Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35212.t1 | KEH31436.1 | 95.2 | 188 | 8 | 1 | 1 | 187 | 34 | 221 | 1.50E-95 | 359 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35212.t1 | Q9SCY2 | 57.9 | 197 | 65 | 5 | 1 | 187 | 1 | 189 | 3.2e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35212.t1 | A0A072UQ15 | 95.2 | 188 | 8 | 1 | 1 | 187 | 34 | 221 | 1.1e-95 | 359.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene35212 | 0.809688 | 1.67E-50 | -1.69E-46 |
| MS.gene049173 | MS.gene35212 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene35212 | 0.835712 | 1.43E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene35212 | 0.829802 | 4.20E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene35212 | 0.865331 | 6.38E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene35212 | 0.860675 | 1.75E-63 | -1.69E-46 |
| MS.gene049427 | MS.gene35212 | 0.836229 | 1.06E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene35212 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene35212 | 0.812318 | 4.50E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene35212 | 0.817984 | 2.48E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene35212 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene35212 | 0.878385 | 2.93E-69 | -1.69E-46 |
| MS.gene050165 | MS.gene35212 | 0.879958 | 8.14E-70 | -1.69E-46 |
| MS.gene050333 | MS.gene35212 | 0.841166 | 5.60E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene35212 | 0.819862 | 9.29E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene35212 | 0.838973 | 2.09E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene35212 | 0.839583 | 1.45E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene35212 | 0.844013 | 9.83E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene35212 | 0.813218 | 2.86E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene35212 | 0.823508 | 1.33E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene35212 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene35212 | 0.809599 | 1.75E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene35212 | 0.840987 | 6.25E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene35212 | 0.820392 | 7.03E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene35212 | 0.823202 | 1.57E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene35212 | 0.849924 | 2.37E-60 | -1.69E-46 |
| MS.gene051317 | MS.gene35212 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene35212 | 0.810843 | 9.42E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene35212 | 0.800847 | 1.19E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene35212 | 0.892398 | 1.65E-74 | -1.69E-46 |
| MS.gene051858 | MS.gene35212 | 0.83762 | 4.67E-57 | -1.69E-46 |
| MS.gene051949 | MS.gene35212 | 0.836109 | 1.13E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene35212 | 0.836336 | 9.93E-57 | -1.69E-46 |
| MS.gene052290 | MS.gene35212 | 0.810274 | 1.25E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene35212 | 0.853445 | 2.38E-61 | -1.69E-46 |
| MS.gene052615 | MS.gene35212 | 0.830421 | 2.96E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene35212 | 0.836448 | 9.30E-57 | -1.69E-46 |
| MS.gene052872 | MS.gene35212 | 0.83957 | 1.46E-57 | -1.69E-46 |
| MS.gene052916 | MS.gene35212 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene35212 | 0.860786 | 1.62E-63 | -1.69E-46 |
| MS.gene053207 | MS.gene35212 | 0.813836 | 2.09E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene35212 | 0.852238 | 5.26E-61 | -1.69E-46 |
| MS.gene053286 | MS.gene35212 | 0.851526 | 8.38E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene35212 | 0.828294 | 9.74E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene35212 | 0.816591 | 5.11E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene35212 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene35212 | 0.883836 | 3.20E-71 | -1.69E-46 |
| MS.gene05470 | MS.gene35212 | 0.806245 | 9.03E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene35212 | 0.841245 | 5.34E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene35212 | 0.805488 | 1.30E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene35212 | 0.844731 | 6.31E-59 | -1.69E-46 |
| MS.gene055397 | MS.gene35212 | 0.87178 | 5.27E-67 | -1.69E-46 |
| MS.gene055499 | MS.gene35212 | 0.843277 | 1.55E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene35212 | 0.824954 | 6.10E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene35212 | 0.819008 | 1.46E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene35212 | 0.830942 | 2.21E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene35212 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene055776 | MS.gene35212 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene35212 | 0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene35212 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene056083 | MS.gene35212 | 0.850653 | 1.48E-60 | -1.69E-46 |
| MS.gene056374 | MS.gene35212 | 0.859084 | 5.28E-63 | -1.69E-46 |
| MS.gene056504 | MS.gene35212 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene35212 | 0.810081 | 1.38E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene35212 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene35212 | 0.864193 | 1.45E-64 | -1.69E-46 |
| MS.gene056897 | MS.gene35212 | 0.834735 | 2.52E-56 | -1.69E-46 |
| MS.gene056946 | MS.gene35212 | 0.809642 | 1.71E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene35212 | 0.85758 | 1.48E-62 | -1.69E-46 |
| MS.gene057246 | MS.gene35212 | 0.822744 | 2.01E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene35212 | 0.818154 | 2.27E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene35212 | 0.8338 | 4.33E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene35212 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene35212 | 0.849633 | 2.85E-60 | -1.69E-46 |
| MS.gene058544 | MS.gene35212 | 0.808059 | 3.73E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene35212 | 0.869494 | 2.97E-66 | -1.69E-46 |
| MS.gene058773 | MS.gene35212 | 0.855663 | 5.42E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene35212 | 0.801052 | 1.08E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene35212 | 0.852963 | 3.27E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene35212 | 0.816908 | 4.34E-52 | -1.69E-46 |
| MS.gene059029 | MS.gene35212 | 0.836209 | 1.07E-56 | -1.69E-46 |
| MS.gene059079 | MS.gene35212 | 0.810824 | 9.51E-51 | -1.69E-46 |
| MS.gene059102 | MS.gene35212 | -0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene35212 | 0.812696 | 3.72E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene35212 | 0.877399 | 6.49E-69 | -1.69E-46 |
| MS.gene059718 | MS.gene35212 | 0.842065 | 3.25E-58 | -1.69E-46 |
| MS.gene059865 | MS.gene35212 | 0.83253 | 8.97E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene35212 | 0.831813 | 1.35E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene35212 | 0.817668 | 2.93E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene35212 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene35212 | 0.856866 | 2.41E-62 | -1.69E-46 |
| MS.gene060804 | MS.gene35212 | 0.806988 | 6.29E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene35212 | 0.827689 | 1.36E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene35212 | 0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene35212 | 0.815916 | 7.23E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene35212 | 0.854701 | 1.03E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene35212 | 0.822159 | 2.75E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35212.t1 | MTR_4g094785 | 95.213 | 188 | 8 | 1 | 1 | 187 | 34 | 221 | 1.37e-128 | 362 |
| MS.gene35212.t1 | MTR_8g091410 | 53.509 | 114 | 52 | 1 | 74 | 187 | 76 | 188 | 8.33e-35 | 122 |
| MS.gene35212.t1 | MTR_8g012380 | 50.633 | 79 | 33 | 1 | 103 | 181 | 46 | 118 | 3.35e-20 | 83.2 |
| MS.gene35212.t1 | MTR_5g008680 | 40.909 | 110 | 55 | 4 | 77 | 183 | 381 | 483 | 1.84e-16 | 77.4 |
| MS.gene35212.t1 | MTR_4g068190 | 41.414 | 99 | 50 | 2 | 78 | 176 | 103 | 193 | 9.78e-14 | 67.8 |
| MS.gene35212.t1 | MTR_8g080980 | 41.333 | 75 | 38 | 1 | 107 | 181 | 56 | 124 | 7.49e-12 | 63.9 |
| MS.gene35212.t1 | MTR_7g053470 | 40.000 | 75 | 39 | 1 | 107 | 181 | 52 | 120 | 1.16e-11 | 63.5 |
| MS.gene35212.t1 | MTR_8g012340 | 41.333 | 75 | 38 | 1 | 107 | 181 | 58 | 126 | 2.15e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35212.t1 | AT5G45680 | 58.376 | 197 | 64 | 5 | 1 | 187 | 1 | 189 | 4.34e-71 | 215 |
| MS.gene35212.t1 | AT4G39710 | 52.830 | 106 | 50 | 0 | 82 | 187 | 87 | 192 | 5.60e-35 | 123 |
| MS.gene35212.t1 | AT4G39710 | 52.830 | 106 | 50 | 0 | 82 | 187 | 87 | 192 | 5.60e-35 | 123 |
| MS.gene35212.t1 | AT4G39710 | 54.430 | 79 | 36 | 0 | 82 | 160 | 87 | 165 | 1.48e-25 | 98.2 |
| MS.gene35212.t1 | AT5G48580 | 51.899 | 79 | 32 | 1 | 103 | 181 | 48 | 120 | 1.48e-20 | 84.7 |
| MS.gene35212.t1 | AT3G25220 | 50.633 | 79 | 33 | 1 | 103 | 181 | 48 | 120 | 8.79e-20 | 82.4 |
| MS.gene35212.t1 | AT4G25340 | 39.130 | 115 | 60 | 4 | 71 | 182 | 351 | 458 | 9.07e-18 | 81.3 |
| MS.gene35212.t1 | AT5G05420 | 47.059 | 85 | 37 | 3 | 100 | 183 | 49 | 126 | 5.87e-17 | 74.7 |
| MS.gene35212.t1 | AT2G43560 | 45.745 | 94 | 43 | 2 | 78 | 171 | 41 | 126 | 2.65e-15 | 70.9 |
| MS.gene35212.t1 | AT2G43560 | 45.745 | 94 | 43 | 2 | 78 | 171 | 97 | 182 | 3.06e-15 | 72.0 |
| MS.gene35212.t1 | AT5G48570 | 34.711 | 121 | 59 | 5 | 71 | 181 | 23 | 133 | 9.98e-13 | 66.6 |
| MS.gene35212.t1 | AT3G10060 | 36.290 | 124 | 64 | 4 | 83 | 198 | 99 | 215 | 1.10e-11 | 62.4 |
| MS.gene35212.t1 | AT3G60370 | 38.202 | 89 | 49 | 1 | 87 | 175 | 118 | 200 | 1.45e-11 | 62.0 |
| MS.gene35212.t1 | AT3G60370 | 38.202 | 89 | 49 | 1 | 87 | 175 | 147 | 229 | 1.95e-11 | 62.0 |
| MS.gene35212.t1 | AT3G25230 | 40.000 | 75 | 39 | 1 | 107 | 181 | 57 | 125 | 2.37e-11 | 62.8 |
| MS.gene35212.t1 | AT3G25230 | 40.000 | 75 | 39 | 1 | 107 | 181 | 57 | 125 | 2.85e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGCTTCCTCCAGAATT+TGG | 0.175545 | 4.4:-18626075 | MS.gene35212:CDS |
| ATAGGCCTCTCCTTGAGTTT+TGG | 0.268135 | 4.4:-18627102 | MS.gene35212:CDS |
| CACTGGTCCTCAGGCTGTTA+AGG | 0.288082 | 4.4:-18626965 | MS.gene35212:CDS |
| GCTGTTGCAGTGGGTATTAT+TGG | 0.296220 | 4.4:+18627057 | None:intergenic |
| TTGTTGAAGTGGTTCTTATA+AGG | 0.296962 | 4.4:-18625925 | MS.gene35212:intron |
| CTTGAGCCATATCCAAATTC+TGG | 0.313714 | 4.4:+18626063 | None:intergenic |
| TCCTATTGTGATAAAATTGT+AGG | 0.321006 | 4.4:-18626988 | MS.gene35212:CDS |
| TGTTAAGGGACAGCTTATTA+AGG | 0.328384 | 4.4:-18626950 | MS.gene35212:intron |
| GGAATTCCTCCTATGCTTAC+AGG | 0.339705 | 4.4:-18626201 | MS.gene35212:intron |
| CTTCCTCCAGAATTTGGATA+TGG | 0.340666 | 4.4:-18626069 | MS.gene35212:CDS |
| AGGCAAGTCCCAACTGAATA+TGG | 0.354350 | 4.4:+18627246 | None:intergenic |
| GGCACATTATGTGGGGAGAT+TGG | 0.379326 | 4.4:-18626717 | MS.gene35212:CDS |
| TGTCTTCGGTTGGTGCTAAT+AGG | 0.383900 | 4.4:-18625887 | MS.gene35212:CDS |
| GAATTAACAGTGGCTCCTTC+AGG | 0.416975 | 4.4:-18627015 | MS.gene35212:CDS |
| ATATTGTTAGGCACATTATG+TGG | 0.442668 | 4.4:-18626726 | MS.gene35212:intron |
| TTGAAAAGAAGAGAAGCAAT+AGG | 0.456182 | 4.4:-18627120 | MS.gene35212:CDS |
| GTTGCAATAAAGAATGTAGA+AGG | 0.459506 | 4.4:+18627079 | None:intergenic |
| AATTGTAGGCACTGGTCCTC+AGG | 0.460071 | 4.4:-18626974 | MS.gene35212:CDS |
| ACCACCAGTTCTTGTACAAA+AGG | 0.473460 | 4.4:-18627151 | MS.gene35212:CDS |
| ACTGGTCCTCAGGCTGTTAA+GGG | 0.476472 | 4.4:-18626964 | MS.gene35212:CDS |
| CTTACGTTTCGTGTTGGTGT+TGG | 0.485835 | 4.4:-18626650 | MS.gene35212:CDS |
| CACTGGCACCATATTCAGTT+GGG | 0.488962 | 4.4:-18627254 | MS.gene35212:CDS |
| TGCTTCAGCTGCTGTTGCAG+TGG | 0.492286 | 4.4:+18627047 | None:intergenic |
| TCAAGAGGAGCTGGTTGTAA+AGG | 0.503208 | 4.4:-18626045 | MS.gene35212:CDS |
| CAAGTACCTGTAAGCATAGG+AGG | 0.508846 | 4.4:+18626195 | None:intergenic |
| TAGCACCAACCGAAGACAAA+AGG | 0.511216 | 4.4:+18625892 | None:intergenic |
| GGATATGGCTCAAGAGGAGC+TGG | 0.513862 | 4.4:-18626054 | MS.gene35212:CDS |
| TGTGATAAAATTGTAGGCAC+TGG | 0.515703 | 4.4:-18626982 | MS.gene35212:CDS |
| TCATATAGGTTATCAAAGGA+TGG | 0.519848 | 4.4:-18626248 | MS.gene35212:intron |
| GTTATCAAAGGATGGGATGT+AGG | 0.520177 | 4.4:-18626240 | MS.gene35212:CDS |
| TTGAACAGAACATGTTGTTA+CGG | 0.529455 | 4.4:+18627185 | None:intergenic |
| TATTGTTAGGCACATTATGT+GGG | 0.541025 | 4.4:-18626725 | MS.gene35212:intron |
| GGTTCTTATAAGGATTATGT+TGG | 0.541339 | 4.4:-18625915 | MS.gene35212:CDS |
| ACACCAACACGAAACGTAAG+TGG | 0.541410 | 4.4:+18626653 | None:intergenic |
| TCACTGGCACCATATTCAGT+TGG | 0.542595 | 4.4:-18627255 | MS.gene35212:CDS |
| AAGCCACTTACGTTTCGTGT+TGG | 0.554408 | 4.4:-18626656 | MS.gene35212:CDS |
| TGGTGCTAATAGGTCACTCT+AGG | 0.555452 | 4.4:-18625877 | None:intergenic |
| GCTTCAGCTGCTGTTGCAGT+GGG | 0.555863 | 4.4:+18627048 | None:intergenic |
| CAAGAACTGGTGGTTGCTGT+TGG | 0.563530 | 4.4:+18627160 | None:intergenic |
| GAATTTGGATATGGCTCAAG+AGG | 0.566038 | 4.4:-18626060 | MS.gene35212:CDS |
| TTCAGTGGAAATGAGTTCAC+TGG | 0.566498 | 4.4:-18627271 | None:intergenic |
| ATGTAGAAGGCCAAAACTCA+AGG | 0.566539 | 4.4:+18627092 | None:intergenic |
| TTTGGGGCTGCAAGGAGGTG+AGG | 0.573241 | 4.4:+18627226 | None:intergenic |
| CATATAGGTTATCAAAGGAT+GGG | 0.577493 | 4.4:-18626247 | MS.gene35212:intron |
| TATGTGGGGAGATTGGAGAA+TGG | 0.578143 | 4.4:-18626710 | MS.gene35212:CDS |
| GTTTCGTGTTGGTGTTGGAG+AGG | 0.592455 | 4.4:-18626645 | MS.gene35212:intron |
| TCACAATAGGAAAGGCCTGA+AGG | 0.597137 | 4.4:+18627000 | None:intergenic |
| TGAATCATATAGGTTATCAA+AGG | 0.598952 | 4.4:-18626252 | MS.gene35212:intron |
| AAACAAGTACCTGTAAGCAT+AGG | 0.604775 | 4.4:+18626192 | None:intergenic |
| AGAGGAGCTGGTTGTAAAGG+AGG | 0.607049 | 4.4:-18626042 | MS.gene35212:CDS |
| TTCGACAGCAGCTACAACCG+TGG | 0.611929 | 4.4:-18626680 | MS.gene35212:CDS |
| AGCTGTCCCTTAACAGCCTG+AGG | 0.613685 | 4.4:+18626958 | None:intergenic |
| GGAGCCACTGTTAATTCACA+TGG | 0.627997 | 4.4:+18627021 | None:intergenic |
| ATGTTGTTACGGAAATCGAA+TGG | 0.632964 | 4.4:+18627196 | None:intergenic |
| ATTGTTAGGCACATTATGTG+GGG | 0.643650 | 4.4:-18626724 | MS.gene35212:intron |
| GAGCCATATCCAAATTCTGG+AGG | 0.647151 | 4.4:+18626066 | None:intergenic |
| GAAGGCCAAAACTCAAGGAG+AGG | 0.647900 | 4.4:+18627097 | None:intergenic |
| GAAACGTAAGTGGCTTGCCA+CGG | 0.654089 | 4.4:+18626663 | None:intergenic |
| AGTTCCATGTGAATTAACAG+TGG | 0.724289 | 4.4:-18627025 | MS.gene35212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAAAAATAGTAATAAA+TGG | + | chr4.4:18626241-18626260 | None:intergenic | 10.0% |
| !!! | TTATTACTATTTTTTATAGA+AGG | - | chr4.4:18626242-18626261 | MS.gene35212:CDS | 10.0% |
| !! | AAATTATTCATGAATCATAT+AGG | - | chr4.4:18626877-18626896 | MS.gene35212:intron | 15.0% |
| !! | CATTTATATCTAATATTGTT+AGG | - | chr4.4:18626401-18626420 | MS.gene35212:intron | 15.0% |
| !! | TATCAAATTTGATCTTTATA+TGG | + | chr4.4:18627175-18627194 | None:intergenic | 15.0% |
| !!! | ATAGTTTTAAATTGATGTTA+CGG | - | chr4.4:18626533-18626552 | MS.gene35212:intron | 15.0% |
| !!! | GTAAATTCTATTTTGTTTTA+TGG | - | chr4.4:18626981-18627000 | MS.gene35212:CDS | 15.0% |
| !! | AAAAGTAGAGAAAAGTAAAA+TGG | - | chr4.4:18626277-18626296 | MS.gene35212:intron | 20.0% |
| !!! | AAGATCAAATTTGATAACTT+TGG | - | chr4.4:18627179-18627198 | MS.gene35212:CDS | 20.0% |
| !!! | GTAACATCAATTTAAAACTA+TGG | + | chr4.4:18626534-18626553 | None:intergenic | 20.0% |
| !!! | GTTTTAATGTTATTTCATCA+AGG | - | chr4.4:18626324-18626343 | MS.gene35212:intron | 20.0% |
| !!! | TTTTATTCTTTTCTTACGTT+AGG | - | chr4.4:18627028-18627047 | MS.gene35212:CDS | 20.0% |
| ! | GCTCAAAATTCTTTATATTG+CGG | - | chr4.4:18626634-18626653 | MS.gene35212:intron | 25.0% |
| ! | TCCTATTGTGATAAAATTGT+AGG | - | chr4.4:18626151-18626170 | MS.gene35212:intron | 25.0% |
| ! | TGAATCATATAGGTTATCAA+AGG | - | chr4.4:18626887-18626906 | MS.gene35212:intron | 25.0% |
| ! | TGACAACAAATGACAAAAAA+TGG | + | chr4.4:18626218-18626237 | None:intergenic | 25.0% |
| ! | TGTAACAAGTAACAACTTAT+AGG | + | chr4.4:18626818-18626837 | None:intergenic | 25.0% |
| !! | AAATCGAATGGTTAAGTTTT+TGG | + | chr4.4:18625934-18625953 | None:intergenic | 25.0% |
| !! | AATCGAATGGTTAAGTTTTT+GGG | + | chr4.4:18625933-18625952 | None:intergenic | 25.0% |
| !! | CAATTTTATCACAATAGGAA+AGG | + | chr4.4:18626150-18626169 | None:intergenic | 25.0% |
| !! | TTTTAAATTGCGGTAACAAA+TGG | + | chr4.4:18626676-18626695 | None:intergenic | 25.0% |
| !!! | AGAATCATGGTTTTAAATTG+CGG | + | chr4.4:18626686-18626705 | None:intergenic | 25.0% |
| !!! | CTAGTTAGTTGTTTTTTCAT+TGG | + | chr4.4:18626360-18626379 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAACATTGAGCA+TGG | + | chr4.4:18626863-18626882 | None:intergenic | 25.0% |
| AGCTCTTATGAGATATTGAT+TGG | - | chr4.4:18626766-18626785 | MS.gene35212:intron | 30.0% | |
| ATATTGTTAGGCACATTATG+TGG | - | chr4.4:18626413-18626432 | MS.gene35212:intron | 30.0% | |
| CATATAGGTTATCAAAGGAT+GGG | - | chr4.4:18626892-18626911 | MS.gene35212:intron | 30.0% | |
| GACAATGATGGCAAATTAAA+AGG | + | chr4.4:18627153-18627172 | None:intergenic | 30.0% | |
| GATCTTTATATGGACAATGA+TGG | + | chr4.4:18627165-18627184 | None:intergenic | 30.0% | |
| GGTTCTTATAAGGATTATGT+TGG | - | chr4.4:18627224-18627243 | MS.gene35212:CDS | 30.0% | |
| GTTGCAATAAAGAATGTAGA+AGG | + | chr4.4:18626063-18626082 | None:intergenic | 30.0% | |
| TATTGTTAGGCACATTATGT+GGG | - | chr4.4:18626414-18626433 | MS.gene35212:intron | 30.0% | |
| TCATATAGGTTATCAAAGGA+TGG | - | chr4.4:18626891-18626910 | MS.gene35212:intron | 30.0% | |
| TGATGCTATTGATAGAATCA+TGG | + | chr4.4:18626699-18626718 | None:intergenic | 30.0% | |
| TTGAAAAGAAGAGAAGCAAT+AGG | - | chr4.4:18626019-18626038 | MS.gene35212:intron | 30.0% | |
| TTGAACAGAACATGTTGTTA+CGG | + | chr4.4:18625957-18625976 | None:intergenic | 30.0% | |
| TTGTTGAAGTGGTTCTTATA+AGG | - | chr4.4:18627214-18627233 | MS.gene35212:CDS | 30.0% | |
| ! | ATCGAATGGTTAAGTTTTTG+GGG | + | chr4.4:18625932-18625951 | None:intergenic | 30.0% |
| ! | CTCATAAGAGCTTTACATTT+TGG | + | chr4.4:18626758-18626777 | None:intergenic | 30.0% |
| ! | GCCTACAATTTTATCACAAT+AGG | + | chr4.4:18626155-18626174 | None:intergenic | 30.0% |
| ! | TATTCTTTTCTTACGTTAGG+AGG | - | chr4.4:18627031-18627050 | MS.gene35212:CDS | 30.0% |
| ! | TATTTTGCACTTTGTTGAAG+TGG | - | chr4.4:18627203-18627222 | MS.gene35212:CDS | 30.0% |
| AAACAAGTACCTGTAAGCAT+AGG | + | chr4.4:18626950-18626969 | None:intergenic | 35.0% | |
| AGTTCCATGTGAATTAACAG+TGG | - | chr4.4:18626114-18626133 | MS.gene35212:intron | 35.0% | |
| ATGTTGTTACGGAAATCGAA+TGG | + | chr4.4:18625946-18625965 | None:intergenic | 35.0% | |
| ATTGTTAGGCACATTATGTG+GGG | - | chr4.4:18626415-18626434 | MS.gene35212:intron | 35.0% | |
| CTTTATATTGCGGATGCATT+AGG | - | chr4.4:18626644-18626663 | MS.gene35212:intron | 35.0% | |
| TGTGATAAAATTGTAGGCAC+TGG | - | chr4.4:18626157-18626176 | MS.gene35212:intron | 35.0% | |
| TGTTAAGGGACAGCTTATTA+AGG | - | chr4.4:18626189-18626208 | MS.gene35212:intron | 35.0% | |
| ! | TTCTCCTTTTGTACAAGAAC+TGG | + | chr4.4:18625995-18626014 | None:intergenic | 35.0% |
| !!! | TTATGTTGGCCTTTTGTCTT+CGG | - | chr4.4:18627238-18627257 | MS.gene35212:CDS | 35.0% |
| ACCACCAGTTCTTGTACAAA+AGG | - | chr4.4:18625988-18626007 | MS.gene35212:intron | 40.0% | |
| ATGTAGAAGGCCAAAACTCA+AGG | + | chr4.4:18626050-18626069 | None:intergenic | 40.0% | |
| CTTCCTCCAGAATTTGGATA+TGG | - | chr4.4:18627070-18627089 | MS.gene35212:CDS | 40.0% | |
| CTTGAGCCATATCCAAATTC+TGG | + | chr4.4:18627079-18627098 | None:intergenic | 40.0% | |
| GAATTTGGATATGGCTCAAG+AGG | - | chr4.4:18627079-18627098 | MS.gene35212:CDS | 40.0% | |
| GAGCATGGCATATATATCAG+TGG | + | chr4.4:18626848-18626867 | None:intergenic | 40.0% | |
| GTTATCAAAGGATGGGATGT+AGG | - | chr4.4:18626899-18626918 | MS.gene35212:intron | 40.0% | |
| TATAGACCAGCGAGAAAATG+TGG | - | chr4.4:18626562-18626581 | MS.gene35212:intron | 40.0% | |
| TTGAAGCTTCCTCCAGAATT+TGG | - | chr4.4:18627064-18627083 | MS.gene35212:CDS | 40.0% | |
| ! | AAGCGCAATGTTGACTACAT+TGG | + | chr4.4:18626588-18626607 | None:intergenic | 40.0% |
| ! | TCCTTTTGTACAAGAACTGG+TGG | + | chr4.4:18625992-18626011 | None:intergenic | 40.0% |
| !! | GTAGGCATTTTAGGAGATGA+TGG | - | chr4.4:18626917-18626936 | MS.gene35212:intron | 40.0% |
| AAGCCACTTACGTTTCGTGT+TGG | - | chr4.4:18626483-18626502 | MS.gene35212:intron | 45.0% | |
| ACACCAACACGAAACGTAAG+TGG | + | chr4.4:18626489-18626508 | None:intergenic | 45.0% | |
| AGGCAAGTCCCAACTGAATA+TGG | + | chr4.4:18625896-18625915 | None:intergenic | 45.0% | |
| CAAGTACCTGTAAGCATAGG+AGG | + | chr4.4:18626947-18626966 | None:intergenic | 45.0% | |
| CACTGGCACCATATTCAGTT+GGG | - | chr4.4:18625885-18625904 | MS.gene35212:CDS | 45.0% | |
| GAATTAACAGTGGCTCCTTC+AGG | - | chr4.4:18626124-18626143 | MS.gene35212:intron | 45.0% | |
| GAGCCATATCCAAATTCTGG+AGG | + | chr4.4:18627076-18627095 | None:intergenic | 45.0% | |
| GCTGTTGCAGTGGGTATTAT+TGG | + | chr4.4:18626085-18626104 | None:intergenic | 45.0% | |
| GGAATTCCTCCTATGCTTAC+AGG | - | chr4.4:18626938-18626957 | MS.gene35212:intron | 45.0% | |
| GGAGCCACTGTTAATTCACA+TGG | + | chr4.4:18626121-18626140 | None:intergenic | 45.0% | |
| TAGCACCAACCGAAGACAAA+AGG | + | chr4.4:18627250-18627269 | None:intergenic | 45.0% | |
| TATGTGGGGAGATTGGAGAA+TGG | - | chr4.4:18626429-18626448 | MS.gene35212:intron | 45.0% | |
| TCAACATTGCGCTTGTGACA+CGG | - | chr4.4:18626594-18626613 | MS.gene35212:intron | 45.0% | |
| TCAAGAGGAGCTGGTTGTAA+AGG | - | chr4.4:18627094-18627113 | MS.gene35212:CDS | 45.0% | |
| TCACAATAGGAAAGGCCTGA+AGG | + | chr4.4:18626142-18626161 | None:intergenic | 45.0% | |
| TCACTGGCACCATATTCAGT+TGG | - | chr4.4:18625884-18625903 | MS.gene35212:CDS | 45.0% | |
| ! | ATAGGCCTCTCCTTGAGTTT+TGG | - | chr4.4:18626037-18626056 | MS.gene35212:intron | 45.0% |
| ! | CTTACGTTTCGTGTTGGTGT+TGG | - | chr4.4:18626489-18626508 | MS.gene35212:intron | 45.0% |
| ! | GGATGGGATGTAGGCATTTT+AGG | - | chr4.4:18626908-18626927 | MS.gene35212:intron | 45.0% |
| !! | TGTCTTCGGTTGGTGCTAAT+AGG | - | chr4.4:18627252-18627271 | MS.gene35212:CDS | 45.0% |
| !!! | GTTAAGTTTTTGGGGCTGCA+AGG | + | chr4.4:18625924-18625943 | None:intergenic | 45.0% |
| ACTGGTCCTCAGGCTGTTAA+GGG | - | chr4.4:18626175-18626194 | MS.gene35212:intron | 50.0% | |
| AGAGGAGCTGGTTGTAAAGG+AGG | - | chr4.4:18627097-18627116 | MS.gene35212:CDS | 50.0% | |
| CAAGAACTGGTGGTTGCTGT+TGG | + | chr4.4:18625982-18626001 | None:intergenic | 50.0% | |
| GAAGGCCAAAACTCAAGGAG+AGG | + | chr4.4:18626045-18626064 | None:intergenic | 50.0% | |
| GGCACATTATGTGGGGAGAT+TGG | - | chr4.4:18626422-18626441 | MS.gene35212:intron | 50.0% | |
| ! | CATTGGCCACATTTTCTCGC+TGG | + | chr4.4:18626571-18626590 | None:intergenic | 50.0% |
| ! | GAAACGTAAGTGGCTTGCCA+CGG | + | chr4.4:18626479-18626498 | None:intergenic | 50.0% |
| !! | AATTGTAGGCACTGGTCCTC+AGG | - | chr4.4:18626165-18626184 | MS.gene35212:intron | 50.0% |
| !! | GTTTCGTGTTGGTGTTGGAG+AGG | - | chr4.4:18626494-18626513 | MS.gene35212:intron | 50.0% |
| !!! | AAGTTTTTGGGGCTGCAAGG+AGG | + | chr4.4:18625921-18625940 | None:intergenic | 50.0% |
| !!! | GTTGGCCTTTTGTCTTCGGT+TGG | - | chr4.4:18627242-18627261 | MS.gene35212:CDS | 50.0% |
| AGCTGTCCCTTAACAGCCTG+AGG | + | chr4.4:18626184-18626203 | None:intergenic | 55.0% | |
| CACTGGTCCTCAGGCTGTTA+AGG | - | chr4.4:18626174-18626193 | MS.gene35212:intron | 55.0% | |
| GCTTCAGCTGCTGTTGCAGT+GGG | + | chr4.4:18626094-18626113 | None:intergenic | 55.0% | |
| GGATATGGCTCAAGAGGAGC+TGG | - | chr4.4:18627085-18627104 | MS.gene35212:CDS | 55.0% | |
| TGCTTCAGCTGCTGTTGCAG+TGG | + | chr4.4:18626095-18626114 | None:intergenic | 55.0% | |
| TTCGACAGCAGCTACAACCG+TGG | - | chr4.4:18626459-18626478 | MS.gene35212:intron | 55.0% | |
| TTGCGCTTGTGACACGGTTC+TGG | - | chr4.4:18626600-18626619 | MS.gene35212:intron | 55.0% | |
| ! | TTTGGGGCTGCAAGGAGGTG+AGG | + | chr4.4:18625916-18625935 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18625878 | 18627283 | 18625878 | ID=MS.gene35212 |
| chr4.4 | mRNA | 18625878 | 18627283 | 18625878 | ID=MS.gene35212.t1;Parent=MS.gene35212 |
| chr4.4 | exon | 18626951 | 18627283 | 18626951 | ID=MS.gene35212.t1.exon1;Parent=MS.gene35212.t1 |
| chr4.4 | CDS | 18626951 | 18627283 | 18626951 | ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1 |
| chr4.4 | exon | 18626646 | 18626738 | 18626646 | ID=MS.gene35212.t1.exon2;Parent=MS.gene35212.t1 |
| chr4.4 | CDS | 18626646 | 18626738 | 18626646 | ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1 |
| chr4.4 | exon | 18626202 | 18626262 | 18626202 | ID=MS.gene35212.t1.exon3;Parent=MS.gene35212.t1 |
| chr4.4 | CDS | 18626202 | 18626262 | 18626202 | ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1 |
| chr4.4 | exon | 18626039 | 18626111 | 18626039 | ID=MS.gene35212.t1.exon4;Parent=MS.gene35212.t1 |
| chr4.4 | CDS | 18626039 | 18626111 | 18626039 | ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1 |
| chr4.4 | exon | 18625878 | 18625938 | 18625878 | ID=MS.gene35212.t1.exon5;Parent=MS.gene35212.t1 |
| chr4.4 | CDS | 18625878 | 18625938 | 18625878 | ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1 |
| Gene Sequence |
| Protein sequence |
