGAGTTCAGCAGGGTCCTAGAGGCGATTAAGGTGGCATATAATTTTATTTCCATTTTTGTTCTCTACTATTTATATACTCTTGCCATTTAAACTGAGATGTTTTATGTTGGTTTTATTTCAGGCAAATTTCAATGACAAGTATGAGGAGTACAGGAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAAGGCAAAGGAAAGGCTTATTGCCAAGGAGGCTGCCCAGAGAATGACCTAG
Protein sequence

>MS.gene003492.t1

MGLQLGFFFGEFSSPHRHRALAPAAMAPKKGVKAPVAASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQVQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVETKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSVVHKKTAAVLCLTTVKNEDKMEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRMT