AlfalfaGEDB | MsG0480020784.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020784.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020784.01.T01	XP_024638377.1	98.103	949	18	0	1	949	2	950	0	1948

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0480020784.01	0.822541	2.241693e-53	1.881937e-50
MsG0080048036.01	MsG0480020784.01	0.856111	4.010678e-62	9.468965e-59
MsG0080048301.01	MsG0480020784.01	0.802100	6.584105e-49	3.197537e-46
MsG0080048347.01	MsG0480020784.01	0.813725	2.213265e-51	1.456667e-48
MsG0080048352.01	MsG0480020784.01	0.812054	5.141648e-51	3.235264e-48
MsG0080049066.01	MsG0480020784.01	-0.838674	2.498988e-57	3.371344e-54
MsG0080049133.01	MsG0480020784.01	-0.837538	4.900140e-57	6.384849e-54
MsG0180000234.01	MsG0480020784.01	0.823589	1.276594e-53	1.103920e-50
MsG0180000337.01	MsG0480020784.01	0.813006	3.183571e-51	2.054782e-48
MsG0180000467.01	MsG0480020784.01	-0.804536	2.061115e-49	1.065361e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020784.01.T01	MTR_4g058760	98.291	936	16	0	14	949	1	936	0.0	1922
MsG0480020784.01.T01	MTR_8g023050	27.795	331	189	10	605	901	52	366	1.59e-29	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020784.01.T01	AT5G60700	80.724	939	171	4	14	949	1	932	0.0	1576
MsG0480020784.01.T01	AT5G60700	86.527	668	90	0	282	949	1	668	0.0	1219
MsG0480020784.01.T01	AT5G12260	31.203	266	148	10	618	859	73	327	1.44e-27	119

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Find 162 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCTCCAATGTTTA+GGG	0.348787	4:-48253245	None:intergenic
AAAGAAAATGTTAGAGATTT+TGG	0.128444	4:+48250047	MsG0480020784.01.T01:CDS
AAAGAGAGAGCTTTATGAAG+AGG	0.472811	4:+48249648	MsG0480020784.01.T01:CDS
AAAGCATACATTGTTGTCCC+TGG	0.547242	4:+48251802	MsG0480020784.01.T01:CDS
AAAGCTGCTGGTGCTAAGTT+GGG	0.474235	4:+48253630	MsG0480020784.01.T01:CDS
AAAGTATAAGAATTCAGTTT+TGG	0.307108	4:+48250089	MsG0480020784.01.T01:CDS
AAATCCAAATGGGATTTGAA+AGG	0.575214	4:+48249730	MsG0480020784.01.T01:CDS
AAATTTAAGTCTAAAGAAGC+TGG	0.471279	4:+48250171	MsG0480020784.01.T01:CDS
AACAAGAGATGGAATTGTTG+TGG	0.564714	4:-48249563	None:intergenic
AACAATTCTTGGTGTGTATA+GGG	0.318766	4:-48253112	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCTCTCCAATGTTTA+GGG	-	Chr4:48253248-48253267	None:intergenic	30.0%
AAATCCAAATGGGATTTGAA+AGG	+	Chr4:48249730-48249749	MsG0480020784.01.T01:CDS	30.0%
AACTACAAGGTAATTGATGA+AGG	-	Chr4:48253209-48253228	None:intergenic	30.0%
AACTAGTAGGTTCATTTGAA+TGG	+	Chr4:48252875-48252894	MsG0480020784.01.T01:CDS	30.0%
AATTCCAATCACTTTCAACA+TGG	+	Chr4:48252825-48252844	MsG0480020784.01.T01:CDS	30.0%
AATTCTTGAGAAATCTGGTT+TGG	-	Chr4:48249440-48249459	None:intergenic	30.0%
AATTTCATCTCCTAGATAGT+AGG	-	Chr4:48252809-48252828	None:intergenic	30.0%
ATCCAAAAGACAAAGAAACA+TGG	+	Chr4:48251551-48251570	MsG0480020784.01.T01:CDS	30.0%
ATTGGTTATTGTTGTCTTCT+TGG	-	Chr4:48249537-48249556	None:intergenic	30.0%
CAACCATTTGTTCTTGATTT+AGG	-	Chr4:48253327-48253346	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	48249193	48253740	48249193	ID=MsG0480020784.01;Name=MsG0480020784.01
Chr4	mRNA	48249193	48253740	48249193	ID=MsG0480020784.01.T01;Parent=MsG0480020784.01;Name=MsG0480020784.01.T01;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|949
Chr4	exon	48249193	48250349	48249193	ID=MsG0480020784.01.T01:exon:8356;Parent=MsG0480020784.01.T01
Chr4	exon	48251501	48252171	48251501	ID=MsG0480020784.01.T01:exon:8357;Parent=MsG0480020784.01.T01
Chr4	exon	48252719	48253740	48252719	ID=MsG0480020784.01.T01:exon:8358;Parent=MsG0480020784.01.T01
Chr4	CDS	48249193	48250349	48249193	ID=MsG0480020784.01.T01:cds;Parent=MsG0480020784.01.T01
Chr4	CDS	48251501	48252171	48251501	ID=MsG0480020784.01.T01:cds;Parent=MsG0480020784.01.T01
Chr4	CDS	48252719	48253740	48252719	ID=MsG0480020784.01.T01:cds;Parent=MsG0480020784.01.T01

Gene Sequence

>MsG0480020784.01.T01

ATAAAGGACATTGAATCTATTAGTACTCCAATTTGTAACATGAGTTTTAGTCGAAATACGACGGCGAGAAGTGGAGATTCCTTGGATGGAATGTTGAATGACTATGTTGCTGGAAAGACCAAAACCAAGCCTCAAAAATCAGGCACAACAAAGTTTGTTGCAGCACTAACATGTCTTCAATTTTTCTTTGCAGTCTATGCAACATTTTTATTGTACTACATGGGTCCTTCAATTGATTTAAGAACCAAACCAGATTTCTCAAGAATTGCACAACAATGGAAAAGTCTCATGATCACACCACACATTGTAGGACATTATCAAGAAGCTGCATCTTCACTCATCCAAGAAGACAACAATAACCAATTTCAAGCCACAACAATTCCATCTCTTGTTTGTGAGAATGAAAAAATTGATTTCTTGCAAAAGAAGTCAAATGATGTTCAAATGATCAAGTTAAAGAGAGAGCTTTATGAAGAGGTTTTGAATTTCCAAAACAAAACCATTGGAAGTGAGACACTTCAAGAGCTAATGAACATGAAATCCAAATGGGATTTGAAAGGTCCAAATCCAAACAAACCGAAAATCAATGTTTTGTTGAACCATTTCAAGAGAAAAACACTTTGTGCTCAACTTGATTCCTTGCTTCAACAAACCCTACCTTTTCATCAAGTTTGGGTGCTTTCGTTCGGGAGTCCAAACGAGGCGTCCCTCAAGAGAATCGTGGAAAGCTATAACGATTCACGGATAAGTTTCATAAGCTCGGGTTACGATTTTAAGTACTATGGAAGGTTTCAAATGGCTTTGCAGACAGAAGCTGATTTGGTTTATATTGTTGATGATGATATGATACCTGGAAAGAAAATGTTAGAGATTTTGGCACATGTAGCTGGGACTGAAAAGTATAAGAATTCAGTTTTGGGAAGTATTGGGAGGATATTGCCATTTAGACAAAAGGATTTTACTTTTCCAAGTTATAGGAAATTTAAGTCTAAAGAAGCTGGATTATATTTACCTGATCCTGCCTATGATATCACTATTGATAAAATTGTGCAGGTTGATTTTCTTTCAAGTTCTTGGTTTTTATCTGCTGAGCTTGTCAAGACACTTTTCATTGAGACTCCTTTTACCTTCTCAACTGGTGAAGATTTGCACCTCAGCTATCAGCTTCAAAAGTATAGAAATGCAGGCTCATTTGTTCTACCAGTAGATCCAAAAGACAAAGAAACATGGGGTGATAGTGAACACAGACTAGCCTATGTATCAGAAACAACAGTAATTTTCAAAGACATAGTTCAAGTTCGCGATGATCAATGGTGGAAAGCACTTTCATCTGGCTACATAACACAATGGGCTGCAATGTACCCTCAAAAAATAGATGCGCTCTTCTATGCTCATTCAGTTGATGAAGTAAAAGCACTTTCACCACTTCTTGAAAAATTTAGATCAACAGTTGGCAAAAAAGCATACATTGTTGTCCCTGGTGGAAATTTCTGTCCTTGTGAACAAGCTGCAGCAGCTCTCAAATGGCCTCTTTTGGTTTGCAAAGAACGTCGGTTTAAGATCTTTGATTTAGGCGTTGGTTCAATTTCCGGGGTGTCGAACTCTGAGGCACCAGTTATACAAGCAGTGTATTCTAGTTTGAAGGGTTTGATTAAAATTCATAACCCAAGTGTTGTAATTACTGTGGATGATATTGATGTTAATGTGAGAAAGGCTTTGAAGATGGCTTCAGAAACTAATTCAAATGGGACTACATTGGTTCTTTTGCCTAGGGCTTCTGTGTCTAAAGTTCTTTGGATGGCTGATTTGAGATCAACAGCATTGCCTAATTGGAATAAAATGAGGCTATCTATCAACATCATAACCCAAAACAGGGTAAATTCACTAACAAGGCTTCTCAAATCACTCACCAATGCCTACTATCTAGGAGATGAAATTCCAATCACTTTCAACATGGATAGTAGAGTTGATGAAGCAACCATAAAACTAGTAGGTTCATTTGAATGGCCACATGGATCAAAAACACTAAGAAGAAGAATCATCCAAGGTGGACTCATAAGAGCAGTGAGTGAAAGTTGGTATCCATCTTCAGATGACAACTTTGGATTACTACTTGAAGATGACATTGAAGTCTCACCTTATTACTACCTATGGATCAAATATGCACTCATGAATTACCATTATGACCCTCAAGTCTCTCTCCCAGAACTCTCTTCCATCTCCCTATACACACCAAGAATTGTTGAAGTTGTCAAAGAAAGACCGAAATGGAATGCGACACAATTCTTCAAACAAATCCATCCAAACACACCTTACCTTCATCAATTACCTTGTAGTTGGGGAGCAGTGTTTTTCCCTAAACATTGGAGAGAGTTTTATGTTTACATGAACATGAGGTTCACTGAAGATGCTAAGAAAAACCCGGTTCAAATTCCTAAATCAAGAACAAATGGTTGGCAAGCTTCATGGAAAAAGTTTCTCATTGATATGATGTATTTAAGAGGGTATGTTAGTCTTTATCCAAATTTTCCAAACCAAGCAAGTTTTTCAACTAACCATATGGAACCAGGTGCACATATTAGTGCAAAAGATAATGTGGTTAAGCATAATAAAATGGATTTTGAGGTGCCATTGTTGAAGGATGATTTTAGGAATTTTTTGCCTGGAATGAAAATGCCTTCAGCTTCAAGATTACCATCTTTGAACCTTTTCAATCAGGCTGTTTCTCTTAAGGGACTTAAAGCTGCTGGTGCTAAGTTGGGACAGGATGTGCTTAGATGTAATAATGTTACTGAGATTGTTGCTGTTGATCATCATACTGGTCTACCTCATCACTGCTCAAGATTCTGA

Protein sequence

>MsG0480020784.01.T01

IKDIESISTPICNMSFSRNTTARSGDSLDGMLNDYVAGKTKTKPQKSGTTKFVAALTCLQFFFAVYATFLLYYMGPSIDLRTKPDFSRIAQQWKSLMITPHIVGHYQEAASSLIQEDNNNQFQATTIPSLVCENEKIDFLQKKSNDVQMIKLKRELYEEVLNFQNKTIGSETLQELMNMKSKWDLKGPNPNKPKINVLLNHFKRKTLCAQLDSLLQQTLPFHQVWVLSFGSPNEASLKRIVESYNDSRISFISSGYDFKYYGRFQMALQTEADLVYIVDDDMIPGKKMLEILAHVAGTEKYKNSVLGSIGRILPFRQKDFTFPSYRKFKSKEAGLYLPDPAYDITIDKIVQVDFLSSSWFLSAELVKTLFIETPFTFSTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSSGYITQWAAMYPQKIDALFYAHSVDEVKALSPLLEKFRSTVGKKAYIVVPGGNFCPCEQAAAALKWPLLVCKERRFKIFDLGVGSISGVSNSEAPVIQAVYSSLKGLIKIHNPSVVITVDDIDVNVRKALKMASETNSNGTTLVLLPRASVSKVLWMADLRSTALPNWNKMRLSINIITQNRVNSLTRLLKSLTNAYYLGDEIPITFNMDSRVDEATIKLVGSFEWPHGSKTLRRRIIQGGLIRAVSESWYPSSDDNFGLLLEDDIEVSPYYYLWIKYALMNYHYDPQVSLPELSSISLYTPRIVEVVKERPKWNATQFFKQIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKKNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNVVKHNKMDFEVPLLKDDFRNFLPGMKMPSASRLPSLNLFNQAVSLKGLKAAGAKLGQDVLRCNNVTEIVAVDHHTGLPHHCSRF*