Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34225.t1 | XP_003628540.1 | 91.2 | 147 | 12 | 1 | 1 | 146 | 1 | 147 | 1.50E-54 | 222.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34225.t1 | Q94KR7 | 84.1 | 82 | 13 | 0 | 59 | 140 | 54 | 135 | 5.2e-35 | 148.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34225.t1 | G7LDQ8 | 91.2 | 147 | 12 | 1 | 1 | 146 | 1 | 147 | 1.1e-54 | 222.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene34225 | 0.866727 | 2.31E-65 | -1.69E-46 |
| MS.gene049171 | MS.gene34225 | 0.822675 | 2.09E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene34225 | 0.82522 | 5.28E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene34225 | 0.811979 | 5.34E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene34225 | 0.815861 | 7.44E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene34225 | 0.822208 | 2.68E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene34225 | 0.854128 | 1.51E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene34225 | 0.850089 | 2.13E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene34225 | 0.81138 | 7.21E-51 | -1.69E-46 |
| MS.gene050315 | MS.gene34225 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene34225 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene050507 | MS.gene34225 | 0.82832 | 9.60E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene34225 | 0.810633 | 1.05E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene34225 | 0.8355 | 1.62E-56 | -1.69E-46 |
| MS.gene050547 | MS.gene34225 | -0.802343 | 5.87E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene34225 | 0.834393 | 3.08E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene34225 | 0.818402 | 2.00E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene34225 | 0.850372 | 1.77E-60 | -1.69E-46 |
| MS.gene050699 | MS.gene34225 | 0.82668 | 2.38E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene34225 | 0.853194 | 2.81E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene34225 | 0.831746 | 1.40E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene34225 | 0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene34225 | 0.823909 | 1.07E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene34225 | 0.85202 | 6.07E-61 | -1.69E-46 |
| MS.gene05100 | MS.gene34225 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene34225 | 0.844095 | 9.35E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene34225 | 0.820464 | 6.77E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene34225 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene34225 | 0.865608 | 5.22E-65 | -1.69E-46 |
| MS.gene051838 | MS.gene34225 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene34225 | 0.804736 | 1.87E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene34225 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene34225 | 0.810051 | 1.40E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene34225 | 0.83663 | 8.36E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene34225 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene34225 | 0.833432 | 5.35E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene34225 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene34225 | 0.83552 | 1.60E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene34225 | 0.859139 | 5.09E-63 | -1.69E-46 |
| MS.gene052823 | MS.gene34225 | 0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene34225 | 0.804376 | 2.22E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene34225 | 0.851025 | 1.16E-60 | -1.69E-46 |
| MS.gene053009 | MS.gene34225 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene34225 | 0.806256 | 8.98E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene34225 | 0.821272 | 4.41E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene34225 | 0.835673 | 1.46E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene34225 | 0.822271 | 2.59E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene34225 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene34225 | 0.826006 | 3.44E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene34225 | 0.839768 | 1.30E-57 | -1.69E-46 |
| MS.gene053579 | MS.gene34225 | 0.847077 | 1.45E-59 | -1.69E-46 |
| MS.gene053626 | MS.gene34225 | 0.819773 | 9.74E-53 | -1.69E-46 |
| MS.gene053632 | MS.gene34225 | 0.82867 | 7.90E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene34225 | 0.808407 | 3.14E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene34225 | 0.837788 | 4.23E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene34225 | 0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene34225 | 0.808322 | 3.28E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene34225 | -0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene34225 | 0.8433 | 1.53E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene34225 | 0.820601 | 6.29E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene34225 | 0.830469 | 2.89E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene34225 | 0.826238 | 3.03E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene34225 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene34225 | 0.827795 | 1.28E-54 | -1.69E-46 |
| MS.gene055412 | MS.gene34225 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene34225 | 0.821454 | 4.00E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene34225 | 0.816926 | 4.30E-52 | -1.69E-46 |
| MS.gene056040 | MS.gene34225 | 0.810173 | 1.31E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene34225 | 0.809717 | 1.65E-50 | -1.69E-46 |
| MS.gene056610 | MS.gene34225 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene056657 | MS.gene34225 | 0.803908 | 2.79E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene34225 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene34225 | 0.815109 | 1.09E-51 | -1.69E-46 |
| MS.gene057048 | MS.gene34225 | 0.820082 | 8.28E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene34225 | 0.825404 | 4.78E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene34225 | 0.822204 | 2.68E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene34225 | 0.807868 | 4.10E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene34225 | 0.823854 | 1.11E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene34225 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene34225 | 0.840278 | 9.58E-58 | -1.69E-46 |
| MS.gene057658 | MS.gene34225 | 0.835941 | 1.25E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene34225 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene34225 | 0.820072 | 8.32E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene34225 | 0.843279 | 1.54E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene34225 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene34225 | 0.801744 | 7.79E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene34225 | 0.803822 | 2.90E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene34225 | 0.834217 | 3.41E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene34225 | 0.842393 | 2.66E-58 | -1.69E-46 |
| MS.gene058544 | MS.gene34225 | 0.855643 | 5.50E-62 | -1.69E-46 |
| MS.gene058723 | MS.gene34225 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene34225 | 0.830501 | 2.83E-55 | -1.69E-46 |
| MS.gene05883 | MS.gene34225 | 0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene34225 | 0.835794 | 1.36E-56 | -1.69E-46 |
| MS.gene059141 | MS.gene34225 | 0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene34225 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene34225 | 0.837635 | 4.63E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene34225 | 0.827333 | 1.66E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene34225 | 0.816335 | 5.83E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene34225 | 0.81738 | 3.40E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene34225 | 0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene34225 | 0.827171 | 1.81E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene34225 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene34225 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene34225 | 0.818054 | 2.39E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene34225 | 0.812476 | 4.16E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene34225 | 0.820161 | 7.94E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene34225 | 0.870344 | 1.57E-66 | -1.69E-46 |
| MS.gene061150 | MS.gene34225 | 0.84751 | 1.10E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene34225 | 0.813828 | 2.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34225.t1 | MTR_8g061130 | 97.279 | 147 | 3 | 1 | 1 | 146 | 1 | 147 | 5.74e-101 | 286 |
| MS.gene34225.t1 | MTR_0002s0770 | 73.529 | 68 | 18 | 0 | 70 | 137 | 15 | 82 | 1.74e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34225.t1 | AT4G11175 | 69.014 | 71 | 22 | 0 | 67 | 137 | 67 | 137 | 1.01e-30 | 108 |
Find 73 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGGTGGGGTGGGGTTT+AGG | 0.140970 | 8.4:+47675625 | None:intergenic |
| GGATGGTGGGGTGGGGTTTA+GGG | 0.154902 | 8.4:+47675626 | None:intergenic |
| CCAAAGGACGTATCATTTAT+AGG | 0.219493 | 8.4:-47675380 | MS.gene34225:CDS |
| TTTGTCAGGGGTTGAGGATT+TGG | 0.259095 | 8.4:+47675587 | None:intergenic |
| TTCTGCTCGCTGGCTTTGTC+AGG | 0.284276 | 8.4:+47675573 | None:intergenic |
| GATGGTGGGGTGGGGTTTAG+GGG | 0.321440 | 8.4:+47675627 | None:intergenic |
| ACAAAGCCAGCGAGCAGAAA+TGG | 0.346149 | 8.4:-47675569 | MS.gene34225:CDS |
| GGTGAAGATGGATGGTGGGG+TGG | 0.347822 | 8.4:+47675617 | None:intergenic |
| TGGTGGGGTGGGGTTTAGGG+GGG | 0.353477 | 8.4:+47675629 | None:intergenic |
| GTTGGCGATGGTGAATGATT+GGG | 0.370868 | 8.4:+47675733 | None:intergenic |
| GATGGAGGGCGGAGGAAGGA+TGG | 0.371912 | 8.4:+47675651 | None:intergenic |
| TGGGGTGCGAAAGTGGAGAG+TGG | 0.374140 | 8.4:+47675671 | None:intergenic |
| GAATGATTGGGGCGTGGAAT+GGG | 0.377126 | 8.4:+47675745 | None:intergenic |
| ATGGTGGGGTGGGGTTTAGG+GGG | 0.383430 | 8.4:+47675628 | None:intergenic |
| AATTACGTTCGGATCCTTCC+TGG | 0.385097 | 8.4:-47675441 | MS.gene34225:CDS |
| GCTGGCTTTGTCAGGGGTTG+AGG | 0.393571 | 8.4:+47675581 | None:intergenic |
| TGAAGATGGATGGTGGGGTG+GGG | 0.398425 | 8.4:+47675619 | None:intergenic |
| ATGGAGGGCGGAGGAAGGAT+GGG | 0.406506 | 8.4:+47675652 | None:intergenic |
| GTGAAGATGGATGGTGGGGT+GGG | 0.408157 | 8.4:+47675618 | None:intergenic |
| GGTTGGCGATGGTGAATGAT+TGG | 0.410559 | 8.4:+47675732 | None:intergenic |
| CCTATAAATGATACGTCCTT+TGG | 0.416877 | 8.4:+47675380 | None:intergenic |
| CGAACACGGAACATGCCGTT+AGG | 0.422494 | 8.4:+47675516 | None:intergenic |
| GGATCCGAACGTAATTCTTT+CGG | 0.427721 | 8.4:+47675448 | None:intergenic |
| CTTATCCTTGGATATATCTC+TGG | 0.434923 | 8.4:-47675477 | MS.gene34225:CDS |
| TGGAGGGCGGAGGAAGGATG+GGG | 0.435398 | 8.4:+47675653 | None:intergenic |
| GTGGACCCATTTCTGCTCGC+TGG | 0.449738 | 8.4:+47675563 | None:intergenic |
| GGAAGGATGGGGTGCGAAAG+TGG | 0.455893 | 8.4:+47675664 | None:intergenic |
| TGAATGATTGGGGCGTGGAA+TGG | 0.456507 | 8.4:+47675744 | None:intergenic |
| TCTGCTCGCTGGCTTTGTCA+GGG | 0.460798 | 8.4:+47675574 | None:intergenic |
| GGGGTGCGAAAGTGGAGAGT+GGG | 0.461179 | 8.4:+47675672 | None:intergenic |
| GAGTGGGTGGTGACGGTAGA+GGG | 0.464511 | 8.4:+47675711 | None:intergenic |
| CAGAGATATATCCAAGGATA+AGG | 0.465359 | 8.4:+47675478 | None:intergenic |
| GGGTGCGAAAGTGGAGAGTG+GGG | 0.467038 | 8.4:+47675673 | None:intergenic |
| GTCAGGGGTTGAGGATTTGG+CGG | 0.477583 | 8.4:+47675590 | None:intergenic |
| CAAAGCCAGCGAGCAGAAAT+GGG | 0.481491 | 8.4:-47675568 | MS.gene34225:CDS |
| GGTTGAGGATTTGGCGGCGA+CGG | 0.484284 | 8.4:+47675596 | None:intergenic |
| GATAATGAAGACCTTATCCT+TGG | 0.484697 | 8.4:-47675489 | MS.gene34225:CDS |
| TATAGGCTTCGTAATACTCC+TGG | 0.487758 | 8.4:-47675363 | MS.gene34225:CDS |
| TTTGGCGGCGACGGTGAAGA+TGG | 0.493162 | 8.4:+47675605 | None:intergenic |
| GATTGGGGCGTGGAATGGGA+TGG | 0.497058 | 8.4:+47675749 | None:intergenic |
| GGAGTGGGTGGTGACGGTAG+AGG | 0.509085 | 8.4:+47675710 | None:intergenic |
| CGACGGTGAAGATGGATGGT+GGG | 0.513263 | 8.4:+47675613 | None:intergenic |
| ATAAATGATACGTCCTTTGG+AGG | 0.516040 | 8.4:+47675383 | None:intergenic |
| GCGACGGTGAAGATGGATGG+TGG | 0.519916 | 8.4:+47675612 | None:intergenic |
| AGAAAAGGAGTGGGTGGTGA+CGG | 0.521019 | 8.4:+47675704 | None:intergenic |
| AACTAAGAAGAGCCACCACC+AGG | 0.533810 | 8.4:+47675345 | None:intergenic |
| CTGCTCGCTGGCTTTGTCAG+GGG | 0.538260 | 8.4:+47675575 | None:intergenic |
| CTTCGTAATACTCCTGGTGG+TGG | 0.553297 | 8.4:-47675357 | MS.gene34225:CDS |
| GGGTGGTGACGGTAGAGGGT+TGG | 0.556218 | 8.4:+47675715 | None:intergenic |
| TTGGCGATGGTGAATGATTG+GGG | 0.557416 | 8.4:+47675734 | None:intergenic |
| GTGGAATGGGATGGAAGATG+AGG | 0.567978 | 8.4:+47675758 | None:intergenic |
| GCGGCGACGGTGAAGATGGA+TGG | 0.571559 | 8.4:+47675609 | None:intergenic |
| GGATCCGAAAGAATTACGTT+CGG | 0.574169 | 8.4:-47675452 | MS.gene34225:CDS |
| CACGGAACATGCCGTTAGGG+AGG | 0.578464 | 8.4:+47675520 | None:intergenic |
| GAACACGGAACATGCCGTTA+GGG | 0.578793 | 8.4:+47675517 | None:intergenic |
| AGTCGATATGATTCCTCCAA+AGG | 0.579977 | 8.4:-47675396 | MS.gene34225:CDS |
| CTTCATTATCGAGACGAACA+CGG | 0.580715 | 8.4:+47675502 | None:intergenic |
| TCAACTCTAACTCTATCTCC+AGG | 0.592855 | 8.4:+47675423 | None:intergenic |
| ATCACAGAATCCCTCCCTAA+CGG | 0.596048 | 8.4:-47675531 | MS.gene34225:CDS |
| GACGGTGAAGATGGATGGTG+GGG | 0.596186 | 8.4:+47675614 | None:intergenic |
| GGTGCGAAAGTGGAGAGTGG+GGG | 0.609773 | 8.4:+47675674 | None:intergenic |
| TGACGGTAGAGGGTTGGCGA+TGG | 0.612664 | 8.4:+47675721 | None:intergenic |
| CTCTAACTCTATCTCCAGGA+AGG | 0.615980 | 8.4:+47675427 | None:intergenic |
| GGGTGTGGAAAGAAAAGGAG+TGG | 0.621177 | 8.4:+47675694 | None:intergenic |
| GTGGAAAGAAAAGGAGTGGG+TGG | 0.622441 | 8.4:+47675698 | None:intergenic |
| ATTCTGTGATGAGACCTTCG+TGG | 0.627359 | 8.4:+47675544 | None:intergenic |
| ACGGAACATGCCGTTAGGGA+GGG | 0.631389 | 8.4:+47675521 | None:intergenic |
| GATGGTGAATGATTGGGGCG+TGG | 0.638062 | 8.4:+47675739 | None:intergenic |
| TCCTTGGATATATCTCTGGA+AGG | 0.641053 | 8.4:-47675473 | MS.gene34225:CDS |
| TCCTTCCAGAGATATATCCA+AGG | 0.654970 | 8.4:+47675472 | None:intergenic |
| GGTGTGGAAAGAAAAGGAGT+GGG | 0.666040 | 8.4:+47675695 | None:intergenic |
| AGGCTTCGTAATACTCCTGG+TGG | 0.702905 | 8.4:-47675360 | MS.gene34225:CDS |
| GAGCAGAAATGGGTCCACGA+AGG | 0.710770 | 8.4:-47675558 | MS.gene34225:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATAAATGATACGTCCTTTGG+AGG | + | chr8.4:47675732-47675751 | None:intergenic | 35.0% | |
| CAGAGATATATCCAAGGATA+AGG | + | chr8.4:47675637-47675656 | None:intergenic | 35.0% | |
| CCAAAGGACGTATCATTTAT+AGG | - | chr8.4:47675732-47675751 | MS.gene34225:CDS | 35.0% | |
| CCTATAAATGATACGTCCTT+TGG | + | chr8.4:47675735-47675754 | None:intergenic | 35.0% | |
| CTTATCCTTGGATATATCTC+TGG | - | chr8.4:47675635-47675654 | MS.gene34225:CDS | 35.0% | |
| GATAATGAAGACCTTATCCT+TGG | - | chr8.4:47675623-47675642 | MS.gene34225:CDS | 35.0% | |
| AGTCGATATGATTCCTCCAA+AGG | - | chr8.4:47675716-47675735 | MS.gene34225:CDS | 40.0% | |
| CTTCATTATCGAGACGAACA+CGG | + | chr8.4:47675613-47675632 | None:intergenic | 40.0% | |
| GGATCCGAAAGAATTACGTT+CGG | - | chr8.4:47675660-47675679 | MS.gene34225:CDS | 40.0% | |
| GGATCCGAACGTAATTCTTT+CGG | + | chr8.4:47675667-47675686 | None:intergenic | 40.0% | |
| TATAGGCTTCGTAATACTCC+TGG | - | chr8.4:47675749-47675768 | MS.gene34225:CDS | 40.0% | |
| TCAACTCTAACTCTATCTCC+AGG | + | chr8.4:47675692-47675711 | None:intergenic | 40.0% | |
| TCCTTCCAGAGATATATCCA+AGG | + | chr8.4:47675643-47675662 | None:intergenic | 40.0% | |
| TCCTTGGATATATCTCTGGA+AGG | - | chr8.4:47675639-47675658 | MS.gene34225:CDS | 40.0% | |
| AATTACGTTCGGATCCTTCC+TGG | - | chr8.4:47675671-47675690 | MS.gene34225:CDS | 45.0% | |
| ATCACAGAATCCCTCCCTAA+CGG | - | chr8.4:47675581-47675600 | MS.gene34225:CDS | 45.0% | |
| ATTCTGTGATGAGACCTTCG+TGG | + | chr8.4:47675571-47675590 | None:intergenic | 45.0% | |
| CTCTAACTCTATCTCCAGGA+AGG | + | chr8.4:47675688-47675707 | None:intergenic | 45.0% | |
| GGTGTGGAAAGAAAAGGAGT+GGG | + | chr8.4:47675420-47675439 | None:intergenic | 45.0% | |
| GTTGGCGATGGTGAATGATT+GGG | + | chr8.4:47675382-47675401 | None:intergenic | 45.0% | |
| TTGGCGATGGTGAATGATTG+GGG | + | chr8.4:47675381-47675400 | None:intergenic | 45.0% | |
| TTTGTCAGGGGTTGAGGATT+TGG | + | chr8.4:47675528-47675547 | None:intergenic | 45.0% | |
| ACAAAGCCAGCGAGCAGAAA+TGG | - | chr8.4:47675543-47675562 | MS.gene34225:CDS | 50.0% | |
| AGAAAAGGAGTGGGTGGTGA+CGG | + | chr8.4:47675411-47675430 | None:intergenic | 50.0% | |
| AGGCTTCGTAATACTCCTGG+TGG | - | chr8.4:47675752-47675771 | MS.gene34225:CDS | 50.0% | |
| CAAAGCCAGCGAGCAGAAAT+GGG | - | chr8.4:47675544-47675563 | MS.gene34225:CDS | 50.0% | |
| CTTCGTAATACTCCTGGTGG+TGG | - | chr8.4:47675755-47675774 | MS.gene34225:CDS | 50.0% | |
| GAACACGGAACATGCCGTTA+GGG | + | chr8.4:47675598-47675617 | None:intergenic | 50.0% | |
| GAATGATTGGGGCGTGGAAT+GGG | + | chr8.4:47675370-47675389 | None:intergenic | 50.0% | |
| GGGTGTGGAAAGAAAAGGAG+TGG | + | chr8.4:47675421-47675440 | None:intergenic | 50.0% | |
| GGTTGGCGATGGTGAATGAT+TGG | + | chr8.4:47675383-47675402 | None:intergenic | 50.0% | |
| GTGGAAAGAAAAGGAGTGGG+TGG | + | chr8.4:47675417-47675436 | None:intergenic | 50.0% | |
| GTGGAATGGGATGGAAGATG+AGG | + | chr8.4:47675357-47675376 | None:intergenic | 50.0% | |
| TGAATGATTGGGGCGTGGAA+TGG | + | chr8.4:47675371-47675390 | None:intergenic | 50.0% | |
| ! | AGTGGGGGTGTGGAAAGAAA+AGG | + | chr8.4:47675426-47675445 | None:intergenic | 50.0% |
| ACGGAACATGCCGTTAGGGA+GGG | + | chr8.4:47675594-47675613 | None:intergenic | 55.0% | |
| CGAACACGGAACATGCCGTT+AGG | + | chr8.4:47675599-47675618 | None:intergenic | 55.0% | |
| CGACGGTGAAGATGGATGGT+GGG | + | chr8.4:47675502-47675521 | None:intergenic | 55.0% | |
| GACGGTGAAGATGGATGGTG+GGG | + | chr8.4:47675501-47675520 | None:intergenic | 55.0% | |
| GAGCAGAAATGGGTCCACGA+AGG | - | chr8.4:47675554-47675573 | MS.gene34225:CDS | 55.0% | |
| GATGGTGAATGATTGGGGCG+TGG | + | chr8.4:47675376-47675395 | None:intergenic | 55.0% | |
| GTCAGGGGTTGAGGATTTGG+CGG | + | chr8.4:47675525-47675544 | None:intergenic | 55.0% | |
| !! | GTGAAGATGGATGGTGGGGT+GGG | + | chr8.4:47675497-47675516 | None:intergenic | 55.0% |
| !! | TCTGCTCGCTGGCTTTGTCA+GGG | + | chr8.4:47675541-47675560 | None:intergenic | 55.0% |
| !! | TGAAGATGGATGGTGGGGTG+GGG | + | chr8.4:47675496-47675515 | None:intergenic | 55.0% |
| !! | TTCTGCTCGCTGGCTTTGTC+AGG | + | chr8.4:47675542-47675561 | None:intergenic | 55.0% |
| ATGGAGGGCGGAGGAAGGAT+GGG | + | chr8.4:47675463-47675482 | None:intergenic | 60.0% | |
| CACGGAACATGCCGTTAGGG+AGG | + | chr8.4:47675595-47675614 | None:intergenic | 60.0% | |
| GAAAGTGGAGAGTGGGGGTG+TGG | + | chr8.4:47675436-47675455 | None:intergenic | 60.0% | |
| GATTGGGGCGTGGAATGGGA+TGG | + | chr8.4:47675366-47675385 | None:intergenic | 60.0% | |
| GCGACGGTGAAGATGGATGG+TGG | + | chr8.4:47675503-47675522 | None:intergenic | 60.0% | |
| GGAAGGATGGGGTGCGAAAG+TGG | + | chr8.4:47675451-47675470 | None:intergenic | 60.0% | |
| GGGGTGCGAAAGTGGAGAGT+GGG | + | chr8.4:47675443-47675462 | None:intergenic | 60.0% | |
| GGGTGCGAAAGTGGAGAGTG+GGG | + | chr8.4:47675442-47675461 | None:intergenic | 60.0% | |
| GGTGCGAAAGTGGAGAGTGG+GGG | + | chr8.4:47675441-47675460 | None:intergenic | 60.0% | |
| GGTTGAGGATTTGGCGGCGA+CGG | + | chr8.4:47675519-47675538 | None:intergenic | 60.0% | |
| GTGGACCCATTTCTGCTCGC+TGG | + | chr8.4:47675552-47675571 | None:intergenic | 60.0% | |
| TGGGGTGCGAAAGTGGAGAG+TGG | + | chr8.4:47675444-47675463 | None:intergenic | 60.0% | |
| TGGGGTTTAGGGGGGATGGA+GGG | + | chr8.4:47675478-47675497 | None:intergenic | 60.0% | |
| TTTGGCGGCGACGGTGAAGA+TGG | + | chr8.4:47675510-47675529 | None:intergenic | 60.0% | |
| ! | ATGGTGGGGTGGGGTTTAGG+GGG | + | chr8.4:47675487-47675506 | None:intergenic | 60.0% |
| ! | TGACGGTAGAGGGTTGGCGA+TGG | + | chr8.4:47675394-47675413 | None:intergenic | 60.0% |
| !! | CTGCTCGCTGGCTTTGTCAG+GGG | + | chr8.4:47675540-47675559 | None:intergenic | 60.0% |
| !! | GAGTGGGTGGTGACGGTAGA+GGG | + | chr8.4:47675404-47675423 | None:intergenic | 60.0% |
| !! | GATGGTGGGGTGGGGTTTAG+GGG | + | chr8.4:47675488-47675507 | None:intergenic | 60.0% |
| !! | GCTGGCTTTGTCAGGGGTTG+AGG | + | chr8.4:47675534-47675553 | None:intergenic | 60.0% |
| !! | GGATGGTGGGGTGGGGTTTA+GGG | + | chr8.4:47675489-47675508 | None:intergenic | 60.0% |
| !! | GGTGAAGATGGATGGTGGGG+TGG | + | chr8.4:47675498-47675517 | None:intergenic | 60.0% |
| !! | TGGATGGTGGGGTGGGGTTT+AGG | + | chr8.4:47675490-47675509 | None:intergenic | 60.0% |
| GATGGAGGGCGGAGGAAGGA+TGG | + | chr8.4:47675464-47675483 | None:intergenic | 65.0% | |
| GCGGCGACGGTGAAGATGGA+TGG | + | chr8.4:47675506-47675525 | None:intergenic | 65.0% | |
| GGTTTAGGGGGGATGGAGGG+CGG | + | chr8.4:47675475-47675494 | None:intergenic | 65.0% | |
| GTGGGGTTTAGGGGGGATGG+AGG | + | chr8.4:47675479-47675498 | None:intergenic | 65.0% | |
| TGGAGGGCGGAGGAAGGATG+GGG | + | chr8.4:47675462-47675481 | None:intergenic | 65.0% | |
| TGGTGGGGTGGGGTTTAGGG+GGG | + | chr8.4:47675486-47675505 | None:intergenic | 65.0% | |
| !! | GGAGTGGGTGGTGACGGTAG+AGG | + | chr8.4:47675405-47675424 | None:intergenic | 65.0% |
| !! | GGGTGGTGACGGTAGAGGGT+TGG | + | chr8.4:47675400-47675419 | None:intergenic | 65.0% |
| GGGGTGGGGTTTAGGGGGGA+TGG | + | chr8.4:47675482-47675501 | None:intergenic | 70.0% | |
| TTAGGGGGGATGGAGGGCGG+AGG | + | chr8.4:47675472-47675491 | None:intergenic | 70.0% | |
| GGGGGATGGAGGGCGGAGGA+AGG | + | chr8.4:47675468-47675487 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 47675347 | 47675787 | 47675347 | ID=MS.gene34225 |
| chr8.4 | mRNA | 47675347 | 47675787 | 47675347 | ID=MS.gene34225.t1;Parent=MS.gene34225 |
| chr8.4 | exon | 47675347 | 47675787 | 47675347 | ID=MS.gene34225.t1.exon1;Parent=MS.gene34225.t1 |
| chr8.4 | CDS | 47675347 | 47675787 | 47675347 | ID=cds.MS.gene34225.t1;Parent=MS.gene34225.t1 |
| Gene Sequence |
| Protein sequence |
