Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55539.t1 | AET04724.1 | 92.3 | 39 | 3 | 0 | 127 | 165 | 57 | 95 | 4.50E-10 | 74.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55539.t1 | G7LD85 | 92.3 | 39 | 3 | 0 | 127 | 165 | 57 | 95 | 3.2e-10 | 74.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene55539 | 0.801747 | 7.78E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene55539 | 0.855932 | 4.53E-62 | -1.69E-46 |
| MS.gene049254 | MS.gene55539 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene049272 | MS.gene55539 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene55539 | 0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene55539 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene55539 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene55539 | 0.818992 | 1.47E-52 | -1.69E-46 |
| MS.gene049647 | MS.gene55539 | 0.816478 | 5.42E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene55539 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene55539 | 0.802779 | 4.77E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene55539 | 0.810853 | 9.38E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene55539 | 0.820097 | 8.21E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene55539 | 0.82844 | 8.98E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene55539 | 0.834073 | 3.70E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene55539 | 0.8451 | 5.01E-59 | -1.69E-46 |
| MS.gene050719 | MS.gene55539 | 0.843361 | 1.47E-58 | -1.69E-46 |
| MS.gene050721 | MS.gene55539 | 0.843756 | 1.15E-58 | -1.69E-46 |
| MS.gene050724 | MS.gene55539 | 0.838495 | 2.78E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene55539 | 0.81319 | 2.90E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene55539 | 0.84016 | 1.03E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene55539 | 0.809374 | 1.95E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene55539 | 0.835843 | 1.33E-56 | -1.69E-46 |
| MS.gene050962 | MS.gene55539 | 0.801922 | 7.16E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene55539 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene051210 | MS.gene55539 | 0.841875 | 3.64E-58 | -1.69E-46 |
| MS.gene051247 | MS.gene55539 | 0.806708 | 7.21E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene55539 | 0.80941 | 1.92E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene55539 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene55539 | 0.814617 | 1.41E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene55539 | 0.819501 | 1.12E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene55539 | 0.825377 | 4.84E-54 | -1.69E-46 |
| MS.gene052108 | MS.gene55539 | 0.800195 | 1.61E-48 | -1.69E-46 |
| MS.gene052376 | MS.gene55539 | 0.805852 | 1.09E-49 | -1.69E-46 |
| MS.gene052384 | MS.gene55539 | 0.819052 | 1.42E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene55539 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene55539 | 0.837446 | 5.17E-57 | -1.69E-46 |
| MS.gene052611 | MS.gene55539 | 0.81324 | 2.83E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene55539 | 0.818965 | 1.49E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene55539 | 0.858491 | 7.94E-63 | -1.69E-46 |
| MS.gene052867 | MS.gene55539 | 0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene55539 | 0.815066 | 1.12E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene55539 | 0.831877 | 1.30E-55 | -1.69E-46 |
| MS.gene05289 | MS.gene55539 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene053008 | MS.gene55539 | 0.839452 | 1.57E-57 | -1.69E-46 |
| MS.gene053221 | MS.gene55539 | 0.804864 | 1.76E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene55539 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene55539 | 0.810745 | 9.89E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene55539 | 0.824154 | 9.41E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene55539 | 0.845194 | 4.73E-59 | -1.69E-46 |
| MS.gene054467 | MS.gene55539 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene55539 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene55539 | 0.846383 | 2.25E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene55539 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene054658 | MS.gene55539 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene55539 | 0.826677 | 2.38E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene55539 | 0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene55539 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene55539 | 0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene55539 | 0.826532 | 2.58E-54 | -1.69E-46 |
| MS.gene055357 | MS.gene55539 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene055363 | MS.gene55539 | 0.800187 | 1.62E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene55539 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene55539 | 0.828843 | 7.18E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene55539 | 0.81131 | 7.47E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene55539 | 0.856803 | 2.51E-62 | -1.69E-46 |
| MS.gene055926 | MS.gene55539 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene05604 | MS.gene55539 | 0.817267 | 3.60E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene55539 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene55539 | 0.827703 | 1.35E-54 | -1.69E-46 |
| MS.gene056595 | MS.gene55539 | 0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene55539 | 0.809453 | 1.88E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene55539 | 0.832209 | 1.08E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene55539 | 0.806201 | 9.23E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene55539 | 0.80861 | 2.85E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene55539 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene55539 | 0.829721 | 4.39E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene55539 | 0.829993 | 3.77E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene55539 | 0.82038 | 7.07E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene55539 | 0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene55539 | 0.804916 | 1.72E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene55539 | 0.835707 | 1.43E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene55539 | 0.830033 | 3.69E-55 | -1.69E-46 |
| MS.gene058426 | MS.gene55539 | 0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene55539 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene55539 | 0.832694 | 8.17E-56 | -1.69E-46 |
| MS.gene058636 | MS.gene55539 | 0.828379 | 9.29E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene55539 | 0.813169 | 2.93E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene55539 | 0.836808 | 7.53E-57 | -1.69E-46 |
| MS.gene059249 | MS.gene55539 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene55539 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene55539 | 0.820349 | 7.19E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene55539 | 0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene55539 | 0.825565 | 4.37E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene55539 | 0.817829 | 2.69E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene55539 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene55539 | 0.872088 | 4.16E-67 | -1.69E-46 |
| MS.gene06052 | MS.gene55539 | 0.82972 | 4.40E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene55539 | 0.838252 | 3.21E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene55539 | 0.833218 | 6.05E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene55539 | 0.834178 | 3.48E-56 | -1.69E-46 |
| MS.gene060781 | MS.gene55539 | 0.823547 | 1.31E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene55539 | 0.806146 | 9.48E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene55539 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene55539 | 0.842357 | 2.72E-58 | -1.69E-46 |
| MS.gene061040 | MS.gene55539 | -0.810247 | 1.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55539.t1 | MTR_8g093450 | 92.308 | 39 | 3 | 0 | 127 | 165 | 57 | 95 | 2.30e-19 | 78.2 |
| MS.gene55539.t1 | MTR_1g007860 | 53.846 | 78 | 30 | 1 | 73 | 144 | 148 | 225 | 4.05e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 2.16e-11 | 61.2 |
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 2.38e-11 | 60.8 |
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 2.59e-11 | 61.2 |
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 2.59e-11 | 61.2 |
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 2.85e-11 | 61.2 |
| MS.gene55539.t1 | AT5G53050 | 51.923 | 52 | 25 | 0 | 93 | 144 | 162 | 213 | 3.01e-11 | 60.8 |
Find 52 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTTGTTGGAACAATTT+AGG | 0.136187 | 6.2:+17553276 | None:intergenic |
| GAATTTGTTGGAACAATTTA+GGG | 0.268936 | 6.2:+17553277 | None:intergenic |
| TCAATCTCCTTCGTTGTATT+CGG | 0.321316 | 6.2:+17553250 | None:intergenic |
| AGATTCATGTACCACTCTTT+TGG | 0.324638 | 6.2:-17553629 | None:intergenic |
| ATGGAGCCGTCGGAGATAAT+TGG | 0.326324 | 6.2:+17553426 | None:intergenic |
| TCAACTTCAGCTCTTTGTTC+AGG | 0.335642 | 6.2:+17552032 | None:intergenic |
| TTCAAACTTACAGATGGGTT+TGG | 0.369413 | 6.2:+17553219 | None:intergenic |
| CTATCTCTCTACCCATTCTT+AGG | 0.381793 | 6.2:-17553381 | MS.gene55539:CDS |
| AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 6.2:-17551451 | MS.gene55539:CDS |
| CGTTGCTTACCGATTCTTGA+AGG | 0.403054 | 6.2:-17552063 | MS.gene55539:CDS |
| GACTCTTTGCCTTCAAGAAT+CGG | 0.405184 | 6.2:+17552054 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 6.2:-17551536 | MS.gene55539:CDS |
| CGTGGAGAGAGTAGCACCTT+TGG | 0.433752 | 6.2:+17553464 | None:intergenic |
| GACGCCATCGCAGAGGGTTG+AGG | 0.441533 | 6.2:+17553303 | None:intergenic |
| ACGCCATCGCAGAGGGTTGA+GGG | 0.450088 | 6.2:+17553304 | None:intergenic |
| CGTGCTTTACTTGTGAATAG+TGG | 0.457639 | 6.2:+17552000 | None:intergenic |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.467919 | 6.2:-17551483 | MS.gene55539:CDS |
| AGAAATCCGTCGCCTAAGAA+TGG | 0.490312 | 6.2:+17553369 | None:intergenic |
| CTCTACCCATTCTTAGGCGA+CGG | 0.499803 | 6.2:-17553375 | MS.gene55539:CDS |
| AGATAGAGCCGTCGGAGAGA+GGG | 0.516886 | 6.2:+17553398 | None:intergenic |
| GAAATCCGTCGCCTAAGAAT+GGG | 0.522876 | 6.2:+17553370 | None:intergenic |
| CTCTCTCCAATTATCTCCGA+CGG | 0.524152 | 6.2:-17553432 | MS.gene55539:CDS |
| GCAGAGGGTTGAGGGAGAGA+TGG | 0.536802 | 6.2:+17553312 | None:intergenic |
| ACAAAGAGCTGAAGTTGACT+TGG | 0.536899 | 6.2:-17552027 | MS.gene55539:CDS |
| AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 6.2:-17551450 | MS.gene55539:CDS |
| GTATTCGGATCGGAATTTGT+TGG | 0.541106 | 6.2:+17553265 | None:intergenic |
| CTCCTTCGTTGTATTCGGAT+CGG | 0.544855 | 6.2:+17553255 | None:intergenic |
| GCTACTCTCTCCACGCGACC+AGG | 0.554010 | 6.2:-17553456 | MS.gene55539:CDS |
| CGTCGGAGAGAGGGTTGAGA+TGG | 0.556597 | 6.2:+17553407 | None:intergenic |
| GAGATAGAGCCGTCGGAGAG+AGG | 0.557135 | 6.2:+17553397 | None:intergenic |
| GAGGGTTGAGATGGAGCCGT+CGG | 0.563783 | 6.2:+17553416 | None:intergenic |
| ATGGAGAGATCCTTCGCAGA+AGG | 0.567416 | 6.2:+17553331 | None:intergenic |
| GCAGAAGGTTGAGTGAGAGA+TGG | 0.569783 | 6.2:+17553346 | None:intergenic |
| TCTCCCTCAACCCTCTGCGA+TGG | 0.572168 | 6.2:-17553307 | MS.gene55539:CDS |
| TATCAGTTTAACAAAGAGGA+GGG | 0.577814 | 6.2:-17551488 | MS.gene55539:CDS |
| GTATTATCAGTTTAACAAAG+AGG | 0.579681 | 6.2:-17551492 | MS.gene55539:CDS |
| GGGTAGAGAGATAGAGCCGT+CGG | 0.580351 | 6.2:+17553390 | None:intergenic |
| GGGAGAGACGCCATCGCAGA+GGG | 0.580382 | 6.2:+17553297 | None:intergenic |
| AAGCAACGGAAATTGTTTGT+CGG | 0.582137 | 6.2:+17552078 | None:intergenic |
| TGGAGAGAGACCTGGTCGCG+TGG | 0.590287 | 6.2:+17553446 | None:intergenic |
| TCTCACTCAACCTTCTGCGA+AGG | 0.597853 | 6.2:-17553341 | MS.gene55539:CDS |
| GTGCTTTACTTGTGAATAGT+GGG | 0.598972 | 6.2:+17552001 | None:intergenic |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 6.2:-17551519 | MS.gene55539:CDS |
| CATCTCAACCCTCTCTCCGA+CGG | 0.611658 | 6.2:-17553406 | MS.gene55539:CDS |
| TTATCAGTTTAACAAAGAGG+AGG | 0.617782 | 6.2:-17551489 | MS.gene55539:CDS |
| GAGATAATTGGAGAGAGACC+TGG | 0.626974 | 6.2:+17553438 | None:intergenic |
| GAAAGGGTGTACCAAAAGAG+TGG | 0.633387 | 6.2:+17553618 | None:intergenic |
| CTTCAAGAATCGGTAAGCAA+CGG | 0.635885 | 6.2:+17552064 | None:intergenic |
| GTCGAAGAACAGAAAACCAA+AGG | 0.638504 | 6.2:-17553480 | MS.gene55539:intron |
| AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 6.2:-17551446 | MS.gene55539:CDS |
| AGGGAGAGACGCCATCGCAG+AGG | 0.661464 | 6.2:+17553296 | None:intergenic |
| TTCCGATCCGAATACAACGA+AGG | 0.672525 | 6.2:-17553257 | MS.gene55539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGAAAAGTTTAAAAAAT+TGG | + | chr6.2:17552017-17552036 | None:intergenic | 10.0% |
| !! | ATAGAAAAGTTTAAAAAATT+GGG | + | chr6.2:17552016-17552035 | None:intergenic | 10.0% |
| !! | AAATGGTTTATTATAAGATT+TGG | - | chr6.2:17552049-17552068 | MS.gene55539:CDS | 15.0% |
| !! | ATAGATTATGTTAATTGAAA+AGG | - | chr6.2:17551513-17551532 | MS.gene55539:CDS | 15.0% |
| !! | ATGCTTAATACAAATTTAAT+CGG | - | chr6.2:17552810-17552829 | MS.gene55539:intron | 15.0% |
| !! | ATTAAATTTGTATTAAGCAT+TGG | + | chr6.2:17552810-17552829 | None:intergenic | 15.0% |
| !!! | AAATGTTTCGATTTTTTTTA+CGG | - | chr6.2:17552261-17552280 | MS.gene55539:intron | 15.0% |
| !!! | TTTTAAAATCACTACTTTAA+TGG | + | chr6.2:17553167-17553186 | None:intergenic | 15.0% |
| !! | AATTATGTTTGTATTGAAAC+AGG | - | chr6.2:17552105-17552124 | MS.gene55539:intron | 20.0% |
| !! | CTATTCAGTTTAAATTCAAA+TGG | - | chr6.2:17552032-17552051 | MS.gene55539:CDS | 20.0% |
| !! | TGCAATTAGATATATAATGT+TGG | - | chr6.2:17552841-17552860 | MS.gene55539:intron | 20.0% |
| !! | TTAAAAAATTGAATCACTCA+AGG | - | chr6.2:17553181-17553200 | MS.gene55539:intron | 20.0% |
| !!! | AATTTCTTACTACTGATTTT+AGG | - | chr6.2:17552609-17552628 | MS.gene55539:intron | 20.0% |
| !!! | GTTTATTATAAGATTTGGTT+AGG | - | chr6.2:17552054-17552073 | MS.gene55539:CDS | 20.0% |
| !!! | TATTAACATTAAGTTGAAGA+AGG | - | chr6.2:17553253-17553272 | MS.gene55539:CDS | 20.0% |
| ! | AATGGTAGTTTAATATAGCT+GGG | + | chr6.2:17553149-17553168 | None:intergenic | 25.0% |
| ! | ACAAATTTCAAACTTACAGA+TGG | + | chr6.2:17551852-17551871 | None:intergenic | 25.0% |
| ! | ACATTTCACAGATTTATACA+AGG | + | chr6.2:17552247-17552266 | None:intergenic | 25.0% |
| ! | AGAGGAATGATAAAAGAATA+TGG | + | chr6.2:17551897-17551916 | None:intergenic | 25.0% |
| ! | CAAATTTCAAACTTACAGAT+GGG | + | chr6.2:17551851-17551870 | None:intergenic | 25.0% |
| ! | GTATATGATATAAAAGAGTC+TGG | - | chr6.2:17553211-17553230 | MS.gene55539:intron | 25.0% |
| ! | GTATTATCAGTTTAACAAAG+AGG | - | chr6.2:17553570-17553589 | MS.gene55539:intron | 25.0% |
| ! | TAATATAGAAGAGAAAGTCA+CGG | - | chr6.2:17552476-17552495 | MS.gene55539:intron | 25.0% |
| ! | TAATGGTAGTTTAATATAGC+TGG | + | chr6.2:17553150-17553169 | None:intergenic | 25.0% |
| ! | TTTAATTACAAACGTAGTTC+AGG | - | chr6.2:17552558-17552577 | MS.gene55539:intron | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | - | chr6.2:17553379-17553398 | MS.gene55539:CDS | 25.0% |
| !! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr6.2:17553611-17553630 | MS.gene55539:intron | 25.0% |
| !! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr6.2:17553612-17553631 | MS.gene55539:intron | 25.0% |
| !!! | GAATTTGTTGGAACAATTTA+GGG | + | chr6.2:17551788-17551807 | None:intergenic | 25.0% |
| !!! | TTTTTTTAATGCCATGTCAT+GGG | + | chr6.2:17551476-17551495 | None:intergenic | 25.0% |
| !!! | TTTTTTTTAATGCCATGTCA+TGG | + | chr6.2:17551477-17551496 | None:intergenic | 25.0% |
| AACTAACTACATTGGGAATT+GGG | - | chr6.2:17552331-17552350 | MS.gene55539:intron | 30.0% | |
| ACTGTACCTGATATACAATA+TGG | + | chr6.2:17553444-17553463 | None:intergenic | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | + | chr6.2:17553524-17553543 | None:intergenic | 30.0% | |
| ATGGTAGTTTAATATAGCTG+GGG | + | chr6.2:17553148-17553167 | None:intergenic | 30.0% | |
| CTAAATTTCTCCTAAAGGTT+TGG | + | chr6.2:17552675-17552694 | None:intergenic | 30.0% | |
| CTCAACTAAATTTCTCCTAA+AGG | + | chr6.2:17552680-17552699 | None:intergenic | 30.0% | |
| CTGAAAAGAAGCTTCAATTT+AGG | - | chr6.2:17553469-17553488 | MS.gene55539:CDS | 30.0% | |
| GAAGTTGCATACATAACAAA+TGG | - | chr6.2:17552586-17552605 | MS.gene55539:intron | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | - | chr6.2:17553401-17553420 | MS.gene55539:CDS | 30.0% | |
| GCTAGTTAACTAACTACATT+GGG | - | chr6.2:17552324-17552343 | MS.gene55539:intron | 30.0% | |
| GGTTTCCTATGAACTATTAT+CGG | - | chr6.2:17552892-17552911 | MS.gene55539:intron | 30.0% | |
| GTCACATAATATAGTACCTT+TGG | + | chr6.2:17552225-17552244 | None:intergenic | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | - | chr6.2:17553526-17553545 | MS.gene55539:intron | 30.0% | |
| TAACTAACTACATTGGGAAT+TGG | - | chr6.2:17552330-17552349 | MS.gene55539:intron | 30.0% | |
| TAGAACAAGAACCTCTTATA+AGG | + | chr6.2:17552949-17552968 | None:intergenic | 30.0% | |
| TATCAGTTTAACAAAGAGGA+GGG | - | chr6.2:17553574-17553593 | MS.gene55539:intron | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | + | chr6.2:17553523-17553542 | None:intergenic | 30.0% | |
| TGTGTTAATGTGCTATCTTT+AGG | - | chr6.2:17553341-17553360 | MS.gene55539:CDS | 30.0% | |
| TTATCAGTTTAACAAAGAGG+AGG | - | chr6.2:17553573-17553592 | MS.gene55539:intron | 30.0% | |
| TTTATCATTCCTCTAGTGTA+GGG | - | chr6.2:17551903-17551922 | MS.gene55539:intron | 30.0% | |
| ! | TGGTTTTCAATGTTTTCCAA+AGG | - | chr6.2:17552206-17552225 | MS.gene55539:intron | 30.0% |
| ! | TTTTATCATTCCTCTAGTGT+AGG | - | chr6.2:17551902-17551921 | MS.gene55539:intron | 30.0% |
| !! | GGAATTTGTTGGAACAATTT+AGG | + | chr6.2:17551789-17551808 | None:intergenic | 30.0% |
| !!! | TATCTTGTTTTTCCAGTCTT+GGG | - | chr6.2:17553277-17553296 | MS.gene55539:CDS | 30.0% |
| AAAACTCCAAACTAGTGCAA+AGG | + | chr6.2:17552918-17552937 | None:intergenic | 35.0% | |
| AAAGGCCGATAATAGTTCAT+AGG | + | chr6.2:17552900-17552919 | None:intergenic | 35.0% | |
| AAGCAACGGAAATTGTTTGT+CGG | + | chr6.2:17552987-17553006 | None:intergenic | 35.0% | |
| AGCTTGTAAATTTGCAGCAA+TGG | - | chr6.2:17552137-17552156 | MS.gene55539:intron | 35.0% | |
| AGGTTTGGATGATCGATAAT+TGG | + | chr6.2:17552660-17552679 | None:intergenic | 35.0% | |
| ATCTGTTTGACACATGTACA+TGG | - | chr6.2:17552871-17552890 | MS.gene55539:intron | 35.0% | |
| CGCTAGTTAACTAACTACAT+TGG | - | chr6.2:17552323-17552342 | MS.gene55539:intron | 35.0% | |
| GCACATTAACACAGATTTCT+AGG | + | chr6.2:17553334-17553353 | None:intergenic | 35.0% | |
| GGAGAACCATATTGTATATC+AGG | - | chr6.2:17553435-17553454 | MS.gene55539:CDS | 35.0% | |
| GTGCTTTACTTGTGAATAGT+GGG | + | chr6.2:17553064-17553083 | None:intergenic | 35.0% | |
| TACATTGGGAATTGGGATTT+GGG | - | chr6.2:17552338-17552357 | MS.gene55539:intron | 35.0% | |
| TATCGATCATCCAAACCTTT+AGG | - | chr6.2:17552662-17552681 | MS.gene55539:intron | 35.0% | |
| TCAATCTCCTTCGTTGTATT+CGG | + | chr6.2:17551815-17551834 | None:intergenic | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | - | chr6.2:17553543-17553562 | MS.gene55539:intron | 35.0% | |
| TTATCATTCCTCTAGTGTAG+GGG | - | chr6.2:17551904-17551923 | MS.gene55539:intron | 35.0% | |
| ! | AAGATGAAAAGTGTATGGGA+AGG | - | chr6.2:17553616-17553635 | MS.gene55539:intron | 35.0% |
| ! | CGTTATGTGATTAGAAGCAT+TGG | - | chr6.2:17552284-17552303 | MS.gene55539:intron | 35.0% |
| ! | TTCAAACTTACAGATGGGTT+TGG | + | chr6.2:17551846-17551865 | None:intergenic | 35.0% |
| !! | TGATTTTAGGTGATCCTTGA+GGG | - | chr6.2:17552622-17552641 | MS.gene55539:intron | 35.0% |
| !!! | CTATCTTGTTTTTCCAGTCT+TGG | - | chr6.2:17553276-17553295 | MS.gene55539:CDS | 35.0% |
| AATATGTTGGAACCGTGAAG+AGG | - | chr6.2:17553414-17553433 | MS.gene55539:CDS | 40.0% | |
| ACAAAGAGCTGAAGTTGACT+TGG | - | chr6.2:17553035-17553054 | MS.gene55539:intron | 40.0% | |
| AGAGATAAGTGACAGAGAAG+TGG | - | chr6.2:17552418-17552437 | MS.gene55539:intron | 40.0% | |
| AGTTTAATATAGCTGGGGAG+AGG | + | chr6.2:17553143-17553162 | None:intergenic | 40.0% | |
| ATGTCATGGGTGTATGGAAA+GGG | + | chr6.2:17551463-17551482 | None:intergenic | 40.0% | |
| CAAGAACCTCTTATAAGGAC+CGG | + | chr6.2:17552944-17552963 | None:intergenic | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | + | chr6.2:17553429-17553448 | None:intergenic | 40.0% | |
| CGTGCTTTACTTGTGAATAG+TGG | + | chr6.2:17553065-17553084 | None:intergenic | 40.0% | |
| CTACATTGGGAATTGGGATT+TGG | - | chr6.2:17552337-17552356 | MS.gene55539:intron | 40.0% | |
| CTATCTCTCTACCCATTCTT+AGG | - | chr6.2:17551681-17551700 | MS.gene55539:intron | 40.0% | |
| CTTCAAGAATCGGTAAGCAA+CGG | + | chr6.2:17553001-17553020 | None:intergenic | 40.0% | |
| GACTCTTTGCCTTCAAGAAT+CGG | + | chr6.2:17553011-17553030 | None:intergenic | 40.0% | |
| GTATTCGGATCGGAATTTGT+TGG | + | chr6.2:17551800-17551819 | None:intergenic | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | - | chr6.2:17553504-17553523 | MS.gene55539:intron | 40.0% | |
| GTCGAAGAACAGAAAACCAA+AGG | - | chr6.2:17551582-17551601 | MS.gene55539:intron | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | - | chr6.2:17553579-17553598 | MS.gene55539:intron | 40.0% | |
| GTTTAATATAGCTGGGGAGA+GGG | + | chr6.2:17553142-17553161 | None:intergenic | 40.0% | |
| TCAACTTCAGCTCTTTGTTC+AGG | + | chr6.2:17553033-17553052 | None:intergenic | 40.0% | |
| TCACAAGTAAAGCACGTTCT+TGG | - | chr6.2:17553069-17553088 | MS.gene55539:intron | 40.0% | |
| TCTGTCTCTCTCTCTATTCA+CGG | - | chr6.2:17551560-17551579 | MS.gene55539:intron | 40.0% | |
| TTTAATATAGCTGGGGAGAG+GGG | + | chr6.2:17553141-17553160 | None:intergenic | 40.0% | |
| TTTGTCGGTCAAACTGCAAA+AGG | + | chr6.2:17552972-17552991 | None:intergenic | 40.0% | |
| ! | ATTTTTCACCCCTACACTAG+AGG | + | chr6.2:17551915-17551934 | None:intergenic | 40.0% |
| !! | ACTAGTTTGGAGTTTTCCTC+CGG | - | chr6.2:17552922-17552941 | MS.gene55539:intron | 40.0% |
| !! | CTGATTTTAGGTGATCCTTG+AGG | - | chr6.2:17552621-17552640 | MS.gene55539:intron | 40.0% |
| AATGCCATGTCATGGGTGTA+TGG | + | chr6.2:17551469-17551488 | None:intergenic | 45.0% | |
| AGAAATCCGTCGCCTAAGAA+TGG | + | chr6.2:17551696-17551715 | None:intergenic | 45.0% | |
| AGTGACAGAGAAGTGGTAGT+TGG | - | chr6.2:17552425-17552444 | MS.gene55539:intron | 45.0% | |
| CATGTCATGGGTGTATGGAA+AGG | + | chr6.2:17551464-17551483 | None:intergenic | 45.0% | |
| CTCCTTCGTTGTATTCGGAT+CGG | + | chr6.2:17551810-17551829 | None:intergenic | 45.0% | |
| CTCTCTCCAATTATCTCCGA+CGG | - | chr6.2:17551630-17551649 | MS.gene55539:intron | 45.0% | |
| CTTTCCATACACCCATGACA+TGG | - | chr6.2:17551462-17551481 | MS.gene55539:CDS | 45.0% | |
| GAAATCCGTCGCCTAAGAAT+GGG | + | chr6.2:17551695-17551714 | None:intergenic | 45.0% | |
| GAGATAATTGGAGAGAGACC+TGG | + | chr6.2:17551627-17551646 | None:intergenic | 45.0% | |
| GATTTGGGTGTCTTTGTGGA+GGG | - | chr6.2:17552353-17552372 | MS.gene55539:intron | 45.0% | |
| GTGACAGAGAAGTGGTAGTT+GGG | - | chr6.2:17552426-17552445 | MS.gene55539:intron | 45.0% | |
| TATCGGCCTTTGCACTAGTT+TGG | - | chr6.2:17552909-17552928 | MS.gene55539:intron | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | - | chr6.2:17553391-17553410 | MS.gene55539:CDS | 45.0% | |
| TCCTGATAGAGTTCTCTCCA+TGG | - | chr6.2:17552161-17552180 | MS.gene55539:intron | 45.0% | |
| TTCCGATCCGAATACAACGA+AGG | - | chr6.2:17551805-17551824 | MS.gene55539:intron | 45.0% | |
| TTGGGATTTGGGTGTCTTTG+TGG | - | chr6.2:17552349-17552368 | MS.gene55539:intron | 45.0% | |
| TTTCCTCCGGTCCTTATAAG+AGG | - | chr6.2:17552935-17552954 | MS.gene55539:intron | 45.0% | |
| ! | GAAAGGGTGTACCAAAAGAG+TGG | + | chr6.2:17551447-17551466 | None:intergenic | 45.0% |
| !! | CGTTGCTTACCGATTCTTGA+AGG | - | chr6.2:17552999-17553018 | MS.gene55539:intron | 45.0% |
| !! | TTTTAGGTGATCCTTGAGGG+TGG | - | chr6.2:17552625-17552644 | MS.gene55539:intron | 45.0% |
| AAAGTCACGAATCGCGATCC+GGG | - | chr6.2:17552514-17552533 | MS.gene55539:intron | 50.0% | |
| ACCACCTGTTGCATTGAGCA+AGG | + | chr6.2:17552187-17552206 | None:intergenic | 50.0% | |
| ATGGAGAGATCCTTCGCAGA+AGG | + | chr6.2:17551734-17551753 | None:intergenic | 50.0% | |
| ATGGAGCCGTCGGAGATAAT+TGG | + | chr6.2:17551639-17551658 | None:intergenic | 50.0% | |
| CAAAGTCACGAATCGCGATC+CGG | - | chr6.2:17552513-17552532 | MS.gene55539:intron | 50.0% | |
| CTCTACCCATTCTTAGGCGA+CGG | - | chr6.2:17551687-17551706 | MS.gene55539:intron | 50.0% | |
| CTTCAGAGTAGACCCAAGAC+TGG | + | chr6.2:17553292-17553311 | None:intergenic | 50.0% | |
| GAACCTCTTATAAGGACCGG+AGG | + | chr6.2:17552941-17552960 | None:intergenic | 50.0% | |
| GATCGCGATTCGTGACTTTG+TGG | + | chr6.2:17552513-17552532 | None:intergenic | 50.0% | |
| GCAGAAGGTTGAGTGAGAGA+TGG | + | chr6.2:17551719-17551738 | None:intergenic | 50.0% | |
| GCCATGGAGAGAACTCTATC+AGG | + | chr6.2:17552165-17552184 | None:intergenic | 50.0% | |
| GCGATTCGTGACTTTGTGGA+GGG | + | chr6.2:17552509-17552528 | None:intergenic | 50.0% | |
| GGATTTGGGTGTCTTTGTGG+AGG | - | chr6.2:17552352-17552371 | MS.gene55539:intron | 50.0% | |
| TCTCACTCAACCTTCTGCGA+AGG | - | chr6.2:17551721-17551740 | MS.gene55539:intron | 50.0% | |
| TGTTGCATTGAGCAAGGCCA+TGG | + | chr6.2:17552181-17552200 | None:intergenic | 50.0% | |
| TTGCTCAATGCAACAGGTGG+TGG | - | chr6.2:17552186-17552205 | MS.gene55539:intron | 50.0% | |
| ! | ATGGCCTTGCTCAATGCAAC+AGG | - | chr6.2:17552180-17552199 | MS.gene55539:intron | 50.0% |
| AGATAGAGCCGTCGGAGAGA+GGG | + | chr6.2:17551667-17551686 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGAGGGGTTA+GGG | + | chr6.2:17553135-17553154 | None:intergenic | 55.0% | |
| CATCTCAACCCTCTCTCCGA+CGG | - | chr6.2:17551656-17551675 | MS.gene55539:intron | 55.0% | |
| CGCGATTCGTGACTTTGTGG+AGG | + | chr6.2:17552510-17552529 | None:intergenic | 55.0% | |
| CGTGGAGAGAGTAGCACCTT+TGG | + | chr6.2:17551601-17551620 | None:intergenic | 55.0% | |
| GCCTTGCTCAATGCAACAGG+TGG | - | chr6.2:17552183-17552202 | MS.gene55539:intron | 55.0% | |
| GGACTCAATTGCCACCCTCA+AGG | + | chr6.2:17552639-17552658 | None:intergenic | 55.0% | |
| GGGTAGAGAGATAGAGCCGT+CGG | + | chr6.2:17551675-17551694 | None:intergenic | 55.0% | |
| TATAGCTGGGGAGAGGGGTT+AGG | + | chr6.2:17553136-17553155 | None:intergenic | 55.0% | |
| TGTGACTAGCAAGCACCACC+CGG | + | chr6.2:17552535-17552554 | None:intergenic | 55.0% | |
| ACGCCATCGCAGAGGGTTGA+GGG | + | chr6.2:17551761-17551780 | None:intergenic | 60.0% | |
| CGTCGGAGAGAGGGTTGAGA+TGG | + | chr6.2:17551658-17551677 | None:intergenic | 60.0% | |
| GAGATAGAGCCGTCGGAGAG+AGG | + | chr6.2:17551668-17551687 | None:intergenic | 60.0% | |
| GAGGGTTGAGATGGAGCCGT+CGG | + | chr6.2:17551649-17551668 | None:intergenic | 60.0% | |
| GCAGAGGGTTGAGGGAGAGA+TGG | + | chr6.2:17551753-17551772 | None:intergenic | 60.0% | |
| TCTCCCTCAACCCTCTGCGA+TGG | - | chr6.2:17551755-17551774 | MS.gene55539:intron | 60.0% | |
| AGGGAGAGACGCCATCGCAG+AGG | + | chr6.2:17551769-17551788 | None:intergenic | 65.0% | |
| GACGCCATCGCAGAGGGTTG+AGG | + | chr6.2:17551762-17551781 | None:intergenic | 65.0% | |
| GCTACTCTCTCCACGCGACC+AGG | - | chr6.2:17551606-17551625 | MS.gene55539:intron | 65.0% | |
| GGGAGAGACGCCATCGCAGA+GGG | + | chr6.2:17551768-17551787 | None:intergenic | 65.0% | |
| GTCACGAATCGCGATCCGGG+TGG | - | chr6.2:17552517-17552536 | MS.gene55539:intron | 65.0% | |
| TGGAGAGAGACCTGGTCGCG+TGG | + | chr6.2:17551619-17551638 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 17551439 | 17553645 | 17551439 | ID=MS.gene55539 |
| chr6.2 | mRNA | 17551439 | 17553645 | 17551439 | ID=MS.gene55539.t1;Parent=MS.gene55539 |
| chr6.2 | exon | 17553630 | 17553645 | 17553630 | ID=MS.gene55539.t1.exon1;Parent=MS.gene55539.t1 |
| chr6.2 | CDS | 17553630 | 17553645 | 17553630 | ID=cds.MS.gene55539.t1;Parent=MS.gene55539.t1 |
| chr6.2 | exon | 17553230 | 17553495 | 17553230 | ID=MS.gene55539.t1.exon2;Parent=MS.gene55539.t1 |
| chr6.2 | CDS | 17553230 | 17553495 | 17553230 | ID=cds.MS.gene55539.t1;Parent=MS.gene55539.t1 |
| chr6.2 | exon | 17552010 | 17552105 | 17552010 | ID=MS.gene55539.t1.exon3;Parent=MS.gene55539.t1 |
| chr6.2 | CDS | 17552010 | 17552105 | 17552010 | ID=cds.MS.gene55539.t1;Parent=MS.gene55539.t1 |
| chr6.2 | exon | 17551439 | 17551558 | 17551439 | ID=MS.gene55539.t1.exon4;Parent=MS.gene55539.t1 |
| chr6.2 | CDS | 17551439 | 17551558 | 17551439 | ID=cds.MS.gene55539.t1;Parent=MS.gene55539.t1 |
| Gene Sequence |
| Protein sequence |
