Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76248.t1 | RHN82494.1 | 96.1 | 77 | 3 | 0 | 1 | 77 | 57 | 133 | 2.80E-29 | 137.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76248.t1 | G7ZYS9 | 96.1 | 77 | 3 | 0 | 1 | 77 | 1 | 77 | 2.0e-29 | 137.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene76248 | -0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene76248 | 0.811483 | 6.84E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene76248 | 0.808252 | 3.39E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene76248 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene049680 | MS.gene76248 | 0.80494 | 1.70E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene76248 | 0.812235 | 4.70E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene76248 | 0.811388 | 7.18E-51 | -1.69E-46 |
| MS.gene050253 | MS.gene76248 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene76248 | 0.817049 | 4.03E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene76248 | 0.815315 | 9.84E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene76248 | 0.808548 | 2.93E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene76248 | 0.846793 | 1.74E-59 | -1.69E-46 |
| MS.gene050838 | MS.gene76248 | 0.82332 | 1.48E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene76248 | 0.835469 | 1.65E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene76248 | 0.850903 | 1.26E-60 | -1.69E-46 |
| MS.gene051063 | MS.gene76248 | 0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene76248 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene051330 | MS.gene76248 | 0.807673 | 4.51E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene76248 | 0.823844 | 1.11E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene76248 | 0.808108 | 3.64E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene76248 | 0.8479 | 8.63E-60 | -1.69E-46 |
| MS.gene051700 | MS.gene76248 | 0.819392 | 1.19E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene76248 | 0.833585 | 4.90E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene76248 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene76248 | 0.847371 | 1.21E-59 | -1.69E-46 |
| MS.gene051902 | MS.gene76248 | 0.82885 | 7.15E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene76248 | 0.849848 | 2.49E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene76248 | 0.876294 | 1.57E-68 | -1.69E-46 |
| MS.gene052072 | MS.gene76248 | 0.831175 | 1.94E-55 | -1.69E-46 |
| MS.gene052296 | MS.gene76248 | 0.825564 | 4.38E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene76248 | 0.802631 | 5.12E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene76248 | 0.806897 | 6.58E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene76248 | 0.803368 | 3.60E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene76248 | 0.860164 | 2.50E-63 | -1.69E-46 |
| MS.gene053045 | MS.gene76248 | 0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene76248 | 0.801087 | 1.06E-48 | -1.69E-46 |
| MS.gene053298 | MS.gene76248 | 0.840471 | 8.53E-58 | -1.69E-46 |
| MS.gene053340 | MS.gene76248 | 0.811519 | 6.72E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene76248 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene76248 | 0.803976 | 2.70E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene76248 | 0.81209 | 5.05E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene76248 | 0.821082 | 4.88E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene76248 | 0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene054403 | MS.gene76248 | 0.849738 | 2.67E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene76248 | 0.800274 | 1.56E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene76248 | 0.880335 | 5.97E-70 | -1.69E-46 |
| MS.gene05517 | MS.gene76248 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene76248 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene76248 | 0.814581 | 1.43E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene76248 | 0.823923 | 1.07E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene76248 | 0.853057 | 3.07E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene76248 | 0.815347 | 9.68E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene76248 | 0.805328 | 1.41E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene76248 | 0.852986 | 3.22E-61 | -1.69E-46 |
| MS.gene056787 | MS.gene76248 | 0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene056901 | MS.gene76248 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene76248 | 0.884018 | 2.74E-71 | -1.69E-46 |
| MS.gene057057 | MS.gene76248 | 0.800192 | 1.62E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene76248 | 0.836582 | 8.60E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene76248 | 0.853903 | 1.76E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene76248 | 0.825182 | 5.39E-54 | -1.69E-46 |
| MS.gene057694 | MS.gene76248 | 0.80606 | 9.88E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene76248 | 0.832238 | 1.06E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene76248 | 0.827511 | 1.50E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene76248 | -0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene76248 | 0.846023 | 2.82E-59 | -1.69E-46 |
| MS.gene058074 | MS.gene76248 | 0.804803 | 1.81E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene76248 | 0.819563 | 1.09E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene76248 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene76248 | 0.850333 | 1.82E-60 | -1.69E-46 |
| MS.gene059171 | MS.gene76248 | 0.804154 | 2.47E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene76248 | 0.837739 | 4.35E-57 | -1.69E-46 |
| MS.gene059830 | MS.gene76248 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene76248 | -0.819427 | 1.17E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene76248 | -0.819781 | 9.70E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene76248 | 0.838411 | 2.92E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene76248 | 0.890917 | 6.38E-74 | -1.69E-46 |
| MS.gene060365 | MS.gene76248 | 0.827003 | 1.99E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene76248 | 0.815895 | 7.31E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene76248 | 0.834274 | 3.29E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene76248 | 0.863882 | 1.81E-64 | -1.69E-46 |
| MS.gene060830 | MS.gene76248 | 0.812062 | 5.12E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene76248 | 0.820239 | 7.62E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene76248 | 0.819461 | 1.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76248.t1 | MTR_1g111840 | 96.104 | 77 | 3 | 0 | 1 | 77 | 1 | 77 | 1.08e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76248.t1 | AT5G04750 | 58.730 | 63 | 23 | 3 | 13 | 73 | 25 | 86 | 4.37e-13 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTTGGTACCTTGTTAT+CGG | 0.335217 | 1.1:+78957042 | None:intergenic |
| ATCTGTAGGTTTCTCCGCCT+TGG | 0.365908 | 1.1:+78957069 | None:intergenic |
| CACAACTGCGCACCATGGTA+AGG | 0.400797 | 1.1:+78955818 | None:intergenic |
| CAAAGAAAACGTCTACATTC+AGG | 0.413338 | 1.1:-78957219 | MS.gene76248:intron |
| GAAATGGGAGAGGGAAAGGT+TGG | 0.423182 | 1.1:-78957119 | MS.gene76248:CDS |
| ACAGAAGCTAGCGGCTGATA+AGG | 0.427012 | 1.1:-78957092 | MS.gene76248:CDS |
| ATGCGCCTTCCAAGCACAGC+AGG | 0.431050 | 1.1:-78955853 | MS.gene76248:CDS |
| AGGGATCGTGACTCGTTCAA+TGG | 0.456515 | 1.1:-78957315 | MS.gene76248:CDS |
| TTGTTATCGGCATTATCTGT+AGG | 0.488471 | 1.1:+78957055 | None:intergenic |
| TGTCCATTGCAAATTGTTTG+TGG | 0.522812 | 1.1:-78955877 | MS.gene76248:CDS |
| TCTCGCTTCTTCAGCGGCAA+AGG | 0.525127 | 1.1:-78957269 | MS.gene76248:CDS |
| TTTGTGTGTAGAAATGGGAG+AGG | 0.537501 | 1.1:-78957129 | MS.gene76248:intron |
| TTGTGTGTAGAAATGGGAGA+GGG | 0.546268 | 1.1:-78957128 | MS.gene76248:intron |
| TGTAGAAATGGGAGAGGGAA+AGG | 0.549281 | 1.1:-78957123 | MS.gene76248:intron |
| TGCGCCTTCCAAGCACAGCA+GGG | 0.549426 | 1.1:-78955852 | MS.gene76248:CDS |
| ACAACTGCGCACCATGGTAA+GGG | 0.550073 | 1.1:+78955819 | None:intergenic |
| CGCCTTCCAAGCACAGCAGG+GGG | 0.563933 | 1.1:-78955850 | MS.gene76248:CDS |
| GCGCCTTCCAAGCACAGCAG+GGG | 0.568690 | 1.1:-78955851 | MS.gene76248:CDS |
| GGGATGATTGCCCCTTACCA+TGG | 0.579577 | 1.1:-78955830 | MS.gene76248:CDS |
| CAACTGCGCACCATGGTAAG+GGG | 0.587511 | 1.1:+78955820 | None:intergenic |
| TACAGATAATGCCGATAACA+AGG | 0.591322 | 1.1:-78957053 | MS.gene76248:intron |
| TCAATGGATTCAACATCTCG+TGG | 0.600776 | 1.1:-78957299 | MS.gene76248:CDS |
| TGAGATCAGCACTGAGTCGA+GGG | 0.604557 | 1.1:-78957334 | MS.gene76248:CDS |
| ATGAGATCAGCACTGAGTCG+AGG | 0.608842 | 1.1:-78957335 | MS.gene76248:CDS |
| GCTTCTTCTCGCTTCTTCAG+CGG | 0.618308 | 1.1:-78957275 | MS.gene76248:CDS |
| ATGCCACAAACAATTTGCAA+TGG | 0.640316 | 1.1:+78955874 | None:intergenic |
| GCTAGCGGCTGATAAGGCCA+AGG | 0.640541 | 1.1:-78957086 | MS.gene76248:CDS |
| CAAAGGTAAGATTCTTAGCG+AGG | 0.644514 | 1.1:-78957252 | MS.gene76248:CDS |
| AGCGGCTGATAAGGCCAAGG+CGG | 0.664107 | 1.1:-78957083 | MS.gene76248:CDS |
| AAGCGCACAACTGCGCACCA+TGG | 0.674306 | 1.1:+78955813 | None:intergenic |
| GTTGGAGAAACAGAAGCTAG+CGG | 0.726434 | 1.1:-78957101 | MS.gene76248:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCTAAAAACAAAATAATT+TGG | + | chr1.1:78956127-78956146 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAGTGAAGAATT+TGG | + | chr1.1:78957165-78957184 | None:intergenic | 15.0% |
| !!! | AATTTTAAGATATGAATCAT+AGG | + | chr1.1:78956355-78956374 | None:intergenic | 15.0% |
| !!! | TACCAAATTATTTTGTTTTT+AGG | - | chr1.1:78956122-78956141 | MS.gene76248:intron | 15.0% |
| !! | ATATCAAAGTTACAGAATAT+TGG | + | chr1.1:78956437-78956456 | None:intergenic | 20.0% |
| !! | ATATTAATAGATCACAAATC+TGG | + | chr1.1:78956195-78956214 | None:intergenic | 20.0% |
| !! | TAAAAAAGGATGAAGAAAAA+GGG | + | chr1.1:78955971-78955990 | None:intergenic | 20.0% |
| !! | TAACTTTGATATGAATATGA+TGG | - | chr1.1:78956445-78956464 | MS.gene76248:intron | 20.0% |
| !! | TATCAAAGTTACAGAATATT+GGG | + | chr1.1:78956436-78956455 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTCTGCATATTT+TGG | - | chr1.1:78956157-78956176 | MS.gene76248:intron | 20.0% |
| !!! | TATTTCTTTCTGCATATTTT+GGG | - | chr1.1:78956158-78956177 | MS.gene76248:intron | 20.0% |
| !!! | TTTGAAATTGTATCATATGA+TGG | - | chr1.1:78956327-78956346 | MS.gene76248:intron | 20.0% |
| !!! | TTTTTGATTTGGTGTATTTT+TGG | - | chr1.1:78956248-78956267 | MS.gene76248:intron | 20.0% |
| ! | AAAAAAGGATGAAGAAAAAG+GGG | + | chr1.1:78955970-78955989 | None:intergenic | 25.0% |
| ! | AATTCGATTTCATTGAAACT+TGG | + | chr1.1:78956781-78956800 | None:intergenic | 25.0% |
| ! | AGAATTTAAGAAGCTAAAAG+TGG | + | chr1.1:78956489-78956508 | None:intergenic | 25.0% |
| ! | ATTCGATTTCATTGAAACTT+GGG | + | chr1.1:78956780-78956799 | None:intergenic | 25.0% |
| ! | CAAGAAATTGGATCTAAAAA+AGG | + | chr1.1:78955985-78956004 | None:intergenic | 25.0% |
| ! | CAGAAAGAAAAAAAAAGGAA+GGG | + | chr1.1:78956989-78957008 | None:intergenic | 25.0% |
| ! | CTAAAAAAGGATGAAGAAAA+AGG | + | chr1.1:78955972-78955991 | None:intergenic | 25.0% |
| ! | TCAAAAAATCATCTCAGAAT+TGG | + | chr1.1:78956235-78956254 | None:intergenic | 25.0% |
| !! | ATAATTTGGTACCTTGTTAT+CGG | + | chr1.1:78956113-78956132 | None:intergenic | 25.0% |
| !! | TGATTTTTGTGTGTAGAAAT+GGG | - | chr1.1:78956018-78956037 | MS.gene76248:intron | 25.0% |
| !! | TTGATTTTTGTGTGTAGAAA+TGG | - | chr1.1:78956017-78956036 | MS.gene76248:intron | 25.0% |
| !!! | CTTCCTTTTTTTTTCTTTCT+GGG | - | chr1.1:78956988-78957007 | MS.gene76248:intron | 25.0% |
| !!! | CTTTTAGCTTCTTAAATTCT+TGG | - | chr1.1:78956489-78956508 | MS.gene76248:intron | 25.0% |
| !!! | GAACATATTTTTGCTTAATG+TGG | - | chr1.1:78956543-78956562 | MS.gene76248:intron | 25.0% |
| !!! | GAATTTTGTTTCTTTTACCA+AGG | - | chr1.1:78956517-78956536 | MS.gene76248:intron | 25.0% |
| !!! | TCTGAGATGATTTTTTGATT+TGG | - | chr1.1:78956237-78956256 | MS.gene76248:intron | 25.0% |
| !!! | TTCCTTTTTTTTTCTTTCTG+GGG | - | chr1.1:78956989-78957008 | MS.gene76248:intron | 25.0% |
| !!! | TTTAGTTGATAGCAAAATTG+TGG | + | chr1.1:78957102-78957121 | None:intergenic | 25.0% |
| AAAAAGGATGAAGAAAAAGG+GGG | + | chr1.1:78955969-78955988 | None:intergenic | 30.0% | |
| AAATCGAGTGAAACTAGAAA+TGG | - | chr1.1:78956810-78956829 | MS.gene76248:intron | 30.0% | |
| AATTCGATTTCACTGTCATA+TGG | - | chr1.1:78956617-78956636 | MS.gene76248:intron | 30.0% | |
| AGTTGTGTATAGTGTAAAAG+AGG | + | chr1.1:78957038-78957057 | None:intergenic | 30.0% | |
| ATTGGTTACTCTTTCCAAAA+AGG | + | chr1.1:78956940-78956959 | None:intergenic | 30.0% | |
| CCAGAAAGAAAAAAAAAGGA+AGG | + | chr1.1:78956990-78957009 | None:intergenic | 30.0% | |
| GCAAAAATATGTTCAAACCT+TGG | + | chr1.1:78956537-78956556 | None:intergenic | 30.0% | |
| TAGTTAATGACTAAACAGTG+AGG | + | chr1.1:78956700-78956719 | None:intergenic | 30.0% | |
| TAGTTTCACTCGATTTCTAA+AGG | + | chr1.1:78956806-78956825 | None:intergenic | 30.0% | |
| TTGGTTACTCTTTCCAAAAA+GGG | + | chr1.1:78956939-78956958 | None:intergenic | 30.0% | |
| ! | AAGCAACACACTCTTTTTAA+AGG | - | chr1.1:78956668-78956687 | MS.gene76248:intron | 30.0% |
| ! | AATTTATGCTGTACCCTTTT+TGG | - | chr1.1:78956923-78956942 | MS.gene76248:intron | 30.0% |
| ! | AGCAACACACTCTTTTTAAA+GGG | - | chr1.1:78956669-78956688 | MS.gene76248:intron | 30.0% |
| ! | TCTTTTACACTATACACAAC+TGG | - | chr1.1:78957037-78957056 | MS.gene76248:intron | 30.0% |
| !!! | CCTTCCTTTTTTTTTCTTTC+TGG | - | chr1.1:78956987-78957006 | MS.gene76248:intron | 30.0% |
| !!! | GTATGCTTTAGCACATTTTT+TGG | - | chr1.1:78957223-78957242 | MS.gene76248:CDS | 30.0% |
| AACTAGAAATGGAGTTGGAA+TGG | - | chr1.1:78956821-78956840 | MS.gene76248:intron | 35.0% | |
| AATTTGGTTGCAGTCGTTTA+AGG | + | chr1.1:78957149-78957168 | None:intergenic | 35.0% | |
| AGAATATTGGGAGCTACAAA+AGG | + | chr1.1:78956424-78956443 | None:intergenic | 35.0% | |
| AGAGTAACCAATGTTAGACT+TGG | - | chr1.1:78956948-78956967 | MS.gene76248:intron | 35.0% | |
| AGTGAAACTAGAAATGGAGT+TGG | - | chr1.1:78956816-78956835 | MS.gene76248:intron | 35.0% | |
| ATGCCACAAACAATTTGCAA+TGG | + | chr1.1:78957281-78957300 | None:intergenic | 35.0% | |
| ATTGTGGAGAGATGAATGTA+AGG | + | chr1.1:78957086-78957105 | None:intergenic | 35.0% | |
| ATTTGGTTGCAGTCGTTTAA+GGG | + | chr1.1:78957148-78957167 | None:intergenic | 35.0% | |
| CAAAGAAAACGTCTACATTC+AGG | - | chr1.1:78955933-78955952 | MS.gene76248:intron | 35.0% | |
| CTCCCCAGAAAGAAAAAAAA+AGG | + | chr1.1:78956994-78957013 | None:intergenic | 35.0% | |
| GTTAGTACCAAGTCTAACAT+TGG | + | chr1.1:78956958-78956977 | None:intergenic | 35.0% | |
| TACAGATAATGCCGATAACA+AGG | - | chr1.1:78956099-78956118 | MS.gene76248:intron | 35.0% | |
| TGTCCATTGCAAATTGTTTG+TGG | - | chr1.1:78957275-78957294 | MS.gene76248:CDS | 35.0% | |
| TGTGTATAGTGTAAAAGAGG+TGG | + | chr1.1:78957035-78957054 | None:intergenic | 35.0% | |
| TTGTGGAGAGATGAATGTAA+GGG | + | chr1.1:78957085-78957104 | None:intergenic | 35.0% | |
| TTGTTATCGGCATTATCTGT+AGG | + | chr1.1:78956100-78956119 | None:intergenic | 35.0% | |
| ! | CCAATTTCTTGCTTCTGAAA+CGG | - | chr1.1:78955994-78956013 | MS.gene76248:intron | 35.0% |
| ! | CTGAATGTAGACGTTTTCTT+TGG | + | chr1.1:78955935-78955954 | None:intergenic | 35.0% |
| !! | CAACACACTCTTTTTAAAGG+GGG | - | chr1.1:78956671-78956690 | MS.gene76248:intron | 35.0% |
| !! | GCAACACACTCTTTTTAAAG+GGG | - | chr1.1:78956670-78956689 | MS.gene76248:intron | 35.0% |
| !!! | TTTTTTTTCTTTCTGGGGAG+TGG | - | chr1.1:78956994-78957013 | MS.gene76248:intron | 35.0% |
| ATTCAATGAAACACGACCAC+AGG | + | chr1.1:78956600-78956619 | None:intergenic | 40.0% | |
| CAAAGGTAAGATTCTTAGCG+AGG | - | chr1.1:78955900-78955919 | MS.gene76248:intron | 40.0% | |
| CCGTTTCAGAAGCAAGAAAT+TGG | + | chr1.1:78955997-78956016 | None:intergenic | 40.0% | |
| GAAATGGAGTTGGAATGGTA+AGG | - | chr1.1:78956826-78956845 | MS.gene76248:intron | 40.0% | |
| TCGATTTCACTGTCATATGG+TGG | - | chr1.1:78956620-78956639 | MS.gene76248:intron | 40.0% | |
| TTCCATGTTGCTGTGAATCA+AGG | - | chr1.1:78957252-78957271 | MS.gene76248:CDS | 40.0% | |
| TTGTGTGTAGAAATGGGAGA+GGG | - | chr1.1:78956024-78956043 | MS.gene76248:intron | 40.0% | |
| TTTGTGTGTAGAAATGGGAG+AGG | - | chr1.1:78956023-78956042 | MS.gene76248:intron | 40.0% | |
| ! | CTACGAACACACTCTTTTGA+AGG | - | chr1.1:78956721-78956740 | MS.gene76248:intron | 40.0% |
| ! | TCAATGGATTCAACATCTCG+TGG | - | chr1.1:78955853-78955872 | MS.gene76248:CDS | 40.0% |
| !! | AAAAGAGTGTGTTGCTTGCT+AGG | + | chr1.1:78956665-78956684 | None:intergenic | 40.0% |
| !! | CACTCTTTTGAAGGTGGATT+TGG | - | chr1.1:78956730-78956749 | MS.gene76248:intron | 40.0% |
| !! | TTGAAGGTGGATTTGGCTTT+CGG | - | chr1.1:78956737-78956756 | MS.gene76248:intron | 40.0% |
| CACCTTGATTCACAGCAACA+TGG | + | chr1.1:78957257-78957276 | None:intergenic | 45.0% | |
| GCTTAATGTGGTATTGCACG+TGG | - | chr1.1:78956555-78956574 | MS.gene76248:intron | 45.0% | |
| GTTGGAGAAACAGAAGCTAG+CGG | - | chr1.1:78956051-78956070 | MS.gene76248:intron | 45.0% | |
| TGTAGAAATGGGAGAGGGAA+AGG | - | chr1.1:78956029-78956048 | MS.gene76248:intron | 45.0% | |
| ! | ACGTGGTGATGACATGATTC+TGG | - | chr1.1:78956572-78956591 | MS.gene76248:intron | 45.0% |
| !! | CGAACACACTCTTTTGAAGG+TGG | - | chr1.1:78956724-78956743 | MS.gene76248:intron | 45.0% |
| !! | TGACATGATTCTGGAACCTG+TGG | - | chr1.1:78956581-78956600 | MS.gene76248:intron | 45.0% |
| ACAACTGCGCACCATGGTAA+GGG | + | chr1.1:78957336-78957355 | None:intergenic | 50.0% | |
| ACAGAAGCTAGCGGCTGATA+AGG | - | chr1.1:78956060-78956079 | MS.gene76248:intron | 50.0% | |
| AGGGATCGTGACTCGTTCAA+TGG | - | chr1.1:78955837-78955856 | MS.gene76248:CDS | 50.0% | |
| ATCTGTAGGTTTCTCCGCCT+TGG | + | chr1.1:78956086-78956105 | None:intergenic | 50.0% | |
| GAAATGGGAGAGGGAAAGGT+TGG | - | chr1.1:78956033-78956052 | MS.gene76248:intron | 50.0% | |
| GCTTCTTCTCGCTTCTTCAG+CGG | - | chr1.1:78955877-78955896 | MS.gene76248:CDS | 50.0% | |
| TGGAGTTGGAATGGTAAGGC+AGG | - | chr1.1:78956830-78956849 | MS.gene76248:intron | 50.0% | |
| ! | ATGAGATCAGCACTGAGTCG+AGG | - | chr1.1:78955817-78955836 | MS.gene76248:CDS | 50.0% |
| ! | TGAGATCAGCACTGAGTCGA+GGG | - | chr1.1:78955818-78955837 | MS.gene76248:CDS | 50.0% |
| AATCATCCCCCTGCTGTGCT+TGG | + | chr1.1:78957311-78957330 | None:intergenic | 55.0% | |
| CAACTGCGCACCATGGTAAG+GGG | + | chr1.1:78957335-78957354 | None:intergenic | 55.0% | |
| CACAACTGCGCACCATGGTA+AGG | + | chr1.1:78957337-78957356 | None:intergenic | 55.0% | |
| GGGATGATTGCCCCTTACCA+TGG | - | chr1.1:78957322-78957341 | MS.gene76248:CDS | 55.0% | |
| TCTCGCTTCTTCAGCGGCAA+AGG | - | chr1.1:78955883-78955902 | MS.gene76248:intron | 55.0% | |
| AAGCGCACAACTGCGCACCA+TGG | + | chr1.1:78957342-78957361 | None:intergenic | 60.0% | |
| AGCGGCTGATAAGGCCAAGG+CGG | - | chr1.1:78956069-78956088 | MS.gene76248:intron | 60.0% | |
| ATCCCCCTGCTGTGCTTGGA+AGG | + | chr1.1:78957307-78957326 | None:intergenic | 60.0% | |
| ATGCGCCTTCCAAGCACAGC+AGG | - | chr1.1:78957299-78957318 | MS.gene76248:CDS | 60.0% | |
| GCTAGCGGCTGATAAGGCCA+AGG | - | chr1.1:78956066-78956085 | MS.gene76248:intron | 60.0% | |
| TGCGCCTTCCAAGCACAGCA+GGG | - | chr1.1:78957300-78957319 | MS.gene76248:CDS | 60.0% | |
| CGCCTTCCAAGCACAGCAGG+GGG | - | chr1.1:78957302-78957321 | MS.gene76248:CDS | 65.0% | |
| GCGCCTTCCAAGCACAGCAG+GGG | - | chr1.1:78957301-78957320 | MS.gene76248:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78955811 | 78957363 | 78955811 | ID=MS.gene76248 |
| chr1.1 | mRNA | 78955811 | 78957363 | 78955811 | ID=MS.gene76248.t1;Parent=MS.gene76248 |
| chr1.1 | exon | 78957220 | 78957363 | 78957220 | ID=MS.gene76248.t1.exon1;Parent=MS.gene76248.t1 |
| chr1.1 | CDS | 78957220 | 78957363 | 78957220 | ID=cds.MS.gene76248.t1;Parent=MS.gene76248.t1 |
| chr1.1 | exon | 78957054 | 78957140 | 78957054 | ID=MS.gene76248.t1.exon2;Parent=MS.gene76248.t1 |
| chr1.1 | CDS | 78957054 | 78957140 | 78957054 | ID=cds.MS.gene76248.t1;Parent=MS.gene76248.t1 |
| chr1.1 | exon | 78955811 | 78955900 | 78955811 | ID=MS.gene76248.t1.exon3;Parent=MS.gene76248.t1 |
| chr1.1 | CDS | 78955811 | 78955900 | 78955811 | ID=cds.MS.gene76248.t1;Parent=MS.gene76248.t1 |
| Gene Sequence |
| Protein sequence |
