Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53150.t1 | XP_003614000.1 | 98.3 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 2.50E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53150.t1 | B7FMG8 | 98.3 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 1.8e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene53150 | 0.843881 | 1.07E-58 | -1.69E-46 |
| MS.gene049284 | MS.gene53150 | 0.813116 | 3.01E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene53150 | 0.847436 | 1.16E-59 | -1.69E-46 |
| MS.gene049488 | MS.gene53150 | 0.805208 | 1.49E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene53150 | 0.827424 | 1.58E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene53150 | 0.855229 | 7.26E-62 | -1.69E-46 |
| MS.gene050076 | MS.gene53150 | 0.848177 | 7.24E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene53150 | 0.811893 | 5.57E-51 | -1.69E-46 |
| MS.gene050404 | MS.gene53150 | 0.804913 | 1.72E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene53150 | 0.820003 | 8.63E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene53150 | 0.817635 | 2.98E-52 | -1.69E-46 |
| MS.gene050464 | MS.gene53150 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene53150 | 0.85717 | 1.96E-62 | -1.69E-46 |
| MS.gene050593 | MS.gene53150 | 0.835976 | 1.23E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene53150 | 0.841929 | 3.53E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene53150 | 0.818313 | 2.09E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene53150 | 0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene050783 | MS.gene53150 | 0.805734 | 1.16E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene53150 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene53150 | 0.810554 | 1.09E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene53150 | 0.822694 | 2.07E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene53150 | 0.851794 | 7.04E-61 | -1.69E-46 |
| MS.gene051387 | MS.gene53150 | 0.843101 | 1.72E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene53150 | 0.831228 | 1.88E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene53150 | 0.843281 | 1.54E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene53150 | 0.832681 | 8.23E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene53150 | 0.850071 | 2.15E-60 | -1.69E-46 |
| MS.gene052340 | MS.gene53150 | 0.826819 | 2.20E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene53150 | 0.817926 | 2.56E-52 | -1.69E-46 |
| MS.gene052421 | MS.gene53150 | 0.85838 | 8.57E-63 | -1.69E-46 |
| MS.gene052481 | MS.gene53150 | 0.848184 | 7.20E-60 | -1.69E-46 |
| MS.gene052484 | MS.gene53150 | 0.819434 | 1.16E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene53150 | 0.814066 | 1.86E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene53150 | 0.855051 | 8.17E-62 | -1.69E-46 |
| MS.gene052503 | MS.gene53150 | 0.807706 | 4.43E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene53150 | 0.865681 | 4.95E-65 | -1.69E-46 |
| MS.gene052615 | MS.gene53150 | 0.83027 | 3.23E-55 | -1.69E-46 |
| MS.gene052823 | MS.gene53150 | 0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene53150 | 0.825095 | 5.65E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene53150 | 0.863012 | 3.37E-64 | -1.69E-46 |
| MS.gene053104 | MS.gene53150 | 0.852952 | 3.29E-61 | -1.69E-46 |
| MS.gene053107 | MS.gene53150 | 0.809661 | 1.69E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene53150 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene53150 | 0.807078 | 6.02E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene53150 | 0.825654 | 4.17E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene53150 | 0.811249 | 7.70E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene53150 | 0.85163 | 7.83E-61 | -1.69E-46 |
| MS.gene053579 | MS.gene53150 | 0.845105 | 5.00E-59 | -1.69E-46 |
| MS.gene053915 | MS.gene53150 | 0.800441 | 1.44E-48 | -1.69E-46 |
| MS.gene053971 | MS.gene53150 | 0.822306 | 2.54E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene53150 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene53150 | -0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene53150 | 0.804018 | 2.64E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene53150 | 0.800521 | 1.39E-48 | -1.69E-46 |
| MS.gene054804 | MS.gene53150 | 0.803348 | 3.64E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene53150 | 0.800504 | 1.40E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene53150 | 0.831056 | 2.07E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene53150 | 0.841946 | 3.49E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene53150 | 0.808045 | 3.76E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene53150 | 0.816288 | 5.98E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene53150 | 0.819317 | 1.24E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene53150 | 0.813524 | 2.45E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene53150 | 0.845116 | 4.96E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene53150 | 0.803286 | 3.75E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene53150 | 0.829745 | 4.34E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene53150 | 0.811168 | 8.01E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene53150 | 0.802369 | 5.80E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene53150 | 0.8077 | 4.45E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene53150 | 0.812646 | 3.82E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene53150 | 0.845556 | 3.77E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene53150 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene53150 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene53150 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene53150 | 0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene53150 | 0.803145 | 4.01E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene53150 | 0.852411 | 4.70E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene53150 | 0.838566 | 2.66E-57 | -1.69E-46 |
| MS.gene057048 | MS.gene53150 | 0.806388 | 8.43E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene53150 | 0.810059 | 1.39E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene53150 | 0.811044 | 8.52E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene53150 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene53150 | 0.820439 | 6.86E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene53150 | 0.839996 | 1.13E-57 | -1.69E-46 |
| MS.gene057196 | MS.gene53150 | 0.816785 | 4.62E-52 | -1.69E-46 |
| MS.gene057310 | MS.gene53150 | 0.808859 | 2.52E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene53150 | 0.846893 | 1.63E-59 | -1.69E-46 |
| MS.gene057749 | MS.gene53150 | 0.818391 | 2.01E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene53150 | 0.821808 | 3.32E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene53150 | 0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene53150 | 0.873292 | 1.65E-67 | -1.69E-46 |
| MS.gene058233 | MS.gene53150 | 0.874632 | 5.80E-68 | -1.69E-46 |
| MS.gene058293 | MS.gene53150 | 0.828735 | 7.62E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene53150 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene53150 | 0.827315 | 1.67E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene53150 | 0.818829 | 1.60E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene53150 | 0.831665 | 1.47E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene53150 | 0.804358 | 2.24E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene53150 | 0.810338 | 1.21E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene53150 | 0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene53150 | 0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene53150 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene53150 | 0.824202 | 9.17E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene53150 | 0.813959 | 1.97E-51 | -1.69E-46 |
| MS.gene059455 | MS.gene53150 | 0.81553 | 8.82E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene53150 | 0.838381 | 2.97E-57 | -1.69E-46 |
| MS.gene059597 | MS.gene53150 | 0.832624 | 8.50E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene53150 | 0.83238 | 9.77E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene53150 | 0.854138 | 1.50E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene53150 | 0.854119 | 1.52E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene53150 | 0.856425 | 3.25E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene53150 | 0.803663 | 3.13E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene53150 | 0.848876 | 4.63E-60 | -1.69E-46 |
| MS.gene060087 | MS.gene53150 | -0.801682 | 8.03E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene53150 | 0.830388 | 3.02E-55 | -1.69E-46 |
| MS.gene060407 | MS.gene53150 | 0.803418 | 3.52E-49 | -1.69E-46 |
| MS.gene060675 | MS.gene53150 | 0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene53150 | 0.841076 | 5.92E-58 | -1.69E-46 |
| MS.gene060835 | MS.gene53150 | 0.826811 | 2.21E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene53150 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene53150 | 0.820873 | 5.45E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene53150 | 0.845801 | 3.24E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene53150 | -0.818689 | 1.72E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene53150 | 0.812152 | 4.90E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene53150 | 0.821638 | 3.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53150.t1 | MTR_5g043580 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 1.92e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53150.t1 | AT2G03420 | 73.585 | 106 | 28 | 0 | 69 | 174 | 63 | 168 | 1.00e-53 | 168 |
Find 36 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTACGAGGGGCGGAAT+GGG | 0.329826 | 5.4:-32806750 | MS.gene53150:CDS |
| CTTCTATTGCAATTCTTCTC+TGG | 0.348974 | 5.4:-32808124 | MS.gene53150:CDS |
| ATGAATTTGTCCCTTGCCTC+TGG | 0.354711 | 5.4:+32806695 | None:intergenic |
| CCTCAAAAGAAGGTTCAGTT+TGG | 0.387035 | 5.4:-32808233 | MS.gene53150:CDS |
| TGAAACCATTAAAACGTTTG+AGG | 0.439460 | 5.4:+32807584 | None:intergenic |
| AAGTCAATCTGAGGCAGCTC+AGG | 0.441780 | 5.4:+32807607 | None:intergenic |
| GTAAGAATGATGAGAAGATA+AGG | 0.480601 | 5.4:+32808178 | None:intergenic |
| CGAGGGGCGGAATGGGGAGT+TGG | 0.490686 | 5.4:-32806743 | MS.gene53150:CDS |
| GCTCAAGCAGTTTCTTCACC+AGG | 0.491458 | 5.4:+32807416 | None:intergenic |
| ACTGCTTACGAGGGGCGGAA+TGG | 0.499290 | 5.4:-32806751 | MS.gene53150:CDS |
| CATAGCAATGTTGAAGGAGA+AGG | 0.511435 | 5.4:-32806675 | MS.gene53150:CDS |
| GCACATGCTGGATTCATGTC+AGG | 0.519014 | 5.4:-32807658 | MS.gene53150:CDS |
| CAAATTCATAGCAATGTTGA+AGG | 0.527626 | 5.4:-32806681 | MS.gene53150:CDS |
| ATTCTTCTCTGGTCAACTCC+AGG | 0.534134 | 5.4:-32808113 | MS.gene53150:intron |
| CTCAAGCAGTTTCTTCACCA+GGG | 0.535692 | 5.4:+32807417 | None:intergenic |
| ATCTGAGGCAGCTCAGGACC+AGG | 0.536804 | 5.4:+32807613 | None:intergenic |
| ACTGAGCAATCCTCAAAAGA+AGG | 0.537649 | 5.4:-32808243 | MS.gene53150:CDS |
| GTGGAAATCTGAATGAAAGA+TGG | 0.538239 | 5.4:+32808278 | None:intergenic |
| GGGAATGACTCCAGAGGCAA+GGG | 0.550474 | 5.4:-32806705 | MS.gene53150:CDS |
| GGATTCATGTCAGGAATCAC+AGG | 0.551319 | 5.4:-32807649 | MS.gene53150:CDS |
| TCAAGCAGTTTCTTCACCAG+GGG | 0.567433 | 5.4:+32807418 | None:intergenic |
| TGCTTACGAGGGGCGGAATG+GGG | 0.568619 | 5.4:-32806749 | MS.gene53150:CDS |
| AATGAAAGATGGTAATGAAG+AGG | 0.576236 | 5.4:+32808289 | None:intergenic |
| AGGGAATGACTCCAGAGGCA+AGG | 0.577514 | 5.4:-32806706 | MS.gene53150:CDS |
| GAGAACAAGTACTGCTTACG+AGG | 0.584541 | 5.4:-32806761 | MS.gene53150:CDS |
| GTTGGTGATTGTTCAGCAGA+GGG | 0.594398 | 5.4:-32806725 | MS.gene53150:CDS |
| AGTTGGTGATTGTTCAGCAG+AGG | 0.606424 | 5.4:-32806726 | MS.gene53150:CDS |
| CAAGTACTGCTTACGAGGGG+CGG | 0.612792 | 5.4:-32806756 | MS.gene53150:CDS |
| ACAGGACTAGAGTCTGTACC+TGG | 0.626927 | 5.4:-32807631 | MS.gene53150:CDS |
| GCAATGTTGAAGGAGAAGGT+TGG | 0.630694 | 5.4:-32806671 | MS.gene53150:CDS |
| CGTTTGAGGAAGTCAATCTG+AGG | 0.656409 | 5.4:+32807598 | None:intergenic |
| AGAACAAGTACTGCTTACGA+GGG | 0.671236 | 5.4:-32806760 | MS.gene53150:CDS |
| ATTGCAATAGAAGCAGCCAA+AGG | 0.674848 | 5.4:+32808134 | None:intergenic |
| AAGATTTAAAGAGACACCCC+TGG | 0.680049 | 5.4:-32807434 | MS.gene53150:CDS |
| AGCAGAGGGAATGACTCCAG+AGG | 0.703314 | 5.4:-32806711 | MS.gene53150:CDS |
| GAACAAGTACTGCTTACGAG+GGG | 0.743478 | 5.4:-32806759 | MS.gene53150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCATATAAGTAACT+AGG | - | chr5.4:32807867-32807886 | MS.gene53150:intron | 15.0% |
| !! | TAATGTCCAATTAAAAAAAT+TGG | - | chr5.4:32807756-32807775 | MS.gene53150:intron | 15.0% |
| !! | TTTGAATGGTTAATATATTT+CGG | - | chr5.4:32808006-32808025 | MS.gene53150:intron | 15.0% |
| !! | AGTTTCATTTCATGAAATTT+AGG | + | chr5.4:32807436-32807455 | None:intergenic | 20.0% |
| !! | ATTGACAAAAATGTAAGAAT+TGG | - | chr5.4:32807920-32807939 | MS.gene53150:intron | 20.0% |
| !! | CTTTAATTCTTAAGAATCAT+AGG | + | chr5.4:32807180-32807199 | None:intergenic | 20.0% |
| ! | AAATTGTGTATGAGAAATGT+TGG | + | chr5.4:32807715-32807734 | None:intergenic | 25.0% |
| ! | AACATTTCTCATACACAATT+TGG | - | chr5.4:32807714-32807733 | MS.gene53150:intron | 25.0% |
| ! | ACCATTCAAAAATAAAGTCA+TGG | + | chr5.4:32807996-32808015 | None:intergenic | 25.0% |
| ! | CTCACAAAAAAGAATATTAC+AGG | + | chr5.4:32807959-32807978 | None:intergenic | 25.0% |
| ! | TAGCCTAAAAAAATGATAAG+AGG | + | chr5.4:32807842-32807861 | None:intergenic | 25.0% |
| ! | TCCAATTAAAAAAATTGGCT+CGG | - | chr5.4:32807761-32807780 | MS.gene53150:intron | 25.0% |
| ! | TTAATACCGAGACAAATAAT+AGG | + | chr5.4:32808086-32808105 | None:intergenic | 25.0% |
| ! | TTAGATCCTATTATTTGTCT+CGG | - | chr5.4:32808077-32808096 | MS.gene53150:intron | 25.0% |
| !! | AAGATAGTTTGAGTTAGTTA+GGG | - | chr5.4:32807056-32807075 | MS.gene53150:intron | 25.0% |
| !! | TAAGATAGTTTGAGTTAGTT+AGG | - | chr5.4:32807055-32807074 | MS.gene53150:intron | 25.0% |
| !! | TTTTGTCAATATAAGAAGAC+AGG | + | chr5.4:32807910-32807929 | None:intergenic | 25.0% |
| !!! | ACCATGACTTTATTTTTGAA+TGG | - | chr5.4:32807992-32808011 | MS.gene53150:intron | 25.0% |
| ACATATCAACATAGCACTTT+AGG | + | chr5.4:32807675-32807694 | None:intergenic | 30.0% | |
| ATATGAGATAGAGATAGCAT+AGG | + | chr5.4:32807133-32807152 | None:intergenic | 30.0% | |
| CAAATTCATAGCAATGTTGA+AGG | - | chr5.4:32808276-32808295 | MS.gene53150:CDS | 30.0% | |
| CACAACATGTTATAAGAGTT+TGG | + | chr5.4:32807403-32807422 | None:intergenic | 30.0% | |
| CATATCAACATAGCACTTTA+GGG | + | chr5.4:32807674-32807693 | None:intergenic | 30.0% | |
| GTAAGAATGATGAGAAGATA+AGG | + | chr5.4:32806782-32806801 | None:intergenic | 30.0% | |
| TCTTCAAAAATCAGTTCCTT+TGG | - | chr5.4:32806807-32806826 | MS.gene53150:intron | 30.0% | |
| TGAAACCATTAAAACGTTTG+AGG | + | chr5.4:32807376-32807395 | None:intergenic | 30.0% | |
| ! | AAAGTGCTATGTTGATATGT+CGG | - | chr5.4:32807675-32807694 | MS.gene53150:intron | 30.0% |
| ! | AATGAAAGATGGTAATGAAG+AGG | + | chr5.4:32806671-32806690 | None:intergenic | 30.0% |
| ! | CATTTTCAGCATATTTCTTC+TGG | + | chr5.4:32807499-32807518 | None:intergenic | 30.0% |
| !!! | GAGCCTCTTATCATTTTTTT+AGG | - | chr5.4:32807836-32807855 | MS.gene53150:intron | 30.0% |
| !!! | TCCGAGCCAATTTTTTTAAT+TGG | + | chr5.4:32807765-32807784 | None:intergenic | 30.0% |
| ATAAGAGGCTCAATAGATGT+TGG | + | chr5.4:32807827-32807846 | None:intergenic | 35.0% | |
| ATCTTTGTGCTTTACTCTTC+AGG | - | chr5.4:32808158-32808177 | MS.gene53150:CDS | 35.0% | |
| CTGCATTAAAGCATGGTAAA+AGG | + | chr5.4:32806878-32806897 | None:intergenic | 35.0% | |
| CTTCTATTGCAATTCTTCTC+TGG | - | chr5.4:32806833-32806852 | MS.gene53150:intron | 35.0% | |
| GTGGAAATCTGAATGAAAGA+TGG | + | chr5.4:32806682-32806701 | None:intergenic | 35.0% | |
| TGACGATTATGATTGATCGA+CGG | - | chr5.4:32807219-32807238 | MS.gene53150:intron | 35.0% | |
| TTCATTAGAGACACATGCTA+AGG | - | chr5.4:32806920-32806939 | MS.gene53150:intron | 35.0% | |
| ! | ATTGCTCAGTTTTTCACAGA+AGG | + | chr5.4:32806704-32806723 | None:intergenic | 35.0% |
| ! | GACTTCCTCAAACGTTTTAA+TGG | - | chr5.4:32807368-32807387 | MS.gene53150:intron | 35.0% |
| ! | TGGTAAAAGGTTACTTTACC+TGG | + | chr5.4:32806865-32806884 | None:intergenic | 35.0% |
| ! | TTGATATGTCGGATACGTTT+TGG | - | chr5.4:32807686-32807705 | MS.gene53150:intron | 35.0% |
| !! | TGAGTTAGTTAGGGTTAGTT+AGG | - | chr5.4:32807065-32807084 | MS.gene53150:intron | 35.0% |
| AAGATTTAAAGAGACACCCC+TGG | - | chr5.4:32807523-32807542 | MS.gene53150:intron | 40.0% | |
| ACTGAGCAATCCTCAAAAGA+AGG | - | chr5.4:32806714-32806733 | MS.gene53150:CDS | 40.0% | |
| ATAGGATCTAATGCACACAC+CGG | + | chr5.4:32808068-32808087 | None:intergenic | 40.0% | |
| ATTGCAATAGAAGCAGCCAA+AGG | + | chr5.4:32806826-32806845 | None:intergenic | 40.0% | |
| CATAGCAATGTTGAAGGAGA+AGG | - | chr5.4:32808282-32808301 | MS.gene53150:CDS | 40.0% | |
| CCTCAAAAGAAGGTTCAGTT+TGG | - | chr5.4:32806724-32806743 | MS.gene53150:CDS | 40.0% | |
| TTGCATGCTGCATTAAAGCA+TGG | + | chr5.4:32806885-32806904 | None:intergenic | 40.0% | |
| ! | AGAACAAGTACTGCTTACGA+GGG | - | chr5.4:32808197-32808216 | MS.gene53150:CDS | 40.0% |
| ! | CCAAACTGAACCTTCTTTTG+AGG | + | chr5.4:32806727-32806746 | None:intergenic | 40.0% |
| !!! | TCTTATTTTGCAGCACATGC+TGG | - | chr5.4:32807287-32807306 | MS.gene53150:intron | 40.0% |
| ATCTAATGCACACACCGGAT+AGG | + | chr5.4:32808063-32808082 | None:intergenic | 45.0% | |
| ATGAATTTGTCCCTTGCCTC+TGG | + | chr5.4:32808265-32808284 | None:intergenic | 45.0% | |
| ATTCTTCTCTGGTCAACTCC+AGG | - | chr5.4:32806844-32806863 | MS.gene53150:intron | 45.0% | |
| CGTTTGAGGAAGTCAATCTG+AGG | + | chr5.4:32807362-32807381 | None:intergenic | 45.0% | |
| CTCAAGCAGTTTCTTCACCA+GGG | + | chr5.4:32807543-32807562 | None:intergenic | 45.0% | |
| GCAATGTTGAAGGAGAAGGT+TGG | - | chr5.4:32808286-32808305 | MS.gene53150:CDS | 45.0% | |
| GGATTCATGTCAGGAATCAC+AGG | - | chr5.4:32807308-32807327 | MS.gene53150:intron | 45.0% | |
| GTGTCTCTCTTTGTCCTATC+CGG | - | chr5.4:32808046-32808065 | MS.gene53150:intron | 45.0% | |
| TCAAGCAGTTTCTTCACCAG+GGG | + | chr5.4:32807542-32807561 | None:intergenic | 45.0% | |
| ! | AGGCTCAATAGATGTTGGCT+CGG | + | chr5.4:32807822-32807841 | None:intergenic | 45.0% |
| ! | CAACATAGCACTTTAGGGAG+AGG | + | chr5.4:32807669-32807688 | None:intergenic | 45.0% |
| ! | GAACAAGTACTGCTTACGAG+GGG | - | chr5.4:32808198-32808217 | MS.gene53150:CDS | 45.0% |
| ! | GAGAACAAGTACTGCTTACG+AGG | - | chr5.4:32808196-32808215 | MS.gene53150:CDS | 45.0% |
| ! | GCTCAGTTTTTCACAGAAGG+TGG | + | chr5.4:32806701-32806720 | None:intergenic | 45.0% |
| !! | AAAATTGGCTCGGACCTGTT+AGG | - | chr5.4:32807771-32807790 | MS.gene53150:intron | 45.0% |
| !! | AGTTGGTGATTGTTCAGCAG+AGG | - | chr5.4:32808231-32808250 | MS.gene53150:CDS | 45.0% |
| !! | GTTGGTGATTGTTCAGCAGA+GGG | - | chr5.4:32808232-32808251 | MS.gene53150:CDS | 45.0% |
| ACAGGACTAGAGTCTGTACC+TGG | - | chr5.4:32807326-32807345 | MS.gene53150:intron | 50.0% | |
| CAAAGAGAGACACCGCAACA+CGG | + | chr5.4:32808039-32808058 | None:intergenic | 50.0% | |
| GCACATGCTGGATTCATGTC+AGG | - | chr5.4:32807299-32807318 | MS.gene53150:intron | 50.0% | |
| GCTCAAGCAGTTTCTTCACC+AGG | + | chr5.4:32807544-32807563 | None:intergenic | 50.0% | |
| GTGTCCAAGACATGCCTAAC+AGG | + | chr5.4:32807788-32807807 | None:intergenic | 50.0% | |
| ! | AAGTCAATCTGAGGCAGCTC+AGG | + | chr5.4:32807353-32807372 | None:intergenic | 50.0% |
| AGCAGAGGGAATGACTCCAG+AGG | - | chr5.4:32808246-32808265 | MS.gene53150:CDS | 55.0% | |
| AGGGAATGACTCCAGAGGCA+AGG | - | chr5.4:32808251-32808270 | MS.gene53150:CDS | 55.0% | |
| CGGACCTGTTAGGCATGTCT+TGG | - | chr5.4:32807781-32807800 | MS.gene53150:intron | 55.0% | |
| GGGAATGACTCCAGAGGCAA+GGG | - | chr5.4:32808252-32808271 | MS.gene53150:CDS | 55.0% | |
| GGTGTCTGTGCTGTGCTCAT+AGG | + | chr5.4:32807648-32807667 | None:intergenic | 55.0% | |
| TTCGGACACAAGCCGTGTTG+CGG | - | chr5.4:32808024-32808043 | MS.gene53150:intron | 55.0% | |
| ! | CAAGTACTGCTTACGAGGGG+CGG | - | chr5.4:32808201-32808220 | MS.gene53150:CDS | 55.0% |
| ACTGCTTACGAGGGGCGGAA+TGG | - | chr5.4:32808206-32808225 | MS.gene53150:CDS | 60.0% | |
| CTGCTTACGAGGGGCGGAAT+GGG | - | chr5.4:32808207-32808226 | MS.gene53150:CDS | 60.0% | |
| TGCTTACGAGGGGCGGAATG+GGG | - | chr5.4:32808208-32808227 | MS.gene53150:CDS | 60.0% | |
| ! | ATCTGAGGCAGCTCAGGACC+AGG | + | chr5.4:32807347-32807366 | None:intergenic | 60.0% |
| CGAGGGGCGGAATGGGGAGT+TGG | - | chr5.4:32808214-32808233 | MS.gene53150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 32806661 | 32808318 | 32806661 | ID=MS.gene53150 |
| chr5.4 | mRNA | 32806661 | 32808318 | 32806661 | ID=MS.gene53150.t1;Parent=MS.gene53150 |
| chr5.4 | exon | 32808114 | 32808318 | 32808114 | ID=MS.gene53150.t1.exon1;Parent=MS.gene53150.t1 |
| chr5.4 | CDS | 32808114 | 32808318 | 32808114 | ID=cds.MS.gene53150.t1;Parent=MS.gene53150.t1 |
| chr5.4 | exon | 32807590 | 32807679 | 32807590 | ID=MS.gene53150.t1.exon2;Parent=MS.gene53150.t1 |
| chr5.4 | CDS | 32807590 | 32807679 | 32807590 | ID=cds.MS.gene53150.t1;Parent=MS.gene53150.t1 |
| chr5.4 | exon | 32807394 | 32807490 | 32807394 | ID=MS.gene53150.t1.exon3;Parent=MS.gene53150.t1 |
| chr5.4 | CDS | 32807394 | 32807490 | 32807394 | ID=cds.MS.gene53150.t1;Parent=MS.gene53150.t1 |
| chr5.4 | exon | 32806661 | 32806799 | 32806661 | ID=MS.gene53150.t1.exon4;Parent=MS.gene53150.t1 |
| chr5.4 | CDS | 32806661 | 32806799 | 32806661 | ID=cds.MS.gene53150.t1;Parent=MS.gene53150.t1 |
| Gene Sequence |
| Protein sequence |
