AlfalfaGEDB | MS.gene35212

M. sativa cultivar XinJiangDaYe / MS.gene35212

KEGG: K01802
GO: GO:0003674 GO:0003755 GO:0003824 GO:0016853 GO:0016859 GO:0140096
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35212.t1	KEH31436.1	95.2	188	8	1	1	187	34	221	1.50E-95	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35212.t1	Q9SCY2	57.9	197	65	5	1	187	1	189	3.2e-54	213.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35212.t1	A0A072UQ15	95.2	188	8	1	1	187	34	221	1.1e-95	359.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene35212	0.809688	1.67E-50	-1.69E-46
MS.gene049173	MS.gene35212	0.805287	1.44E-49	-1.69E-46
MS.gene049217	MS.gene35212	0.835712	1.43E-56	-1.69E-46
MS.gene049222	MS.gene35212	0.829802	4.20E-55	-1.69E-46
MS.gene049285	MS.gene35212	0.865331	6.38E-65	-1.69E-46
MS.gene049320	MS.gene35212	0.860675	1.75E-63	-1.69E-46
MS.gene049427	MS.gene35212	0.836229	1.06E-56	-1.69E-46
MS.gene049609	MS.gene35212	0.808576	2.89E-50	-1.69E-46
MS.gene049614	MS.gene35212	0.812318	4.50E-51	-1.69E-46
MS.gene049633	MS.gene35212	0.817984	2.48E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35212.t1	MTR_4g094785	95.213	188	8	1	1	187	34	221	1.37e-128	362
MS.gene35212.t1	MTR_8g091410	53.509	114	52	1	74	187	76	188	8.33e-35	122
MS.gene35212.t1	MTR_8g012380	50.633	79	33	1	103	181	46	118	3.35e-20	83.2
MS.gene35212.t1	MTR_5g008680	40.909	110	55	4	77	183	381	483	1.84e-16	77.4
MS.gene35212.t1	MTR_4g068190	41.414	99	50	2	78	176	103	193	9.78e-14	67.8
MS.gene35212.t1	MTR_8g080980	41.333	75	38	1	107	181	56	124	7.49e-12	63.9
MS.gene35212.t1	MTR_7g053470	40.000	75	39	1	107	181	52	120	1.16e-11	63.5
MS.gene35212.t1	MTR_8g012340	41.333	75	38	1	107	181	58	126	2.15e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35212.t1	AT5G45680	58.376	197	64	5	1	187	1	189	4.34e-71	215
MS.gene35212.t1	AT4G39710	52.830	106	50	0	82	187	87	192	5.60e-35	123
MS.gene35212.t1	AT4G39710	52.830	106	50	0	82	187	87	192	5.60e-35	123
MS.gene35212.t1	AT4G39710	54.430	79	36	0	82	160	87	165	1.48e-25	98.2
MS.gene35212.t1	AT5G48580	51.899	79	32	1	103	181	48	120	1.48e-20	84.7
MS.gene35212.t1	AT3G25220	50.633	79	33	1	103	181	48	120	8.79e-20	82.4
MS.gene35212.t1	AT4G25340	39.130	115	60	4	71	182	351	458	9.07e-18	81.3
MS.gene35212.t1	AT5G05420	47.059	85	37	3	100	183	49	126	5.87e-17	74.7
MS.gene35212.t1	AT2G43560	45.745	94	43	2	78	171	41	126	2.65e-15	70.9
MS.gene35212.t1	AT2G43560	45.745	94	43	2	78	171	97	182	3.06e-15	72.0

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Find 59 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTACCTGTAAGCAT+AGG	0.604775	4.4:+18626192	None:intergenic
AAGCCACTTACGTTTCGTGT+TGG	0.554408	4.4:-18626656	MS.gene35212:CDS
AATTGTAGGCACTGGTCCTC+AGG	0.460071	4.4:-18626974	MS.gene35212:CDS
ACACCAACACGAAACGTAAG+TGG	0.541410	4.4:+18626653	None:intergenic
ACCACCAGTTCTTGTACAAA+AGG	0.473460	4.4:-18627151	MS.gene35212:CDS
ACTGGTCCTCAGGCTGTTAA+GGG	0.476472	4.4:-18626964	MS.gene35212:CDS
AGAGGAGCTGGTTGTAAAGG+AGG	0.607049	4.4:-18626042	MS.gene35212:CDS
AGCTGTCCCTTAACAGCCTG+AGG	0.613685	4.4:+18626958	None:intergenic
AGGCAAGTCCCAACTGAATA+TGG	0.354350	4.4:+18627246	None:intergenic
AGTTCCATGTGAATTAACAG+TGG	0.724289	4.4:-18627025	MS.gene35212:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTCTTATGAGATATTGAT+TGG	-	chr4.4:18626766-18626785	MS.gene35212:intron	30.0%
ATATTGTTAGGCACATTATG+TGG	-	chr4.4:18626413-18626432	MS.gene35212:intron	30.0%
CATATAGGTTATCAAAGGAT+GGG	-	chr4.4:18626892-18626911	MS.gene35212:intron	30.0%
GACAATGATGGCAAATTAAA+AGG	+	chr4.4:18627153-18627172	None:intergenic	30.0%
GATCTTTATATGGACAATGA+TGG	+	chr4.4:18627165-18627184	None:intergenic	30.0%
GGTTCTTATAAGGATTATGT+TGG	-	chr4.4:18627224-18627243	MS.gene35212:CDS	30.0%
GTTGCAATAAAGAATGTAGA+AGG	+	chr4.4:18626063-18626082	None:intergenic	30.0%
TATTGTTAGGCACATTATGT+GGG	-	chr4.4:18626414-18626433	MS.gene35212:intron	30.0%
TCATATAGGTTATCAAAGGA+TGG	-	chr4.4:18626891-18626910	MS.gene35212:intron	30.0%
TGATGCTATTGATAGAATCA+TGG	+	chr4.4:18626699-18626718	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	18625878	18627283	18625878	ID=MS.gene35212
chr4.4	mRNA	18625878	18627283	18625878	ID=MS.gene35212.t1;Parent=MS.gene35212
chr4.4	exon	18626951	18627283	18626951	ID=MS.gene35212.t1.exon1;Parent=MS.gene35212.t1
chr4.4	CDS	18626951	18627283	18626951	ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1
chr4.4	exon	18626646	18626738	18626646	ID=MS.gene35212.t1.exon2;Parent=MS.gene35212.t1
chr4.4	CDS	18626646	18626738	18626646	ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1
chr4.4	exon	18626202	18626262	18626202	ID=MS.gene35212.t1.exon3;Parent=MS.gene35212.t1
chr4.4	CDS	18626202	18626262	18626202	ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1
chr4.4	exon	18626039	18626111	18626039	ID=MS.gene35212.t1.exon4;Parent=MS.gene35212.t1
chr4.4	CDS	18626039	18626111	18626039	ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1
chr4.4	exon	18625878	18625938	18625878	ID=MS.gene35212.t1.exon5;Parent=MS.gene35212.t1
chr4.4	CDS	18625878	18625938	18625878	ID=cds.MS.gene35212.t1;Parent=MS.gene35212.t1

Gene Sequence

>MS.gene35212

ATGAGTTCACTGGCACCATATTCAGTTGGGACTTGCCTCACCTCCTTGCAGCCCCAAAAACTTAACCATTCGATTTCCGTAACAACATGTTCTGTTCAAGTCCAACAGCAACCACCAGTTCTTGTACAAAAGGAGAATCAATTGAAAAGAAGAGAAGCAATAGGCCTCTCCTTGAGTTTTGGCCTTCTACATTCTTTATTGCAACCAATAATACCCACTGCAACAGCAGCTGAAGCAGTTCCATGTGAATTAACAGTGGCTCCTTCAGGCCTTTCCTATTGTGATAAAATTGTAGGCACTGGTCCTCAGGCTGTTAAGGGACAGCTTATTAAGGTAACCATTTTTTGTCATTTGTTGTCACCATTTATTACTATTTTTTATAGAAGGCATATATATGATAAAAGTAGAGAAAAGTAAAATGGAAATTATATTGATAATAAGATAATGTTTTAATGTTATTTCATCAAGGATACATATAACCAATGAAAAAACAACTAACTAGCGTAACTAACTTTGTAACTAACATTTATATCTAATATTGTTAGGCACATTATGTGGGGAGATTGGAGAATGGAAAAGTTTTCGACAGCAGCTACAACCGTGGCAAGCCACTTACGTTTCGTGTTGGTGTTGGAGAGGTATTATGATTATATCCATAGTTTTAAATTGATGTTACGGTAATAATATAGACCAGCGAGAAAATGTGGCCAATGTAGTCAACATTGCGCTTGTGACACGGTTCTGGTCTTGCACAGAGCTCAAAATTCTTTATATTGCGGATGCATTAGGCATTAGCCATTTGTTACCGCAATTTAAAACCATGATTCTATCAATAGCATCATAAGCACTGTTGTTAATAGATTATTTTGTTAATAAGCCAAAATGTAAAGCTCTTATGAGATATTGATTGGTGAAATCAGAAAATTGTTAATTTCTACCTATAAGTTGTTACTTGTTACAGAGTTCACCACTGATATATATGCCATGCTCAATGTTAACAAATTATTCATGAATCATATAGGTTATCAAAGGATGGGATGTAGGCATTTTAGGAGATGATGGAATTCCTCCTATGCTTACAGGTACTTGTTTTTTCAGTCACTGTAAATTCTATTTTGTTTTATGGATCATGACATGTTGAAGTGACATTTTTTATTCTTTTCTTACGTTAGGAGGTAAACGTACATTGAAGCTTCCTCCAGAATTTGGATATGGCTCAAGAGGAGCTGGTTGTAAAGGAGGCAAGTACTCTTTTTCTTCTTCTAAACAATACCTTTTAATTTGCCATCATTGTCCATATAAAGATCAAATTTGATAACTTTGGTTATTTTGCACTTTGTTGAAGTGGTTCTTATAAGGATTATGTTGGCCTTTTGTCTTCGGTTGGTGCTAATAGGTCACTCTAG

Protein sequence

>MS.gene35212.t1

MSSLAPYSVGTCLTSLQPQKLNHSISVTTCSVQVQQQPPVLVQKENQLKRREAIGLSLSFGLLHSLLQPIIPTATAAEAVPCELTVAPSGLSYCDKIVGTGPQAVKGQLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDVGILGDDGIPPMLTGGKRTLKLPPEFGYGSRGAGCKGGNGSYKDYVGLLSSVGANRSL