AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019336.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019336.01.T01 MTR_4g029440 94.353 425 20 2 88 509 1 424 0.0 741
MsG0480019336.01.T01 MTR_4g029440 94.258 418 20 2 95 509 2 418 0.0 727
MsG0480019336.01.T01 MTR_2g061230 43.295 261 118 7 88 347 1 232 9.14e-55 184
MsG0480019336.01.T01 MTR_7g093390 37.276 279 141 7 216 467 167 438 6.04e-46 167
MsG0480019336.01.T01 MTR_1g054280 56.044 91 38 2 214 303 71 160 2.15e-29 117
MsG0480019336.01.T01 MTR_1g054260 49.167 120 49 4 212 319 77 196 4.09e-29 114
MsG0480019336.01.T01 MTR_1g054465 46.923 130 54 6 212 326 45 174 6.44e-28 110
MsG0480019336.01.T01 MTR_1g054210 52.427 103 45 3 204 305 109 208 8.84e-28 111
MsG0480019336.01.T01 MTR_2g090330 46.667 90 44 1 217 302 31 120 2.73e-27 108
MsG0480019336.01.T01 MTR_2g090330 46.667 90 44 1 217 302 28 117 3.60e-27 107
MsG0480019336.01.T01 MTR_1g021895 46.154 91 47 2 215 305 27 115 2.06e-23 99.4
MsG0480019336.01.T01 MTR_5g019300 45.977 87 46 1 219 305 35 120 2.55e-23 99.0
MsG0480019336.01.T01 MTR_2g090325 47.727 88 38 2 214 301 15 94 3.09e-23 97.8
MsG0480019336.01.T01 MTR_8g465910 46.392 97 42 3 214 302 41 135 6.51e-22 95.1
MsG0480019336.01.T01 MTR_2g090295 38.462 130 65 4 179 301 8 129 8.64e-22 95.1
MsG0480019336.01.T01 MTR_4g088870 39.423 104 54 2 212 306 25 128 2.02e-20 89.7
MsG0480019336.01.T01 MTR_2g013550 36.937 111 63 1 203 306 11 121 5.95e-20 89.4
MsG0480019336.01.T01 MTR_4g088875 35.514 107 59 2 210 306 22 128 2.16e-19 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019336.01.T01 AT2G44410 41.538 260 109 5 88 332 10 241 1.13e-52 184
MsG0480019336.01.T01 AT3G58030 50.365 137 57 6 200 331 114 244 1.51e-34 135
MsG0480019336.01.T01 AT3G58030 50.365 137 57 6 200 331 114 244 1.51e-34 135
MsG0480019336.01.T01 AT3G58030 50.365 137 57 6 200 331 114 244 1.51e-34 135
MsG0480019336.01.T01 AT3G58030 50.365 137 57 6 200 331 114 244 1.51e-34 135
MsG0480019336.01.T01 AT1G74990 45.794 107 57 1 212 318 10 115 1.07e-29 114
MsG0480019336.01.T01 AT2G42030 38.608 158 93 2 180 337 100 253 2.63e-28 117
MsG0480019336.01.T01 AT1G19310 49.425 87 43 1 219 305 21 106 1.91e-24 102
MsG0480019336.01.T01 AT2G23780 45.977 87 46 1 219 305 26 111 3.47e-23 98.6
MsG0480019336.01.T01 AT2G23780 45.977 87 46 1 219 305 26 111 3.47e-23 98.6
MsG0480019336.01.T01 AT2G23780 45.977 87 46 1 219 305 26 111 3.47e-23 98.6
MsG0480019336.01.T01 AT4G28270 46.000 100 34 3 215 301 15 107 2.56e-22 95.1
MsG0480019336.01.T01 AT4G27470 36.000 125 63 3 219 330 42 162 2.17e-19 88.2
MsG0480019336.01.T01 AT4G03510 45.055 91 37 3 219 301 46 131 3.01e-18 84.7
MsG0480019336.01.T01 AT4G03510 45.055 91 37 3 219 301 46 131 3.01e-18 84.7
MsG0480019336.01.T01 AT4G03510 45.055 91 37 3 219 301 46 131 3.01e-18 84.7
MsG0480019336.01.T01 AT4G03510 45.055 91 37 3 219 301 46 131 3.01e-18 84.7

Find 127 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGTATTATTCCAATTTA+TGG 0.104536 4:+18627698 MsG0480019336.01.T01:CDS
CTATCAGGTGTTGTGCTATT+AGG 0.192686 4:-18627923 None:intergenic
CCATTTCCATGTCCATAAAT+TGG 0.194274 4:-18627710 None:intergenic
TTATCAACATTCCTACTTAA+AGG 0.205288 4:-18628277 None:intergenic
GTTGATAATGTTGCTGTTAC+AGG 0.242718 4:+18628292 MsG0480019336.01.T01:CDS
TATCAGGTGTTGTGCTATTA+GGG 0.254855 4:-18627922 None:intergenic
CATAACCGAATTGGTGGATT+TGG 0.278139 4:+18627878 MsG0480019336.01.T01:CDS
GGCAAACCATTGTTTCTATC+AGG 0.316222 4:-18627938 None:intergenic
CTTCTATTGTCCAAAGTATT+CGG 0.320027 4:+18627849 MsG0480019336.01.T01:CDS
GGCCAAGGTTGTGTATAATA+TGG 0.346773 4:+18627139 MsG0480019336.01.T01:CDS
CTTTGATTGTAATATTTGTT+TGG 0.349272 4:+18627550 MsG0480019336.01.T01:CDS
GTTGCTAGAAATCCAACTTT+AGG 0.349817 4:+18628169 MsG0480019336.01.T01:CDS
TGATTTGAATCAGGAGCCTT+TGG 0.350787 4:+18627166 MsG0480019336.01.T01:CDS
CAGACAGACAATAATGAAAA+TGG 0.352211 4:+18627977 MsG0480019336.01.T01:CDS
TATGAAACCGCCGAATACTT+TGG 0.373232 4:-18627859 None:intergenic
TTCGAGAGCGAGGCAGCGTC+GGG 0.374026 4:+18627295 MsG0480019336.01.T01:CDS
CCAATTTATGGACATGGAAA+TGG 0.374316 4:+18627710 MsG0480019336.01.T01:CDS
ATTCAGATAACCAATGTTAC+AGG 0.375175 4:+18627341 MsG0480019336.01.T01:CDS
CGCATACCTGATCTGTTCTC+AGG 0.375821 4:-18623845 None:intergenic
TTCTGCTGAAAGATTAGTTC+AGG 0.376998 4:+18628084 MsG0480019336.01.T01:CDS
CGGCGGTTTCATAACCGAAT+TGG 0.383576 4:+18627869 MsG0480019336.01.T01:CDS
TTCAATTATGTCACTATCTC+AGG 0.386361 4:+18626721 MsG0480019336.01.T01:CDS
TATGGAGCTTGATTTGAATC+AGG 0.400185 4:+18627157 MsG0480019336.01.T01:CDS
TGAAAATGGTGGTTCTCAAC+AGG 0.400757 4:+18627991 MsG0480019336.01.T01:CDS
CTCTCGAAGTAATTGCTTCA+AGG 0.402049 4:-18627280 None:intergenic
AGCTGCTGCAGCTACAGAAT+TGG 0.408760 4:-18628245 None:intergenic
GGAGCAGAACGATGCTGATC+AGG 0.412122 4:+18627409 MsG0480019336.01.T01:CDS
CCCAACTGAAGATTATTGAT+TGG 0.413910 4:-18623804 None:intergenic
GACCATTGATATATGATTCA+AGG 0.415979 4:-18628108 None:intergenic
TGCAGTTTCTCCTGTAACAT+TGG 0.419434 4:-18627351 None:intergenic
CTTCTGTTTCTCCTTTAAGT+AGG 0.427847 4:+18628266 MsG0480019336.01.T01:CDS
ATCTGAATCCGAGAGGAGTT+CGG 0.434023 4:-18627326 None:intergenic
GAAGAAGAAGATTGCGATGA+TGG 0.434300 4:+18628428 MsG0480019336.01.T01:CDS
GTGGTTCTCAACAGGTTTCA+AGG 0.435727 4:+18627999 MsG0480019336.01.T01:CDS
GTTACCTCCCCTTTACAAAC+AGG 0.438464 4:-18627671 None:intergenic
TTGCTTCAAGGTGTGTGATT+CGG 0.441946 4:-18627268 None:intergenic
GGGATGGAAGAGATTGATAA+TGG 0.448635 4:+18627500 MsG0480019336.01.T01:CDS
AGGAATGTCCTGTTTGTAAA+GGG 0.451056 4:+18627663 MsG0480019336.01.T01:CDS
TGACCACAACATGTCAAAAC+AGG 0.454953 4:-18627587 None:intergenic
TATATCAATGGTCACAATAC+AGG 0.455204 4:+18628118 MsG0480019336.01.T01:CDS
TAGAAGAAGAAGATGCTCCT+TGG 0.455800 4:-18627832 None:intergenic
TAAAGGGGAGGTAACTGAAT+CGG 0.458742 4:+18627679 MsG0480019336.01.T01:CDS
TCCAATCAATAATCTTCAGT+TGG 0.462683 4:+18623803 MsG0480019336.01.T01:CDS
CTCTCAACTCTAGGTGCCTT+AGG 0.467180 4:-18627788 None:intergenic
AATCTTCAGTTGGGAGGTGA+CGG 0.472338 4:+18623813 MsG0480019336.01.T01:CDS
AGAAGAAGAAGATGCTCCTT+GGG 0.474601 4:-18627831 None:intergenic
GGTAAAGTGGAGGAGAGTAG+TGG 0.474653 4:+18627521 MsG0480019336.01.T01:CDS
CCAATCAATAATCTTCAGTT+GGG 0.474686 4:+18623804 MsG0480019336.01.T01:CDS
CGGTTTCATAACCGAATTGG+TGG 0.476371 4:+18627872 MsG0480019336.01.T01:CDS
GCTCTCCAAATCCACCAATT+CGG 0.478712 4:-18627883 None:intergenic
ATCTTCAGTTGGGAGGTGAC+GGG 0.480930 4:+18623814 MsG0480019336.01.T01:CDS
ATTATTGATTGGAATATTCG+AGG 0.481393 4:-18623793 None:intergenic
GATCTTATCAAAGACGTGTC+CGG 0.486201 4:+18626677 MsG0480019336.01.T01:CDS
TTCAGTTGGGAGGTGACGGG+GGG 0.487020 4:+18623817 MsG0480019336.01.T01:CDS
GGTTGCCGCCGAACTCCTCT+CGG 0.492462 4:+18627318 MsG0480019336.01.T01:CDS
AGAGATTGATAATGGTAAAG+TGG 0.493881 4:+18627508 MsG0480019336.01.T01:CDS
CTTCTACCTCTAGATGAAGA+AGG 0.495035 4:-18628364 None:intergenic
GTCTGCGTGCGAGACTGAAT+AGG 0.495756 4:-18627959 None:intergenic
GTAGCAGCAACACCTAAAGT+TGG 0.498780 4:-18628181 None:intergenic
CATTTGATAGCAAAAGCTCT+AGG 0.498838 4:+18627479 MsG0480019336.01.T01:CDS
TATGTTGGAAGAACTTGAAT+CGG 0.499655 4:+18627226 MsG0480019336.01.T01:CDS
GAGAGTTCCTCCTCGACCTA+AGG 0.502667 4:+18627772 MsG0480019336.01.T01:CDS
AAGGAATGTCCTGTTTGTAA+AGG 0.503450 4:+18627662 MsG0480019336.01.T01:CDS
TCACTATCTCAGGTTACTAC+TGG 0.504315 4:+18626731 MsG0480019336.01.T01:CDS
CTTCGAGAGCGAGGCAGCGT+CGG 0.509799 4:+18627294 MsG0480019336.01.T01:CDS
GACCTTGAATCATATATCAA+TGG 0.517570 4:+18628106 MsG0480019336.01.T01:CDS
AAAGGGGAGGTAACTGAATC+GGG 0.517863 4:+18627680 MsG0480019336.01.T01:CDS
GAAGGGTCTAGCAAACTAAC+CGG 0.525568 4:-18628346 None:intergenic
ATTATTCCAATTTATGGACA+TGG 0.526065 4:+18627704 MsG0480019336.01.T01:CDS
GTGGACCCTGAGAACAGATC+AGG 0.529370 4:+18623839 MsG0480019336.01.T01:CDS
AACGATGCTGATCAGGAGGA+AGG 0.533514 4:+18627416 MsG0480019336.01.T01:CDS
GTAAAGTGGAGGAGAGTAGT+GGG 0.535109 4:+18627522 MsG0480019336.01.T01:CDS
CTTCAGTTGGGAGGTGACGG+GGG 0.537938 4:+18623816 MsG0480019336.01.T01:CDS
TCGAGGAGGAACTCTCAAAC+CGG 0.538001 4:-18627765 None:intergenic
CTAGACCCTTCTTCATCTAG+AGG 0.541703 4:+18628358 MsG0480019336.01.T01:CDS
ACTCTAGGTGCCTTAGGTCG+AGG 0.546117 4:-18627782 None:intergenic
ATCAGCATTAAATTCTGCAA+TGG 0.546759 4:+18628060 MsG0480019336.01.T01:CDS
CAGATGGAAATGAAAGAAGC+CGG 0.547924 4:+18627746 MsG0480019336.01.T01:CDS
GTTGGATTTCTAGCAACAGC+AGG 0.548022 4:-18628163 None:intergenic
TGTCTAATACTCTCAACTCT+AGG 0.555708 4:-18627797 None:intergenic
GGATAGTTGAAAGTGTGAAA+GGG 0.557671 4:+18627438 MsG0480019336.01.T01:CDS
TCTTCAGTTGGGAGGTGACG+GGG 0.559456 4:+18623815 MsG0480019336.01.T01:CDS
GCAACAGCAGATGATGTTCA+AGG 0.560673 4:+18627371 MsG0480019336.01.T01:CDS
CTCCATATTATACACAACCT+TGG 0.560803 4:-18627141 None:intergenic
GTTTCAAGGTTGCTAGAGCA+AGG 0.560862 4:+18628013 MsG0480019336.01.T01:CDS
GATAGTTGAAAGTGTGAAAG+GGG 0.566431 4:+18627439 MsG0480019336.01.T01:CDS
GATTGGAATATTCGAGGAGT+CGG 0.571504 4:-18623787 None:intergenic
TACAACTGATAGAAATGTAC+CGG 0.572001 4:+18628327 MsG0480019336.01.T01:CDS
GGGATAGTTGAAAGTGTGAA+AGG 0.577330 4:+18627437 MsG0480019336.01.T01:CDS
CGAGAGCGAGGCAGCGTCGG+GGG 0.578008 4:+18627297 MsG0480019336.01.T01:CDS
ATGATGTTCAAGGCGGAGAA+CGG 0.579407 4:+18627381 MsG0480019336.01.T01:CDS
TAGTTGAAAGTGTGAAAGGG+GGG 0.581279 4:+18627441 MsG0480019336.01.T01:CDS
GTACTAGTTTGATGATCCAA+AGG 0.581639 4:-18627182 None:intergenic
ATCAATAATCTTCAGTTGGG+AGG 0.582677 4:+18623807 MsG0480019336.01.T01:CDS
ATTTGATAGCAAAAGCTCTA+GGG 0.584132 4:+18627480 MsG0480019336.01.T01:CDS
TGTTCAAGGCGGAGAACGGA+GGG 0.587301 4:+18627385 MsG0480019336.01.T01:CDS
TTCTACCTCTAGATGAAGAA+GGG 0.590516 4:-18628363 None:intergenic
GATTGATAATGGTAAAGTGG+AGG 0.594410 4:+18627511 MsG0480019336.01.T01:CDS
TTGAATCACATGTGTCGTGT+TGG 0.594494 4:-18626703 None:intergenic
TATGGACATGGAAATGGCAG+CGG 0.597183 4:+18627716 MsG0480019336.01.T01:CDS
ACATGTGTCGTGTTGGACAC+CGG 0.603183 4:-18626696 None:intergenic
GCATACCTGATCTGTTCTCA+GGG 0.603401 4:-18623844 None:intergenic
TGGCAGCGGTGATTGTCAGA+TGG 0.610365 4:+18627730 MsG0480019336.01.T01:CDS
ACGATGCTGATCAGGAGGAA+GGG 0.611332 4:+18627417 MsG0480019336.01.T01:CDS
GCAGAACGATGCTGATCAGG+AGG 0.613237 4:+18627412 MsG0480019336.01.T01:CDS
GATAGCAAAAGCTCTAGGGA+TGG 0.616270 4:+18627484 MsG0480019336.01.T01:CDS
TCTTCATCTAGAGGTAGAAG+AGG 0.623511 4:+18628367 MsG0480019336.01.T01:CDS
AGACAGAAGTTGCTAACCCA+AGG 0.623915 4:+18627815 MsG0480019336.01.T01:CDS
GGATTTCTAGCAACAGCAGG+AGG 0.625375 4:-18628160 None:intergenic
TCGAGAGCGAGGCAGCGTCG+GGG 0.626763 4:+18627296 MsG0480019336.01.T01:CDS
GCGTTCATTTGATTCTATGT+TGG 0.627040 4:+18627211 MsG0480019336.01.T01:CDS
ATAGTTGAAAGTGTGAAAGG+GGG 0.631256 4:+18627440 MsG0480019336.01.T01:CDS
ATGTTCAAGGCGGAGAACGG+AGG 0.631903 4:+18627384 MsG0480019336.01.T01:CDS
ACAACACCTGATAGAAACAA+TGG 0.635569 4:+18627932 MsG0480019336.01.T01:CDS
AAGCAATTACTTCGAGAGCG+AGG 0.636181 4:+18627285 MsG0480019336.01.T01:CDS
ATCAATGGTCACAATACAGG+AGG 0.640899 4:+18628121 MsG0480019336.01.T01:CDS
ATGTCCTGTTTGTAAAGGGG+AGG 0.641102 4:+18627667 MsG0480019336.01.T01:CDS
ACAGACAATAATGAAAATGG+TGG 0.644525 4:+18627980 MsG0480019336.01.T01:CDS
TCAAGGCGGAGAACGGAGGG+AGG 0.657689 4:+18627388 MsG0480019336.01.T01:CDS
GGAATGTCCTGTTTGTAAAG+GGG 0.658869 4:+18627664 MsG0480019336.01.T01:CDS
CTATTGTCCAAAGTATTCGG+CGG 0.665724 4:+18627852 MsG0480019336.01.T01:CDS
CTAGGTGCCTTAGGTCGAGG+AGG 0.679868 4:-18627779 None:intergenic
GTATGCGTATTCGAAAGCAA+AGG 0.694045 4:+18627643 MsG0480019336.01.T01:CDS
TACGATAACTGATAGAAACA+CGG 0.706100 4:-18627623 None:intergenic
TGAATCCGAGAGGAGTTCGG+CGG 0.720440 4:-18627323 None:intergenic
ATTGGTTATCTGAATCCGAG+AGG 0.732391 4:-18627333 None:intergenic
ACAGCAGATGATGTTCAAGG+CGG 0.755121 4:+18627374 MsG0480019336.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTATTAAAATTAAGTA+AGG + Chr4:18625917-18625936 MsG0480019336.01.T01:intron 10.0%
!! ATATAAAAATATGTTGTTAA+TGG + Chr4:18626892-18626911 MsG0480019336.01.T01:intron 10.0%
!! TATAAAAATATGTTGTTAAT+GGG + Chr4:18626893-18626912 MsG0480019336.01.T01:intron 10.0%
!!! AAAAATGTTAAATATGTTTT+TGG - Chr4:18625975-18625994 None:intergenic 10.0%
!!! ACTTATCTTTTAATTTTTTT+AGG + Chr4:18625434-18625453 MsG0480019336.01.T01:intron 10.0%
!!! ATATAAAAATATGTTGTTTA+TGG + Chr4:18627096-18627115 MsG0480019336.01.T01:CDS 10.0%
!!! CTTATCTTTTAATTTTTTTA+GGG + Chr4:18625435-18625454 MsG0480019336.01.T01:intron 10.0%
!!! TATAAAAATATGTTGTTTAT+GGG + Chr4:18627097-18627116 MsG0480019336.01.T01:CDS 10.0%
!!! TTTTATTTTTATTTTTGCTA+GGG - Chr4:18626054-18626073 None:intergenic 10.0%
!!! TTTTTATTTTTATTTTTGCT+AGG - Chr4:18626055-18626074 None:intergenic 10.0%
!! AAAAGCTATTAAAATAAGTA+AGG - Chr4:18625509-18625528 None:intergenic 15.0%
!! AAGATATAAGTAACAAAATA+TGG - Chr4:18625698-18625717 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - Chr4:18625580-18625599 None:intergenic 15.0%
!! TTGAAAAATTTAAGAGTTTA+AGG + Chr4:18625827-18625846 MsG0480019336.01.T01:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + Chr4:18625856-18625875 MsG0480019336.01.T01:intron 15.0%
!!! AAATTTTTGCGATATTTTTT+CGG - Chr4:18625664-18625683 None:intergenic 15.0%
!!! CTAAGTAAATTTTTTTTGTA+GGG + Chr4:18625888-18625907 MsG0480019336.01.T01:intron 15.0%
!!! GATTTTAGATAGATTTTTTT+TGG - Chr4:18625386-18625405 None:intergenic 15.0%
!!! GTTGTTTTTTAATTTGTATT+AGG + Chr4:18626859-18626878 MsG0480019336.01.T01:intron 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + Chr4:18625855-18625874 MsG0480019336.01.T01:intron 15.0%
!!! TCTAAGTAAATTTTTTTTGT+AGG + Chr4:18625887-18625906 MsG0480019336.01.T01:intron 15.0%
!!! TTTTAGATAGATTTTGAAAT+TGG - Chr4:18625354-18625373 None:intergenic 15.0%
!! AACAAAACAACAAACAAAAT+CGG + Chr4:18626116-18626135 MsG0480019336.01.T01:intron 20.0%
!! ATAGAAGAAGAAAACATTAT+AGG + Chr4:18625127-18625146 MsG0480019336.01.T01:intron 20.0%
!! ATTACATAAGGAAATGAATT+TGG - Chr4:18623958-18623977 None:intergenic 20.0%
!! CTTTGATTGTAATATTTGTT+TGG + Chr4:18627550-18627569 MsG0480019336.01.T01:CDS 20.0%
!! GAACTAAAATACTCTATTAT+AGG + Chr4:18625153-18625172 MsG0480019336.01.T01:intron 20.0%
!! GATAAAAATGAGTTTAAATG+TGG + Chr4:18625199-18625218 MsG0480019336.01.T01:intron 20.0%
!!! CATTTTATGAAAAGTTATGA+TGG - Chr4:18624529-18624548 None:intergenic 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + Chr4:18625610-18625629 MsG0480019336.01.T01:intron 20.0%
!!! TCTCTTTATTTTGACTAATT+TGG - Chr4:18625294-18625313 None:intergenic 20.0%
!!! TTAGATAGATTTTTTTTGGT+GGG - Chr4:18625382-18625401 None:intergenic 20.0%
!!! TTTAGATAGATTTTTTTTGG+TGG - Chr4:18625383-18625402 None:intergenic 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG + Chr4:18625451-18625470 MsG0480019336.01.T01:intron 20.0%
! AAACAAATTTGGATTGAGTA+AGG - Chr4:18625569-18625588 None:intergenic 25.0%
! AGTTTGAAAATATGAATCAC+CGG + Chr4:18626355-18626374 MsG0480019336.01.T01:intron 25.0%
! ATAATATAACATCTTGTCGA+TGG - Chr4:18624425-18624444 None:intergenic 25.0%
! ATCGACAAGATGTTATATTA+TGG + Chr4:18624424-18624443 MsG0480019336.01.T01:intron 25.0%
! ATCGATTGAACATTATGTAA+TGG + Chr4:18624053-18624072 MsG0480019336.01.T01:intron 25.0%
! ATTATTCCAATTTATGGACA+TGG + Chr4:18627704-18627723 MsG0480019336.01.T01:CDS 25.0%
! GGATAAACTTGAAAAAAAAG+GGG + Chr4:18627118-18627137 MsG0480019336.01.T01:CDS 25.0%
! GGGATAAACTTGAAAAAAAA+GGG + Chr4:18627117-18627136 MsG0480019336.01.T01:CDS 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + Chr4:18625634-18625653 MsG0480019336.01.T01:intron 25.0%
! TGGGATAAACTTGAAAAAAA+AGG + Chr4:18627116-18627135 MsG0480019336.01.T01:CDS 25.0%
! TTATCAACATTCCTACTTAA+AGG - Chr4:18628280-18628299 None:intergenic 25.0%
! TTCATTTCCTTATGTAATAC+TGG + Chr4:18623960-18623979 MsG0480019336.01.T01:intron 25.0%
!! AACTTTTCATAAAATGTCTC+TGG + Chr4:18624533-18624552 MsG0480019336.01.T01:intron 25.0%
!! AATGTTTTCTTCTTCTATAG+TGG - Chr4:18625125-18625144 None:intergenic 25.0%
!! ATGTTTTCGATGAAATATTG+AGG - Chr4:18624088-18624107 None:intergenic 25.0%
!! ATTATTGATTGGAATATTCG+AGG - Chr4:18623796-18623815 None:intergenic 25.0%
!!! GGTGATTGCTTTATTTAATT+AGG - Chr4:18625333-18625352 None:intergenic 25.0%
AAAAAGTAGACAAACAAGAG+AGG - Chr4:18624393-18624412 None:intergenic 30.0%
AAAATGAAAGCGAAATGGAA+AGG - Chr4:18626227-18626246 None:intergenic 30.0%
AAAGGAAAAAAGAGTGAAGA+AGG - Chr4:18626209-18626228 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - Chr4:18625494-18625513 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + Chr4:18625932-18625951 MsG0480019336.01.T01:intron 30.0%
ACAAACTCCCTATTTAACTA+AGG - Chr4:18623895-18623914 None:intergenic 30.0%
ACAGACAATAATGAAAATGG+TGG + Chr4:18627980-18627999 MsG0480019336.01.T01:CDS 30.0%
ACGATATCTATGGAAGAATA+TGG + Chr4:18624915-18624934 MsG0480019336.01.T01:intron 30.0%
AGAACTCTATATGAAATAGC+AGG - Chr4:18624642-18624661 None:intergenic 30.0%
AGAGAAAGAGAGAGTAATAT+AGG + Chr4:18626503-18626522 MsG0480019336.01.T01:intron 30.0%
AGGTTCTACGTTTATTTGAA+TGG - Chr4:18624755-18624774 None:intergenic 30.0%
ATCAGCATTAAATTCTGCAA+TGG + Chr4:18628060-18628079 MsG0480019336.01.T01:CDS 30.0%
ATGAGTTTAAATGTGGTAGA+AGG + Chr4:18625206-18625225 MsG0480019336.01.T01:intron 30.0%
ATGGGATAAACTCGAAAAAA+AGG + Chr4:18626911-18626930 MsG0480019336.01.T01:intron 30.0%
ATTCAGATAACCAATGTTAC+AGG + Chr4:18627341-18627360 MsG0480019336.01.T01:CDS 30.0%
ATTGATCTGAGAGAATACTT+CGG - Chr4:18626581-18626600 None:intergenic 30.0%
CAAAAGAAAAAGCTAAGAAC+TGG - Chr4:18626258-18626277 None:intergenic 30.0%
CAGACAGACAATAATGAAAA+TGG + Chr4:18627977-18627996 MsG0480019336.01.T01:CDS 30.0%
CCAATCAATAATCTTCAGTT+GGG + Chr4:18623804-18623823 MsG0480019336.01.T01:CDS 30.0%
CCTGAAGCATAAAAAATAGA+GGG + Chr4:18625234-18625253 MsG0480019336.01.T01:intron 30.0%
GACAGATATTCAGAAGATTA+TGG - Chr4:18624009-18624028 None:intergenic 30.0%
GACCATTGATATATGATTCA+AGG - Chr4:18628111-18628130 None:intergenic 30.0%
GACCTTGAATCATATATCAA+TGG + Chr4:18628106-18628125 MsG0480019336.01.T01:CDS 30.0%
GATATTCAGAAGATTATGGT+TGG - Chr4:18624005-18624024 None:intergenic 30.0%
GGAAAAAAATGAAAGCGAAA+TGG - Chr4:18626232-18626251 None:intergenic 30.0%
GTGCATGCAATATGAATTAT+AGG + Chr4:18626304-18626323 MsG0480019336.01.T01:intron 30.0%
TACAACTGATAGAAATGTAC+CGG + Chr4:18628327-18628346 MsG0480019336.01.T01:CDS 30.0%
TACGATAACTGATAGAAACA+CGG - Chr4:18627626-18627645 None:intergenic 30.0%
TATATCAATGGTCACAATAC+AGG + Chr4:18628118-18628137 MsG0480019336.01.T01:CDS 30.0%
TATGTTGGAAGAACTTGAAT+CGG + Chr4:18627226-18627245 MsG0480019336.01.T01:CDS 30.0%
TCAAGTTTAGATACGATTGT+GGG - Chr4:18624691-18624710 None:intergenic 30.0%
TCCAATCAATAATCTTCAGT+TGG + Chr4:18623803-18623822 MsG0480019336.01.T01:CDS 30.0%
TCCTGAAGCATAAAAAATAG+AGG + Chr4:18625233-18625252 MsG0480019336.01.T01:intron 30.0%
TCGATGTAGCAATACTTATT+TGG - Chr4:18625181-18625200 None:intergenic 30.0%
TCGGGTATTATTCCAATTTA+TGG + Chr4:18627698-18627717 MsG0480019336.01.T01:CDS 30.0%
TGGGATAAACTCGAAAAAAA+GGG + Chr4:18626912-18626931 MsG0480019336.01.T01:intron 30.0%
TTAGTTAAATAGGGAGTTTG+TGG + Chr4:18623894-18623913 MsG0480019336.01.T01:intron 30.0%
TTCAATTATGTCACTATCTC+AGG + Chr4:18626721-18626740 MsG0480019336.01.T01:CDS 30.0%
TTCGATTAAGATTATGCATG+AGG - Chr4:18625005-18625024 None:intergenic 30.0%
TTTCGTGCCTTAGTTAAATA+GGG + Chr4:18623885-18623904 MsG0480019336.01.T01:intron 30.0%
! ATGAAAAGTTATGATGGAAC+AGG - Chr4:18624523-18624542 None:intergenic 30.0%
! ATGATAATGTTGCTAAGAAC+AGG - Chr4:18624602-18624621 None:intergenic 30.0%
! ATTTGATAGCAAAAGCTCTA+GGG + Chr4:18627480-18627499 MsG0480019336.01.T01:CDS 30.0%
! CTTCTATTGTCCAAAGTATT+CGG + Chr4:18627849-18627868 MsG0480019336.01.T01:CDS 30.0%
! TACAAGGTCACAATTTTGTA+GGG - Chr4:18625478-18625497 None:intergenic 30.0%
! TCGGTTTCGTATATTTTCTT+CGG - Chr4:18627252-18627271 None:intergenic 30.0%
! TTACAAGGTCACAATTTTGT+AGG - Chr4:18625479-18625498 None:intergenic 30.0%
! TTTTAAATCCACCAATACCA+TGG + Chr4:18624560-18624579 MsG0480019336.01.T01:intron 30.0%
!! AGAGATTGATAATGGTAAAG+TGG + Chr4:18627508-18627527 MsG0480019336.01.T01:CDS 30.0%
!! TTCTTAGCTTTTTCTTTTGC+TGG + Chr4:18626259-18626278 MsG0480019336.01.T01:intron 30.0%
!!! ATAGATTTTTTTTGGTGGGA+TGG - Chr4:18625378-18625397 None:intergenic 30.0%
!!! CTCTTGTTTGTCTACTTTTT+CGG + Chr4:18624393-18624412 MsG0480019336.01.T01:intron 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - Chr4:18625537-18625556 None:intergenic 30.0%
!!! TACTGTTTCTGCGATTTTAT+CGG + Chr4:18624340-18624359 MsG0480019336.01.T01:intron 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - Chr4:18625538-18625557 None:intergenic 30.0%
!!! TGTTTTGTTTGATTACGAAG+AGG - Chr4:18626105-18626124 None:intergenic 30.0%
!!! TTTTTGCGATATTTTTTCGG+AGG - Chr4:18625661-18625680 None:intergenic 30.0%
AAGCATGTAAGGTTAACCTT+CGG - Chr4:18624964-18624983 None:intergenic 35.0%
AAGCTCTCTTTCTATATGTC+TGG + Chr4:18624203-18624222 MsG0480019336.01.T01:intron 35.0%
AAGGAATGTCCTGTTTGTAA+AGG + Chr4:18627662-18627681 MsG0480019336.01.T01:CDS 35.0%
AATGGATGATGAGGAAGAAA+CGG - Chr4:18626177-18626196 None:intergenic 35.0%
ACAACACCTGATAGAAACAA+TGG + Chr4:18627932-18627951 MsG0480019336.01.T01:CDS 35.0%
ACGTTTATTTGAATGGACGA+AGG - Chr4:18624748-18624767 None:intergenic 35.0%
ACTCTATATGAAATAGCAGG+AGG - Chr4:18624639-18624658 None:intergenic 35.0%
AGACATATAGAAAGAGAGCT+TGG - Chr4:18624204-18624223 None:intergenic 35.0%
AGAGAGAGTAATATAGGAGA+CGG + Chr4:18626509-18626528 MsG0480019336.01.T01:intron 35.0%
AGGAATGTCCTGTTTGTAAA+GGG + Chr4:18627663-18627682 MsG0480019336.01.T01:CDS 35.0%
ATCAATAATCTTCAGTTGGG+AGG + Chr4:18623807-18623826 MsG0480019336.01.T01:CDS 35.0%
CCAATTTATGGACATGGAAA+TGG + Chr4:18627710-18627729 MsG0480019336.01.T01:CDS 35.0%
CCATTTCCATGTCCATAAAT+TGG - Chr4:18627713-18627732 None:intergenic 35.0%
CCCAACTGAAGATTATTGAT+TGG - Chr4:18623807-18623826 None:intergenic 35.0%
CGAATTAACGGTAATAGAAG+CGG + Chr4:18625037-18625056 MsG0480019336.01.T01:intron 35.0%
CTCAAGTTTAGATACGATTG+TGG - Chr4:18624692-18624711 None:intergenic 35.0%
CTCCATATTATACACAACCT+TGG - Chr4:18627144-18627163 None:intergenic 35.0%
CTCTATATGAAATAGCAGGA+GGG - Chr4:18624638-18624657 None:intergenic 35.0%
CTTCGGATCTACTAACTATA+AGG - Chr4:18626564-18626583 None:intergenic 35.0%
CTTCTATTACCGTTAATTCG+TGG - Chr4:18625037-18625056 None:intergenic 35.0%
CTTTCGTGCCTTAGTTAAAT+AGG + Chr4:18623884-18623903 MsG0480019336.01.T01:intron 35.0%
GAAAAAGCTAAGAACTGGAT+CGG - Chr4:18626253-18626272 None:intergenic 35.0%
GAATTAACGGTAATAGAAGC+GGG + Chr4:18625038-18625057 MsG0480019336.01.T01:intron 35.0%
GCGTTCATTTGATTCTATGT+TGG + Chr4:18627211-18627230 MsG0480019336.01.T01:CDS 35.0%
GGGATAAACTCGAAAAAAAG+GGG + Chr4:18626913-18626932 MsG0480019336.01.T01:intron 35.0%
GTCAAGGTTGAGTATAATAC+TGG + Chr4:18626935-18626954 MsG0480019336.01.T01:intron 35.0%
GTTGCTAAGAACAGGTTATT+TGG - Chr4:18624594-18624613 None:intergenic 35.0%
GTTGCTAGAAATCCAACTTT+AGG + Chr4:18628169-18628188 MsG0480019336.01.T01:CDS 35.0%
TATGCAACGACATATGATGT+GGG + Chr4:18624108-18624127 MsG0480019336.01.T01:intron 35.0%
TCAAATAAACGTAGAACCTC+AGG + Chr4:18624756-18624775 MsG0480019336.01.T01:intron 35.0%
TGTCTAATACTCTCAACTCT+AGG - Chr4:18627800-18627819 None:intergenic 35.0%
TTAGAGGATCTAATGCCTTA+TGG + Chr4:18624290-18624309 MsG0480019336.01.T01:intron 35.0%
TTATGCAACGACATATGATG+TGG + Chr4:18624107-18624126 MsG0480019336.01.T01:intron 35.0%
TTCCCTTTCTCAACTAGAAT+GGG + Chr4:18624367-18624386 MsG0480019336.01.T01:intron 35.0%
TTCTACCTCTAGATGAAGAA+GGG - Chr4:18628366-18628385 None:intergenic 35.0%
! AAAGTTATGATGGAACAGGA+AGG - Chr4:18624519-18624538 None:intergenic 35.0%
! ATAAGGCATTAGATCCTCTA+AGG - Chr4:18624291-18624310 None:intergenic 35.0%
! ATAGTTGAAAGTGTGAAAGG+GGG + Chr4:18627440-18627459 MsG0480019336.01.T01:CDS 35.0%
! CAAGTCTAGAACACTATGAA+AGG - Chr4:18625793-18625812 None:intergenic 35.0%
! CATTTGATAGCAAAAGCTCT+AGG + Chr4:18627479-18627498 MsG0480019336.01.T01:CDS 35.0%
! CTTCTGTTTCTCCTTTAAGT+AGG + Chr4:18628266-18628285 MsG0480019336.01.T01:CDS 35.0%
! GATAGTTGAAAGTGTGAAAG+GGG + Chr4:18627439-18627458 MsG0480019336.01.T01:CDS 35.0%
! GGATAGTTGAAAGTGTGAAA+GGG + Chr4:18627438-18627457 MsG0480019336.01.T01:CDS 35.0%
! GTACTAGTTTGATGATCCAA+AGG - Chr4:18627185-18627204 None:intergenic 35.0%
! TAGAAGGTCGCGATTTTATA+GGG + Chr4:18625948-18625967 MsG0480019336.01.T01:intron 35.0%
! TATCAGGTGTTGTGCTATTA+GGG - Chr4:18627925-18627944 None:intergenic 35.0%
! TATGGAAGACTAATGGACAA+TGG - Chr4:18624878-18624897 None:intergenic 35.0%
! TATGGAGCTTGATTTGAATC+AGG + Chr4:18627157-18627176 MsG0480019336.01.T01:CDS 35.0%
! TCTATATGTCTGGAATCTGA+AGG + Chr4:18624213-18624232 MsG0480019336.01.T01:intron 35.0%
! TTAGAAGGTCGCGATTTTAT+AGG + Chr4:18625947-18625966 MsG0480019336.01.T01:intron 35.0%
! TTCTGCTGAAAGATTAGTTC+AGG + Chr4:18628084-18628103 MsG0480019336.01.T01:CDS 35.0%
!! AGAAGTGTCGATACTACAAA+GGG + Chr4:18626430-18626449 MsG0480019336.01.T01:intron 35.0%
!! CCATTAGTCTTCCATAGTTT+CGG + Chr4:18624882-18624901 MsG0480019336.01.T01:intron 35.0%
!! GATTGATAATGGTAAAGTGG+AGG + Chr4:18627511-18627530 MsG0480019336.01.T01:CDS 35.0%
!! GTTGATAATGTTGCTGTTAC+AGG + Chr4:18628292-18628311 MsG0480019336.01.T01:CDS 35.0%
!! TAATACTGGTGTTGATGTGT+CGG + Chr4:18626949-18626968 MsG0480019336.01.T01:intron 35.0%
!!! ACTGTTTCTGCGATTTTATC+GGG + Chr4:18624341-18624360 MsG0480019336.01.T01:intron 35.0%
!!! CCCTCTATTTTTTATGCTTC+AGG - Chr4:18625237-18625256 None:intergenic 35.0%
!!! GTTGTGGTCATTTGTTTTGT+TGG + Chr4:18627600-18627619 MsG0480019336.01.T01:CDS 35.0%
!!! TAGATCCTCTAAGGTTTTTG+AGG - Chr4:18624282-18624301 None:intergenic 35.0%
AACTCGAAAAAAAGGGGTCA+AGG + Chr4:18626919-18626938 MsG0480019336.01.T01:intron 40.0%
ACGAAAGCAAAAATCAGCGA+AGG - Chr4:18623871-18623890 None:intergenic 40.0%
ACTTGAAAAAAAAGGGGCCA+AGG + Chr4:18627124-18627143 MsG0480019336.01.T01:CDS 40.0%
AGAAACAGTACATGCAAGCT+TGG - Chr4:18624330-18624349 None:intergenic 40.0%
AGAAGAAGAAGATGCTCCTT+GGG - Chr4:18627834-18627853 None:intergenic 40.0%
AGTGTGTCTCCACGAATTAA+CGG + Chr4:18625025-18625044 MsG0480019336.01.T01:intron 40.0%
ATCAATGGTCACAATACAGG+AGG + Chr4:18628121-18628140 MsG0480019336.01.T01:CDS 40.0%
ATGCAACGACATATGATGTG+GGG + Chr4:18624109-18624128 MsG0480019336.01.T01:intron 40.0%
ATGGATGATGAGGAAGAAAC+GGG - Chr4:18626176-18626195 None:intergenic 40.0%
ATTGCCACAGGAATATTGGA+TGG - Chr4:18624667-18624686 None:intergenic 40.0%
ATTGGTTATCTGAATCCGAG+AGG - Chr4:18627336-18627355 None:intergenic 40.0%
CAAAGGGGATTAAGTGACTT+TGG + Chr4:18626446-18626465 MsG0480019336.01.T01:intron 40.0%
CAGATGGAAATGAAAGAAGC+CGG + Chr4:18627746-18627765 MsG0480019336.01.T01:CDS 40.0%
CAGCTTTGCAACGATATCTA+TGG + Chr4:18624905-18624924 MsG0480019336.01.T01:intron 40.0%
CATATAGAAAGAGAGCTTGG+AGG - Chr4:18624201-18624220 None:intergenic 40.0%
CCGAAACTATGGAAGACTAA+TGG - Chr4:18624885-18624904 None:intergenic 40.0%
CGCAATCTTCTTCTTCTTCT+TGG - Chr4:18628424-18628443 None:intergenic 40.0%
CGGATCTACTAACTATAAGG+CGG - Chr4:18626561-18626580 None:intergenic 40.0%
CTCTCGAAGTAATTGCTTCA+AGG - Chr4:18627283-18627302 None:intergenic 40.0%
CTTCCCTTTCTCAACTAGAA+TGG + Chr4:18624366-18624385 MsG0480019336.01.T01:intron 40.0%
CTTCTACCTCTAGATGAAGA+AGG - Chr4:18628367-18628386 None:intergenic 40.0%
GAAAATATGAATCACCGGCA+CGG + Chr4:18626360-18626379 MsG0480019336.01.T01:intron 40.0%
GATCTTATCAAAGACGTGTC+CGG + Chr4:18626677-18626696 MsG0480019336.01.T01:CDS 40.0%
GATTGGAATATTCGAGGAGT+CGG - Chr4:18623790-18623809 None:intergenic 40.0%
GGAATGTCCTGTTTGTAAAG+GGG + Chr4:18627664-18627683 MsG0480019336.01.T01:CDS 40.0%
GGATCTACTAACTATAAGGC+GGG - Chr4:18626560-18626579 None:intergenic 40.0%
GGCCAAGGTTGTGTATAATA+TGG + Chr4:18627139-18627158 MsG0480019336.01.T01:CDS 40.0%
GGGATGGAAGAGATTGATAA+TGG + Chr4:18627500-18627519 MsG0480019336.01.T01:CDS 40.0%
GGTGGATCCAGTATTACATA+AGG - Chr4:18623970-18623989 None:intergenic 40.0%
GTATGCGTATTCGAAAGCAA+AGG + Chr4:18627643-18627662 MsG0480019336.01.T01:CDS 40.0%
GTTATTTGGACACTATGCCA+TGG - Chr4:18624580-18624599 None:intergenic 40.0%
TAAAGGGGAGGTAACTGAAT+CGG + Chr4:18627679-18627698 MsG0480019336.01.T01:CDS 40.0%
TACCATGGAAATGGATGATG+AGG - Chr4:18626186-18626205 None:intergenic 40.0%
TAGAAGAAGAAGATGCTCCT+TGG - Chr4:18627835-18627854 None:intergenic 40.0%
TATGAAACCGCCGAATACTT+TGG - Chr4:18627862-18627881 None:intergenic 40.0%
TATGTAATACTGGATCCACC+AGG + Chr4:18623970-18623989 MsG0480019336.01.T01:intron 40.0%
TCACTATCTCAGGTTACTAC+TGG + Chr4:18626731-18626750 MsG0480019336.01.T01:CDS 40.0%
TCTTCATCTAGAGGTAGAAG+AGG + Chr4:18628367-18628386 MsG0480019336.01.T01:CDS 40.0%
TGAAAATGGTGGTTCTCAAC+AGG + Chr4:18627991-18628010 MsG0480019336.01.T01:CDS 40.0%
TGACCACAACATGTCAAAAC+AGG - Chr4:18627590-18627609 None:intergenic 40.0%
TGATTTGAATCAGGAGCCTT+TGG + Chr4:18627166-18627185 MsG0480019336.01.T01:CDS 40.0%
TGCAACCTCAAAAACCTTAG+AGG + Chr4:18624274-18624293 MsG0480019336.01.T01:intron 40.0%
TGCAGTTTCTCCTGTAACAT+TGG - Chr4:18627354-18627373 None:intergenic 40.0%
TGTTCAATCGATCCTCACAT+TGG - Chr4:18624045-18624064 None:intergenic 40.0%
TTCCTCATCATCCATTTCCA+TGG + Chr4:18626181-18626200 MsG0480019336.01.T01:intron 40.0%
TTGAATCACATGTGTCGTGT+TGG - Chr4:18626706-18626725 None:intergenic 40.0%
TTGCTTCAAGGTGTGTGATT+CGG - Chr4:18627271-18627290 None:intergenic 40.0%
! ATGCCTTATGGATTATCCCA+TGG + Chr4:18624302-18624321 MsG0480019336.01.T01:intron 40.0%
! CACAGTTAGTTTGAAACCTG+AGG - Chr4:18624775-18624794 None:intergenic 40.0%
! CGCACTCATTGTAAAAGCAT+TGG - Chr4:18624450-18624469 None:intergenic 40.0%
! CTATCAGGTGTTGTGCTATT+AGG - Chr4:18627926-18627945 None:intergenic 40.0%
! CTATTGTCCAAAGTATTCGG+CGG + Chr4:18627852-18627871 MsG0480019336.01.T01:CDS 40.0%
! GGGATAGTTGAAAGTGTGAA+AGG + Chr4:18627437-18627456 MsG0480019336.01.T01:CDS 40.0%
! GTATCGACACTTCTGATGAA+AGG - Chr4:18626424-18626443 None:intergenic 40.0%
! GTTCTCTTTTGCTTCTTACG+AGG - Chr4:18624823-18624842 None:intergenic 40.0%
! TAGTTGAAAGTGTGAAAGGG+GGG + Chr4:18627441-18627460 MsG0480019336.01.T01:CDS 40.0%
!! AAAGAGTGAAGAAGGTACCA+TGG - Chr4:18626201-18626220 None:intergenic 40.0%
!! CAGAAGTGTCGATACTACAA+AGG + Chr4:18626429-18626448 MsG0480019336.01.T01:intron 40.0%
!! CATAACCGAATTGGTGGATT+TGG + Chr4:18627878-18627897 MsG0480019336.01.T01:CDS 40.0%
!! GAAGTGTCGATACTACAAAG+GGG + Chr4:18626431-18626450 MsG0480019336.01.T01:intron 40.0%
!! GGCAAACCATTGTTTCTATC+AGG - Chr4:18627941-18627960 None:intergenic 40.0%
!! TCACGGATTAGAAGCATGTA+AGG - Chr4:18624975-18624994 None:intergenic 40.0%
!! TGAAGAAGGTACCATGGAAA+TGG - Chr4:18626195-18626214 None:intergenic 40.0%
!!! GATCCTGTTTTGACATGTTG+TGG + Chr4:18627584-18627603 MsG0480019336.01.T01:CDS 40.0%
AAAGGGGAGGTAACTGAATC+GGG + Chr4:18627680-18627699 MsG0480019336.01.T01:CDS 45.0%
AAAGTGTGAAAGGGGGGAAA+AGG + Chr4:18627447-18627466 MsG0480019336.01.T01:CDS 45.0%
AAGCAATTACTTCGAGAGCG+AGG + Chr4:18627285-18627304 MsG0480019336.01.T01:CDS 45.0%
AATCTTCAGTTGGGAGGTGA+CGG + Chr4:18623813-18623832 MsG0480019336.01.T01:CDS 45.0%
ACAGCAGATGATGTTCAAGG+CGG + Chr4:18627374-18627393 MsG0480019336.01.T01:CDS 45.0%
ACGAGGACTTGTGAACAGTA+TGG - Chr4:18624806-18624825 None:intergenic 45.0%
ACTCATAATACCCCCGACTT+AGG + Chr4:18624841-18624860 MsG0480019336.01.T01:intron 45.0%
AGACAGAAGTTGCTAACCCA+AGG + Chr4:18627815-18627834 MsG0480019336.01.T01:CDS 45.0%
AGGGGATTAAGTGACTTTGG+TGG + Chr4:18626449-18626468 MsG0480019336.01.T01:intron 45.0%
AGTTTGTGGAGCTTCTGTTG+AGG + Chr4:18623908-18623927 MsG0480019336.01.T01:intron 45.0%
ATCTGAATCCGAGAGGAGTT+CGG - Chr4:18627329-18627348 None:intergenic 45.0%
ATGATGTTCAAGGCGGAGAA+CGG + Chr4:18627381-18627400 MsG0480019336.01.T01:CDS 45.0%
ATGCATGAGGCTTATGCTCA+CGG - Chr4:18624992-18625011 None:intergenic 45.0%
ATGTCCTGTTTGTAAAGGGG+AGG + Chr4:18627667-18627686 MsG0480019336.01.T01:CDS 45.0%
CAAAGTCAGAAGCCAATGTG+AGG + Chr4:18624030-18624049 MsG0480019336.01.T01:intron 45.0%
CATGTAAGGTTAACCTTCGG+CGG - Chr4:18624961-18624980 None:intergenic 45.0%
CGAGGACTTGTGAACAGTAT+GGG - Chr4:18624805-18624824 None:intergenic 45.0%
CGGTTTCATAACCGAATTGG+TGG + Chr4:18627872-18627891 MsG0480019336.01.T01:CDS 45.0%
CTAGACCCTTCTTCATCTAG+AGG + Chr4:18628358-18628377 MsG0480019336.01.T01:CDS 45.0%
CTCATAATACCCCCGACTTA+GGG + Chr4:18624842-18624861 MsG0480019336.01.T01:intron 45.0%
CTCTCCATCCAATATTCCTG+TGG + Chr4:18624660-18624679 MsG0480019336.01.T01:intron 45.0%
GAAGGGTCTAGCAAACTAAC+CGG - Chr4:18628349-18628368 None:intergenic 45.0%
GAGCCATGGGATAATCCATA+AGG - Chr4:18624308-18624327 None:intergenic 45.0%
GCAACAGCAGATGATGTTCA+AGG + Chr4:18627371-18627390 MsG0480019336.01.T01:CDS 45.0%
GCATACCTGATCTGTTCTCA+GGG - Chr4:18623847-18623866 None:intergenic 45.0%
GCTCTCCAAATCCACCAATT+CGG - Chr4:18627886-18627905 None:intergenic 45.0%
GGATTAAGTGACTTTGGTGG+CGG + Chr4:18626452-18626471 MsG0480019336.01.T01:intron 45.0%
GGGAATTGCCACAGGAATAT+TGG - Chr4:18624671-18624690 None:intergenic 45.0%
GTAAAGTGGAGGAGAGTAGT+GGG + Chr4:18627522-18627541 MsG0480019336.01.T01:CDS 45.0%
GTAGCAGCAACACCTAAAGT+TGG - Chr4:18628184-18628203 None:intergenic 45.0%
GTGGTTCTCAACAGGTTTCA+AGG + Chr4:18627999-18628018 MsG0480019336.01.T01:CDS 45.0%
GTTACCTCCCCTTTACAAAC+AGG - Chr4:18627674-18627693 None:intergenic 45.0%
GTTTCAAGGTTGCTAGAGCA+AGG + Chr4:18628013-18628032 MsG0480019336.01.T01:CDS 45.0%
TATGGACATGGAAATGGCAG+CGG + Chr4:18627716-18627735 MsG0480019336.01.T01:CDS 45.0%
TCCTTTGCACAAGCTATCAG+AGG - Chr4:18625085-18625104 None:intergenic 45.0%
TGGACACTATGCCATGGTAT+TGG - Chr4:18624574-18624593 None:intergenic 45.0%
TTCTGATGAAAGGCTTGTCC+TGG - Chr4:18626414-18626433 None:intergenic 45.0%
TTGCAAAGCTGCCGAAACTA+TGG - Chr4:18624896-18624915 None:intergenic 45.0%
! ACACTATGCCATGGTATTGG+TGG - Chr4:18624571-18624590 None:intergenic 45.0%
! ACAGGAAGGTTTTGCATTCC+CGG - Chr4:18624505-18624524 None:intergenic 45.0%
! AGGCCCATTCTAGTTGAGAA+AGG - Chr4:18624373-18624392 None:intergenic 45.0%
! CTGATAGCTTGTGCAAAGGA+CGG + Chr4:18625085-18625104 MsG0480019336.01.T01:intron 45.0%
! GATTAAGTGACTTTGGTGGC+GGG + Chr4:18626453-18626472 MsG0480019336.01.T01:intron 45.0%
! GGCCCATTCTAGTTGAGAAA+GGG - Chr4:18624372-18624391 None:intergenic 45.0%
! TCCTCTGATAGCTTGTGCAA+AGG + Chr4:18625081-18625100 MsG0480019336.01.T01:intron 45.0%
!! CGGGTTGTTGTTTGTTGAAG+CGG - Chr4:18626157-18626176 None:intergenic 45.0%
!! GATAGCAAAAGCTCTAGGGA+TGG + Chr4:18627484-18627503 MsG0480019336.01.T01:CDS 45.0%
!! GTTGGATTTCTAGCAACAGC+AGG - Chr4:18628166-18628185 None:intergenic 45.0%
!! GTTGTTGTTTGTTGAAGCGG+CGG - Chr4:18626154-18626173 None:intergenic 45.0%
!!! AAAATTTCTAAATTTTAAAT+AGG + Chr4:18625259-18625278 MsG0480019336.01.T01:intron 5.0%
AACGATGCTGATCAGGAGGA+AGG + Chr4:18627416-18627435 MsG0480019336.01.T01:CDS 50.0%
ACAACCTGCGCATTCTCTGT+TGG + Chr4:18624152-18624171 MsG0480019336.01.T01:intron 50.0%
ACAAGCTATCAGAGGACCTC+AGG - Chr4:18625077-18625096 None:intergenic 50.0%
ACATGCAAGCTTGGAGCCAT+GGG - Chr4:18624321-18624340 None:intergenic 50.0%
ACATGTGTCGTGTTGGACAC+CGG - Chr4:18626699-18626718 None:intergenic 50.0%
ACGATGCTGATCAGGAGGAA+GGG + Chr4:18627417-18627436 MsG0480019336.01.T01:CDS 50.0%
ACGATTGTGGGAATTGCCAC+AGG - Chr4:18624679-18624698 None:intergenic 50.0%
AGCTGCTGCAGCTACAGAAT+TGG - Chr4:18628248-18628267 None:intergenic 50.0%
ATCTTCAGTTGGGAGGTGAC+GGG + Chr4:18623814-18623833 MsG0480019336.01.T01:CDS 50.0%
CCCTCGTATTCAATCTCCAC+CGG + Chr4:18624483-18624502 MsG0480019336.01.T01:intron 50.0%
CCGGTGGAGATTGAATACGA+GGG - Chr4:18624486-18624505 None:intergenic 50.0%
CCTCGTATTCAATCTCCACC+GGG + Chr4:18624484-18624503 MsG0480019336.01.T01:intron 50.0%
CGCATACCTGATCTGTTCTC+AGG - Chr4:18623848-18623867 None:intergenic 50.0%
CGGCGGTTTCATAACCGAAT+TGG + Chr4:18627869-18627888 MsG0480019336.01.T01:CDS 50.0%
CGGTGGAGATTGAATACGAG+GGG - Chr4:18624485-18624504 None:intergenic 50.0%
CGTATGCTATCCCTAAGTCG+GGG - Chr4:18624855-18624874 None:intergenic 50.0%
CTCTCAACTCTAGGTGCCTT+AGG - Chr4:18627791-18627810 None:intergenic 50.0%
CTTCGGCGGAGACTAAACAA+GGG - Chr4:18624947-18624966 None:intergenic 50.0%
GCGTATGCTATCCCTAAGTC+GGG - Chr4:18624856-18624875 None:intergenic 50.0%
GGCGTATGCTATCCCTAAGT+CGG - Chr4:18624857-18624876 None:intergenic 50.0%
GGGTCTGAGAATTGTACCTG+AGG + Chr4:18625058-18625077 MsG0480019336.01.T01:intron 50.0%
GGTAAAGTGGAGGAGAGTAG+TGG + Chr4:18627521-18627540 MsG0480019336.01.T01:CDS 50.0%
GTATGCTATCCCTAAGTCGG+GGG - Chr4:18624854-18624873 None:intergenic 50.0%
TACATGCAAGCTTGGAGCCA+TGG - Chr4:18624322-18624341 None:intergenic 50.0%
TGATGTGGGGCTGTCTCAAT+AGG + Chr4:18624122-18624141 MsG0480019336.01.T01:intron 50.0%
TTCGGCGGAGACTAAACAAG+GGG - Chr4:18624946-18624965 None:intergenic 50.0%
! GCTTGTGCAAAGGACGGTTT+TGG + Chr4:18625091-18625110 MsG0480019336.01.T01:intron 50.0%
! TATGGTTGGTCCTGACAACC+TGG - Chr4:18623991-18624010 None:intergenic 50.0%
!! GGATTTCTAGCAACAGCAGG+AGG - Chr4:18628163-18628182 None:intergenic 50.0%
ACTCTAGGTGCCTTAGGTCG+AGG - Chr4:18627785-18627804 None:intergenic 55.0%
ACTGACACATGTCGGACACC+AGG + Chr4:18626393-18626412 MsG0480019336.01.T01:intron 55.0%
ACTGGATCCACCAGGTTGTC+AGG + Chr4:18623978-18623997 MsG0480019336.01.T01:intron 55.0%
ATGTTCAAGGCGGAGAACGG+AGG + Chr4:18627384-18627403 MsG0480019336.01.T01:CDS 55.0%
CCCGGTGGAGATTGAATACG+AGG - Chr4:18624487-18624506 None:intergenic 55.0%
CCTTCGGCGGAGACTAAACA+AGG - Chr4:18624948-18624967 None:intergenic 55.0%
GACACACACGACACAGACAC+TGG - Chr4:18626983-18627002 None:intergenic 55.0%
GCAGAACGATGCTGATCAGG+AGG + Chr4:18627412-18627431 MsG0480019336.01.T01:CDS 55.0%
GGAGCAGAACGATGCTGATC+AGG + Chr4:18627409-18627428 MsG0480019336.01.T01:CDS 55.0%
GTCGTGTGTCTGTGCTTCAG+AGG + Chr4:18626787-18626806 MsG0480019336.01.T01:intron 55.0%
GTCTGCGTGCGAGACTGAAT+AGG - Chr4:18627962-18627981 None:intergenic 55.0%
GTGGACCCTGAGAACAGATC+AGG + Chr4:18623839-18623858 MsG0480019336.01.T01:CDS 55.0%
TCTTCAGTTGGGAGGTGACG+GGG + Chr4:18623815-18623834 MsG0480019336.01.T01:CDS 55.0%
TGAATCCGAGAGGAGTTCGG+CGG - Chr4:18627326-18627345 None:intergenic 55.0%
TGGCAGCGGTGATTGTCAGA+TGG + Chr4:18627730-18627749 MsG0480019336.01.T01:CDS 55.0%
TGTTCAAGGCGGAGAACGGA+GGG + Chr4:18627385-18627404 MsG0480019336.01.T01:CDS 55.0%
! CCTTGTTTAGTCTCCGCCGA+AGG + Chr4:18624945-18624964 MsG0480019336.01.T01:intron 55.0%
! GCAGGAGGCACACGCATATA+AGG - Chr4:18624240-18624259 None:intergenic 55.0%
! GGAAGGTTTTGCATTCCCGG+TGG - Chr4:18624502-18624521 None:intergenic 55.0%
!! CCACGAGCACTGACACATGT+CGG + Chr4:18626385-18626404 MsG0480019336.01.T01:intron 55.0%
CCGACATGTGTCAGTGCTCG+TGG - Chr4:18626388-18626407 None:intergenic 60.0%
GCAGCCAACAGAGAATGCGC+AGG - Chr4:18624159-18624178 None:intergenic 60.0%
! CTTCAGTTGGGAGGTGACGG+GGG + Chr4:18623816-18623835 MsG0480019336.01.T01:CDS 60.0%
! GGTTGGTCCTGACAACCTGG+TGG - Chr4:18623988-18624007 None:intergenic 60.0%
!! TTCAGTTGGGAGGTGACGGG+GGG + Chr4:18623817-18623836 MsG0480019336.01.T01:CDS 60.0%
CAGTGCTCGTGGATCCGTGC+CGG - Chr4:18626377-18626396 None:intergenic 65.0%
CTTCGAGAGCGAGGCAGCGT+CGG + Chr4:18627294-18627313 MsG0480019336.01.T01:CDS 65.0%
GGTTGCCGCCGAACTCCTCT+CGG + Chr4:18627318-18627337 MsG0480019336.01.T01:CDS 65.0%
GTGTGCCTCCTGCTGCTGCT+GGG + Chr4:18624247-18624266 MsG0480019336.01.T01:intron 65.0%
TCAAGGCGGAGAACGGAGGG+AGG + Chr4:18627388-18627407 MsG0480019336.01.T01:CDS 65.0%
TGTGCCTCCTGCTGCTGCTG+GGG + Chr4:18624248-18624267 MsG0480019336.01.T01:intron 65.0%
TTCGAGAGCGAGGCAGCGTC+GGG + Chr4:18627295-18627314 MsG0480019336.01.T01:CDS 65.0%
AGCTCCCCAGCAGCAGCAGG+AGG - Chr4:18624255-18624274 None:intergenic 70.0%
CGTGTGCCTCCTGCTGCTGC+TGG + Chr4:18624246-18624265 MsG0480019336.01.T01:intron 70.0%
TCGAGAGCGAGGCAGCGTCG+GGG + Chr4:18627296-18627315 MsG0480019336.01.T01:CDS 70.0%
TGCAGCTCCCCAGCAGCAGC+AGG - Chr4:18624258-18624277 None:intergenic 70.0%
!! AGTTGGGAGGTGACGGGGGG+TGG + Chr4:18623820-18623839 MsG0480019336.01.T01:CDS 70.0%
! CGAGAGCGAGGCAGCGTCGG+GGG + Chr4:18627297-18627316 MsG0480019336.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 18623780 18628447 18623780 ID=MsG0480019336.01;Name=MsG0480019336.01
Chr4 mRNA 18623780 18628447 18623780 ID=MsG0480019336.01.T01;Parent=MsG0480019336.01;Name=MsG0480019336.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0|0|1|0.5|0.66|3|0|516
Chr4 exon 18623780 18623860 18623780 ID=MsG0480019336.01.T01:exon:10871;Parent=MsG0480019336.01.T01
Chr4 exon 18626656 18626762 18626656 ID=MsG0480019336.01.T01:exon:10872;Parent=MsG0480019336.01.T01
Chr4 exon 18627085 18628447 18627085 ID=MsG0480019336.01.T01:exon:10873;Parent=MsG0480019336.01.T01
Chr4 CDS 18623780 18623860 18623780 ID=MsG0480019336.01.T01:cds;Parent=MsG0480019336.01.T01
Chr4 CDS 18626656 18626762 18626656 ID=MsG0480019336.01.T01:cds;Parent=MsG0480019336.01.T01
Chr4 CDS 18627085 18628447 18627085 ID=MsG0480019336.01.T01:cds;Parent=MsG0480019336.01.T01
Gene Sequence

>MsG0480019336.01.T01

ATGGTTGCCGACTCCTCGAATATTCCAATCAATAATCTTCAGTTGGGAGGTGACGGGGGGTGGACCCTGAGAACAGATCAGCTTTGTAGCATTGACACTTTTGATCTTATCAAAGACGTGTCCGGTGTCCAACACGACACATGTGATTCAATTATGTCACTATCTCAGGTTACTACTGGTGTTGACGTGATTTTGAAACATATAAAAATATGTTGTTTATGGGATAAACTTGAAAAAAAAGGGGCCAAGGTTGTGTATAATATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCATCAAACTAGTACATCAGCGCGTTCATTTGATTCTATGTTGGAAGAACTTGAATCGGCCGAAGAAAATATACGAAACCGAATCACACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAACTCCTCTCGGATTCAGATAACCAATGTTACAGGAGAAACTGCAACAGCAGATGATGTTCAAGGCGGAGAACGGAGGGAGGAGCAGAACGATGCTGATCAGGAGGAAGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTCTAGGGATGGAAGAGATTGATAATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGCGTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGGGAGGTAACTGAATCGGGTATTATTCCAATTTATGGACATGGAAATGGCAGCGGTGATTGTCAGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTAATAGCACAACACCTGATAGAAACAATGGTTTGCCTATTCAGTCTCGCACGCAGACAGACAATAATGAAAATGGTGGTTCTCAACAGGTTTCAAGGTTGCTAGAGCAAGGAGCTTCTTCGTTTTCATCACTGTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCACAATACAGGAGGAAGCAGAGAGCAAAATCCTCCTGCTGTTGCTAGAAATCCAACTTTAGGTGTTGCTGCTACAAATCAGTCAGAGAGTCGTGCTCAAGATGTTGTTGATCTGACCAATTCTGTAGCTGCAGCAGCTTCTGTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGCTGTTACAGGCTCACAAATTCATACAACTGATAGAAATGTACCGGTTAGTTTGCTAGACCCTTCTTCATCTAGAGGTAGAAGAGGAAATCGCGCTTCAAGACAAGTTTCAAATGAACCAAGAAGAAGAAGAAGATTGCGATGA

Protein sequence

>MsG0480019336.01.T01

MVADSSNIPINNLQLGGDGGWTLRTDQLCSIDTFDLIKDVSGVQHDTCDSIMSLSQVTTGVDVILKHIKICCLWDKLEKKGAKVVYNMELDLNQEPLDHQTSTSARSFDSMLEELESAEENIRNRITHLEAITSRARQRRGLPPNSSRIQITNVTGETATADDVQGGERREEQNDADQEEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGSGDCQMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFHNRIGGFGEQVQLESPNSTTPDRNNGLPIQSRTQTDNNENGGSQQVSRLLEQGASSFSSLSSALNSAMDSAERLVQDLESYINGHNTGGSREQNPPAVARNPTLGVAATNQSESRAQDVVDLTNSVAAAASVSPLSRNVDNVAVTGSQIHTTDRNVPVSLLDPSSSRGRRGNRASRQVSNEPRRRRRLR*