Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60853.t1 | XP_003591772.1 | 97.4 | 425 | 11 | 0 | 1 | 425 | 1 | 425 | 2.40E-226 | 794.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60853.t1 | Q5SR56 | 25.3 | 395 | 262 | 10 | 2 | 388 | 35 | 404 | 1.9e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60853.t1 | G7I365 | 97.4 | 425 | 11 | 0 | 1 | 425 | 1 | 425 | 1.7e-226 | 794.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene60853 | -0.821293 | 4.36E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene60853 | -0.810842 | 9.43E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene60853 | -0.818754 | 1.66E-52 | -1.69E-46 |
| MS.gene049274 | MS.gene60853 | 0.820845 | 5.53E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene60853 | -0.810549 | 1.09E-50 | -1.69E-46 |
| MS.gene049298 | MS.gene60853 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene049320 | MS.gene60853 | -0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene60853 | 0.824019 | 1.01E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene60853 | -0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene60853 | 0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene050082 | MS.gene60853 | 0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene60853 | -0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene60853 | -0.815273 | 1.01E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene60853 | -0.816953 | 4.24E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene60853 | -0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene60853 | -0.808082 | 3.69E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene60853 | 0.841824 | 3.76E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene60853 | -0.865437 | 5.91E-65 | -1.69E-46 |
| MS.gene050504 | MS.gene60853 | -0.829819 | 4.16E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene60853 | -0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene60853 | -0.842128 | 3.12E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene60853 | -0.828445 | 8.96E-55 | -1.69E-46 |
| MS.gene05079 | MS.gene60853 | 0.83054 | 2.77E-55 | -1.69E-46 |
| MS.gene050809 | MS.gene60853 | 0.820789 | 5.70E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene60853 | -0.801584 | 8.40E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene60853 | -0.836574 | 8.64E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene60853 | -0.837912 | 3.93E-57 | -1.69E-46 |
| MS.gene050904 | MS.gene60853 | -0.816327 | 5.86E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene60853 | 0.815119 | 1.09E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene60853 | 0.829 | 6.57E-55 | -1.69E-46 |
| MS.gene051268 | MS.gene60853 | -0.827619 | 1.42E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene60853 | -0.829747 | 4.33E-55 | -1.69E-46 |
| MS.gene051632 | MS.gene60853 | 0.800266 | 1.56E-48 | -1.69E-46 |
| MS.gene051651 | MS.gene60853 | 0.830426 | 2.96E-55 | -1.69E-46 |
| MS.gene051838 | MS.gene60853 | -0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene051863 | MS.gene60853 | 0.871402 | 7.02E-67 | -1.69E-46 |
| MS.gene051874 | MS.gene60853 | -0.822601 | 2.17E-53 | -1.69E-46 |
| MS.gene052129 | MS.gene60853 | 0.847689 | 9.87E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene60853 | -0.808623 | 2.83E-50 | -1.69E-46 |
| MS.gene052805 | MS.gene60853 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene052872 | MS.gene60853 | -0.81596 | 7.07E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene60853 | -0.8004 | 1.47E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene60853 | -0.803893 | 2.80E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene60853 | 0.827763 | 1.31E-54 | -1.69E-46 |
| MS.gene053421 | MS.gene60853 | 0.819158 | 1.35E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene60853 | -0.828233 | 1.01E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene60853 | -0.81538 | 9.52E-52 | -1.69E-46 |
| MS.gene053776 | MS.gene60853 | 0.84006 | 1.09E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene60853 | -0.814573 | 1.44E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene60853 | -0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene053920 | MS.gene60853 | 0.822232 | 2.65E-53 | -1.69E-46 |
| MS.gene054290 | MS.gene60853 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene60853 | -0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene60853 | -0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene60853 | 0.867518 | 1.29E-65 | -1.69E-46 |
| MS.gene054707 | MS.gene60853 | 0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene60853 | -0.812792 | 3.55E-51 | -1.69E-46 |
| MS.gene054941 | MS.gene60853 | 0.824119 | 9.59E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene60853 | -0.818578 | 1.82E-52 | -1.69E-46 |
| MS.gene054965 | MS.gene60853 | 0.825082 | 5.69E-54 | -1.69E-46 |
| MS.gene055158 | MS.gene60853 | 0.816287 | 5.98E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene60853 | -0.805339 | 1.40E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene60853 | -0.833769 | 4.41E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene60853 | -0.831421 | 1.69E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene60853 | -0.833295 | 5.79E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene60853 | -0.82361 | 1.26E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene60853 | -0.836501 | 9.02E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene60853 | -0.830648 | 2.61E-55 | -1.69E-46 |
| MS.gene056224 | MS.gene60853 | 0.81851 | 1.89E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene60853 | -0.866592 | 2.55E-65 | -1.69E-46 |
| MS.gene056504 | MS.gene60853 | -0.841329 | 5.08E-58 | -1.69E-46 |
| MS.gene056618 | MS.gene60853 | 0.831947 | 1.25E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene60853 | -0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene056688 | MS.gene60853 | 0.809782 | 1.60E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene60853 | -0.821967 | 3.05E-53 | -1.69E-46 |
| MS.gene056697 | MS.gene60853 | 0.810981 | 8.80E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene60853 | 0.849427 | 3.26E-60 | -1.69E-46 |
| MS.gene056857 | MS.gene60853 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene05753 | MS.gene60853 | -0.807347 | 5.28E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene60853 | 0.812432 | 4.25E-51 | -1.69E-46 |
| MS.gene057549 | MS.gene60853 | 0.81399 | 1.93E-51 | -1.69E-46 |
| MS.gene057717 | MS.gene60853 | 0.833992 | 3.88E-56 | -1.69E-46 |
| MS.gene057857 | MS.gene60853 | -0.828661 | 7.94E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene60853 | -0.802386 | 5.75E-49 | -1.69E-46 |
| MS.gene058067 | MS.gene60853 | 0.81128 | 7.57E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene60853 | 0.814561 | 1.45E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene60853 | 0.833988 | 3.89E-56 | -1.69E-46 |
| MS.gene058117 | MS.gene60853 | 0.802717 | 4.91E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene60853 | -0.804732 | 1.88E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene60853 | 0.810667 | 1.03E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene60853 | 0.811496 | 6.80E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene60853 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene60853 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene058334 | MS.gene60853 | 0.823351 | 1.45E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene60853 | -0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene058382 | MS.gene60853 | 0.815371 | 9.57E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene60853 | -0.810876 | 9.27E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene60853 | -0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene60853 | -0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene60853 | -0.823605 | 1.27E-53 | -1.69E-46 |
| MS.gene059045 | MS.gene60853 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene60853 | 0.841092 | 5.86E-58 | -1.69E-46 |
| MS.gene059526 | MS.gene60853 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene60853 | -0.822135 | 2.79E-53 | -1.69E-46 |
| MS.gene059699 | MS.gene60853 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene60853 | 0.813609 | 2.35E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene60853 | -0.832092 | 1.15E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene60853 | -0.836461 | 9.23E-57 | -1.69E-46 |
| MS.gene060405 | MS.gene60853 | 0.862448 | 5.03E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene60853 | -0.833178 | 6.19E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene60853 | -0.816091 | 6.61E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene60853 | -0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene60853 | 0.825663 | 4.15E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene60853 | -0.834381 | 3.10E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene60853 | 0.801898 | 7.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60853.t1 | MTR_1g092880 | 95.642 | 436 | 16 | 1 | 1 | 436 | 1 | 433 | 0.0 | 837 |
| MS.gene60853.t1 | MTR_1g092880 | 96.190 | 420 | 15 | 1 | 1 | 420 | 1 | 419 | 0.0 | 811 |
| MS.gene60853.t1 | MTR_1g092870 | 86.667 | 435 | 54 | 1 | 1 | 435 | 1 | 431 | 0.0 | 766 |
| MS.gene60853.t1 | MTR_1g092880 | 98.182 | 385 | 7 | 0 | 1 | 385 | 1 | 385 | 0.0 | 761 |
| MS.gene60853.t1 | MTR_1g112980 | 36.643 | 423 | 258 | 3 | 10 | 424 | 4 | 424 | 8.98e-92 | 285 |
| MS.gene60853.t1 | MTR_3g114810 | 36.667 | 420 | 251 | 2 | 13 | 419 | 9 | 426 | 2.18e-91 | 284 |
| MS.gene60853.t1 | MTR_1g112980 | 36.313 | 358 | 218 | 3 | 10 | 359 | 4 | 359 | 2.51e-73 | 235 |
| MS.gene60853.t1 | MTR_1g112980 | 36.919 | 344 | 207 | 3 | 10 | 345 | 4 | 345 | 4.16e-71 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60853.t1 | AT5G42210 | 36.493 | 422 | 258 | 2 | 13 | 424 | 10 | 431 | 1.88e-90 | 282 |
| MS.gene60853.t1 | AT5G42210 | 36.031 | 383 | 235 | 2 | 13 | 385 | 10 | 392 | 2.90e-80 | 254 |
| MS.gene60853.t1 | AT2G16980 | 33.846 | 455 | 265 | 4 | 8 | 426 | 4 | 458 | 1.29e-77 | 249 |
| MS.gene60853.t1 | AT2G16980 | 33.846 | 455 | 265 | 4 | 8 | 426 | 19 | 473 | 1.91e-77 | 249 |
| MS.gene60853.t1 | AT2G16980 | 35.104 | 433 | 252 | 4 | 8 | 415 | 19 | 447 | 1.22e-75 | 245 |
| MS.gene60853.t1 | AT2G16970 | 32.816 | 451 | 277 | 4 | 8 | 433 | 4 | 453 | 6.57e-75 | 242 |
| MS.gene60853.t1 | AT2G16990 | 32.000 | 425 | 264 | 3 | 13 | 412 | 8 | 432 | 2.75e-68 | 224 |
| MS.gene60853.t1 | AT2G16980 | 33.416 | 404 | 244 | 3 | 8 | 386 | 19 | 422 | 1.75e-66 | 219 |
| MS.gene60853.t1 | AT2G16970 | 31.667 | 420 | 262 | 3 | 8 | 402 | 4 | 423 | 1.02e-65 | 218 |
| MS.gene60853.t1 | AT2G16990 | 31.463 | 410 | 259 | 2 | 13 | 400 | 8 | 417 | 1.42e-65 | 218 |
| MS.gene60853.t1 | AT2G16990 | 31.463 | 410 | 259 | 2 | 13 | 400 | 8 | 417 | 1.42e-65 | 218 |
| MS.gene60853.t1 | AT2G16970 | 32.178 | 404 | 249 | 3 | 8 | 386 | 4 | 407 | 8.21e-65 | 214 |
| MS.gene60853.t1 | AT2G16970 | 32.178 | 404 | 249 | 3 | 8 | 386 | 4 | 407 | 8.21e-65 | 214 |
| MS.gene60853.t1 | AT2G16980 | 31.250 | 432 | 244 | 4 | 8 | 386 | 19 | 450 | 3.36e-61 | 206 |
| MS.gene60853.t1 | AT2G16990 | 30.479 | 397 | 254 | 2 | 13 | 387 | 8 | 404 | 3.33e-60 | 202 |
| MS.gene60853.t1 | AT2G16990 | 30.479 | 397 | 254 | 2 | 13 | 387 | 8 | 404 | 3.33e-60 | 202 |
| MS.gene60853.t1 | AT2G16970 | 31.300 | 377 | 234 | 3 | 8 | 359 | 4 | 380 | 9.09e-56 | 190 |
| MS.gene60853.t1 | AT2G16990 | 30.488 | 410 | 236 | 3 | 13 | 400 | 8 | 390 | 2.31e-55 | 190 |
| MS.gene60853.t1 | AT2G16970 | 32.184 | 348 | 211 | 3 | 8 | 330 | 4 | 351 | 5.09e-54 | 185 |
| MS.gene60853.t1 | AT2G16970 | 32.184 | 348 | 211 | 3 | 8 | 330 | 4 | 351 | 5.15e-54 | 185 |
| MS.gene60853.t1 | AT2G16980 | 34.906 | 318 | 179 | 3 | 122 | 415 | 1 | 314 | 1.07e-46 | 165 |
| MS.gene60853.t1 | AT2G16990 | 28.994 | 338 | 218 | 2 | 13 | 328 | 8 | 345 | 5.13e-46 | 164 |
| MS.gene60853.t1 | AT2G16990 | 28.994 | 338 | 218 | 2 | 13 | 328 | 8 | 345 | 5.13e-46 | 164 |
| MS.gene60853.t1 | AT2G16970 | 37.989 | 179 | 110 | 1 | 255 | 433 | 169 | 346 | 3.13e-31 | 123 |
| MS.gene60853.t1 | AT2G16970 | 34.706 | 170 | 110 | 1 | 8 | 176 | 4 | 173 | 4.82e-27 | 111 |
Find 85 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGCAGGCTTGGCTTTC+TGG | 0.046732 | 1.4:-73169123 | MS.gene60853:intron |
| TCCAAAGCCATTTACATTAA+TGG | 0.151907 | 1.4:-73171093 | MS.gene60853:CDS |
| TTGAAGACCATTAATGTAAA+TGG | 0.184689 | 1.4:+73171086 | None:intergenic |
| TCATTACTTGAAGGATTATT+AGG | 0.221635 | 1.4:+73167941 | None:intergenic |
| AACAAAAGGGCAGCAGTATT+TGG | 0.253401 | 1.4:-73170303 | MS.gene60853:CDS |
| GATGATGGTACTTCCACTTT+TGG | 0.276695 | 1.4:-73170954 | MS.gene60853:CDS |
| CCAAATGAGGCACTTAAATA+TGG | 0.298481 | 1.4:+73168820 | None:intergenic |
| GAAATTACCAAAAGGAAATA+TGG | 0.304389 | 1.4:+73170874 | None:intergenic |
| ACCATTAATGTAAATGGCTT+TGG | 0.317187 | 1.4:+73171092 | None:intergenic |
| TCCACCACCATATTTCCTTT+TGG | 0.332298 | 1.4:-73170881 | MS.gene60853:intron |
| AGGAAGAATTGCATATAAAC+TGG | 0.362320 | 1.4:+73170064 | None:intergenic |
| TGGATTAGCATGGGCACCTT+GGG | 0.369833 | 1.4:-73169103 | MS.gene60853:intron |
| TACTTCCACTAAGCATTCAT+TGG | 0.375771 | 1.4:-73171191 | MS.gene60853:CDS |
| CCGCGGAAATAGTAATCTTC+AGG | 0.389670 | 1.4:-73169940 | MS.gene60853:intron |
| TTTCTGCTTCACATGTTGTT+GGG | 0.389841 | 1.4:-73170263 | MS.gene60853:CDS |
| CTTCTGATGATGGTCGGAAT+TGG | 0.392333 | 1.4:-73169556 | MS.gene60853:CDS |
| GCAGTATTTGGTTGGATCAC+TGG | 0.394856 | 1.4:-73170291 | MS.gene60853:CDS |
| CCATATTTAAGTGCCTCATT+TGG | 0.394933 | 1.4:-73168820 | MS.gene60853:CDS |
| TCCTCATAGATTTATATCTT+CGG | 0.396596 | 1.4:+73169966 | None:intergenic |
| TTGGTGTAGCTTTACTTGCC+TGG | 0.419101 | 1.4:-73170533 | MS.gene60853:intron |
| CTGGATTAGCATGGGCACCT+TGG | 0.419174 | 1.4:-73169104 | MS.gene60853:CDS |
| CATCACCAACACTTGCTGTC+TGG | 0.422968 | 1.4:+73167283 | None:intergenic |
| GGAAGTAACAAGTGGAATAA+TGG | 0.425167 | 1.4:+73171207 | None:intergenic |
| GCTAAAACCTTTGCATTCAA+AGG | 0.425492 | 1.4:+73168122 | None:intergenic |
| GTCAAAGGACTCATTACAAT+TGG | 0.436941 | 1.4:+73168269 | None:intergenic |
| GCCTAACTCTTGGATATTTG+TGG | 0.444573 | 1.4:+73170018 | None:intergenic |
| AGCATCAAGCTCAACCAATC+AGG | 0.446005 | 1.4:-73168466 | MS.gene60853:intron |
| CCAATACTTAATCCATTGGT+TGG | 0.448307 | 1.4:-73169264 | MS.gene60853:CDS |
| GCAATCCAATGAATGCTTAG+TGG | 0.451192 | 1.4:+73171186 | None:intergenic |
| AAATTCCTCAGATTGATTCC+AGG | 0.451558 | 1.4:+73170515 | None:intergenic |
| CCAACCAATGGATTAAGTAT+TGG | 0.453351 | 1.4:+73169264 | None:intergenic |
| ACTTCCAATACTTAATCCAT+TGG | 0.457054 | 1.4:-73169268 | MS.gene60853:CDS |
| CTTGGCTTTCTGGATTAGCA+TGG | 0.462444 | 1.4:-73169113 | MS.gene60853:CDS |
| ATGTTGTCAATGAAAACAAA+AGG | 0.465641 | 1.4:-73170317 | MS.gene60853:CDS |
| CCTAACTCTTGGATATTTGT+GGG | 0.469016 | 1.4:+73170019 | None:intergenic |
| ATATGCTATTGATGCAAGTA+AGG | 0.470324 | 1.4:+73169218 | None:intergenic |
| CTAAAACCTTTGCATTCAAA+GGG | 0.470696 | 1.4:+73168123 | None:intergenic |
| CCCACAAATATCCAAGAGTT+AGG | 0.475946 | 1.4:-73170019 | MS.gene60853:CDS |
| ACATGTTGTTGGGAACGTCT+TGG | 0.481757 | 1.4:-73170253 | MS.gene60853:CDS |
| TAGAGCAGAAGCCTAACTCT+TGG | 0.495111 | 1.4:+73170008 | None:intergenic |
| GACCATGTTCATCTGAAAGC+TGG | 0.496936 | 1.4:+73170930 | None:intergenic |
| GTTCTCAGAACTTCTGATGA+TGG | 0.496970 | 1.4:-73169566 | MS.gene60853:CDS |
| TTGGCTTTCTGGATTAGCAT+GGG | 0.498516 | 1.4:-73169112 | MS.gene60853:CDS |
| AATTGTGCGAAGCACATAGT+AGG | 0.502554 | 1.4:+73170485 | None:intergenic |
| CTGCATCTCTGTCGCGTATG+TGG | 0.504768 | 1.4:-73170433 | MS.gene60853:intron |
| CAGTCCTACATTAAGAGGCA+TGG | 0.507024 | 1.4:-73169801 | MS.gene60853:CDS |
| AGGAAATATGGTGGTGGACA+TGG | 0.507063 | 1.4:+73170886 | None:intergenic |
| AAAAGGACAACAAACCTGAT+TGG | 0.509443 | 1.4:+73168452 | None:intergenic |
| AAAGGGCAGCAGTATTTGGT+TGG | 0.512553 | 1.4:-73170299 | MS.gene60853:CDS |
| TCTGAAAGCTGGCCCAAAAG+TGG | 0.517271 | 1.4:+73170941 | None:intergenic |
| GTATTCTACTTACAAGTCAA+AGG | 0.529313 | 1.4:+73168254 | None:intergenic |
| AGAGATCGAGATAGAAATCA+TGG | 0.535115 | 1.4:-73167359 | MS.gene60853:CDS |
| ATCACTTTCTCTCCAACCAA+TGG | 0.535617 | 1.4:+73169252 | None:intergenic |
| GACATAGATAATGCCAAATG+AGG | 0.541816 | 1.4:+73168807 | None:intergenic |
| TGATATTGTCGGCGAGATTG+TGG | 0.545713 | 1.4:-73167306 | MS.gene60853:CDS |
| ATTTCGTATATAATCAGTAA+AGG | 0.551876 | 1.4:-73170465 | MS.gene60853:CDS |
| CGGTGATGAGATGATATTGT+CGG | 0.558133 | 1.4:-73167317 | MS.gene60853:CDS |
| GACATGGTAACAAGGAGTAA+AGG | 0.560542 | 1.4:+73170902 | None:intergenic |
| TGTTGTCAATGAAAACAAAA+GGG | 0.564808 | 1.4:-73170316 | MS.gene60853:CDS |
| AGAAACATGTCGTGGTGGAG+TGG | 0.565655 | 1.4:-73171246 | None:intergenic |
| AGAGCCATGCCTCTTAATGT+AGG | 0.570142 | 1.4:+73169797 | None:intergenic |
| TTGAAAACATACCAGCAAAA+CGG | 0.572492 | 1.4:+73169733 | None:intergenic |
| GCCGAAGATATAAATCTATG+AGG | 0.575578 | 1.4:-73169967 | MS.gene60853:CDS |
| TTGGAGCAAGATGATTGTTG+AGG | 0.583697 | 1.4:+73171111 | None:intergenic |
| CGAGATAGAAATCATGGCCA+AGG | 0.585107 | 1.4:-73167353 | MS.gene60853:CDS |
| ACCGTCGCTTCTCTCAACCT+TGG | 0.591855 | 1.4:+73167336 | None:intergenic |
| TCAGAACTTCTGATGATGGT+CGG | 0.592201 | 1.4:-73169562 | MS.gene60853:CDS |
| GATGCTCCCTTTGAATGCAA+AGG | 0.600708 | 1.4:-73168129 | MS.gene60853:CDS |
| ACCAAAAGGAAATATGGTGG+TGG | 0.601761 | 1.4:+73170880 | None:intergenic |
| GCCAAGGTTGAGAGAAGCGA+CGG | 0.612655 | 1.4:-73167337 | MS.gene60853:CDS |
| TGCTTAGTGGAAGTAACAAG+TGG | 0.613388 | 1.4:+73171199 | None:intergenic |
| TGGTGGTGGACATGGTAACA+AGG | 0.613830 | 1.4:+73170894 | None:intergenic |
| TACTCACAGCTGGTTTCACA+AGG | 0.613962 | 1.4:+73168785 | None:intergenic |
| GGCCAGCTTTCAGATGAACA+TGG | 0.618022 | 1.4:-73170932 | MS.gene60853:CDS |
| ACTTGCCTGGAATCAATCTG+AGG | 0.623532 | 1.4:-73170520 | MS.gene60853:CDS |
| TATATGTGCATCTGTATGCA+TGG | 0.633250 | 1.4:-73168097 | MS.gene60853:intron |
| CCTGAAGATTACTATTTCCG+CGG | 0.635434 | 1.4:+73169940 | None:intergenic |
| ATCTCAGAAACATGTCGTGG+TGG | 0.656593 | 1.4:-73171251 | None:intergenic |
| ATTACCAAAAGGAAATATGG+TGG | 0.656790 | 1.4:+73170877 | None:intergenic |
| CAGACAGCAAGTGTTGGTGA+TGG | 0.672618 | 1.4:-73167282 | None:intergenic |
| TAAATCTATGAGGAATGCCG+CGG | 0.674285 | 1.4:-73169957 | MS.gene60853:CDS |
| TGTGGCCAGACAGCAAGTGT+TGG | 0.675376 | 1.4:-73167288 | MS.gene60853:CDS |
| ATAATCTCAGAAACATGTCG+TGG | 0.689275 | 1.4:-73171254 | None:intergenic |
| AAAACATACCAGCAAAACGG+TGG | 0.718416 | 1.4:+73169736 | None:intergenic |
| TTGTTGAGGACATAAAGCAG+TGG | 0.744421 | 1.4:+73171125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTTTTAATAAAAATG+GGG | - | chr1.4:73170936-73170955 | MS.gene60853:CDS | 10.0% |
| !!! | TTTTTCTTAATCTAATATAT+TGG | - | chr1.4:73167676-73167695 | MS.gene60853:intron | 10.0% |
| !! | ATAAAGAAAATCATATGAAA+TGG | + | chr1.4:73170153-73170172 | None:intergenic | 15.0% |
| !! | TAAAATAAAAATGAGAAAGT+TGG | + | chr1.4:73167501-73167520 | None:intergenic | 15.0% |
| !!! | AAATTTTGAAAAGAAAAAGA+TGG | - | chr1.4:73168138-73168157 | MS.gene60853:CDS | 15.0% |
| !!! | ATTTAATTTGTATACACTAT+CGG | + | chr1.4:73169938-73169957 | None:intergenic | 15.0% |
| !!! | CAAAACTATTGATTTTTTAA+TGG | + | chr1.4:73170899-73170918 | None:intergenic | 15.0% |
| !!! | TGAAAAACATTACATTTTTT+AGG | + | chr1.4:73168706-73168725 | None:intergenic | 15.0% |
| !!! | TTATTTTTATACTTCTTGTT+AGG | - | chr1.4:73168378-73168397 | MS.gene60853:intron | 15.0% |
| !!! | TTTTCTTTATCTGAATTTTA+TGG | - | chr1.4:73170163-73170182 | MS.gene60853:intron | 15.0% |
| !! | AAGAAATTAATTGCAATATC+AGG | + | chr1.4:73170010-73170029 | None:intergenic | 20.0% |
| !! | AATAGTTACAATCATTAGTT+TGG | + | chr1.4:73169051-73169070 | None:intergenic | 20.0% |
| !! | AGAATATAATACCAAAAAAG+TGG | + | chr1.4:73169848-73169867 | None:intergenic | 20.0% |
| !! | AGTTATTATATTGTAGCATA+AGG | + | chr1.4:73170344-73170363 | None:intergenic | 20.0% |
| !! | ATATTGAAAATTCTTGAAAC+TGG | - | chr1.4:73170864-73170883 | MS.gene60853:intron | 20.0% |
| !! | ATTGACGAATTCAATTAAAT+CGG | + | chr1.4:73168818-73168837 | None:intergenic | 20.0% |
| !! | ATTTCGTATATAATCAGTAA+AGG | - | chr1.4:73168060-73168079 | MS.gene60853:intron | 20.0% |
| !! | GAAAAATTGAAATTACCAAA+AGG | + | chr1.4:73167662-73167681 | None:intergenic | 20.0% |
| !! | GTGTCAAAATTAATGTAAAA+TGG | + | chr1.4:73170322-73170341 | None:intergenic | 20.0% |
| !! | TACAAATTTACATGCTTATA+TGG | - | chr1.4:73169613-73169632 | MS.gene60853:intron | 20.0% |
| !! | TAGGTTATGAATCTTAATTA+TGG | - | chr1.4:73168397-73168416 | MS.gene60853:intron | 20.0% |
| !!! | AAAATTAATGGACTTTTCAA+TGG | - | chr1.4:73171038-73171057 | MS.gene60853:intron | 20.0% |
| !!! | TATGGTGTAATTTTATTGTA+GGG | - | chr1.4:73170181-73170200 | MS.gene60853:intron | 20.0% |
| !!! | TTATGGTGTAATTTTATTGT+AGG | - | chr1.4:73170180-73170199 | MS.gene60853:intron | 20.0% |
| !!! | TTTTGTGATTCTTCTTTATA+AGG | - | chr1.4:73169096-73169115 | MS.gene60853:intron | 20.0% |
| ! | AAAAAGCTTACTTTGAATAC+AGG | + | chr1.4:73169525-73169544 | None:intergenic | 25.0% |
| ! | AAGAGCTTAGATATGATATT+AGG | + | chr1.4:73169369-73169388 | None:intergenic | 25.0% |
| ! | AATGTTTGATAAGCTGATTA+TGG | - | chr1.4:73169179-73169198 | MS.gene60853:intron | 25.0% |
| ! | ATGCCATATATTCATATAGT+TGG | - | chr1.4:73170745-73170764 | MS.gene60853:intron | 25.0% |
| ! | ATGTTGTCAATGAAAACAAA+AGG | - | chr1.4:73168208-73168227 | MS.gene60853:intron | 25.0% |
| ! | ATTTGTATAAGCACATTGTA+AGG | + | chr1.4:73169600-73169619 | None:intergenic | 25.0% |
| ! | CAATGTTAAGGAGAATTTAA+TGG | + | chr1.4:73167824-73167843 | None:intergenic | 25.0% |
| ! | CATATGAAATGGTGTTTATT+TGG | + | chr1.4:73170142-73170161 | None:intergenic | 25.0% |
| ! | CTTGAATAAGAAGTTATAAC+AGG | - | chr1.4:73169552-73169571 | MS.gene60853:CDS | 25.0% |
| ! | GAAATTACCAAAAGGAAATA+TGG | + | chr1.4:73167654-73167673 | None:intergenic | 25.0% |
| ! | TAAATAGTAGTAACACAACA+AGG | + | chr1.4:73168847-73168866 | None:intergenic | 25.0% |
| ! | TATAACTGTTGAGTTTAATC+TGG | - | chr1.4:73169148-73169167 | MS.gene60853:intron | 25.0% |
| ! | TATCAATCAATCATAACTGT+TGG | + | chr1.4:73167770-73167789 | None:intergenic | 25.0% |
| ! | TCATTACTTGAAGGATTATT+AGG | + | chr1.4:73170587-73170606 | None:intergenic | 25.0% |
| ! | TCCTCATAGATTTATATCTT+CGG | + | chr1.4:73168562-73168581 | None:intergenic | 25.0% |
| ! | TGCCATATATTCATATAGTT+GGG | - | chr1.4:73170746-73170765 | MS.gene60853:intron | 25.0% |
| ! | TGTTGTCAATGAAAACAAAA+GGG | - | chr1.4:73168209-73168228 | MS.gene60853:intron | 25.0% |
| ! | TTCTATATAGTCACAATCAA+TGG | - | chr1.4:73169976-73169995 | MS.gene60853:CDS | 25.0% |
| ! | TTGAAGACCATTAATGTAAA+TGG | + | chr1.4:73167442-73167461 | None:intergenic | 25.0% |
| !! | AATTTTCAATATTAGTGACG+TGG | + | chr1.4:73170856-73170875 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAGATGATTTCTT+TGG | - | chr1.4:73170541-73170560 | MS.gene60853:intron | 25.0% |
| !!! | GATTGATAGTGTAAAAACTA+CGG | - | chr1.4:73167782-73167801 | MS.gene60853:intron | 25.0% |
| !!! | GCTCTTTTGATGATATATTT+TGG | - | chr1.4:73169383-73169402 | MS.gene60853:intron | 25.0% |
| !!! | TACTATTTGAAAGCTGTTTT+TGG | - | chr1.4:73168921-73168940 | MS.gene60853:intron | 25.0% |
| !!! | TATTGATTTTTTAATGGAGC+CGG | + | chr1.4:73170893-73170912 | None:intergenic | 25.0% |
| ACCATTAATGTAAATGGCTT+TGG | + | chr1.4:73167436-73167455 | None:intergenic | 30.0% | |
| ACCCCAACTATATGAATATA+TGG | + | chr1.4:73170751-73170770 | None:intergenic | 30.0% | |
| ACTTCCAATACTTAATCCAT+TGG | - | chr1.4:73169257-73169276 | MS.gene60853:CDS | 30.0% | |
| AGAAGAGATAAACAACTAGA+GGG | + | chr1.4:73170503-73170522 | None:intergenic | 30.0% | |
| AGGAAGAATTGCATATAAAC+TGG | + | chr1.4:73168464-73168483 | None:intergenic | 30.0% | |
| ATATATCTACATCGCTTGAT+TGG | + | chr1.4:73170678-73170697 | None:intergenic | 30.0% | |
| ATATGCTATTGATGCAAGTA+AGG | + | chr1.4:73169310-73169329 | None:intergenic | 30.0% | |
| ATATTCATATAGTTGGGGTA+TGG | - | chr1.4:73170752-73170771 | MS.gene60853:intron | 30.0% | |
| ATTACCAAAAGGAAATATGG+TGG | + | chr1.4:73167651-73167670 | None:intergenic | 30.0% | |
| CAAAATGCAATAGACATTTG+AGG | + | chr1.4:73170722-73170741 | None:intergenic | 30.0% | |
| CAACAAGAATACAGTGAAAA+AGG | + | chr1.4:73167971-73167990 | None:intergenic | 30.0% | |
| CATCTCACAATGTAGATATT+TGG | + | chr1.4:73169884-73169903 | None:intergenic | 30.0% | |
| CTAAAACCTTTGCATTCAAA+GGG | + | chr1.4:73170405-73170424 | None:intergenic | 30.0% | |
| GCCATATATTCATATAGTTG+GGG | - | chr1.4:73170747-73170766 | MS.gene60853:intron | 30.0% | |
| GTAAGTGCAGCAAAAATTAA+TGG | - | chr1.4:73171026-73171045 | MS.gene60853:intron | 30.0% | |
| GTATTCTACTTACAAGTCAA+AGG | + | chr1.4:73170274-73170293 | None:intergenic | 30.0% | |
| TAATCCTTCAAGTAATGACT+TGG | - | chr1.4:73170589-73170608 | MS.gene60853:intron | 30.0% | |
| TAGAAGAGATAAACAACTAG+AGG | + | chr1.4:73170504-73170523 | None:intergenic | 30.0% | |
| TATTCATATAGTTGGGGTAT+GGG | - | chr1.4:73170753-73170772 | MS.gene60853:intron | 30.0% | |
| TATTGAAACCTGAAACAAGT+AGG | + | chr1.4:73168423-73168442 | None:intergenic | 30.0% | |
| TCCAAAGCCATTTACATTAA+TGG | - | chr1.4:73167432-73167451 | MS.gene60853:intron | 30.0% | |
| TGAAGTGATCAACAATGTTA+AGG | + | chr1.4:73167836-73167855 | None:intergenic | 30.0% | |
| TGATTGTGACTATATAGAAG+TGG | + | chr1.4:73169975-73169994 | None:intergenic | 30.0% | |
| TTCACTGTATTCTTGTTGAT+TGG | - | chr1.4:73167973-73167992 | MS.gene60853:CDS | 30.0% | |
| TTGAAAACATACCAGCAAAA+CGG | + | chr1.4:73168795-73168814 | None:intergenic | 30.0% | |
| ! | AAAGCACAAACTTTTATTGC+TGG | - | chr1.4:73170205-73170224 | MS.gene60853:intron | 30.0% |
| ! | AAGCACAAACTTTTATTGCT+GGG | - | chr1.4:73170206-73170225 | MS.gene60853:intron | 30.0% |
| ! | AGTTACAATCATTAGTTTGG+AGG | + | chr1.4:73169048-73169067 | None:intergenic | 30.0% |
| ! | GTTACAATCATTAGTTTGGA+GGG | + | chr1.4:73169047-73169066 | None:intergenic | 30.0% |
| ! | TCCTCAAAACTACATTTTTG+TGG | - | chr1.4:73168305-73168324 | MS.gene60853:CDS | 30.0% |
| ! | TTATCAATTTTACTCACCCA+AGG | + | chr1.4:73169441-73169460 | None:intergenic | 30.0% |
| !! | AATTGGTTCAATCTTTTCTC+AGG | - | chr1.4:73168986-73169005 | MS.gene60853:intron | 30.0% |
| !! | ACCACAAAAATGTAGTTTTG+AGG | + | chr1.4:73168309-73168328 | None:intergenic | 30.0% |
| !! | TTTTTCAGTCCTACATTAAG+AGG | - | chr1.4:73168719-73168738 | MS.gene60853:intron | 30.0% |
| !!! | ATTAATGGACTTTTCAATGG+TGG | - | chr1.4:73171041-73171060 | MS.gene60853:intron | 30.0% |
| !!! | CTAGTTTTACAGTTTCAACT+AGG | + | chr1.4:73168484-73168503 | None:intergenic | 30.0% |
| !!! | TTGATGATATATTTTGGTGC+AGG | - | chr1.4:73169389-73169408 | MS.gene60853:intron | 30.0% |
| AAAAGGACAACAAACCTGAT+TGG | + | chr1.4:73170076-73170095 | None:intergenic | 35.0% | |
| AAATTCTTGAAACTGGCAAC+CGG | - | chr1.4:73170871-73170890 | MS.gene60853:intron | 35.0% | |
| AATCAGCTATGATTCAGAAG+CGG | + | chr1.4:73170632-73170651 | None:intergenic | 35.0% | |
| AATCATAACTGTTGGATCGT+TGG | + | chr1.4:73167762-73167781 | None:intergenic | 35.0% | |
| AATTATGGCCTACTTGTTTC+AGG | - | chr1.4:73168412-73168431 | MS.gene60853:intron | 35.0% | |
| AGAGATCGAGATAGAAATCA+TGG | - | chr1.4:73171166-73171185 | MS.gene60853:CDS | 35.0% | |
| ATACCAAAAAAGTGGCATTG+TGG | + | chr1.4:73169840-73169859 | None:intergenic | 35.0% | |
| ATGGGGAAAAATCAATCATC+AGG | + | chr1.4:73171131-73171150 | None:intergenic | 35.0% | |
| ATTCGATGCACGTGTAAAAA+AGG | + | chr1.4:73169808-73169827 | None:intergenic | 35.0% | |
| CCAATACTTAATCCATTGGT+TGG | - | chr1.4:73169261-73169280 | MS.gene60853:CDS | 35.0% | |
| CCATATTTAAGTGCCTCATT+TGG | - | chr1.4:73169705-73169724 | MS.gene60853:intron | 35.0% | |
| CCTAACTCTTGGATATTTGT+GGG | + | chr1.4:73168509-73168528 | None:intergenic | 35.0% | |
| GAAAATTCCAGCAATCTACA+AGG | + | chr1.4:73167549-73167568 | None:intergenic | 35.0% | |
| GACATAGATAATGCCAAATG+AGG | + | chr1.4:73169721-73169740 | None:intergenic | 35.0% | |
| GCCGAAGATATAAATCTATG+AGG | - | chr1.4:73168558-73168577 | MS.gene60853:intron | 35.0% | |
| GCTAAAACCTTTGCATTCAA+AGG | + | chr1.4:73170406-73170425 | None:intergenic | 35.0% | |
| GGAAGTAACAAGTGGAATAA+TGG | + | chr1.4:73167321-73167340 | None:intergenic | 35.0% | |
| GGATCAATTGTACACATACT+AGG | - | chr1.4:73170652-73170671 | MS.gene60853:intron | 35.0% | |
| GTATTGGAAGTAACACAATC+TGG | + | chr1.4:73169248-73169267 | None:intergenic | 35.0% | |
| GTCAAAGGACTCATTACAAT+TGG | + | chr1.4:73170259-73170278 | None:intergenic | 35.0% | |
| TAATTGCAATATCAGGAGAC+AGG | + | chr1.4:73170003-73170022 | None:intergenic | 35.0% | |
| TACTTCCACTAAGCATTCAT+TGG | - | chr1.4:73167334-73167353 | MS.gene60853:CDS | 35.0% | |
| TAGAGGGTAGAATAGATGAA+AGG | + | chr1.4:73170487-73170506 | None:intergenic | 35.0% | |
| TATATGTGCATCTGTATGCA+TGG | - | chr1.4:73170428-73170447 | MS.gene60853:intron | 35.0% | |
| TCACTGCTTGTAGGTAAAAA+AGG | + | chr1.4:73170093-73170112 | None:intergenic | 35.0% | |
| TGATATATCTTTCCTCTGTC+AGG | - | chr1.4:73168182-73168201 | MS.gene60853:intron | 35.0% | |
| TGCACGTGTAAAAAAGGTTA+CGG | + | chr1.4:73169802-73169821 | None:intergenic | 35.0% | |
| TTCTCAGGTATAATGCTTCT+CGG | - | chr1.4:73169001-73169020 | MS.gene60853:intron | 35.0% | |
| TTGCAGATGTTGCAAGTAAA+GGG | + | chr1.4:73167874-73167893 | None:intergenic | 35.0% | |
| TTTCTGCTTCACATGTTGTT+GGG | - | chr1.4:73168262-73168281 | MS.gene60853:intron | 35.0% | |
| ! | AAATTCCTCAGATTGATTCC+AGG | + | chr1.4:73168013-73168032 | None:intergenic | 35.0% |
| ! | AGCACAAACTTTTATTGCTG+GGG | - | chr1.4:73170207-73170226 | MS.gene60853:intron | 35.0% |
| ! | CCAAATGAGGCACTTAAATA+TGG | + | chr1.4:73169708-73169727 | None:intergenic | 35.0% |
| ! | GTCTCTTTCTTTTACGAGTT+GGG | - | chr1.4:73168752-73168771 | MS.gene60853:intron | 35.0% |
| ! | TGTCTCTTTCTTTTACGAGT+TGG | - | chr1.4:73168751-73168770 | MS.gene60853:intron | 35.0% |
| ! | TTTTCTGCTTCACATGTTGT+TGG | - | chr1.4:73168261-73168280 | MS.gene60853:intron | 35.0% |
| !! | ATGATGGTACTTCCACTTTT+GGG | - | chr1.4:73167572-73167591 | MS.gene60853:intron | 35.0% |
| !! | CCAACCAATGGATTAAGTAT+TGG | + | chr1.4:73169264-73169283 | None:intergenic | 35.0% |
| !! | GATGATTGATTTTTCCCCAT+AGG | - | chr1.4:73171131-73171150 | MS.gene60853:CDS | 35.0% |
| !! | TGCTGGAATTTTCAAGATGA+TGG | - | chr1.4:73167556-73167575 | MS.gene60853:intron | 35.0% |
| !!! | AAACCACAATGCCACTTTTT+TGG | - | chr1.4:73169834-73169853 | MS.gene60853:intron | 35.0% |
| !!! | CTTTTTTCCTTGTAGATTGC+TGG | - | chr1.4:73167539-73167558 | MS.gene60853:intron | 35.0% |
| AAAACATACCAGCAAAACGG+TGG | + | chr1.4:73168792-73168811 | None:intergenic | 40.0% | |
| AACAAAAGGGCAGCAGTATT+TGG | - | chr1.4:73168222-73168241 | MS.gene60853:intron | 40.0% | |
| AATTGTGCGAAGCACATAGT+AGG | + | chr1.4:73168043-73168062 | None:intergenic | 40.0% | |
| ACAATCTGGAAGAAGTTGAC+AGG | + | chr1.4:73169234-73169253 | None:intergenic | 40.0% | |
| ACCAAAAGGAAATATGGTGG+TGG | + | chr1.4:73167648-73167667 | None:intergenic | 40.0% | |
| ATCACATATCTACTCACAGC+TGG | + | chr1.4:73169753-73169772 | None:intergenic | 40.0% | |
| ATCACTTTCTCTCCAACCAA+TGG | + | chr1.4:73169276-73169295 | None:intergenic | 40.0% | |
| ATCAGCTATGATTCAGAAGC+GGG | + | chr1.4:73170631-73170650 | None:intergenic | 40.0% | |
| CCCACAAATATCCAAGAGTT+AGG | - | chr1.4:73168506-73168525 | MS.gene60853:intron | 40.0% | |
| CCTGAAGATTACTATTTCCG+CGG | + | chr1.4:73168588-73168607 | None:intergenic | 40.0% | |
| CGGTGATGAGATGATATTGT+CGG | - | chr1.4:73171208-73171227 | MS.gene60853:CDS | 40.0% | |
| GACATGGTAACAAGGAGTAA+AGG | + | chr1.4:73167626-73167645 | None:intergenic | 40.0% | |
| GCAATCCAATGAATGCTTAG+TGG | + | chr1.4:73167342-73167361 | None:intergenic | 40.0% | |
| GCCTAACTCTTGGATATTTG+TGG | + | chr1.4:73168510-73168529 | None:intergenic | 40.0% | |
| GCTTCTGAATCATAGCTGAT+TGG | - | chr1.4:73170631-73170650 | MS.gene60853:intron | 40.0% | |
| GGTTACAAGGTTAGGATAAG+AGG | - | chr1.4:73170774-73170793 | MS.gene60853:intron | 40.0% | |
| GTTCTCAGAACTTCTGATGA+TGG | - | chr1.4:73168959-73168978 | MS.gene60853:intron | 40.0% | |
| GTTGCAGATGTTGCAAGTAA+AGG | + | chr1.4:73167875-73167894 | None:intergenic | 40.0% | |
| TAAATCTATGAGGAATGCCG+CGG | - | chr1.4:73168568-73168587 | MS.gene60853:intron | 40.0% | |
| TCAAGTGCAGCAAAAATTGC+TGG | - | chr1.4:73170987-73171006 | MS.gene60853:intron | 40.0% | |
| TCCTCCAAGTCATTACTTGA+AGG | + | chr1.4:73170596-73170615 | None:intergenic | 40.0% | |
| TGAGTTTCATTCACGAATGC+AGG | - | chr1.4:73169680-73169699 | MS.gene60853:intron | 40.0% | |
| TGCTTAGTGGAAGTAACAAG+TGG | + | chr1.4:73167329-73167348 | None:intergenic | 40.0% | |
| TGGTAAGAGATAATGCTCTG+TGG | + | chr1.4:73170122-73170141 | None:intergenic | 40.0% | |
| TTGGAGCAAGATGATTGTTG+AGG | + | chr1.4:73167417-73167436 | None:intergenic | 40.0% | |
| TTGTTGAGGACATAAAGCAG+TGG | + | chr1.4:73167403-73167422 | None:intergenic | 40.0% | |
| TTTGCTGCACTTGACATATG+CGG | + | chr1.4:73170981-73171000 | None:intergenic | 40.0% | |
| ! | CATTAGTTTGGAGGGATCAA+AGG | + | chr1.4:73169039-73169058 | None:intergenic | 40.0% |
| ! | TCCACCACCATATTTCCTTT+TGG | - | chr1.4:73167644-73167663 | MS.gene60853:intron | 40.0% |
| ! | TCCTTCAAGTAATGACTTGG+AGG | - | chr1.4:73170592-73170611 | MS.gene60853:intron | 40.0% |
| ! | TGATTTTTCCCCATAGGAAC+TGG | - | chr1.4:73171137-73171156 | MS.gene60853:CDS | 40.0% |
| !! | GATGATGGTACTTCCACTTT+TGG | - | chr1.4:73167571-73167590 | MS.gene60853:intron | 40.0% |
| !! | TCAGAACTTCTGATGATGGT+CGG | - | chr1.4:73168963-73168982 | MS.gene60853:intron | 40.0% |
| !! | TTGGCTTTCTGGATTAGCAT+GGG | - | chr1.4:73169413-73169432 | MS.gene60853:intron | 40.0% |
| !! | TTTTACGAGTTGGGAATGTC+TGG | - | chr1.4:73168761-73168780 | MS.gene60853:intron | 40.0% |
| !!! | GATATATTTTGGTGCAGGCT+TGG | - | chr1.4:73169394-73169413 | MS.gene60853:intron | 40.0% |
| AAAGGGCAGCAGTATTTGGT+TGG | - | chr1.4:73168226-73168245 | MS.gene60853:intron | 45.0% | |
| ACATGTTGTTGGGAACGTCT+TGG | - | chr1.4:73168272-73168291 | MS.gene60853:CDS | 45.0% | |
| ACTTGCCTGGAATCAATCTG+AGG | - | chr1.4:73168005-73168024 | MS.gene60853:intron | 45.0% | |
| AGAGCCATGCCTCTTAATGT+AGG | + | chr1.4:73168731-73168750 | None:intergenic | 45.0% | |
| AGCATCAAGCTCAACCAATC+AGG | - | chr1.4:73170059-73170078 | MS.gene60853:CDS | 45.0% | |
| CAATCATCAGGTAATGTCGC+CGG | + | chr1.4:73171119-73171138 | None:intergenic | 45.0% | |
| CAGTCCTACATTAAGAGGCA+TGG | - | chr1.4:73168724-73168743 | MS.gene60853:intron | 45.0% | |
| CATCTGCAACAACTGTAGAG+TGG | - | chr1.4:73167885-73167904 | MS.gene60853:intron | 45.0% | |
| CCGCGGAAATAGTAATCTTC+AGG | - | chr1.4:73168585-73168604 | MS.gene60853:intron | 45.0% | |
| CGAGATAGAAATCATGGCCA+AGG | - | chr1.4:73171172-73171191 | MS.gene60853:CDS | 45.0% | |
| GACCATGTTCATCTGAAAGC+TGG | + | chr1.4:73167598-73167617 | None:intergenic | 45.0% | |
| GATGCTCCCTTTGAATGCAA+AGG | - | chr1.4:73170396-73170415 | MS.gene60853:intron | 45.0% | |
| GCAGTATTTGGTTGGATCAC+TGG | - | chr1.4:73168234-73168253 | MS.gene60853:intron | 45.0% | |
| TAGAGCAGAAGCCTAACTCT+TGG | + | chr1.4:73168520-73168539 | None:intergenic | 45.0% | |
| TCAGGTATAATGCTTCTCGG+AGG | - | chr1.4:73169004-73169023 | MS.gene60853:intron | 45.0% | |
| TCTCTCGATCCAGTTCCTAT+GGG | + | chr1.4:73171149-73171168 | None:intergenic | 45.0% | |
| TGATATTGTCGGCGAGATTG+TGG | - | chr1.4:73171219-73171238 | MS.gene60853:CDS | 45.0% | |
| ! | GCACTCTCTTTTAGACACTC+CGG | - | chr1.4:73170819-73170838 | MS.gene60853:intron | 45.0% |
| ! | TACTCACAGCTGGTTTCACA+AGG | + | chr1.4:73169743-73169762 | None:intergenic | 45.0% |
| ! | TAGTTGGGGTATGGGTTACA+AGG | - | chr1.4:73170761-73170780 | MS.gene60853:intron | 45.0% |
| ! | TGGTATAACCACCGTTTTGC+TGG | - | chr1.4:73168781-73168800 | MS.gene60853:intron | 45.0% |
| ! | TTGGTGTAGCTTTACTTGCC+TGG | - | chr1.4:73167992-73168011 | MS.gene60853:intron | 45.0% |
| !! | AGGAAATATGGTGGTGGACA+TGG | + | chr1.4:73167642-73167661 | None:intergenic | 45.0% |
| !! | CTTCTGATGATGGTCGGAAT+TGG | - | chr1.4:73168969-73168988 | MS.gene60853:intron | 45.0% |
| !! | CTTGGCTTTCTGGATTAGCA+TGG | - | chr1.4:73169412-73169431 | MS.gene60853:intron | 45.0% |
| !! | CTTTTCAATGGTGGAACCGT+CGG | - | chr1.4:73171050-73171069 | MS.gene60853:intron | 45.0% |
| !!! | TAATCTTTTTTAATAAAAAT+GGG | - | chr1.4:73170935-73170954 | MS.gene60853:CDS | 5.0% |
| !!! | TTAATCTTTTTTAATAAAAA+TGG | - | chr1.4:73170934-73170953 | MS.gene60853:CDS | 5.0% |
| AAATTCCACAGCAACGACGG+AGG | - | chr1.4:73171083-73171102 | MS.gene60853:CDS | 50.0% | |
| CTCTCGATCCAGTTCCTATG+GGG | + | chr1.4:73171148-73171167 | None:intergenic | 50.0% | |
| CTCTCTCGATCCAGTTCCTA+TGG | + | chr1.4:73171150-73171169 | None:intergenic | 50.0% | |
| CTGCACTTGACATATGCGGA+AGG | + | chr1.4:73170977-73170996 | None:intergenic | 50.0% | |
| GCCAAATTCCACAGCAACGA+CGG | - | chr1.4:73171080-73171099 | MS.gene60853:CDS | 50.0% | |
| GGCCAGCTTTCAGATGAACA+TGG | - | chr1.4:73167593-73167612 | MS.gene60853:intron | 50.0% | |
| TCCGTCGTTGCTGTGGAATT+TGG | + | chr1.4:73171084-73171103 | None:intergenic | 50.0% | |
| TCTGAAAGCTGGCCCAAAAG+TGG | + | chr1.4:73167587-73167606 | None:intergenic | 50.0% | |
| TGACAACATCTGCCTGACAG+AGG | + | chr1.4:73168197-73168216 | None:intergenic | 50.0% | |
| TTAGACACTCCGGCTGTCAT+TGG | - | chr1.4:73170829-73170848 | MS.gene60853:intron | 50.0% | |
| ! | GGGGTATGGGTTACAAGGTT+AGG | - | chr1.4:73170766-73170785 | MS.gene60853:intron | 50.0% |
| !! | TGGATTAGCATGGGCACCTT+GGG | - | chr1.4:73169422-73169441 | MS.gene60853:intron | 50.0% |
| !! | TGGCTAGCTTCACTGCTTGT+AGG | + | chr1.4:73170102-73170121 | None:intergenic | 50.0% |
| !! | TGGTGGTGGACATGGTAACA+AGG | + | chr1.4:73167634-73167653 | None:intergenic | 50.0% |
| ACCGTCGCTTCTCTCAACCT+TGG | + | chr1.4:73171192-73171211 | None:intergenic | 55.0% | |
| CTGCATCTCTGTCGCGTATG+TGG | - | chr1.4:73168092-73168111 | MS.gene60853:intron | 55.0% | |
| GCCAAGGTTGAGAGAAGCGA+CGG | - | chr1.4:73171188-73171207 | MS.gene60853:CDS | 55.0% | |
| TCATCAGGTAATGTCGCCGG+AGG | + | chr1.4:73171116-73171135 | None:intergenic | 55.0% | |
| TGACGTGGACCAATGACAGC+CGG | + | chr1.4:73170841-73170860 | None:intergenic | 55.0% | |
| TGTGGCCAGACAGCAAGTGT+TGG | - | chr1.4:73171237-73171256 | MS.gene60853:CDS | 55.0% | |
| ! | TTCAATGGTGGAACCGTCGG+TGG | - | chr1.4:73171053-73171072 | MS.gene60853:intron | 55.0% |
| ! | TTGGTGCAGGCTTGGCTTTC+TGG | - | chr1.4:73169402-73169421 | MS.gene60853:intron | 55.0% |
| !! | CTGGATTAGCATGGGCACCT+TGG | - | chr1.4:73169421-73169440 | MS.gene60853:intron | 55.0% |
| GAATTTGGCGTCGCCACCGA+CGG | + | chr1.4:73171069-73171088 | None:intergenic | 60.0% | |
| GCAAACCTCCGTCGTTGCTG+TGG | + | chr1.4:73171091-73171110 | None:intergenic | 60.0% | |
| ! | CGACGGAGGTTTGCTTCCTC+CGG | - | chr1.4:73171097-73171116 | MS.gene60853:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73167285 | 73171262 | 73167285 | ID=MS.gene60853 |
| chr1.4 | mRNA | 73167285 | 73171262 | 73167285 | ID=MS.gene60853.t1;Parent=MS.gene60853 |
| chr1.4 | exon | 73171080 | 73171262 | 73171080 | ID=MS.gene60853.t1.exon1;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73171080 | 73171262 | 73171080 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73170882 | 73170993 | 73170882 | ID=MS.gene60853.t1.exon2;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73170882 | 73170993 | 73170882 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73170434 | 73170546 | 73170434 | ID=MS.gene60853.t1.exon3;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73170434 | 73170546 | 73170434 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73170221 | 73170343 | 73170221 | ID=MS.gene60853.t1.exon4;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73170221 | 73170343 | 73170221 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73169941 | 73170113 | 73169941 | ID=MS.gene60853.t1.exon5;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73169941 | 73170113 | 73169941 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73169745 | 73169820 | 73169745 | ID=MS.gene60853.t1.exon6;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73169745 | 73169820 | 73169745 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73169540 | 73169626 | 73169540 | ID=MS.gene60853.t1.exon7;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73169540 | 73169626 | 73169540 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73169218 | 73169298 | 73169218 | ID=MS.gene60853.t1.exon8;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73169218 | 73169298 | 73169218 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73169104 | 73169136 | 73169104 | ID=MS.gene60853.t1.exon9;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73169104 | 73169136 | 73169104 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73168792 | 73168845 | 73168792 | ID=MS.gene60853.t1.exon10;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73168792 | 73168845 | 73168792 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73168467 | 73168508 | 73168467 | ID=MS.gene60853.t1.exon11;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73168467 | 73168508 | 73168467 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73168267 | 73168345 | 73168267 | ID=MS.gene60853.t1.exon12;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73168267 | 73168345 | 73168267 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73168098 | 73168168 | 73168098 | ID=MS.gene60853.t1.exon13;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73168098 | 73168168 | 73168098 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73167948 | 73167996 | 73167948 | ID=MS.gene60853.t1.exon14;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73167948 | 73167996 | 73167948 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| chr1.4 | exon | 73167285 | 73167394 | 73167285 | ID=MS.gene60853.t1.exon15;Parent=MS.gene60853.t1 |
| chr1.4 | CDS | 73167285 | 73167394 | 73167285 | ID=cds.MS.gene60853.t1;Parent=MS.gene60853.t1 |
| Gene Sequence |
| Protein sequence |
