Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39933.t1 | XP_003590558.1 | 97.4 | 347 | 9 | 0 | 1 | 347 | 1 | 347 | 5.90E-198 | 699.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39933.t1 | Q9LY74 | 79.9 | 349 | 57 | 5 | 1 | 347 | 1 | 338 | 6.7e-158 | 558.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39933.t1 | G7ICQ0 | 97.4 | 347 | 9 | 0 | 1 | 347 | 1 | 347 | 4.3e-198 | 699.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene39933 | 0.832327 | 1.01E-55 | -1.69E-46 |
| MS.gene049173 | MS.gene39933 | 0.811384 | 7.19E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene39933 | 0.832314 | 1.01E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene39933 | 0.822179 | 2.72E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene39933 | 0.819864 | 9.29E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene39933 | 0.847811 | 9.13E-60 | -1.69E-46 |
| MS.gene049320 | MS.gene39933 | 0.843488 | 1.36E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene39933 | 0.824259 | 8.89E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene39933 | 0.834738 | 2.52E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene39933 | 0.837261 | 5.77E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene39933 | 0.802478 | 5.50E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene39933 | 0.807384 | 5.19E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene39933 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene39933 | 0.820242 | 7.61E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene39933 | 0.818233 | 2.18E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene39933 | 0.839523 | 1.51E-57 | -1.69E-46 |
| MS.gene050444 | MS.gene39933 | 0.806114 | 9.63E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene39933 | 0.819322 | 1.23E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene39933 | 0.825632 | 4.22E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene39933 | 0.829875 | 4.03E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene39933 | 0.801102 | 1.05E-48 | -1.69E-46 |
| MS.gene050612 | MS.gene39933 | 0.83851 | 2.76E-57 | -1.69E-46 |
| MS.gene050662 | MS.gene39933 | 0.824626 | 7.29E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene39933 | 0.83338 | 5.51E-56 | -1.69E-46 |
| MS.gene050686 | MS.gene39933 | 0.807595 | 4.68E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene39933 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene39933 | 0.869405 | 3.17E-66 | -1.69E-46 |
| MS.gene05080 | MS.gene39933 | 0.838757 | 2.38E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene39933 | 0.834961 | 2.21E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene39933 | 0.831258 | 1.85E-55 | -1.69E-46 |
| MS.gene050876 | MS.gene39933 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene39933 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene39933 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene39933 | 0.828784 | 7.41E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene39933 | 0.86416 | 1.48E-64 | -1.69E-46 |
| MS.gene051874 | MS.gene39933 | 0.850591 | 1.54E-60 | -1.69E-46 |
| MS.gene051949 | MS.gene39933 | 0.83335 | 5.61E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene39933 | 0.813451 | 2.54E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene39933 | 0.826166 | 3.15E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene39933 | 0.847246 | 1.31E-59 | -1.69E-46 |
| MS.gene052870 | MS.gene39933 | 0.84549 | 3.93E-59 | -1.69E-46 |
| MS.gene052872 | MS.gene39933 | 0.851312 | 9.64E-61 | -1.69E-46 |
| MS.gene052916 | MS.gene39933 | 0.839923 | 1.19E-57 | -1.69E-46 |
| MS.gene052966 | MS.gene39933 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene39933 | 0.826034 | 3.39E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene39933 | 0.803573 | 3.27E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene39933 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene39933 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene053384 | MS.gene39933 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene39933 | -0.802346 | 5.86E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene39933 | 0.822925 | 1.83E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene39933 | 0.810072 | 1.38E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene39933 | -0.81051 | 1.11E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene39933 | 0.824042 | 1.00E-53 | -1.69E-46 |
| MS.gene053632 | MS.gene39933 | 0.80227 | 6.07E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene39933 | 0.848713 | 5.14E-60 | -1.69E-46 |
| MS.gene053916 | MS.gene39933 | 0.858701 | 6.87E-63 | -1.69E-46 |
| MS.gene054600 | MS.gene39933 | 0.819001 | 1.46E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene39933 | 0.839811 | 1.27E-57 | -1.69E-46 |
| MS.gene05494 | MS.gene39933 | 0.827776 | 1.30E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene39933 | 0.830218 | 3.32E-55 | -1.69E-46 |
| MS.gene05505 | MS.gene39933 | 0.813388 | 2.62E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene39933 | 0.816074 | 6.67E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene39933 | 0.835276 | 1.84E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene39933 | 0.833431 | 5.36E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene39933 | 0.823431 | 1.39E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene39933 | 0.84535 | 4.29E-59 | -1.69E-46 |
| MS.gene055634 | MS.gene39933 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene39933 | 0.813753 | 2.18E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene39933 | 0.826857 | 2.15E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene39933 | 0.878311 | 3.11E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene39933 | 0.807428 | 5.08E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene39933 | 0.814526 | 1.47E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene39933 | 0.803754 | 3.00E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene39933 | 0.841918 | 3.55E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene39933 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene39933 | 0.817415 | 3.34E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene39933 | 0.83098 | 2.16E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene39933 | 0.831344 | 1.76E-55 | -1.69E-46 |
| MS.gene056549 | MS.gene39933 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene39933 | 0.836023 | 1.19E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene39933 | 0.844402 | 7.73E-59 | -1.69E-46 |
| MS.gene057129 | MS.gene39933 | 0.802005 | 6.89E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene39933 | 0.8427 | 2.20E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene39933 | 0.813236 | 2.83E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene39933 | 0.804176 | 2.45E-49 | -1.69E-46 |
| MS.gene057857 | MS.gene39933 | 0.827936 | 1.19E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene39933 | 0.849368 | 3.38E-60 | -1.69E-46 |
| MS.gene05837 | MS.gene39933 | 0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene39933 | 0.850923 | 1.24E-60 | -1.69E-46 |
| MS.gene058723 | MS.gene39933 | 0.847785 | 9.29E-60 | -1.69E-46 |
| MS.gene058773 | MS.gene39933 | 0.859398 | 4.25E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene39933 | 0.837497 | 5.02E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene39933 | 0.828484 | 8.77E-55 | -1.69E-46 |
| MS.gene059029 | MS.gene39933 | 0.828156 | 1.05E-54 | -1.69E-46 |
| MS.gene05913 | MS.gene39933 | 0.834363 | 3.13E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene39933 | 0.836601 | 8.51E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene39933 | 0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene39933 | 0.844535 | 7.12E-59 | -1.69E-46 |
| MS.gene059902 | MS.gene39933 | 0.857816 | 1.26E-62 | -1.69E-46 |
| MS.gene060703 | MS.gene39933 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene39933 | 0.828055 | 1.11E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene39933 | 0.818754 | 1.66E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene39933 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene39933 | 0.822252 | 2.62E-53 | -1.69E-46 |
| MS.gene061134 | MS.gene39933 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene39933 | 0.808551 | 2.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39933.t1 | MTR_1g071110 | 97.406 | 347 | 9 | 0 | 1 | 347 | 1 | 347 | 0.0 | 704 |
| MS.gene39933.t1 | MTR_1g076570 | 76.504 | 349 | 71 | 4 | 1 | 347 | 1 | 340 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39933.t1 | AT3G63410 | 78.223 | 349 | 63 | 5 | 1 | 347 | 1 | 338 | 0.0 | 514 |
Find 83 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTCCACGATACCATTT+TGG | 0.111746 | 1.4:-58255909 | None:intergenic |
| AACCAAACCCATTTCCATTT+AGG | 0.188522 | 1.4:-58254577 | None:intergenic |
| TCGCCGTCATGGCTTGATTA+TGG | 0.203458 | 1.4:+58255929 | MS.gene39933:CDS |
| GTTTACGAAGGCAGGGTTTA+AGG | 0.206012 | 1.4:+58255863 | MS.gene39933:CDS |
| TTGAATTGCAAAACCCTAAA+TGG | 0.213948 | 1.4:+58254563 | MS.gene39933:CDS |
| CAAGTATCAATGCTAAAATT+AGG | 0.216380 | 1.4:+58254645 | MS.gene39933:CDS |
| CTCTCAGATTGGCTGATCTT+TGG | 0.227283 | 1.4:-58257441 | None:intergenic |
| TACAATGTTTCTCTTCAAAT+TGG | 0.240007 | 1.4:-58254672 | None:intergenic |
| GTCCTGTCTACCCGACATTT+TGG | 0.244718 | 1.4:+58255778 | MS.gene39933:CDS |
| TTCTTACTGCGCTTTGCTTT+GGG | 0.246166 | 1.4:+58257353 | MS.gene39933:CDS |
| CGCCGTCATGGCTTGATTAT+GGG | 0.259408 | 1.4:+58255930 | MS.gene39933:CDS |
| ACCAAACCCATTTCCATTTA+GGG | 0.264467 | 1.4:-58254576 | None:intergenic |
| ATCTGGGGATTCTCCTTTGC+AGG | 0.267355 | 1.4:+58255980 | MS.gene39933:CDS |
| CGCGTTTCTTCGCAGATGTT+TGG | 0.268470 | 1.4:+58255805 | MS.gene39933:CDS |
| TTAAGGATGTCCAGCTAAAA+AGG | 0.270534 | 1.4:+58255880 | MS.gene39933:CDS |
| TCTCAGATTGGCTGATCTTT+GGG | 0.280706 | 1.4:-58257440 | None:intergenic |
| CTTCTTACTGCGCTTTGCTT+TGG | 0.285116 | 1.4:+58257352 | MS.gene39933:CDS |
| AAGAAGACAAGAGGATTTAC+AGG | 0.309464 | 1.4:-58257335 | None:intergenic |
| TCTTTGAGCCACATGTAAAT+AGG | 0.317118 | 1.4:-58257407 | None:intergenic |
| TGGGCGTCCTAGCAGCTTCA+TGG | 0.320293 | 1.4:+58257372 | MS.gene39933:CDS |
| TGCAAAACCCTAAATGGAAA+TGG | 0.347678 | 1.4:+58254569 | MS.gene39933:CDS |
| AAGTATCAATGCTAAAATTA+GGG | 0.352482 | 1.4:+58254646 | MS.gene39933:CDS |
| ACCCTAAATGGAAATGGGTT+TGG | 0.352490 | 1.4:+58254575 | MS.gene39933:CDS |
| TCGATATACTCTTCTTCCTT+AGG | 0.352524 | 1.4:-58255837 | None:intergenic |
| CTTGATGTTGGTGGTGGTAC+TGG | 0.356271 | 1.4:+58254893 | MS.gene39933:CDS |
| ACTGGTGTTAAGCCTGCATC+TGG | 0.356332 | 1.4:+58255963 | MS.gene39933:CDS |
| TGTTTCTCAGTATTGAATAC+TGG | 0.367884 | 1.4:+58255685 | MS.gene39933:intron |
| GGTACTGGTTTCACTACATT+GGG | 0.400200 | 1.4:+58254908 | MS.gene39933:CDS |
| TAAGCAAAAGGAACCACTTA+AGG | 0.409007 | 1.4:+58255000 | MS.gene39933:CDS |
| AAGGATTGTAAAATTGTTGA+AGG | 0.409383 | 1.4:+58255019 | MS.gene39933:CDS |
| CGATATACTCTTCTTCCTTA+GGG | 0.422230 | 1.4:-58255836 | None:intergenic |
| ATAAACCTAGGTTGTGAACT+TGG | 0.425109 | 1.4:-58254728 | None:intergenic |
| ATCGAGTGGTTTACGAAGGC+AGG | 0.431658 | 1.4:+58255855 | MS.gene39933:CDS |
| ATTATGGGTTGTTCTGTGAC+TGG | 0.435412 | 1.4:+58255945 | MS.gene39933:CDS |
| TTGATGCCACGCTGTGGATC+CGG | 0.441360 | 1.4:-58255708 | None:intergenic |
| GCAAAACCCTAAATGGAAAT+GGG | 0.450371 | 1.4:+58254570 | MS.gene39933:CDS |
| AATATGCTTGTTCTTGATGT+TGG | 0.451756 | 1.4:+58254881 | MS.gene39933:CDS |
| ATGTTATAAACCCTGGTCAT+TGG | 0.460038 | 1.4:+58254807 | MS.gene39933:CDS |
| GGAAATGGGTTTGGTTTCAC+AGG | 0.462226 | 1.4:+58254584 | MS.gene39933:CDS |
| ATGCTTGTTCTTGATGTTGG+TGG | 0.473214 | 1.4:+58254884 | MS.gene39933:CDS |
| AACCAAAATGTCGGGTAGAC+AGG | 0.473847 | 1.4:-58255780 | None:intergenic |
| TTCCTATCAGTAAGTTCAGC+TGG | 0.478104 | 1.4:-58254860 | None:intergenic |
| TGGTACTGGTTTCACTACAT+TGG | 0.488035 | 1.4:+58254907 | MS.gene39933:CDS |
| AGGATTGTAAAATTGTTGAA+GGG | 0.496213 | 1.4:+58255020 | MS.gene39933:CDS |
| GTGGCATCAAGGAAGCATAC+AGG | 0.498940 | 1.4:+58255721 | MS.gene39933:CDS |
| CTTGTTCTTGATGTTGGTGG+TGG | 0.500158 | 1.4:+58254887 | MS.gene39933:CDS |
| TTCACAGGTTCAGATTTCAA+TGG | 0.502460 | 1.4:+58254599 | MS.gene39933:CDS |
| CCTACAAATCTCTCTCAGAT+TGG | 0.504843 | 1.4:-58257452 | None:intergenic |
| GCTTGCTAAAGCTAAGCAAA+AGG | 0.506693 | 1.4:+58254988 | MS.gene39933:CDS |
| AACCAGCTGAACTTACTGAT+AGG | 0.522090 | 1.4:+58254858 | MS.gene39933:CDS |
| TTTGCTGCAGCTTGGTCCAA+AGG | 0.523778 | 1.4:+58257295 | MS.gene39933:intron |
| CTGGTGTTAAGCCTGCATCT+GGG | 0.528996 | 1.4:+58255964 | MS.gene39933:CDS |
| AACGCGACAACCAAAATGTC+GGG | 0.531908 | 1.4:-58255788 | None:intergenic |
| TATTGATTCCTATTTACATG+TGG | 0.537530 | 1.4:+58257399 | MS.gene39933:CDS |
| AAAGGAGAATCCCCAGATGC+AGG | 0.539061 | 1.4:-58255975 | None:intergenic |
| GGATCCACAGCGTGGCATCA+AGG | 0.541356 | 1.4:+58255710 | MS.gene39933:CDS |
| TCAGCATAATCAGTTCGAAA+AGG | 0.544718 | 1.4:-58255058 | None:intergenic |
| CAAGACCAAGTTCACAACCT+AGG | 0.556920 | 1.4:+58254723 | MS.gene39933:CDS |
| TATCGTGGAGTTCGCCGTCA+TGG | 0.558525 | 1.4:+58255918 | MS.gene39933:CDS |
| GGATTGTAAAATTGTTGAAG+GGG | 0.558559 | 1.4:+58255021 | MS.gene39933:CDS |
| TGGTGTTAAGCCTGCATCTG+GGG | 0.564309 | 1.4:+58255965 | MS.gene39933:CDS |
| AAGCGCAGTAAGAAGACAAG+AGG | 0.564594 | 1.4:-58257344 | None:intergenic |
| ATATCTTCAGTCCAATGACC+AGG | 0.572070 | 1.4:-58254818 | None:intergenic |
| TCTCAGTATTGAATACTGGC+CGG | 0.576769 | 1.4:+58255689 | MS.gene39933:intron |
| AAGATGACAAATACCTGCAA+AGG | 0.577073 | 1.4:-58255993 | None:intergenic |
| GCTGATAGATATGTGTCCGC+TGG | 0.579059 | 1.4:+58255076 | MS.gene39933:CDS |
| ATACAAACCATGAAGCTGCT+AGG | 0.582925 | 1.4:-58257379 | None:intergenic |
| TTAGCTTTAGCAAGCTGATG+AGG | 0.586187 | 1.4:-58254980 | None:intergenic |
| TCGAGTGGTTTACGAAGGCA+GGG | 0.588098 | 1.4:+58255856 | MS.gene39933:CDS |
| ATAGATATGTGTCCGCTGGA+AGG | 0.594629 | 1.4:+58255080 | MS.gene39933:CDS |
| TGGCATCAAGGAAGCATACA+GGG | 0.598551 | 1.4:+58255722 | MS.gene39933:CDS |
| AACCCATAATCAAGCCATGA+CGG | 0.615385 | 1.4:-58255932 | None:intergenic |
| AAACGCGACAACCAAAATGT+CGG | 0.616259 | 1.4:-58255789 | None:intergenic |
| GCTTCCTTGATGCCACGCTG+TGG | 0.644008 | 1.4:-58255714 | None:intergenic |
| TATCTTCAGTCCAATGACCA+GGG | 0.655879 | 1.4:-58254817 | None:intergenic |
| AATGACCAGGGTTTATAACA+TGG | 0.658874 | 1.4:-58254805 | None:intergenic |
| ATTGGCCCAAAATGGTATCG+TGG | 0.672762 | 1.4:+58255903 | MS.gene39933:CDS |
| GTATATCGAGTGGTTTACGA+AGG | 0.686187 | 1.4:+58255851 | MS.gene39933:CDS |
| ATGGCTTCACTAATGCTCAG+TGG | 0.694171 | 1.4:+58254521 | MS.gene39933:CDS |
| TATGACCATGTTATAAACCC+TGG | 0.696580 | 1.4:+58254800 | MS.gene39933:CDS |
| TACTGGCCGGATCCACAGCG+TGG | 0.700858 | 1.4:+58255702 | MS.gene39933:CDS |
| AGGAAGAAGAGTATATCGAG+TGG | 0.717684 | 1.4:+58255841 | MS.gene39933:CDS |
| GACATCGATATACCTTCCAG+CGG | 0.718494 | 1.4:-58255092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAAAAAACATACC+TGG | - | chr1.4:58256905-58256924 | None:intergenic | 15.0% |
| !! | AACCATGCATAATTATTTAA+AGG | - | chr1.4:58255149-58255168 | None:intergenic | 20.0% |
| !! | AAGTATCAATGCTAAAATTA+GGG | + | chr1.4:58254646-58254665 | MS.gene39933:CDS | 20.0% |
| !! | ATCATGTTTGATATTTAAGT+TGG | + | chr1.4:58256698-58256717 | MS.gene39933:intron | 20.0% |
| !! | ATTTGATTAAGCATAAAAGA+AGG | - | chr1.4:58256050-58256069 | None:intergenic | 20.0% |
| !! | CTATAACAAGAGAAAAATAA+AGG | - | chr1.4:58255370-58255389 | None:intergenic | 20.0% |
| !! | GAATAATAGATAGAAAAAAG+AGG | - | chr1.4:58256384-58256403 | None:intergenic | 20.0% |
| !! | TAATCAAATCATGTTGTATA+AGG | + | chr1.4:58256061-58256080 | MS.gene39933:intron | 20.0% |
| !! | TGATTTATTATTGTTAAGTG+TGG | + | chr1.4:58256799-58256818 | MS.gene39933:intron | 20.0% |
| !! | TTTGATTAAGCATAAAAGAA+GGG | - | chr1.4:58256049-58256068 | None:intergenic | 20.0% |
| !!! | ATTTTTACATGAAATGACTA+TGG | + | chr1.4:58256517-58256536 | MS.gene39933:intron | 20.0% |
| !!! | GAATATAGAGATTTTGATTT+AGG | - | chr1.4:58257111-58257130 | None:intergenic | 20.0% |
| ! | AAGGATTGTAAAATTGTTGA+AGG | + | chr1.4:58255019-58255038 | MS.gene39933:CDS | 25.0% |
| ! | AAGTGTACATAGATATAAAG+TGG | + | chr1.4:58255539-58255558 | MS.gene39933:intron | 25.0% |
| ! | AGGATTGTAAAATTGTTGAA+GGG | + | chr1.4:58255020-58255039 | MS.gene39933:CDS | 25.0% |
| ! | AGTTGTTATCAATGTAGATA+TGG | + | chr1.4:58256877-58256896 | MS.gene39933:intron | 25.0% |
| ! | ATCAGTAACCATATAGATAT+AGG | - | chr1.4:58256499-58256518 | None:intergenic | 25.0% |
| ! | CAAGTATCAATGCTAAAATT+AGG | + | chr1.4:58254645-58254664 | MS.gene39933:CDS | 25.0% |
| ! | CATAAACAGTATATGCTTTA+CGG | + | chr1.4:58256164-58256183 | MS.gene39933:intron | 25.0% |
| ! | GAAAAAAGAGGTAAACTTAA+AGG | - | chr1.4:58256372-58256391 | None:intergenic | 25.0% |
| ! | GGAAGTTTACACATTTAATA+TGG | - | chr1.4:58256669-58256688 | None:intergenic | 25.0% |
| ! | GTTGTTATCAATGTAGATAT+GGG | + | chr1.4:58256878-58256897 | MS.gene39933:intron | 25.0% |
| ! | TAAATGTCCCTATATCTATA+TGG | + | chr1.4:58256488-58256507 | MS.gene39933:intron | 25.0% |
| ! | TACAATGTTTCTCTTCAAAT+TGG | - | chr1.4:58254675-58254694 | None:intergenic | 25.0% |
| ! | TCAGTAACCATATAGATATA+GGG | - | chr1.4:58256498-58256517 | None:intergenic | 25.0% |
| ! | TGCCTTTAAATAATTATGCA+TGG | + | chr1.4:58255144-58255163 | MS.gene39933:intron | 25.0% |
| !! | ACAATTTTACAATCCTTAAG+TGG | - | chr1.4:58255016-58255035 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTGTATAAACCT+AGG | - | chr1.4:58254743-58254762 | None:intergenic | 25.0% |
| !!! | AACACAAAAAAGAAGCATTT+TGG | + | chr1.4:58254753-58254772 | MS.gene39933:CDS | 25.0% |
| !!! | AAGAAGCATTTTGGTTTTAT+AGG | + | chr1.4:58254762-58254781 | MS.gene39933:CDS | 25.0% |
| !!! | ATGTTTGATATTTAAGTTGG+AGG | + | chr1.4:58256701-58256720 | MS.gene39933:intron | 25.0% |
| !!! | TAGCATTGATACTTGTTTTT+GGG | - | chr1.4:58254640-58254659 | None:intergenic | 25.0% |
| !!! | TATTGATTCCTATTTACATG+TGG | + | chr1.4:58257399-58257418 | MS.gene39933:CDS | 25.0% |
| !!! | TTAGCATTGATACTTGTTTT+TGG | - | chr1.4:58254641-58254660 | None:intergenic | 25.0% |
| AAAGAGGTAAACTTAAAGGA+TGG | - | chr1.4:58256368-58256387 | None:intergenic | 30.0% | |
| AAGAGGTAAACTTAAAGGAT+GGG | - | chr1.4:58256367-58256386 | None:intergenic | 30.0% | |
| AATATGCTTGTTCTTGATGT+TGG | + | chr1.4:58254881-58254900 | MS.gene39933:CDS | 30.0% | |
| ATCAAACATGATCACTTCAA+TGG | - | chr1.4:58256690-58256709 | None:intergenic | 30.0% | |
| ATTCAGCTTAACAAAGCTAT+AGG | + | chr1.4:58257127-58257146 | MS.gene39933:intron | 30.0% | |
| CCAACAAAAAAACATGTACA+GGG | - | chr1.4:58256452-58256471 | None:intergenic | 30.0% | |
| CGTAAAGCATATACTGTTTA+TGG | - | chr1.4:58256166-58256185 | None:intergenic | 30.0% | |
| CTACTTACACTTGTAAGTAT+CGG | - | chr1.4:58256829-58256848 | None:intergenic | 30.0% | |
| GAGTTATGAACAAAACACTA+CGG | + | chr1.4:58257016-58257035 | MS.gene39933:intron | 30.0% | |
| GGATTGTAAAATTGTTGAAG+GGG | + | chr1.4:58255021-58255040 | MS.gene39933:CDS | 30.0% | |
| TAACAAAGCTATAGGATTTG+AGG | + | chr1.4:58257135-58257154 | MS.gene39933:intron | 30.0% | |
| TCAAATAAGCCAATCCAAAT+AGG | - | chr1.4:58255229-58255248 | None:intergenic | 30.0% | |
| TCCAACAAAAAAACATGTAC+AGG | - | chr1.4:58256453-58256472 | None:intergenic | 30.0% | |
| TTGAAATAGTCATCAGTTGA+GGG | - | chr1.4:58256217-58256236 | None:intergenic | 30.0% | |
| TTGAATTGCAAAACCCTAAA+TGG | + | chr1.4:58254563-58254582 | MS.gene39933:CDS | 30.0% | |
| ! | TGTTTCTCAGTATTGAATAC+TGG | + | chr1.4:58255685-58255704 | MS.gene39933:intron | 30.0% |
| ! | TGTTTTCGTATAAGCTATCT+TGG | - | chr1.4:58255342-58255361 | None:intergenic | 30.0% |
| ! | TTTGAAATAGTCATCAGTTG+AGG | - | chr1.4:58256218-58256237 | None:intergenic | 30.0% |
| ! | TTTTCAACATCTTCTTCCTT+TGG | - | chr1.4:58257314-58257333 | None:intergenic | 30.0% |
| !! | AAAGTAGATTGCTTTGAAAG+AGG | + | chr1.4:58255643-58255662 | MS.gene39933:intron | 30.0% |
| !! | TATAAGGTTGTTTCTCCTTA+TGG | + | chr1.4:58256077-58256096 | MS.gene39933:intron | 30.0% |
| !! | TTTATTTTCAATTGCGAGCA+TGG | + | chr1.4:58256920-58256939 | MS.gene39933:intron | 30.0% |
| !!! | AGCATTGATACTTGTTTTTG+GGG | - | chr1.4:58254639-58254658 | None:intergenic | 30.0% |
| !!! | ATACAGGGTTTTGAAATTTG+GGG | + | chr1.4:58255737-58255756 | MS.gene39933:CDS | 30.0% |
| !!! | CATACAGGGTTTTGAAATTT+GGG | + | chr1.4:58255736-58255755 | MS.gene39933:CDS | 30.0% |
| !!! | TGTAAATCCCCTTTTTTATC+CGG | + | chr1.4:58256314-58256333 | MS.gene39933:intron | 30.0% |
| AAAAAAACTAAGCCACTGCT+TGG | - | chr1.4:58255462-58255481 | None:intergenic | 35.0% | |
| AAACAGTATATGCTTTACGG+TGG | + | chr1.4:58256167-58256186 | MS.gene39933:intron | 35.0% | |
| AACAGTATATGCTTTACGGT+GGG | + | chr1.4:58256168-58256187 | MS.gene39933:intron | 35.0% | |
| AACCAAACCCATTTCCATTT+AGG | - | chr1.4:58254580-58254599 | None:intergenic | 35.0% | |
| AAGAAGACAAGAGGATTTAC+AGG | - | chr1.4:58257338-58257357 | None:intergenic | 35.0% | |
| AAGATGACAAATACCTGCAA+AGG | - | chr1.4:58255996-58256015 | None:intergenic | 35.0% | |
| AATGACCAGGGTTTATAACA+TGG | - | chr1.4:58254808-58254827 | None:intergenic | 35.0% | |
| ACATAAGGATGACAATTGGT+AGG | - | chr1.4:58256975-58256994 | None:intergenic | 35.0% | |
| ACCAAACCCATTTCCATTTA+GGG | - | chr1.4:58254579-58254598 | None:intergenic | 35.0% | |
| ACTTACACTTCCAAGACATA+AGG | - | chr1.4:58256990-58257009 | None:intergenic | 35.0% | |
| ACTTCAATACCCATACTTGA+TGG | - | chr1.4:58256860-58256879 | None:intergenic | 35.0% | |
| AGTTTAGTACCCATCAAGTA+TGG | + | chr1.4:58256847-58256866 | MS.gene39933:intron | 35.0% | |
| ATAAACCTAGGTTGTGAACT+TGG | - | chr1.4:58254731-58254750 | None:intergenic | 35.0% | |
| ATGGTCAGTAAGTCATAACA+TGG | - | chr1.4:58256147-58256166 | None:intergenic | 35.0% | |
| ATGTTATAAACCCTGGTCAT+TGG | + | chr1.4:58254807-58254826 | MS.gene39933:CDS | 35.0% | |
| CAAGACATAAGGATGACAAT+TGG | - | chr1.4:58256979-58256998 | None:intergenic | 35.0% | |
| CAATTGTCATCCTTATGTCT+TGG | + | chr1.4:58256977-58256996 | MS.gene39933:intron | 35.0% | |
| CATAAGGATGACAATTGGTA+GGG | - | chr1.4:58256974-58256993 | None:intergenic | 35.0% | |
| CCTTCAATGTTAACAGACAT+GGG | + | chr1.4:58257049-58257068 | MS.gene39933:intron | 35.0% | |
| CGATATACTCTTCTTCCTTA+GGG | - | chr1.4:58255839-58255858 | None:intergenic | 35.0% | |
| CTTCAATACCCATACTTGAT+GGG | - | chr1.4:58256859-58256878 | None:intergenic | 35.0% | |
| GCAAAACCCTAAATGGAAAT+GGG | + | chr1.4:58254570-58254589 | MS.gene39933:CDS | 35.0% | |
| GCTTATTTGAGCTCATTTAC+TGG | + | chr1.4:58255239-58255258 | MS.gene39933:intron | 35.0% | |
| GTAAACTTAAAGGATGGGAT+AGG | - | chr1.4:58256362-58256381 | None:intergenic | 35.0% | |
| GTAGGCACATCTAATCTAAA+AGG | - | chr1.4:58256261-58256280 | None:intergenic | 35.0% | |
| GTTCCTAAAATGTTGCAAGT+AGG | - | chr1.4:58256279-58256298 | None:intergenic | 35.0% | |
| GTTTAGTACCCATCAAGTAT+GGG | + | chr1.4:58256848-58256867 | MS.gene39933:intron | 35.0% | |
| TAAGCAAAAGGAACCACTTA+AGG | + | chr1.4:58255000-58255019 | MS.gene39933:CDS | 35.0% | |
| TATGACCATGTTATAAACCC+TGG | + | chr1.4:58254800-58254819 | MS.gene39933:CDS | 35.0% | |
| TCAGCATAATCAGTTCGAAA+AGG | - | chr1.4:58255061-58255080 | None:intergenic | 35.0% | |
| TCAGTAAGTCATAACATGGT+AGG | - | chr1.4:58256143-58256162 | None:intergenic | 35.0% | |
| TCGATATACTCTTCTTCCTT+AGG | - | chr1.4:58255840-58255859 | None:intergenic | 35.0% | |
| TCTTTGAGCCACATGTAAAT+AGG | - | chr1.4:58257410-58257429 | None:intergenic | 35.0% | |
| TGCAAAACCCTAAATGGAAA+TGG | + | chr1.4:58254569-58254588 | MS.gene39933:CDS | 35.0% | |
| TGCAAATACACCTCTTTCAA+AGG | - | chr1.4:58255568-58255587 | None:intergenic | 35.0% | |
| TTAAGGATGTCCAGCTAAAA+AGG | + | chr1.4:58255880-58255899 | MS.gene39933:CDS | 35.0% | |
| TTCACAGGTTCAGATTTCAA+TGG | + | chr1.4:58254599-58254618 | MS.gene39933:CDS | 35.0% | |
| ! | GTTCTTCTTGATGACTGTTA+GGG | + | chr1.4:58255203-58255222 | MS.gene39933:intron | 35.0% |
| ! | TAAAGGCATATGAAACAGCA+TGG | - | chr1.4:58255132-58255151 | None:intergenic | 35.0% |
| ! | TGTTCTTCTTGATGACTGTT+AGG | + | chr1.4:58255202-58255221 | MS.gene39933:intron | 35.0% |
| !! | TAAAAAGGATTGGCCCAAAA+TGG | + | chr1.4:58255895-58255914 | MS.gene39933:CDS | 35.0% |
| !!! | CCCTGTACATGTTTTTTTGT+TGG | + | chr1.4:58256449-58256468 | MS.gene39933:intron | 35.0% |
| !!! | GCATACAGGGTTTTGAAATT+TGG | + | chr1.4:58255735-58255754 | MS.gene39933:CDS | 35.0% |
| !!! | TACAGGGTTTTGAAATTTGG+GGG | + | chr1.4:58255738-58255757 | MS.gene39933:CDS | 35.0% |
| AAACGCGACAACCAAAATGT+CGG | - | chr1.4:58255792-58255811 | None:intergenic | 40.0% | |
| AACCAGCTGAACTTACTGAT+AGG | + | chr1.4:58254858-58254877 | MS.gene39933:CDS | 40.0% | |
| AACCCATAATCAAGCCATGA+CGG | - | chr1.4:58255935-58255954 | None:intergenic | 40.0% | |
| AGGTACTCCGGATAAAAAAG+GGG | - | chr1.4:58256324-58256343 | None:intergenic | 40.0% | |
| ATACAAACCATGAAGCTGCT+AGG | - | chr1.4:58257382-58257401 | None:intergenic | 40.0% | |
| ATAGGTTCTCAAATGTGCTC+AGG | - | chr1.4:58256344-58256363 | None:intergenic | 40.0% | |
| ATATCTTCAGTCCAATGACC+AGG | - | chr1.4:58254821-58254840 | None:intergenic | 40.0% | |
| ATCAATGTAGATATGGGTCC+AGG | + | chr1.4:58256884-58256903 | MS.gene39933:intron | 40.0% | |
| ATGCTTGTTCTTGATGTTGG+TGG | + | chr1.4:58254884-58254903 | MS.gene39933:CDS | 40.0% | |
| CACACACAGACACTACAAAA+AGG | - | chr1.4:58256591-58256610 | None:intergenic | 40.0% | |
| CACTTATTACCTCCTTGCAT+TGG | + | chr1.4:58257192-58257211 | MS.gene39933:intron | 40.0% | |
| CAGGTACTCCGGATAAAAAA+GGG | - | chr1.4:58256325-58256344 | None:intergenic | 40.0% | |
| CCCATGTCTGTTAACATTGA+AGG | - | chr1.4:58257052-58257071 | None:intergenic | 40.0% | |
| GATGTCCAGCTAAAAAGGAT+TGG | + | chr1.4:58255885-58255904 | MS.gene39933:CDS | 40.0% | |
| GCCTTCAATGTTAACAGACA+TGG | + | chr1.4:58257048-58257067 | MS.gene39933:intron | 40.0% | |
| GTATATCGAGTGGTTTACGA+AGG | + | chr1.4:58255851-58255870 | MS.gene39933:CDS | 40.0% | |
| GTCATAACATGGTAGGTATC+AGG | - | chr1.4:58256136-58256155 | None:intergenic | 40.0% | |
| TATCTTCAGTCCAATGACCA+GGG | - | chr1.4:58254820-58254839 | None:intergenic | 40.0% | |
| TCAGGTACTCCGGATAAAAA+AGG | - | chr1.4:58256326-58256345 | None:intergenic | 40.0% | |
| TGAAAAAACAGACACACACC+AGG | - | chr1.4:58256106-58256125 | None:intergenic | 40.0% | |
| TTCCTATCAGTAAGTTCAGC+TGG | - | chr1.4:58254863-58254882 | None:intergenic | 40.0% | |
| TTCTTACTGCGCTTTGCTTT+GGG | + | chr1.4:58257353-58257372 | MS.gene39933:CDS | 40.0% | |
| TTGGAGGAAAACTAGTTCCT+GGG | + | chr1.4:58256717-58256736 | MS.gene39933:intron | 40.0% | |
| ! | AAAGTGGCTTCCTTTGAAAG+AGG | + | chr1.4:58255555-58255574 | MS.gene39933:intron | 40.0% |
| ! | ACCCTAAATGGAAATGGGTT+TGG | + | chr1.4:58254575-58254594 | MS.gene39933:CDS | 40.0% |
| ! | AGGAAGAAGAGTATATCGAG+TGG | + | chr1.4:58255841-58255860 | MS.gene39933:CDS | 40.0% |
| ! | ATTATGGGTTGTTCTGTGAC+TGG | + | chr1.4:58255945-58255964 | MS.gene39933:CDS | 40.0% |
| ! | GAACTCCACGATACCATTTT+GGG | - | chr1.4:58255911-58255930 | None:intergenic | 40.0% |
| ! | GCTTGCTAAAGCTAAGCAAA+AGG | + | chr1.4:58254988-58255007 | MS.gene39933:CDS | 40.0% |
| ! | GTGCCTACTTGCAACATTTT+AGG | + | chr1.4:58256273-58256292 | MS.gene39933:intron | 40.0% |
| ! | TCTCAGTATTGAATACTGGC+CGG | + | chr1.4:58255689-58255708 | MS.gene39933:intron | 40.0% |
| ! | TCTTGGAAGTGTAAGTAGCA+TGG | + | chr1.4:58256994-58257013 | MS.gene39933:intron | 40.0% |
| ! | TGTTTGGATGCTTTTCCCTA+AGG | + | chr1.4:58255821-58255840 | MS.gene39933:CDS | 40.0% |
| !! | GGTACTGGTTTCACTACATT+GGG | + | chr1.4:58254908-58254927 | MS.gene39933:CDS | 40.0% |
| !! | TGGTACTGGTTTCACTACAT+TGG | + | chr1.4:58254907-58254926 | MS.gene39933:CDS | 40.0% |
| !! | TTAGCTTTAGCAAGCTGATG+AGG | - | chr1.4:58254983-58255002 | None:intergenic | 40.0% |
| !!! | GGTGTGTGTCTGTTTTTTCA+AGG | + | chr1.4:58256106-58256125 | MS.gene39933:intron | 40.0% |
| AACCAAAATGTCGGGTAGAC+AGG | - | chr1.4:58255783-58255802 | None:intergenic | 45.0% | |
| AACGCGACAACCAAAATGTC+GGG | - | chr1.4:58255791-58255810 | None:intergenic | 45.0% | |
| AAGCGCAGTAAGAAGACAAG+AGG | - | chr1.4:58257347-58257366 | None:intergenic | 45.0% | |
| ATAGATATGTGTCCGCTGGA+AGG | + | chr1.4:58255080-58255099 | MS.gene39933:CDS | 45.0% | |
| ATGGCTTCACTAATGCTCAG+TGG | + | chr1.4:58254521-58254540 | MS.gene39933:CDS | 45.0% | |
| ATTGGCCCAAAATGGTATCG+TGG | + | chr1.4:58255903-58255922 | MS.gene39933:CDS | 45.0% | |
| CAAGACCAAGTTCACAACCT+AGG | + | chr1.4:58254723-58254742 | MS.gene39933:CDS | 45.0% | |
| CAGCTACAAGATCGCAACAA+AGG | - | chr1.4:58255510-58255529 | None:intergenic | 45.0% | |
| CCTGGGCATGGTAAAGAAAA+TGG | + | chr1.4:58256734-58256753 | MS.gene39933:intron | 45.0% | |
| CTGTTAGGGCCTATTTGGAT+TGG | + | chr1.4:58255217-58255236 | MS.gene39933:intron | 45.0% | |
| CTTCTTACTGCGCTTTGCTT+TGG | + | chr1.4:58257352-58257371 | MS.gene39933:CDS | 45.0% | |
| GACATCGATATACCTTCCAG+CGG | - | chr1.4:58255095-58255114 | None:intergenic | 45.0% | |
| GACATGGGTATAGTAGTCAC+TGG | + | chr1.4:58257064-58257083 | MS.gene39933:intron | 45.0% | |
| GATGACTGTTAGGGCCTATT+TGG | + | chr1.4:58255212-58255231 | MS.gene39933:intron | 45.0% | |
| GGGGGCAAAGCATGTTTAAT+TGG | + | chr1.4:58255756-58255775 | MS.gene39933:CDS | 45.0% | |
| GTTGGAGGAAAACTAGTTCC+TGG | + | chr1.4:58256716-58256735 | MS.gene39933:intron | 45.0% | |
| GTTTACGAAGGCAGGGTTTA+AGG | + | chr1.4:58255863-58255882 | MS.gene39933:CDS | 45.0% | |
| TAAGCTGTTTAGCCAAGCAG+TGG | + | chr1.4:58255447-58255466 | MS.gene39933:intron | 45.0% | |
| TCAAATGTGCTCAGGTACTC+CGG | - | chr1.4:58256336-58256355 | None:intergenic | 45.0% | |
| TGTTTCTCCTTATGGTGTCC+TGG | + | chr1.4:58256085-58256104 | MS.gene39933:intron | 45.0% | |
| ! | ACTGCAGTTTTGCCAATGCA+AGG | - | chr1.4:58257207-58257226 | None:intergenic | 45.0% |
| ! | CCATTTTCTTTACCATGCCC+AGG | - | chr1.4:58256737-58256756 | None:intergenic | 45.0% |
| ! | CGAACTCCACGATACCATTT+TGG | - | chr1.4:58255912-58255931 | None:intergenic | 45.0% |
| ! | CTTGTTCTTGATGTTGGTGG+TGG | + | chr1.4:58254887-58254906 | MS.gene39933:CDS | 45.0% |
| ! | GGAAATGGGTTTGGTTTCAC+AGG | + | chr1.4:58254584-58254603 | MS.gene39933:CDS | 45.0% |
| ! | TGGCATCAAGGAAGCATACA+GGG | + | chr1.4:58255722-58255741 | MS.gene39933:CDS | 45.0% |
| !! | TTCTGCAATTTGCTGCAGCT+TGG | + | chr1.4:58257287-58257306 | MS.gene39933:intron | 45.0% |
| !! | TTGGGCCAATCCTTTTTAGC+TGG | - | chr1.4:58255893-58255912 | None:intergenic | 45.0% |
| !!! | TTTTTTTGTTTTTTTTTTTT+TGG | + | chr1.4:58255475-58255494 | MS.gene39933:intron | 5.0% |
| AAAGGAGAATCCCCAGATGC+AGG | - | chr1.4:58255978-58255997 | None:intergenic | 50.0% | |
| ACACACACCAGGACACCATA+AGG | - | chr1.4:58256095-58256114 | None:intergenic | 50.0% | |
| ATCGAGTGGTTTACGAAGGC+AGG | + | chr1.4:58255855-58255874 | MS.gene39933:CDS | 50.0% | |
| ATCTGGGGATTCTCCTTTGC+AGG | + | chr1.4:58255980-58255999 | MS.gene39933:CDS | 50.0% | |
| CGCCGTCATGGCTTGATTAT+GGG | + | chr1.4:58255930-58255949 | MS.gene39933:CDS | 50.0% | |
| CGCGTTTCTTCGCAGATGTT+TGG | + | chr1.4:58255805-58255824 | MS.gene39933:CDS | 50.0% | |
| GCTGATAGATATGTGTCCGC+TGG | + | chr1.4:58255076-58255095 | MS.gene39933:CDS | 50.0% | |
| GGAAAACTAGTTCCTGGGCA+TGG | + | chr1.4:58256722-58256741 | MS.gene39933:intron | 50.0% | |
| GGGTATAGTAGTCACTGGTC+AGG | + | chr1.4:58257069-58257088 | MS.gene39933:intron | 50.0% | |
| TCGAGTGGTTTACGAAGGCA+GGG | + | chr1.4:58255856-58255875 | MS.gene39933:CDS | 50.0% | |
| TCGCCGTCATGGCTTGATTA+TGG | + | chr1.4:58255929-58255948 | MS.gene39933:CDS | 50.0% | |
| TTTGCTGCAGCTTGGTCCAA+AGG | + | chr1.4:58257295-58257314 | MS.gene39933:intron | 50.0% | |
| ! | ACTGGTGTTAAGCCTGCATC+TGG | + | chr1.4:58255963-58255982 | MS.gene39933:CDS | 50.0% |
| ! | CTGGTGTTAAGCCTGCATCT+GGG | + | chr1.4:58255964-58255983 | MS.gene39933:CDS | 50.0% |
| ! | GCAGTTTTGCCAATGCAAGG+AGG | - | chr1.4:58257204-58257223 | None:intergenic | 50.0% |
| ! | GTCCTGTCTACCCGACATTT+TGG | + | chr1.4:58255778-58255797 | MS.gene39933:CDS | 50.0% |
| ! | GTGGCATCAAGGAAGCATAC+AGG | + | chr1.4:58255721-58255740 | MS.gene39933:CDS | 50.0% |
| ! | TGGTGTTAAGCCTGCATCTG+GGG | + | chr1.4:58255965-58255984 | MS.gene39933:CDS | 50.0% |
| !! | CTTGATGTTGGTGGTGGTAC+TGG | + | chr1.4:58254893-58254912 | MS.gene39933:CDS | 50.0% |
| TATCGTGGAGTTCGCCGTCA+TGG | + | chr1.4:58255918-58255937 | MS.gene39933:CDS | 55.0% | |
| TTGATGCCACGCTGTGGATC+CGG | - | chr1.4:58255711-58255730 | None:intergenic | 55.0% | |
| GCTTCCTTGATGCCACGCTG+TGG | - | chr1.4:58255717-58255736 | None:intergenic | 60.0% | |
| GGATCCACAGCGTGGCATCA+AGG | + | chr1.4:58255710-58255729 | MS.gene39933:CDS | 60.0% | |
| TGGGCGTCCTAGCAGCTTCA+TGG | + | chr1.4:58257372-58257391 | MS.gene39933:CDS | 60.0% | |
| TACTGGCCGGATCCACAGCG+TGG | + | chr1.4:58255702-58255721 | MS.gene39933:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58254521 | 58257460 | 58254521 | ID=MS.gene39933 |
| chr1.4 | mRNA | 58254521 | 58257460 | 58254521 | ID=MS.gene39933.t1;Parent=MS.gene39933 |
| chr1.4 | exon | 58254521 | 58255101 | 58254521 | ID=MS.gene39933.t1.exon1;Parent=MS.gene39933.t1 |
| chr1.4 | CDS | 58254521 | 58255101 | 58254521 | ID=cds.MS.gene39933.t1;Parent=MS.gene39933.t1 |
| chr1.4 | exon | 58255695 | 58256001 | 58255695 | ID=MS.gene39933.t1.exon2;Parent=MS.gene39933.t1 |
| chr1.4 | CDS | 58255695 | 58256001 | 58255695 | ID=cds.MS.gene39933.t1;Parent=MS.gene39933.t1 |
| chr1.4 | exon | 58257305 | 58257460 | 58257305 | ID=MS.gene39933.t1.exon3;Parent=MS.gene39933.t1 |
| chr1.4 | CDS | 58257305 | 58257460 | 58257305 | ID=cds.MS.gene39933.t1;Parent=MS.gene39933.t1 |
| Gene Sequence |
| Protein sequence |
