Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022825.01.T01 | AFK44080.1 | 91.045 | 67 | 6 | 0 | 1 | 67 | 9 | 75 | 2.68E-37 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022825.01.T01 | Q9M146 | 85.075 | 67 | 10 | 0 | 1 | 67 | 293 | 359 | 1.32E-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022825.01.T01 | A0A4D6L5J9 | 92.537 | 67 | 5 | 0 | 1 | 67 | 461 | 527 | 4.09e-37 | 139 |
| MsG0480022825.01.T01 | I3SUY8 | 91.045 | 67 | 6 | 0 | 1 | 67 | 9 | 75 | 1.28e-37 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0480022825.01 | 0.817716 | 2.853822e-52 | 2.094234e-49 |
| MsG0080048152.01 | MsG0480022825.01 | 0.804723 | 1.883517e-49 | 9.783861e-47 |
| MsG0080048383.01 | MsG0480022825.01 | 0.809061 | 2.279669e-50 | 1.325028e-47 |
| MsG0080048856.01 | MsG0480022825.01 | 0.840540 | 8.179215e-58 | 1.168730e-54 |
| MsG0180000001.01 | MsG0480022825.01 | 0.815914 | 7.240941e-52 | 5.057640e-49 |
| MsG0180000023.01 | MsG0480022825.01 | 0.801550 | 8.539201e-49 | 4.089503e-46 |
| MsG0180000144.01 | MsG0480022825.01 | 0.818351 | 2.051495e-52 | 1.532032e-49 |
| MsG0180000145.01 | MsG0480022825.01 | 0.811113 | 8.236946e-51 | 5.055174e-48 |
| MsG0180000195.01 | MsG0480022825.01 | 0.804718 | 1.888616e-49 | 9.808799e-47 |
| MsG0180000334.01 | MsG0480022825.01 | 0.811425 | 7.045491e-51 | 4.359886e-48 |
| MsG0180000335.01 | MsG0480022825.01 | 0.815600 | 8.507319e-52 | 5.891794e-49 |
| MsG0180000470.01 | MsG0480022825.01 | 0.810453 | 1.144150e-50 | 6.899290e-48 |
| MsG0180000824.01 | MsG0480022825.01 | 0.801542 | 8.571293e-49 | 4.104114e-46 |
| MsG0180000836.01 | MsG0480022825.01 | 0.815956 | 7.087304e-52 | 4.956113e-49 |
| MsG0180001173.01 | MsG0480022825.01 | 0.818089 | 2.351566e-52 | 1.743263e-49 |
| MsG0180001687.01 | MsG0480022825.01 | 0.802792 | 4.741907e-49 | 2.343979e-46 |
| MsG0180002492.01 | MsG0480022825.01 | 0.825027 | 5.863699e-54 | 5.282916e-51 |
| MsG0180002901.01 | MsG0480022825.01 | 0.814223 | 1.719153e-51 | 1.146773e-48 |
| MsG0180003572.01 | MsG0480022825.01 | 0.831617 | 1.507847e-55 | 1.645078e-52 |
| MsG0180003920.01 | MsG0480022825.01 | 0.805364 | 1.383533e-49 | 7.305748e-47 |
| MsG0180003922.01 | MsG0480022825.01 | 0.801964 | 7.023103e-49 | 3.398786e-46 |
| MsG0180004481.01 | MsG0480022825.01 | 0.800482 | 1.411970e-48 | 6.581674e-46 |
| MsG0180004482.01 | MsG0480022825.01 | 0.805693 | 1.180287e-49 | 6.285716e-47 |
| MsG0180004854.01 | MsG0480022825.01 | 0.824033 | 1.005012e-53 | 8.799552e-51 |
| MsG0180004991.01 | MsG0480022825.01 | 0.804484 | 2.113133e-49 | 1.090796e-46 |
| MsG0180005049.01 | MsG0480022825.01 | 0.837718 | 4.406741e-57 | 5.774356e-54 |
| MsG0180005445.01 | MsG0480022825.01 | 0.824276 | 8.810381e-54 | 7.767287e-51 |
| MsG0180005524.01 | MsG0480022825.01 | 0.801934 | 7.124244e-49 | 3.445204e-46 |
| MsG0180005575.01 | MsG0480022825.01 | 0.831223 | 1.885164e-55 | 2.032713e-52 |
| MsG0180006224.01 | MsG0480022825.01 | 0.803775 | 2.967616e-49 | 1.504250e-46 |
| MsG0280006376.01 | MsG0480022825.01 | 0.811991 | 5.306316e-51 | 3.333274e-48 |
| MsG0280010980.01 | MsG0480022825.01 | 0.814667 | 1.371082e-51 | 9.256500e-49 |
| MsG0280011014.01 | MsG0480022825.01 | 0.830060 | 3.631896e-55 | 3.784747e-52 |
| MsG0280011388.01 | MsG0480022825.01 | 0.838759 | 2.375506e-57 | 3.213128e-54 |
| MsG0380011755.01 | MsG0480022825.01 | 0.808329 | 3.267803e-50 | 1.863207e-47 |
| MsG0380012067.01 | MsG0480022825.01 | 0.825460 | 4.630557e-54 | 4.223068e-51 |
| MsG0380012371.01 | MsG0480022825.01 | 0.804549 | 2.047892e-49 | 1.058903e-46 |
| MsG0380012471.01 | MsG0480022825.01 | 0.815793 | 7.706350e-52 | 5.365480e-49 |
| MsG0380013183.01 | MsG0480022825.01 | 0.814428 | 1.548382e-51 | 1.038699e-48 |
| MsG0380013475.01 | MsG0480022825.01 | 0.828683 | 7.844849e-55 | 7.853172e-52 |
| MsG0380013834.01 | MsG0480022825.01 | 0.813452 | 2.541301e-51 | 1.660324e-48 |
| MsG0480018479.01 | MsG0480022825.01 | 0.805501 | 1.295162e-49 | 6.862978e-47 |
| MsG0480018846.01 | MsG0480022825.01 | 0.800590 | 1.342080e-48 | 6.273187e-46 |
| MsG0480018894.01 | MsG0480022825.01 | 0.832732 | 7.992236e-56 | 9.011817e-53 |
| MsG0480019442.01 | MsG0480022825.01 | 0.813052 | 3.111397e-51 | 2.010581e-48 |
| MsG0480020780.01 | MsG0480022825.01 | 0.821328 | 4.280805e-53 | 3.472094e-50 |
| MsG0480020879.01 | MsG0480022825.01 | 0.828204 | 1.023490e-54 | 1.010438e-51 |
| MsG0480021195.01 | MsG0480022825.01 | 0.825317 | 5.007550e-54 | 4.548688e-51 |
| MsG0480021452.01 | MsG0480022825.01 | 0.816156 | 6.394259e-52 | 4.496190e-49 |
| MsG0480022115.01 | MsG0480022825.01 | 0.802616 | 5.155235e-49 | 2.536791e-46 |
| MsG0480022228.01 | MsG0480022825.01 | 0.825683 | 4.101790e-54 | 3.764949e-51 |
| MsG0480022514.01 | MsG0480022825.01 | 0.802705 | 4.942498e-49 | 2.437661e-46 |
| MsG0480022620.01 | MsG0480022825.01 | 0.823467 | 1.363487e-53 | 1.174943e-50 |
| MsG0480022696.01 | MsG0480022825.01 | 0.819439 | 1.160869e-52 | 8.933402e-50 |
| MsG0480022780.01 | MsG0480022825.01 | 0.801485 | 8.806100e-49 | 4.210495e-46 |
| MsG0480022825.01 | MsG0480023172.01 | 0.815768 | 7.807125e-52 | 5.431905e-49 |
| MsG0480022825.01 | MsG0480023221.01 | 0.802463 | 5.543147e-49 | 2.717076e-46 |
| MsG0480022825.01 | MsG0480023272.01 | 0.817274 | 3.590214e-52 | 2.602734e-49 |
| MsG0480022825.01 | MsG0480023307.01 | 0.815853 | 7.472961e-52 | 5.210856e-49 |
| MsG0480022825.01 | MsG0480023718.01 | 0.802009 | 6.875585e-49 | 3.331318e-46 |
| MsG0480022825.01 | MsG0580024339.01 | 0.823006 | 1.747345e-53 | 1.486336e-50 |
| MsG0480022825.01 | MsG0580024618.01 | 0.805118 | 1.557954e-49 | 8.174919e-47 |
| MsG0480022825.01 | MsG0580024819.01 | 0.811681 | 6.198018e-51 | 3.861067e-48 |
| MsG0480022825.01 | MsG0580027091.01 | 0.806955 | 6.397777e-50 | 3.518963e-47 |
| MsG0480022825.01 | MsG0580027320.01 | 0.823202 | 1.572214e-53 | 1.344736e-50 |
| MsG0480022825.01 | MsG0580027650.01 | 0.817621 | 2.999187e-52 | 2.195086e-49 |
| MsG0480022825.01 | MsG0580028517.01 | 0.807720 | 4.404439e-50 | 2.471241e-47 |
| MsG0480022825.01 | MsG0580029236.01 | 0.802345 | 5.863356e-49 | 2.865463e-46 |
| MsG0480022825.01 | MsG0580029729.01 | 0.811185 | 7.945179e-51 | 4.885373e-48 |
| MsG0480022825.01 | MsG0580029926.01 | 0.812916 | 3.332905e-51 | 2.145872e-48 |
| MsG0480022825.01 | MsG0680030667.01 | 0.806390 | 8.417905e-50 | 4.563368e-47 |
| MsG0480022825.01 | MsG0680031506.01 | 0.816992 | 4.154907e-52 | 2.989272e-49 |
| MsG0480022825.01 | MsG0680031507.01 | 0.815637 | 8.347524e-52 | 5.787065e-49 |
| MsG0480022825.01 | MsG0680031549.01 | 0.816665 | 4.918131e-52 | 3.506700e-49 |
| MsG0480022825.01 | MsG0680031628.01 | 0.834432 | 3.007346e-56 | 3.568396e-53 |
| MsG0480022825.01 | MsG0680031699.01 | 0.810789 | 9.677524e-51 | 5.888613e-48 |
| MsG0480022825.01 | MsG0680031964.01 | 0.817617 | 3.005831e-52 | 2.199674e-49 |
| MsG0480022825.01 | MsG0680031967.01 | 0.809260 | 2.065928e-50 | 1.207236e-47 |
| MsG0480022825.01 | MsG0680033392.01 | 0.811472 | 6.882222e-51 | 4.264127e-48 |
| MsG0480022825.01 | MsG0680033792.01 | 0.809363 | 1.963310e-50 | 1.150466e-47 |
| MsG0480022825.01 | MsG0680035475.01 | 0.810629 | 1.048185e-50 | 6.350654e-48 |
| MsG0480022825.01 | MsG0680035498.01 | 0.811334 | 7.375835e-51 | 4.552867e-48 |
| MsG0480022825.01 | MsG0680035658.01 | 0.800073 | 1.709985e-48 | 7.888737e-46 |
| MsG0480022825.01 | MsG0680035888.01 | 0.822524 | 2.262842e-53 | 1.898707e-50 |
| MsG0480022825.01 | MsG0780035979.01 | 0.816373 | 5.717675e-52 | 4.044291e-49 |
| MsG0480022825.01 | MsG0780036477.01 | 0.819195 | 1.319348e-52 | 1.008415e-49 |
| MsG0480022825.01 | MsG0780036663.01 | 0.808081 | 3.689483e-50 | 2.089843e-47 |
| MsG0480022825.01 | MsG0780036719.01 | 0.822178 | 2.721241e-53 | 2.260728e-50 |
| MsG0480022825.01 | MsG0780037054.01 | 0.829402 | 5.251663e-55 | 5.369672e-52 |
| MsG0480022825.01 | MsG0780037141.01 | 0.808253 | 3.392377e-50 | 1.930335e-47 |
| MsG0480022825.01 | MsG0780037240.01 | 0.818520 | 1.878284e-52 | 1.409182e-49 |
| MsG0480022825.01 | MsG0780038188.01 | 0.815665 | 8.230509e-52 | 5.709986e-49 |
| MsG0480022825.01 | MsG0780038443.01 | 0.819527 | 1.108470e-52 | 8.551538e-50 |
| MsG0480022825.01 | MsG0780038603.01 | 0.815795 | 7.698237e-52 | 5.360068e-49 |
| MsG0480022825.01 | MsG0780039170.01 | 0.813324 | 2.711186e-51 | 1.765056e-48 |
| MsG0480022825.01 | MsG0780039243.01 | 0.817637 | 2.974168e-52 | 2.177732e-49 |
| MsG0480022825.01 | MsG0780039423.01 | 0.805015 | 1.636837e-49 | 8.566101e-47 |
| MsG0480022825.01 | MsG0780039443.01 | 0.834131 | 3.577933e-56 | 4.206824e-53 |
| MsG0480022825.01 | MsG0780039570.01 | 0.805201 | 1.496608e-49 | 7.869776e-47 |
| MsG0480022825.01 | MsG0780040044.01 | 0.810931 | 9.019680e-51 | 5.509427e-48 |
| MsG0480022825.01 | MsG0780040529.01 | 0.803351 | 3.633212e-49 | 1.821620e-46 |
| MsG0480022825.01 | MsG0780040926.01 | 0.832860 | 7.428759e-56 | 8.408450e-53 |
| MsG0480022825.01 | MsG0780041016.01 | 0.825168 | 5.429006e-54 | 4.910973e-51 |
| MsG0480022825.01 | MsG0780041423.01 | 0.801986 | 6.950524e-49 | 3.365629e-46 |
| MsG0480022825.01 | MsG0780041440.01 | 0.812740 | 3.640990e-51 | 2.333550e-48 |
| MsG0480022825.01 | MsG0780041559.01 | 0.806725 | 7.155605e-50 | 3.912498e-47 |
| MsG0480022825.01 | MsG0880042128.01 | 0.811944 | 5.434884e-51 | 3.409608e-48 |
| MsG0480022825.01 | MsG0880042206.01 | 0.805831 | 1.103893e-49 | 5.899620e-47 |
| MsG0480022825.01 | MsG0880042311.01 | 0.815722 | 7.993839e-52 | 5.554674e-49 |
| MsG0480022825.01 | MsG0880042547.01 | 0.818948 | 1.501763e-52 | 1.140188e-49 |
| MsG0480022825.01 | MsG0880042760.01 | 0.821703 | 3.505924e-53 | 2.873686e-50 |
| MsG0480022825.01 | MsG0880042779.01 | 0.805522 | 1.281661e-49 | 6.795187e-47 |
| MsG0480022825.01 | MsG0880042829.01 | 0.823132 | 1.633032e-53 | 1.394061e-50 |
| MsG0480022825.01 | MsG0880043479.01 | 0.820640 | 6.164153e-53 | 4.904309e-50 |
| MsG0480022825.01 | MsG0880043480.01 | 0.840495 | 8.402866e-58 | 1.199062e-54 |
| MsG0480022825.01 | MsG0880043937.01 | 0.806347 | 8.598826e-50 | 4.656244e-47 |
| MsG0480022825.01 | MsG0880044075.01 | 0.805311 | 1.419237e-49 | 7.484115e-47 |
| MsG0480022825.01 | MsG0880044237.01 | 0.802060 | 6.710660e-49 | 3.255709e-46 |
| MsG0480022825.01 | MsG0880044415.01 | 0.802217 | 6.230428e-49 | 3.034770e-46 |
| MsG0480022825.01 | MsG0880044477.01 | 0.813021 | 3.160093e-51 | 2.040413e-48 |
| MsG0480022825.01 | MsG0880044542.01 | 0.814604 | 1.415705e-51 | 9.541966e-49 |
| MsG0480022825.01 | MsG0880044565.01 | 0.813518 | 2.458367e-51 | 1.608940e-48 |
| MsG0480022825.01 | MsG0880044782.01 | 0.814119 | 1.812337e-51 | 1.205560e-48 |
| MsG0480022825.01 | MsG0880045145.01 | 0.839048 | 1.999842e-57 | 2.728803e-54 |
| MsG0480022825.01 | MsG0880045294.01 | 0.803099 | 4.098099e-49 | 2.041415e-46 |
| MsG0480022825.01 | MsG0880045393.01 | 0.816920 | 4.312274e-52 | 3.096160e-49 |
| MsG0480022825.01 | MsG0880045965.01 | 0.840623 | 7.777969e-58 | 1.114279e-54 |
| MsG0480022825.01 | MsG0880046074.01 | 0.802684 | 4.992055e-49 | 2.460707e-46 |
| MsG0480022825.01 | MsG0880046762.01 | 0.804908 | 1.723720e-49 | 8.996849e-47 |
| MsG0480022825.01 | MsG0880047470.01 | 0.820900 | 5.371235e-53 | 4.305050e-50 |
| MsG0480022825.01 | MsG0880047472.01 | 0.840277 | 9.578861e-58 | 1.357628e-54 |
| MsG0480022825.01 | MsG0880047473.01 | 0.813396 | 2.614514e-51 | 1.705501e-48 |
| MsG0380015300.01 | MsG0480022825.01 | 0.809958 | 1.462526e-50 | 8.706148e-48 |
| MsG0380015332.01 | MsG0480022825.01 | 0.803731 | 3.030558e-49 | 1.534450e-46 |
| MsG0380015435.01 | MsG0480022825.01 | 0.807544 | 4.798705e-50 | 2.680161e-47 |
| MsG0380015555.01 | MsG0480022825.01 | 0.803481 | 3.415029e-49 | 1.718076e-46 |
| MsG0380015831.01 | MsG0480022825.01 | 0.809541 | 1.798260e-50 | 1.058712e-47 |
| MsG0380015944.01 | MsG0480022825.01 | 0.807048 | 6.114004e-50 | 3.371023e-47 |
| MsG0380016131.01 | MsG0480022825.01 | 0.829029 | 6.469590e-55 | 6.541736e-52 |
| MsG0380016247.01 | MsG0480022825.01 | 0.833477 | 5.214848e-56 | 6.012375e-53 |
| MsG0380016505.01 | MsG0480022825.01 | 0.813611 | 2.345373e-51 | 1.538881e-48 |
| MsG0380016970.01 | MsG0480022825.01 | 0.823008 | 1.745556e-53 | 1.484905e-50 |
| MsG0380016985.01 | MsG0480022825.01 | 0.802257 | 6.112560e-49 | 2.980486e-46 |
| MsG0380017431.01 | MsG0480022825.01 | 0.814623 | 1.402260e-51 | 9.456074e-49 |
| MsG0480018278.01 | MsG0480022825.01 | 0.801583 | 8.407705e-49 | 4.029835e-46 |
| MsG0280007452.01 | MsG0480022825.01 | 0.819343 | 1.220953e-52 | 9.369624e-50 |
| MsG0280007491.01 | MsG0480022825.01 | 0.805350 | 1.392482e-49 | 7.350370e-47 |
| MsG0280007764.01 | MsG0480022825.01 | 0.801068 | 1.072157e-48 | 5.072769e-46 |
| MsG0280007790.01 | MsG0480022825.01 | 0.801434 | 9.020145e-49 | 4.307278e-46 |
| MsG0280007955.01 | MsG0480022825.01 | 0.801789 | 7.628502e-49 | 3.675550e-46 |
| MsG0280008614.01 | MsG0480022825.01 | 0.814390 | 1.578714e-51 | 1.057995e-48 |
| MsG0280008615.01 | MsG0480022825.01 | 0.826022 | 3.407473e-54 | 3.158013e-51 |
| MsG0280008738.01 | MsG0480022825.01 | 0.800907 | 1.156419e-48 | 5.449313e-46 |
| MsG0280008885.01 | MsG0480022825.01 | 0.825773 | 3.904285e-54 | 3.592895e-51 |
| MsG0280008909.01 | MsG0480022825.01 | 0.818986 | 1.472088e-52 | 1.118863e-49 |
| MsG0280009748.01 | MsG0480022825.01 | 0.802453 | 5.570657e-49 | 2.729840e-46 |
| MsG0280010002.01 | MsG0480022825.01 | 0.801780 | 7.662332e-49 | 3.690916e-46 |
| MsG0280010176.01 | MsG0480022825.01 | 0.804665 | 1.937220e-49 | 1.004702e-46 |
| MsG0280010287.01 | MsG0480022825.01 | 0.810064 | 1.387898e-50 | 8.284622e-48 |
| MsG0280010491.01 | MsG0480022825.01 | 0.811848 | 5.702758e-51 | 3.568413e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022825.01.T01 | MTR_4g094738 | 94.030 | 67 | 4 | 0 | 1 | 67 | 291 | 357 | 1.17e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022825.01.T01 | AT4G01220 | 85.075 | 67 | 10 | 0 | 1 | 67 | 293 | 359 | 1.35e-35 | 122 |
| MsG0480022825.01.T01 | AT1G56550 | 73.134 | 67 | 18 | 0 | 1 | 67 | 284 | 350 | 7.87e-34 | 118 |
| MsG0480022825.01.T01 | AT1G56550 | 73.134 | 67 | 18 | 0 | 1 | 67 | 284 | 350 | 6.11e-33 | 116 |
| MsG0480022825.01.T01 | AT4G01770 | 76.119 | 67 | 16 | 0 | 1 | 67 | 294 | 360 | 1.07e-32 | 115 |
| MsG0480022825.01.T01 | AT4G01750 | 73.134 | 67 | 18 | 0 | 1 | 67 | 300 | 366 | 4.66e-32 | 113 |
Find 23 sgRNAs with CRISPR-Local
Find 21 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAAGATAAAGCGATTT+CGG | 0.225160 | 4:+77130503 | MsG0480022825.01.T01:CDS |
| CTAAAGGCGACTCCTGTTTA+TGG | 0.267123 | 4:-77130552 | None:intergenic |
| AAAGAAGATAAAGCGATTTC+GGG | 0.287201 | 4:+77130504 | MsG0480022825.01.T01:CDS |
| CATAAACAGGAGTCGCCTTT+AGG | 0.356010 | 4:+77130553 | MsG0480022825.01.T01:CDS |
| GATTTCGGGACTATGGTCTA+TGG | 0.390952 | 4:+77130518 | MsG0480022825.01.T01:CDS |
| ATTCATAACAACTATATAGT+TGG | 0.406968 | 4:+77130475 | MsG0480022825.01.T01:CDS |
| CCACAGTCGGCATTCCCTAC+AGG | 0.456724 | 4:+77130394 | MsG0480022825.01.T01:CDS |
| ATAAAGCGATTTCGGGACTA+TGG | 0.457062 | 4:+77130511 | MsG0480022825.01.T01:CDS |
| GTTGGTGGATGACCATAAAC+AGG | 0.476751 | 4:+77130540 | MsG0480022825.01.T01:CDS |
| TTGAAATATAATCCGCCTGT+AGG | 0.522041 | 4:-77130409 | None:intergenic |
| GGACTATGGTCTATGGTTGG+TGG | 0.522612 | 4:+77130525 | MsG0480022825.01.T01:CDS |
| ATTGTACTTGCTTCCACAGT+CGG | 0.528024 | 4:+77130381 | None:intergenic |
| CAAGAACAAAACATGGGGTA+AGG | 0.531616 | 4:+77130429 | MsG0480022825.01.T01:CDS |
| TGAAATATAATCCGCCTGTA+GGG | 0.540315 | 4:-77130408 | None:intergenic |
| TTGAGTCATAATCCACCTAA+AGG | 0.548427 | 4:-77130568 | None:intergenic |
| TCGGGACTATGGTCTATGGT+TGG | 0.555493 | 4:+77130522 | MsG0480022825.01.T01:CDS |
| AAACAGGAGTCGCCTTTAGG+TGG | 0.564100 | 4:+77130556 | MsG0480022825.01.T01:CDS |
| ACATGGGGTAAGGAAACTAA+AGG | 0.581819 | 4:+77130439 | MsG0480022825.01.T01:CDS |
| TATATTTCAAGAACAAAACA+TGG | 0.591014 | 4:+77130422 | MsG0480022825.01.T01:CDS |
| ATATTTCAAGAACAAAACAT+GGG | 0.618137 | 4:+77130423 | MsG0480022825.01.T01:CDS |
| CCTGTAGGGAATGCCGACTG+TGG | 0.638851 | 4:-77130394 | None:intergenic |
| CAGTCGGCATTCCCTACAGG+CGG | 0.668870 | 4:+77130397 | MsG0480022825.01.T01:CDS |
| TATTTCAAGAACAAAACATG+GGG | 0.687765 | 4:+77130424 | MsG0480022825.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTCAAGAACAAAACAT+GGG | + | Chr4:77130423-77130442 | MsG0480022825.01.T01:CDS | 20.0% |
| !! | ATTCATAACAACTATATAGT+TGG | + | Chr4:77130475-77130494 | MsG0480022825.01.T01:CDS | 20.0% |
| !! | TATATTTCAAGAACAAAACA+TGG | + | Chr4:77130422-77130441 | MsG0480022825.01.T01:CDS | 20.0% |
| ! | AAAAGAAGATAAAGCGATTT+CGG | + | Chr4:77130503-77130522 | MsG0480022825.01.T01:CDS | 25.0% |
| ! | TATTTCAAGAACAAAACATG+GGG | + | Chr4:77130424-77130443 | MsG0480022825.01.T01:CDS | 25.0% |
| AAAGAAGATAAAGCGATTTC+GGG | + | Chr4:77130504-77130523 | MsG0480022825.01.T01:CDS | 30.0% | |
| TGAAATATAATCCGCCTGTA+GGG | - | Chr4:77130411-77130430 | None:intergenic | 35.0% | |
| TTGAAATATAATCCGCCTGT+AGG | - | Chr4:77130412-77130431 | None:intergenic | 35.0% | |
| ACATGGGGTAAGGAAACTAA+AGG | + | Chr4:77130439-77130458 | MsG0480022825.01.T01:CDS | 40.0% | |
| ATAAAGCGATTTCGGGACTA+TGG | + | Chr4:77130511-77130530 | MsG0480022825.01.T01:CDS | 40.0% | |
| CAAGAACAAAACATGGGGTA+AGG | + | Chr4:77130429-77130448 | MsG0480022825.01.T01:CDS | 40.0% | |
| CATAAACAGGAGTCGCCTTT+AGG | + | Chr4:77130553-77130572 | MsG0480022825.01.T01:CDS | 45.0% | |
| CTAAAGGCGACTCCTGTTTA+TGG | - | Chr4:77130555-77130574 | None:intergenic | 45.0% | |
| GATTTCGGGACTATGGTCTA+TGG | + | Chr4:77130518-77130537 | MsG0480022825.01.T01:CDS | 45.0% | |
| ! | GTTGGTGGATGACCATAAAC+AGG | + | Chr4:77130540-77130559 | MsG0480022825.01.T01:CDS | 45.0% |
| AAACAGGAGTCGCCTTTAGG+TGG | + | Chr4:77130556-77130575 | MsG0480022825.01.T01:CDS | 50.0% | |
| GGACTATGGTCTATGGTTGG+TGG | + | Chr4:77130525-77130544 | MsG0480022825.01.T01:CDS | 50.0% | |
| TCGGGACTATGGTCTATGGT+TGG | + | Chr4:77130522-77130541 | MsG0480022825.01.T01:CDS | 50.0% | |
| CAGTCGGCATTCCCTACAGG+CGG | + | Chr4:77130397-77130416 | MsG0480022825.01.T01:CDS | 60.0% | |
| CCACAGTCGGCATTCCCTAC+AGG | + | Chr4:77130394-77130413 | MsG0480022825.01.T01:CDS | 60.0% | |
| ! | CCTGTAGGGAATGCCGACTG+TGG | - | Chr4:77130397-77130416 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 77130382 | 77130585 | 77130382 | ID=MsG0480022825.01;Name=MsG0480022825.01 |
| Chr4 | mRNA | 77130382 | 77130585 | 77130382 | ID=MsG0480022825.01.T01;Parent=MsG0480022825.01;Name=MsG0480022825.01.T01;_AED=0.44;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|67 |
| Chr4 | exon | 77130382 | 77130585 | 77130382 | ID=MsG0480022825.01.T01:exon:20026;Parent=MsG0480022825.01.T01 |
| Chr4 | CDS | 77130382 | 77130585 | 77130382 | ID=MsG0480022825.01.T01:cds;Parent=MsG0480022825.01.T01 |
| Chr4 | mRNA | 77130530 | 77130574 | 77130530 | ID=MsG0480022825.01.T02;Parent=MsG0480022825.01;Name=MsG0480022825.01.T02;_AED=0.49;_eAED=1.00;_QI=0|-1|0|1|-1|0|1|0|14 |
| Chr4 | exon | 77130530 | 77130574 | 77130530 | ID=MsG0480022825.01.T02:exon:20027;Parent=MsG0480022825.01.T02 |
| Chr4 | CDS | 77130530 | 77130574 | 77130530 | ID=MsG0480022825.01.T02:cds;Parent=MsG0480022825.01.T02 |
| Gene Sequence |
| Protein sequence |
