AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015629.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015629.01.T01 MTR_3g073590 93.856 765 20 2 1 746 46 802 0.0 1450
MsG0380015629.01.T01 MTR_5g061340 58.967 736 234 8 15 745 302 974 0.0 849
MsG0380015629.01.T01 MTR_1g035690 41.139 474 271 6 277 745 129 599 1.68e-121 377
MsG0380015629.01.T01 MTR_8g033290 41.314 472 272 5 276 745 154 622 2.61e-119 372
MsG0380015629.01.T01 MTR_8g078760 30.734 218 140 3 537 746 404 618 1.14e-22 103
MsG0380015629.01.T01 MTR_5g018820 36.000 150 89 1 534 676 398 547 1.33e-20 97.1
MsG0380015629.01.T01 MTR_8g079840 34.682 173 101 5 537 703 379 545 4.46e-19 92.0
MsG0380015629.01.T01 MTR_3g101340 32.184 174 104 3 537 703 321 487 1.93e-18 89.7
MsG0380015629.01.T01 MTR_3g101340 32.184 174 104 3 537 703 347 513 2.13e-18 89.7
MsG0380015629.01.T01 MTR_5g066810 68.519 54 17 0 692 745 10 63 3.20e-18 79.7
MsG0380015629.01.T01 MTR_3g101340 30.220 182 105 3 537 703 346 520 3.47e-18 89.4
MsG0380015629.01.T01 MTR_4g068920 34.211 152 93 2 533 677 407 558 1.02e-17 87.8
MsG0380015629.01.T01 MTR_5g017790 34.118 170 100 5 540 703 331 494 3.15e-17 86.3
MsG0380015629.01.T01 MTR_5g017790 32.461 191 116 6 520 703 298 482 3.24e-17 85.9
MsG0380015629.01.T01 MTR_1g021040 31.548 168 106 3 540 703 333 495 4.98e-17 85.5
MsG0380015629.01.T01 MTR_8g078760 36.800 125 72 1 537 654 404 528 2.44e-16 83.2
MsG0380015629.01.T01 MTR_5g012790 31.765 170 101 3 524 680 345 512 1.25e-15 81.3
MsG0380015629.01.T01 MTR_5g079910 30.729 192 125 4 533 721 289 475 1.10e-13 74.7
MsG0380015629.01.T01 MTR_4g058015 27.706 231 145 7 533 746 462 687 4.30e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015629.01.T01 AT4G08550 62.413 572 193 4 176 745 139 690 0.0 720
MsG0380015629.01.T01 AT4G08550 55.594 572 178 6 176 745 139 636 0.0 608
MsG0380015629.01.T01 AT3G11920 39.413 477 280 5 276 745 155 629 2.47e-116 364
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 371 539 1.08e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 391 559 1.20e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 391 559 1.20e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 391 559 1.20e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 391 559 1.20e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 391 559 1.20e-23 106
MsG0380015629.01.T01 AT5G66600 33.721 172 105 2 537 702 337 505 1.24e-23 106
MsG0380015629.01.T01 AT1G16750 29.918 244 137 8 526 746 293 525 5.93e-23 103
MsG0380015629.01.T01 AT3G13000 31.280 211 124 7 526 724 343 544 7.75e-22 100
MsG0380015629.01.T01 AT3G13000 31.280 211 124 7 526 724 343 544 7.75e-22 100
MsG0380015629.01.T01 AT3G13000 31.280 211 124 7 526 724 314 515 8.43e-22 100
MsG0380015629.01.T01 AT2G23700 30.594 219 140 5 537 746 484 699 6.37e-20 95.1
MsG0380015629.01.T01 AT5G66600 38.710 124 70 1 537 654 391 514 1.88e-18 89.7
MsG0380015629.01.T01 AT5G66600 38.710 124 70 1 537 654 391 514 1.88e-18 89.7
MsG0380015629.01.T01 AT5G66600 38.710 124 70 1 537 654 391 514 1.88e-18 89.7
MsG0380015629.01.T01 AT5G66600 38.710 124 70 1 537 654 391 514 1.88e-18 89.7
MsG0380015629.01.T01 AT4G37080 32.948 173 104 5 537 703 392 558 3.57e-18 89.4
MsG0380015629.01.T01 AT4G37080 32.948 173 104 5 537 703 392 558 3.57e-18 89.4
MsG0380015629.01.T01 AT4G37080 32.948 173 104 5 537 703 379 545 4.45e-18 89.0
MsG0380015629.01.T01 AT5G42690 32.558 172 106 4 536 703 295 460 1.15e-17 87.4
MsG0380015629.01.T01 AT5G42690 32.558 172 106 4 536 703 321 486 1.24e-17 87.4
MsG0380015629.01.T01 AT5G42690 32.558 172 106 4 536 703 322 487 1.24e-17 87.4
MsG0380015629.01.T01 AT5G42690 32.558 172 106 4 536 703 322 487 1.24e-17 87.4
MsG0380015629.01.T01 AT5G42690 32.558 172 106 4 536 703 270 435 1.31e-17 87.0
MsG0380015629.01.T01 AT5G47380 33.898 177 100 4 534 698 359 530 3.21e-17 86.3
MsG0380015629.01.T01 AT5G47380 34.682 173 96 4 534 694 359 526 3.23e-17 86.3
MsG0380015629.01.T01 AT5G47380 34.682 173 96 4 534 694 303 470 3.52e-17 85.9
MsG0380015629.01.T01 AT3G18900 31.098 164 105 3 521 676 214 377 5.19e-16 81.6
MsG0380015629.01.T01 AT3G18900 31.098 164 105 3 521 676 214 377 5.19e-16 81.6
MsG0380015629.01.T01 AT3G18900 31.098 164 105 3 521 676 290 453 6.40e-16 82.0
MsG0380015629.01.T01 AT3G18900 31.098 164 105 3 521 676 295 458 6.56e-16 82.0
MsG0380015629.01.T01 AT1G21060 26.957 230 153 6 526 746 266 489 6.18e-14 75.5
MsG0380015629.01.T01 AT1G21060 26.957 230 153 6 526 746 278 501 7.43e-14 75.5
MsG0380015629.01.T01 AT1G76620 33.553 152 86 4 537 677 299 446 2.15e-13 73.9
MsG0380015629.01.T01 AT2G39690 30.952 168 110 3 537 702 307 470 6.26e-13 72.4
MsG0380015629.01.T01 AT2G39690 30.952 168 110 3 537 702 281 444 8.09e-13 72.0
MsG0380015629.01.T01 AT2G39690 30.952 168 110 3 537 702 200 363 9.24e-13 71.2
MsG0380015629.01.T01 AT2G39690 30.357 168 110 3 537 702 307 469 1.44e-12 71.2
MsG0380015629.01.T01 AT2G39690 30.357 168 110 3 537 702 281 443 1.88e-12 70.9
MsG0380015629.01.T01 AT1G43020 32.667 150 87 5 537 676 218 363 2.51e-12 70.1
MsG0380015629.01.T01 AT3G18900 30.986 142 90 3 521 654 295 436 2.83e-12 70.1
MsG0380015629.01.T01 AT5G47380 35.338 133 71 3 534 654 359 488 4.98e-12 69.7
MsG0380015629.01.T01 AT5G47380 35.878 131 69 3 534 652 359 486 5.88e-12 69.3
MsG0380015629.01.T01 AT1G16750 37.374 99 59 1 526 621 293 391 6.04e-12 68.9

Find 169 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCTTAATATAATTTA+AGG 0.073218 3:-72713095 None:intergenic
TGCATCAAGGCTGAGATTTC+TGG 0.101988 3:+72714461 MsG0380015629.01.T01:CDS
TGCGATAGGCTTTGGATTAA+TGG 0.164279 3:-72714433 None:intergenic
TTGGAAAGAAGGAAATTATT+TGG 0.198959 3:+72714831 MsG0380015629.01.T01:CDS
TTTAGGTATAGCATAGATTT+TGG 0.208784 3:+72715609 MsG0380015629.01.T01:intron
TCCAAGTGAGGACAACAATT+TGG 0.230260 3:+72712773 MsG0380015629.01.T01:CDS
TTCAATGTCACCGGAGATTC+TGG 0.234547 3:+72712537 MsG0380015629.01.T01:CDS
CATCCATGCAATCTTAATAT+TGG 0.235219 3:+72714791 MsG0380015629.01.T01:CDS
CTTATCAGAAGATCAATATT+TGG 0.236747 3:+72713639 MsG0380015629.01.T01:CDS
AATCCAATATTTCAACTCTT+TGG 0.237090 3:-72714716 None:intergenic
ACTATGCTGCGCCGCCTTTC+TGG 0.241084 3:+72712950 MsG0380015629.01.T01:CDS
TCCCTTTCAGCTATTCAAAA+TGG 0.243224 3:+72714888 MsG0380015629.01.T01:CDS
AACTGACTCAGCAATATTAT+TGG 0.243565 3:+72715680 MsG0380015629.01.T01:CDS
GGAGAGTTCAAATATGTTAT+AGG 0.244778 3:+72714852 MsG0380015629.01.T01:CDS
TTGGTATGTGGCACCCGATC+TGG 0.254719 3:+72715149 MsG0380015629.01.T01:CDS
AATGGCTTCTTAAGATTATA+TGG 0.265802 3:-72714936 None:intergenic
TGCAAAAGATAAACGCTTAA+AGG 0.270667 3:+72714962 MsG0380015629.01.T01:CDS
CTTCTTTCCAATGCTCCATC+TGG 0.285483 3:-72714819 None:intergenic
CAGTATAATCCTTCCTTTCA+TGG 0.286548 3:-72713188 None:intergenic
ATCCTTCCTTTCATGGCTAT+TGG 0.292169 3:-72713181 None:intergenic
AATTTGGACCCTGTATTTGA+TGG 0.308860 3:+72712789 MsG0380015629.01.T01:CDS
GCTCCAAAGAGTTGAAATAT+TGG 0.318765 3:+72714713 MsG0380015629.01.T01:CDS
ATATCATCCTCTCCAGAAAA+AGG 0.324034 3:-72713484 None:intergenic
GCAATTTCTGCGATAGGCTT+TGG 0.331252 3:-72714441 None:intergenic
TTCATCAACTGCCCCACTAA+TGG 0.342890 3:-72713509 None:intergenic
GCTTGCCTCTTCTGAATTGA+AGG 0.361482 3:+72715707 MsG0380015629.01.T01:CDS
ACGGAGTTGGAGAAGATATC+TGG 0.363743 3:+72713316 MsG0380015629.01.T01:CDS
CTAGATGAAATGCACAGATA+TGG 0.373544 3:+72712672 MsG0380015629.01.T01:CDS
ATCCATGCAATCTTAATATT+GGG 0.374358 3:+72714792 MsG0380015629.01.T01:CDS
GACTTCTTAATATAATTTAA+GGG 0.376502 3:-72713094 None:intergenic
TAACATTGTGACATCACAAT+TGG 0.376676 3:-72714387 None:intergenic
AGATTCTTGACACCCTAGTT+TGG 0.383221 3:-72713215 None:intergenic
TCCAAATTGTTGTCCTCACT+TGG 0.389670 3:-72712774 None:intergenic
TGCCATTCAGATTGAAGATC+AGG 0.390522 3:+72712383 MsG0380015629.01.T01:CDS
ATGTCAGTAAGATTCTTAAA+TGG 0.394125 3:+72715285 MsG0380015629.01.T01:CDS
TGGTATGTGGCACCCGATCT+GGG 0.395261 3:+72715150 MsG0380015629.01.T01:CDS
AGAAGTTAATGAAGCCAAAC+TGG 0.400357 3:+72713036 MsG0380015629.01.T01:CDS
AAGACGATAAATAGAAAGAT+AGG 0.402319 3:-72715942 None:intergenic
GAGGATGATATTTCCATTAG+TGG 0.406602 3:+72713496 MsG0380015629.01.T01:CDS
TTTGACCATTCTAAAGCTAA+AGG 0.406900 3:+72715858 MsG0380015629.01.T01:three_prime_UTR
CAGATATGGACTGGATGATT+TGG 0.409841 3:+72712686 MsG0380015629.01.T01:CDS
AGTGAAAATTTATTTGAAGA+TGG 0.410745 3:+72714333 MsG0380015629.01.T01:intron
CCCTAAGTTTGACAGTAAAC+TGG 0.417217 3:+72712443 MsG0380015629.01.T01:CDS
GTCAAGAATCTAGAATATTT+AGG 0.417224 3:+72713227 MsG0380015629.01.T01:CDS
TCCAACTCCGTCTTTCTACC+AGG 0.418763 3:-72713304 None:intergenic
TAGTGGGGCAGTTGATGAAT+TGG 0.419111 3:+72713513 MsG0380015629.01.T01:CDS
AGAGTATTCTGGTGGTGATA+AGG 0.425577 3:+72712605 MsG0380015629.01.T01:CDS
TAGCTTCTCAGAAACCAGTT+TGG 0.432311 3:-72713050 None:intergenic
TTCATGGCTATTGGTGATGA+TGG 0.432688 3:-72713172 None:intergenic
TCCAGTTTACTGTCAAACTT+AGG 0.433560 3:-72712444 None:intergenic
ACCTCGGTTCCATCAAATAC+AGG 0.434676 3:-72712798 None:intergenic
ACCAAAGCAAAATGAATCAT+AGG 0.439045 3:-72715131 None:intergenic
TCACGAGACCTCCACTTCTC+AGG 0.439974 3:-72715238 None:intergenic
ATTATACTGTACACCAAACT+AGG 0.448111 3:+72713202 MsG0380015629.01.T01:CDS
AATGTTGGTAAAGAGTATTC+TGG 0.448696 3:+72712594 MsG0380015629.01.T01:CDS
TTGACCATTCTAAAGCTAAA+GGG 0.450938 3:+72715859 MsG0380015629.01.T01:three_prime_UTR
GCCCTTCGATGCTATTCTCC+TGG 0.451401 3:+72715176 MsG0380015629.01.T01:CDS
GCAAAATGAATCATAGGCTC+GGG 0.452440 3:-72715125 None:intergenic
CAGATGGAGCATTGGAAAGA+AGG 0.457598 3:+72714820 MsG0380015629.01.T01:CDS
TCTACCCTTTAGCTTTAGAA+TGG 0.459486 3:-72715863 None:intergenic
TTAATGGTAATAATACCCTT+TGG 0.464994 3:-72714417 None:intergenic
TTCAATGAAATATGTATTGG+AGG 0.465319 3:+72713364 MsG0380015629.01.T01:CDS
TGATACATCGGACGTGATAA+CGG 0.466719 3:+72712467 MsG0380015629.01.T01:CDS
AGACATGGAATCCACAGATA+TGG 0.468766 3:+72712731 MsG0380015629.01.T01:CDS
TCGAAGGGCAGGCCCAGATC+GGG 0.471322 3:-72715162 None:intergenic
CAATATTAAGATTGCATGGA+TGG 0.471965 3:-72714790 None:intergenic
ATCGAAGGGCAGGCCCAGAT+CGG 0.479385 3:-72715163 None:intergenic
ATCCTGATCTTCAATCTGAA+TGG 0.479600 3:-72712385 None:intergenic
CTTGATGCAATTTCTGCGAT+AGG 0.479925 3:-72714447 None:intergenic
AGGTCTCGTGATTGATTTGA+CGG 0.480468 3:+72715250 MsG0380015629.01.T01:CDS
AGGATGATATTTCCATTAGT+GGG 0.486028 3:+72713497 MsG0380015629.01.T01:CDS
AGCAAAATGAATCATAGGCT+CGG 0.489457 3:-72715126 None:intergenic
TTTAGCCTCAAAATTTATGT+TGG 0.489491 3:-72712634 None:intergenic
TGAATCATAGGCTCGGGGTA+AGG 0.490288 3:-72715119 None:intergenic
TAGTTCAAACCCCAGTCATA+AGG 0.490858 3:-72715741 None:intergenic
TTGCAGCTTCTCAACCGCTT+GGG 0.498671 3:-72712349 None:intergenic
TTGCATGGAAGTGAGGAGTT+CGG 0.506332 3:+72714543 MsG0380015629.01.T01:CDS
GGTGATGGGGTTTCAAATAA+CGG 0.507052 3:-72713460 None:intergenic
CATGGAAGATCAGCATTTGT+TGG 0.507056 3:+72712308 None:intergenic
AATAATATTGCTGAGTCAGT+TGG 0.507212 3:-72715678 None:intergenic
GAAGCCTATGCTATTGAAGA+TGG 0.508503 3:+72714498 MsG0380015629.01.T01:CDS
CAGTCCAGGTGTGGTTGAGA+AGG 0.509358 3:+72712877 MsG0380015629.01.T01:CDS
GAATCATAGGCTCGGGGTAA+GGG 0.509661 3:-72715118 None:intergenic
CTTGCAGCTTCTCAACCGCT+TGG 0.510135 3:-72712350 None:intergenic
GGAGAATAGCATCGAAGGGC+AGG 0.510556 3:-72715173 None:intergenic
CAGAGGGATTCAGTAACAAA+TGG 0.513968 3:+72713148 MsG0380015629.01.T01:CDS
CGGAGCTAAACCAGAATCTC+CGG 0.514554 3:-72712547 None:intergenic
CAACAAATGCTGATCTTCCA+TGG 0.517186 3:-72712307 None:intergenic
AGCTAGTGGAGAAATCTGCT+TGG 0.519637 3:+72713068 MsG0380015629.01.T01:CDS
ACTGCCTTCTCAACCACACC+TGG 0.521661 3:-72712881 None:intergenic
TTACATATCAGCCTTATGAC+TGG 0.523585 3:+72715730 MsG0380015629.01.T01:CDS
CCAGTTTACTGTCAAACTTA+GGG 0.524030 3:-72712443 None:intergenic
TATAATCTTAAGAAGCCATT+CGG 0.524103 3:+72714939 MsG0380015629.01.T01:CDS
TATTCAAAATGGAATATTGA+GGG 0.525670 3:+72714899 MsG0380015629.01.T01:CDS
TATAGATCAAAATTAACATA+CGG 0.528367 3:-72715802 None:intergenic
TGGAAAACAAAACTGATCAG+AGG 0.529835 3:+72713131 MsG0380015629.01.T01:CDS
TCTCAGAATGTTGTTCATGA+TGG 0.530719 3:+72712420 MsG0380015629.01.T01:CDS
TACATATCAGCCTTATGACT+GGG 0.530867 3:+72715731 MsG0380015629.01.T01:CDS
CAGAAGATCAATATTTGGAA+AGG 0.531565 3:+72713644 MsG0380015629.01.T01:CDS
TCAGCATTTGTTGGAGACAA+AGG 0.531880 3:+72712317 MsG0380015629.01.T01:CDS
GACCCAATATTAAGATTGCA+TGG 0.533239 3:-72714794 None:intergenic
TCAATTCAGAAGAGGCAAGC+AGG 0.533585 3:-72715704 None:intergenic
AGAAAGGCGGCGCAGCATAG+TGG 0.536077 3:-72712948 None:intergenic
ATTTCAGTTTCAGAGTTGAT+CGG 0.542255 3:-72712567 None:intergenic
CACCAATAGCCATGAAAGGA+AGG 0.542926 3:+72713179 MsG0380015629.01.T01:CDS
CGCAATTTCCTGAGAAGTGG+AGG 0.544921 3:+72715230 MsG0380015629.01.T01:CDS
GATTGAAGATCAGGATAAAG+AGG 0.545716 3:+72712392 MsG0380015629.01.T01:CDS
TAAGATTATATGGAGGTCGT+TGG 0.546269 3:-72714926 None:intergenic
GAAACTGAAATTGATAATGT+TGG 0.549082 3:+72712579 MsG0380015629.01.T01:CDS
ATCCACAGATATGGATCAGA+AGG 0.552063 3:+72712740 MsG0380015629.01.T01:CDS
TTCCAGGAGAATAGCATCGA+AGG 0.554025 3:-72715178 None:intergenic
GTGATAACGGATGACAATGA+TGG 0.554075 3:+72712480 MsG0380015629.01.T01:CDS
CAATGTTACAATATTCCAAA+GGG 0.554541 3:+72714402 MsG0380015629.01.T01:CDS
GATGGAGATCAGGACAGTCC+AGG 0.555381 3:+72712863 MsG0380015629.01.T01:intron
GTATTCTGGTGGTGATAAGG+TGG 0.556223 3:+72712608 MsG0380015629.01.T01:CDS
CGACCACATAAATCATATGT+TGG 0.557270 3:+72715831 MsG0380015629.01.T01:three_prime_UTR
CAAGATTGCAAAGTAAAATG+AGG 0.558378 3:-72716010 None:intergenic
TTGAATAGCTGAAAGGGAGT+AGG 0.559780 3:-72714883 None:intergenic
GAAGTCATTTGATGTTGATG+TGG 0.561143 3:+72713111 MsG0380015629.01.T01:CDS
CCCTGGTAGAAAGACGGAGT+TGG 0.563695 3:+72713303 MsG0380015629.01.T01:CDS
TTAATATTGGGTCATCCAGA+TGG 0.565815 3:+72714804 MsG0380015629.01.T01:CDS
ACAGATTGTACAAAATGCGC+AGG 0.567629 3:+72713578 MsG0380015629.01.T01:CDS
CAGCCAACATATGATTTATG+TGG 0.567668 3:-72715834 None:intergenic
TGCCTTCTGATCCATATCTG+TGG 0.567944 3:-72712742 None:intergenic
TACAAGTTTGCATGGAAGTG+AGG 0.571856 3:+72714536 MsG0380015629.01.T01:CDS
AAAGAGAGATGTAAGACTTG+AGG 0.573081 3:+72715899 MsG0380015629.01.T01:three_prime_UTR
ATGGAAGTGAGGAGTTCGGC+AGG 0.573905 3:+72714547 MsG0380015629.01.T01:CDS
TGCAAAGTAAAATGAGGCGA+TGG 0.575128 3:-72716004 None:intergenic
AATAGCTGAAAGGGAGTAGG+TGG 0.575549 3:-72714880 None:intergenic
ACTCGCAATTTCCTGAGAAG+TGG 0.578546 3:+72715227 MsG0380015629.01.T01:CDS
TTCTGGTGGTGATAAGGTGG+AGG 0.580331 3:+72712611 MsG0380015629.01.T01:CDS
TCCAGGAGAATAGCATCGAA+GGG 0.585737 3:-72715177 None:intergenic
CTATTCAAAATGGAATATTG+AGG 0.586041 3:+72714898 MsG0380015629.01.T01:CDS
ACAATGTTACAATATTCCAA+AGG 0.587793 3:+72714401 MsG0380015629.01.T01:CDS
TGAAATGCACAGATATGGAC+TGG 0.589172 3:+72712677 MsG0380015629.01.T01:CDS
TGTAACCTTCAATTCAGAAG+AGG 0.594840 3:-72715712 None:intergenic
TCTAAAGCTAAAGGGTAGAG+TGG 0.600409 3:+72715867 MsG0380015629.01.T01:three_prime_UTR
GGAAAACAAAACTGATCAGA+GGG 0.600988 3:+72713132 MsG0380015629.01.T01:CDS
GTTGATTATACAAGTTTGCA+TGG 0.601412 3:+72714528 MsG0380015629.01.T01:CDS
TCAATATTTGGAAAGGCTAG+AGG 0.606043 3:+72713651 MsG0380015629.01.T01:CDS
ATAGATCAAAATTAACATAC+GGG 0.611388 3:-72715801 None:intergenic
ACTGGTTTCTGAGAAGCTAG+TGG 0.612901 3:+72713054 MsG0380015629.01.T01:CDS
TCATCACCAATAGCCATGAA+AGG 0.614646 3:+72713175 MsG0380015629.01.T01:CDS
CCAACTCCGTCTTTCTACCA+GGG 0.616219 3:-72713303 None:intergenic
ACATATCAGCCTTATGACTG+GGG 0.619604 3:+72715732 MsG0380015629.01.T01:CDS
GAGTTCAAATATGTTATAGG+TGG 0.620548 3:+72714855 MsG0380015629.01.T01:CDS
GGGTCATCCAGATGGAGCAT+TGG 0.621494 3:+72714812 MsG0380015629.01.T01:CDS
GGCAGATGAAATTCCAAGTG+AGG 0.627307 3:+72712761 MsG0380015629.01.T01:CDS
CCCTGTATTTGATGGAACCG+AGG 0.628835 3:+72712797 MsG0380015629.01.T01:CDS
TTATACTGTACACCAAACTA+GGG 0.629182 3:+72713203 MsG0380015629.01.T01:CDS
GCATCCATCTTCAATAGCAT+AGG 0.630339 3:-72714502 None:intergenic
CTATCGCAGAAATTGCATCA+AGG 0.631626 3:+72714448 MsG0380015629.01.T01:CDS
GGATGATATTTCCATTAGTG+GGG 0.635196 3:+72713498 MsG0380015629.01.T01:CDS
CAGTAAACTGGATGATACAT+CGG 0.636432 3:+72712455 MsG0380015629.01.T01:CDS
TGTATACCCTGGTAGAAAGA+CGG 0.637748 3:+72713297 MsG0380015629.01.T01:CDS
ATTCAAAATGGAATATTGAG+GGG 0.652429 3:+72714900 MsG0380015629.01.T01:CDS
CCTCGGTTCCATCAAATACA+GGG 0.653158 3:-72712797 None:intergenic
AGATCAGGACAGTCCAGGTG+TGG 0.655626 3:+72712868 MsG0380015629.01.T01:intron
AGAGAACAACAGTAGAGACA+TGG 0.666176 3:+72712716 MsG0380015629.01.T01:CDS
ATCAACATAGATGTATACCC+TGG 0.667136 3:+72713286 MsG0380015629.01.T01:CDS
TAACGGATGACAATGATGGA+AGG 0.676865 3:+72712484 MsG0380015629.01.T01:CDS
CAAAATGAATCATAGGCTCG+GGG 0.678249 3:-72715124 None:intergenic
GGCTTCTTAAGATTATATGG+AGG 0.684566 3:-72714933 None:intergenic
TGTAAAGGAGAAAAGTGCAG+TGG 0.690641 3:+72712919 MsG0380015629.01.T01:CDS
AAAAGTGATGAAGCTGCTGT+GGG 0.696516 3:+72712974 MsG0380015629.01.T01:CDS
ATAGGCTTCGAACATTGCAG+AGG 0.705917 3:-72714484 None:intergenic
AAAGGAAGCAAGTTCCCAAG+CGG 0.717434 3:+72712335 MsG0380015629.01.T01:CDS
GTTGGTAAAGAGTATTCTGG+TGG 0.735908 3:+72712597 MsG0380015629.01.T01:CDS
GCAAACTTGTATAATCAACG+CGG 0.798022 3:-72714524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAGTATAGAATTTTAAA+AGG - Chr3:72715385-72715404 None:intergenic 10.0%
!! AAATAGTGTATAAGATATTA+AGG - Chr3:72715339-72715358 None:intergenic 15.0%
!! ATAATGTATTACATAAAATG+AGG + Chr3:72713857-72713876 MsG0380015629.01.T01:intron 15.0%
!! GACTTCTTAATATAATTTAA+GGG - Chr3:72713097-72713116 None:intergenic 15.0%
!! TAAAAAAAGAAGAAAAACAA+TGG - Chr3:72714147-72714166 None:intergenic 15.0%
!! TATAGATCAAAATTAACATA+CGG - Chr3:72715805-72715824 None:intergenic 15.0%
!! TGACTTCTTAATATAATTTA+AGG - Chr3:72713098-72713117 None:intergenic 15.0%
!!! ATATGATCTTTTAAATCTAT+GGG - Chr3:72714001-72714020 None:intergenic 15.0%
!!! TATATGATCTTTTAAATCTA+TGG - Chr3:72714002-72714021 None:intergenic 15.0%
!!! TTTTTCAATGAAATATGTAT+TGG + Chr3:72713361-72713380 MsG0380015629.01.T01:CDS 15.0%
!! AAAAATTGACGAAGAATTAT+TGG + Chr3:72715199-72715218 MsG0380015629.01.T01:CDS 20.0%
!! AGTGAAAATTTATTTGAAGA+TGG + Chr3:72714333-72714352 MsG0380015629.01.T01:intron 20.0%
!! ATAGATCAAAATTAACATAC+GGG - Chr3:72715804-72715823 None:intergenic 20.0%
!! ATTTCATTGAAAAACAACTT+GGG - Chr3:72713355-72713374 None:intergenic 20.0%
!! TATTCAAAATGGAATATTGA+GGG + Chr3:72714899-72714918 MsG0380015629.01.T01:CDS 20.0%
!! TATTTCATTGAAAAACAACT+TGG - Chr3:72713356-72713375 None:intergenic 20.0%
!! TTAAATCTATGGGATATTTA+GGG - Chr3:72713991-72714010 None:intergenic 20.0%
!! TTCTTTCAAATACAATTTGT+AGG + Chr3:72713937-72713956 MsG0380015629.01.T01:intron 20.0%
!! TTTAAATCTATGGGATATTT+AGG - Chr3:72713992-72714011 None:intergenic 20.0%
!!! CTTCTTTTTTTAATTTTGTC+TGG + Chr3:72714155-72714174 MsG0380015629.01.T01:intron 20.0%
! AAGACGATAAATAGAAAGAT+AGG - Chr3:72715945-72715964 None:intergenic 25.0%
! AATCCAATATTTCAACTCTT+TGG - Chr3:72714719-72714738 None:intergenic 25.0%
! AATGGCTTCTTAAGATTATA+TGG - Chr3:72714939-72714958 None:intergenic 25.0%
! ACAATGTTACAATATTCCAA+AGG + Chr3:72714401-72714420 MsG0380015629.01.T01:CDS 25.0%
! ATACCTAAATATGAACAATG+AGG - Chr3:72715598-72715617 None:intergenic 25.0%
! ATCCATGCAATCTTAATATT+GGG + Chr3:72714792-72714811 MsG0380015629.01.T01:CDS 25.0%
! ATGTCAGTAAGATTCTTAAA+TGG + Chr3:72715285-72715304 MsG0380015629.01.T01:CDS 25.0%
! ATTCAAAATGGAATATTGAG+GGG + Chr3:72714900-72714919 MsG0380015629.01.T01:CDS 25.0%
! ATTCCTCATTGTTCATATTT+AGG + Chr3:72715592-72715611 MsG0380015629.01.T01:intron 25.0%
! CAATGTTACAATATTCCAAA+GGG + Chr3:72714402-72714421 MsG0380015629.01.T01:CDS 25.0%
! CTATTCAAAATGGAATATTG+AGG + Chr3:72714898-72714917 MsG0380015629.01.T01:CDS 25.0%
! CTTATCAGAAGATCAATATT+TGG + Chr3:72713639-72713658 MsG0380015629.01.T01:CDS 25.0%
! GAAAAAAAATTCAATGTCAC+CGG + Chr3:72712528-72712547 MsG0380015629.01.T01:CDS 25.0%
! GTTAGAAATTGTGTTTACTT+TGG + Chr3:72715546-72715565 MsG0380015629.01.T01:intron 25.0%
! TATAATCTTAAGAAGCCATT+CGG + Chr3:72714939-72714958 MsG0380015629.01.T01:CDS 25.0%
! TTAATGGTAATAATACCCTT+TGG - Chr3:72714420-72714439 None:intergenic 25.0%
! TTCAATGAAATATGTATTGG+AGG + Chr3:72713364-72713383 MsG0380015629.01.T01:CDS 25.0%
! TTGGAAAGAAGGAAATTATT+TGG + Chr3:72714831-72714850 MsG0380015629.01.T01:CDS 25.0%
! TTTAGCCTCAAAATTTATGT+TGG - Chr3:72712637-72712656 None:intergenic 25.0%
! TTTGATTACGTATGAATTTG+TGG - Chr3:72713739-72713758 None:intergenic 25.0%
!! GTCAAGAATCTAGAATATTT+AGG + Chr3:72713227-72713246 MsG0380015629.01.T01:CDS 25.0%
!! TTTAGGTATAGCATAGATTT+TGG + Chr3:72715609-72715628 MsG0380015629.01.T01:intron 25.0%
!! TTTTACGTACAAAAAGACTT+AGG + Chr3:72713254-72713273 MsG0380015629.01.T01:CDS 25.0%
!!! CGTTGATTCATTTATTTGAT+AGG + Chr3:72715088-72715107 MsG0380015629.01.T01:intron 25.0%
!!! CTTTTTTTAATTTTGTCTGG+TGG + Chr3:72714158-72714177 MsG0380015629.01.T01:intron 25.0%
!!! GAAACTGAAATTGATAATGT+TGG + Chr3:72712579-72712598 MsG0380015629.01.T01:CDS 25.0%
!!! TTTCGAGCACAATTTATTTT+TGG + Chr3:72714111-72714130 MsG0380015629.01.T01:intron 25.0%
AATAATATTGCTGAGTCAGT+TGG - Chr3:72715681-72715700 None:intergenic 30.0%
ACCAAAGCAAAATGAATCAT+AGG - Chr3:72715134-72715153 None:intergenic 30.0%
AGGATGATATTTCCATTAGT+GGG + Chr3:72713497-72713516 MsG0380015629.01.T01:CDS 30.0%
ATTATACTGTACACCAAACT+AGG + Chr3:72713202-72713221 MsG0380015629.01.T01:CDS 30.0%
CAAGATTGCAAAGTAAAATG+AGG - Chr3:72716013-72716032 None:intergenic 30.0%
CAATATTAAGATTGCATGGA+TGG - Chr3:72714793-72714812 None:intergenic 30.0%
CAGAAGATCAATATTTGGAA+AGG + Chr3:72713644-72713663 MsG0380015629.01.T01:CDS 30.0%
CATCCATGCAATCTTAATAT+TGG + Chr3:72714791-72714810 MsG0380015629.01.T01:CDS 30.0%
CGCTCTTAAAAATCTTGTAA+AGG + Chr3:72712904-72712923 MsG0380015629.01.T01:CDS 30.0%
CTTAAAAACTTGGATGAATC+TGG + Chr3:72713397-72713416 MsG0380015629.01.T01:CDS 30.0%
GAACTTACAAAATGACTGAA+TGG - Chr3:72714648-72714667 None:intergenic 30.0%
GAGTTCAAATATGTTATAGG+TGG + Chr3:72714855-72714874 MsG0380015629.01.T01:CDS 30.0%
GGAGAGTTCAAATATGTTAT+AGG + Chr3:72714852-72714871 MsG0380015629.01.T01:CDS 30.0%
GTTGATTATACAAGTTTGCA+TGG + Chr3:72714528-72714547 MsG0380015629.01.T01:CDS 30.0%
TAACATTGTGACATCACAAT+TGG - Chr3:72714390-72714409 None:intergenic 30.0%
TACAAAAAGACTTAGGTTTG+TGG + Chr3:72713261-72713280 MsG0380015629.01.T01:CDS 30.0%
TGCAAAAGATAAACGCTTAA+AGG + Chr3:72714962-72714981 MsG0380015629.01.T01:CDS 30.0%
TTATACTGTACACCAAACTA+GGG + Chr3:72713203-72713222 MsG0380015629.01.T01:CDS 30.0%
TTGTCTAATTGTCTTAGCTT+TGG + Chr3:72713679-72713698 MsG0380015629.01.T01:intron 30.0%
! AACTGACTCAGCAATATTAT+TGG + Chr3:72715680-72715699 MsG0380015629.01.T01:CDS 30.0%
! AATTCTTCGTCAATTTTTCC+AGG - Chr3:72715197-72715216 None:intergenic 30.0%
! ATGCTATTTGTTGACATTGT+AGG + Chr3:72714670-72714689 MsG0380015629.01.T01:intron 30.0%
! ATTCATTTTGCTTTGGTATG+TGG + Chr3:72715137-72715156 MsG0380015629.01.T01:CDS 30.0%
! ATTTCAGTTTCAGAGTTGAT+CGG - Chr3:72712570-72712589 None:intergenic 30.0%
! TCCATTTTGAATAGCTGAAA+GGG - Chr3:72714892-72714911 None:intergenic 30.0%
! TGTCTAATTGTCTTAGCTTT+GGG + Chr3:72713680-72713699 MsG0380015629.01.T01:intron 30.0%
! TTCCATTTTGAATAGCTGAA+AGG - Chr3:72714893-72714912 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+TGG + Chr3:72714995-72715014 MsG0380015629.01.T01:intron 30.0%
!! AATGTTGGTAAAGAGTATTC+TGG + Chr3:72712594-72712613 MsG0380015629.01.T01:CDS 30.0%
!! TCAGAGTTCTAAACTTCTAA+CGG - Chr3:72714602-72714621 None:intergenic 30.0%
!! TTGACCATTCTAAAGCTAAA+GGG + Chr3:72715859-72715878 MsG0380015629.01.T01:three_prime_UTR 30.0%
!! TTTGACCATTCTAAAGCTAA+AGG + Chr3:72715858-72715877 MsG0380015629.01.T01:three_prime_UTR 30.0%
!!! AGGTTTACCAACTGTTTTTT+GGG + Chr3:72713598-72713617 MsG0380015629.01.T01:CDS 30.0%
AAAGAGAGATGTAAGACTTG+AGG + Chr3:72715899-72715918 MsG0380015629.01.T01:three_prime_UTR 35.0%
AATTTGGACCCTGTATTTGA+TGG + Chr3:72712789-72712808 MsG0380015629.01.T01:CDS 35.0%
AATTTGTGGAATCACTTGTG+TGG - Chr3:72713725-72713744 None:intergenic 35.0%
AGAAGTTAATGAAGCCAAAC+TGG + Chr3:72713036-72713055 MsG0380015629.01.T01:CDS 35.0%
AGCAAAATGAATCATAGGCT+CGG - Chr3:72715129-72715148 None:intergenic 35.0%
ATATCATCCTCTCCAGAAAA+AGG - Chr3:72713487-72713506 None:intergenic 35.0%
ATCAACATAGATGTATACCC+TGG + Chr3:72713286-72713305 MsG0380015629.01.T01:CDS 35.0%
ATCCTGATCTTCAATCTGAA+TGG - Chr3:72712388-72712407 None:intergenic 35.0%
ATTGTGCTCGAAAGAATCTA+TGG - Chr3:72714104-72714123 None:intergenic 35.0%
CAGCCAACATATGATTTATG+TGG - Chr3:72715837-72715856 None:intergenic 35.0%
CAGTAAACTGGATGATACAT+CGG + Chr3:72712455-72712474 MsG0380015629.01.T01:CDS 35.0%
CAGTATAATCCTTCCTTTCA+TGG - Chr3:72713191-72713210 None:intergenic 35.0%
CCAGTTTACTGTCAAACTTA+GGG - Chr3:72712446-72712465 None:intergenic 35.0%
CGACCACATAAATCATATGT+TGG + Chr3:72715831-72715850 MsG0380015629.01.T01:three_prime_UTR 35.0%
CTAGATGAAATGCACAGATA+TGG + Chr3:72712672-72712691 MsG0380015629.01.T01:CDS 35.0%
CTTGAGTGAGCTTAAAAACT+TGG + Chr3:72713387-72713406 MsG0380015629.01.T01:CDS 35.0%
CTTGAGTGAGTCTATATACT+TGG + Chr3:72714237-72714256 MsG0380015629.01.T01:intron 35.0%
GAAGTCATTTGATGTTGATG+TGG + Chr3:72713111-72713130 MsG0380015629.01.T01:CDS 35.0%
GACCCAATATTAAGATTGCA+TGG - Chr3:72714797-72714816 None:intergenic 35.0%
GAGGATGATATTTCCATTAG+TGG + Chr3:72713496-72713515 MsG0380015629.01.T01:CDS 35.0%
GATTGAAGATCAGGATAAAG+AGG + Chr3:72712392-72712411 MsG0380015629.01.T01:CDS 35.0%
GCAAACTTGTATAATCAACG+CGG - Chr3:72714527-72714546 None:intergenic 35.0%
GCTCCAAAGAGTTGAAATAT+TGG + Chr3:72714713-72714732 MsG0380015629.01.T01:CDS 35.0%
GGAAAACAAAACTGATCAGA+GGG + Chr3:72713132-72713151 MsG0380015629.01.T01:CDS 35.0%
GGATGATATTTCCATTAGTG+GGG + Chr3:72713498-72713517 MsG0380015629.01.T01:CDS 35.0%
GGCTTCTTAAGATTATATGG+AGG - Chr3:72714936-72714955 None:intergenic 35.0%
TAAGATTATATGGAGGTCGT+TGG - Chr3:72714929-72714948 None:intergenic 35.0%
TCAATATTTGGAAAGGCTAG+AGG + Chr3:72713651-72713670 MsG0380015629.01.T01:CDS 35.0%
TCCAGTTTACTGTCAAACTT+AGG - Chr3:72712447-72712466 None:intergenic 35.0%
TCCCTTTCAGCTATTCAAAA+TGG + Chr3:72714888-72714907 MsG0380015629.01.T01:CDS 35.0%
TCTCAGAATGTTGTTCATGA+TGG + Chr3:72712420-72712439 MsG0380015629.01.T01:CDS 35.0%
TGGAAAACAAAACTGATCAG+AGG + Chr3:72713131-72713150 MsG0380015629.01.T01:CDS 35.0%
TGTAACCTTCAATTCAGAAG+AGG - Chr3:72715715-72715734 None:intergenic 35.0%
TTAATATTGGGTCATCCAGA+TGG + Chr3:72714804-72714823 MsG0380015629.01.T01:CDS 35.0%
TTGTGCTCGAAAGAATCTAT+GGG - Chr3:72714103-72714122 None:intergenic 35.0%
! GCCTATGATTCATTTTGCTT+TGG + Chr3:72715130-72715149 MsG0380015629.01.T01:CDS 35.0%
! TACATATCAGCCTTATGACT+GGG + Chr3:72715731-72715750 MsG0380015629.01.T01:CDS 35.0%
! TTAATTTTGTCTGGTGGTAC+AGG + Chr3:72714164-72714183 MsG0380015629.01.T01:intron 35.0%
! TTACATATCAGCCTTATGAC+TGG + Chr3:72715730-72715749 MsG0380015629.01.T01:CDS 35.0%
!! CAATCATGTGTATCGCTTTT+TGG + Chr3:72714356-72714375 MsG0380015629.01.T01:CDS 35.0%
!! TCTACCCTTTAGCTTTAGAA+TGG - Chr3:72715866-72715885 None:intergenic 35.0%
!!! CAGGTTTACCAACTGTTTTT+TGG + Chr3:72713597-72713616 MsG0380015629.01.T01:CDS 35.0%
!!! CTTCATCACTTTTTCCAGAA+AGG - Chr3:72712967-72712986 None:intergenic 35.0%
AAAAAGTGATGAAGCTGCTG+TGG + Chr3:72712973-72712992 MsG0380015629.01.T01:CDS 40.0%
AAAAGTGATGAAGCTGCTGT+GGG + Chr3:72712974-72712993 MsG0380015629.01.T01:CDS 40.0%
AACGTGAGCATCAAAACTGA+TGG - Chr3:72715072-72715091 None:intergenic 40.0%
ACAGATTGTACAAAATGCGC+AGG + Chr3:72713578-72713597 MsG0380015629.01.T01:CDS 40.0%
ACATCTACCCGTAAATTGGA+TGG + Chr3:72712845-72712864 MsG0380015629.01.T01:intron 40.0%
AGACATGGAATCCACAGATA+TGG + Chr3:72712731-72712750 MsG0380015629.01.T01:CDS 40.0%
AGAGAACAACAGTAGAGACA+TGG + Chr3:72712716-72712735 MsG0380015629.01.T01:CDS 40.0%
AGATTCTTGACACCCTAGTT+TGG - Chr3:72713218-72713237 None:intergenic 40.0%
ATCCACAGATATGGATCAGA+AGG + Chr3:72712740-72712759 MsG0380015629.01.T01:CDS 40.0%
ATCCTTCCTTTCATGGCTAT+TGG - Chr3:72713184-72713203 None:intergenic 40.0%
CAAAATGAATCATAGGCTCG+GGG - Chr3:72715127-72715146 None:intergenic 40.0%
CAGAGGGATTCAGTAACAAA+TGG + Chr3:72713148-72713167 MsG0380015629.01.T01:CDS 40.0%
CCCTAAGTTTGACAGTAAAC+TGG + Chr3:72712443-72712462 MsG0380015629.01.T01:CDS 40.0%
CCTGATCTCCATCCAATTTA+CGG - Chr3:72712856-72712875 None:intergenic 40.0%
CTATCGCAGAAATTGCATCA+AGG + Chr3:72714448-72714467 MsG0380015629.01.T01:CDS 40.0%
CTGATCTCCATCCAATTTAC+GGG - Chr3:72712855-72712874 None:intergenic 40.0%
CTTGATGCAATTTCTGCGAT+AGG - Chr3:72714450-72714469 None:intergenic 40.0%
GAAGCCTATGCTATTGAAGA+TGG + Chr3:72714498-72714517 MsG0380015629.01.T01:CDS 40.0%
GCAAAATGAATCATAGGCTC+GGG - Chr3:72715128-72715147 None:intergenic 40.0%
GCATCCATCTTCAATAGCAT+AGG - Chr3:72714505-72714524 None:intergenic 40.0%
TACAAGTTTGCATGGAAGTG+AGG + Chr3:72714536-72714555 MsG0380015629.01.T01:CDS 40.0%
TAGCTTCTCAGAAACCAGTT+TGG - Chr3:72713053-72713072 None:intergenic 40.0%
TAGTTCAAACCCCAGTCATA+AGG - Chr3:72715744-72715763 None:intergenic 40.0%
TCATCACCAATAGCCATGAA+AGG + Chr3:72713175-72713194 MsG0380015629.01.T01:CDS 40.0%
TCCAAATTGTTGTCCTCACT+TGG - Chr3:72712777-72712796 None:intergenic 40.0%
TCCAAGTGAGGACAACAATT+TGG + Chr3:72712773-72712792 MsG0380015629.01.T01:CDS 40.0%
TGAAATGCACAGATATGGAC+TGG + Chr3:72712677-72712696 MsG0380015629.01.T01:CDS 40.0%
TGATACATCGGACGTGATAA+CGG + Chr3:72712467-72712486 MsG0380015629.01.T01:CDS 40.0%
TGCAAAGTAAAATGAGGCGA+TGG - Chr3:72716007-72716026 None:intergenic 40.0%
TGCCATTCAGATTGAAGATC+AGG + Chr3:72712383-72712402 MsG0380015629.01.T01:CDS 40.0%
TGTATACCCTGGTAGAAAGA+CGG + Chr3:72713297-72713316 MsG0380015629.01.T01:CDS 40.0%
TTGAATAGCTGAAAGGGAGT+AGG - Chr3:72714886-72714905 None:intergenic 40.0%
! ACATATCAGCCTTATGACTG+GGG + Chr3:72715732-72715751 MsG0380015629.01.T01:CDS 40.0%
! AGAGTATTCTGGTGGTGATA+AGG + Chr3:72712605-72712624 MsG0380015629.01.T01:CDS 40.0%
! CGTTTATCTTTTGCACCGAA+TGG - Chr3:72714957-72714976 None:intergenic 40.0%
! GGAGGCCAACATAAATTTTG+AGG + Chr3:72712629-72712648 MsG0380015629.01.T01:CDS 40.0%
! TAACGGATGACAATGATGGA+AGG + Chr3:72712484-72712503 MsG0380015629.01.T01:CDS 40.0%
! TCAGCATTTGTTGGAGACAA+AGG + Chr3:72712317-72712336 MsG0380015629.01.T01:CDS 40.0%
! TCTAAAGCTAAAGGGTAGAG+TGG + Chr3:72715867-72715886 MsG0380015629.01.T01:three_prime_UTR 40.0%
! TGTAAAGGAGAAAAGTGCAG+TGG + Chr3:72712919-72712938 MsG0380015629.01.T01:CDS 40.0%
!! AGGTCTCGTGATTGATTTGA+CGG + Chr3:72715250-72715269 MsG0380015629.01.T01:CDS 40.0%
!! CAGATATGGACTGGATGATT+TGG + Chr3:72712686-72712705 MsG0380015629.01.T01:CDS 40.0%
!! GGTGATGGGGTTTCAAATAA+CGG - Chr3:72713463-72713482 None:intergenic 40.0%
!! GTGATAACGGATGACAATGA+TGG + Chr3:72712480-72712499 MsG0380015629.01.T01:CDS 40.0%
!! GTTGGTAAAGAGTATTCTGG+TGG + Chr3:72712597-72712616 MsG0380015629.01.T01:CDS 40.0%
!! TGCGATAGGCTTTGGATTAA+TGG - Chr3:72714436-72714455 None:intergenic 40.0%
!! TTCATGGCTATTGGTGATGA+TGG - Chr3:72713175-72713194 None:intergenic 40.0%
!!! CATCACTTTTTCCAGAAAGG+CGG - Chr3:72712964-72712983 None:intergenic 40.0%
!!! GTGGGTGATTTTGATGATGA+AGG + Chr3:72712992-72713011 MsG0380015629.01.T01:CDS 40.0%
AAAGGAAGCAAGTTCCCAAG+CGG + Chr3:72712335-72712354 MsG0380015629.01.T01:CDS 45.0%
AATAGCTGAAAGGGAGTAGG+TGG - Chr3:72714883-72714902 None:intergenic 45.0%
ACCTCGGTTCCATCAAATAC+AGG - Chr3:72712801-72712820 None:intergenic 45.0%
ACGGAGTTGGAGAAGATATC+TGG + Chr3:72713316-72713335 MsG0380015629.01.T01:CDS 45.0%
ACTCGCAATTTCCTGAGAAG+TGG + Chr3:72715227-72715246 MsG0380015629.01.T01:CDS 45.0%
AGCTAGTGGAGAAATCTGCT+TGG + Chr3:72713068-72713087 MsG0380015629.01.T01:CDS 45.0%
AGGTTGCTTACTCGTTGTGT+CGG - Chr3:72715365-72715384 None:intergenic 45.0%
ATAGGCTTCGAACATTGCAG+AGG - Chr3:72714487-72714506 None:intergenic 45.0%
ATTTACGGGTAGATGTGCTC+CGG - Chr3:72712841-72712860 None:intergenic 45.0%
ATTTGATGGAACCGAGGTTC+CGG + Chr3:72712803-72712822 MsG0380015629.01.T01:intron 45.0%
CACCAATAGCCATGAAAGGA+AGG + Chr3:72713179-72713198 MsG0380015629.01.T01:CDS 45.0%
CCGTAAATTGGATGGAGATC+AGG + Chr3:72712853-72712872 MsG0380015629.01.T01:intron 45.0%
CCTCGGTTCCATCAAATACA+GGG - Chr3:72712800-72712819 None:intergenic 45.0%
CTTCTTTCCAATGCTCCATC+TGG - Chr3:72714822-72714841 None:intergenic 45.0%
GAGCACATCTACCCGTAAAT+TGG + Chr3:72712841-72712860 MsG0380015629.01.T01:intron 45.0%
GCAATTTCTGCGATAGGCTT+TGG - Chr3:72714444-72714463 None:intergenic 45.0%
GCTTGCCTCTTCTGAATTGA+AGG + Chr3:72715707-72715726 MsG0380015629.01.T01:CDS 45.0%
GGCAGATGAAATTCCAAGTG+AGG + Chr3:72712761-72712780 MsG0380015629.01.T01:CDS 45.0%
GTCTGAGCCCAAAAAACAGT+TGG - Chr3:72713608-72713627 None:intergenic 45.0%
TCAATTCAGAAGAGGCAAGC+AGG - Chr3:72715707-72715726 None:intergenic 45.0%
TCATCCTCTCCAGAAAAAGG+CGG - Chr3:72713484-72713503 None:intergenic 45.0%
TGCATCAAGGCTGAGATTTC+TGG + Chr3:72714461-72714480 MsG0380015629.01.T01:CDS 45.0%
TGCCTTCTGATCCATATCTG+TGG - Chr3:72712745-72712764 None:intergenic 45.0%
TTCAATGTCACCGGAGATTC+TGG + Chr3:72712537-72712556 MsG0380015629.01.T01:CDS 45.0%
TTCATCAACTGCCCCACTAA+TGG - Chr3:72713512-72713531 None:intergenic 45.0%
TTGCATGGAAGTGAGGAGTT+CGG + Chr3:72714543-72714562 MsG0380015629.01.T01:CDS 45.0%
! ACTGGTTTCTGAGAAGCTAG+TGG + Chr3:72713054-72713073 MsG0380015629.01.T01:CDS 45.0%
! GTATTCTGGTGGTGATAAGG+TGG + Chr3:72712608-72712627 MsG0380015629.01.T01:CDS 45.0%
! TCCAGGAGAATAGCATCGAA+GGG - Chr3:72715180-72715199 None:intergenic 45.0%
! TTCCAGGAGAATAGCATCGA+AGG - Chr3:72715181-72715200 None:intergenic 45.0%
! TTTTGGCAAAAGCGAGCTTG+AGG + Chr3:72715626-72715645 MsG0380015629.01.T01:CDS 45.0%
!! CAGATGGAGCATTGGAAAGA+AGG + Chr3:72714820-72714839 MsG0380015629.01.T01:CDS 45.0%
!! TAGTGGGGCAGTTGATGAAT+TGG + Chr3:72713513-72713532 MsG0380015629.01.T01:CDS 45.0%
CCAACTCCGTCTTTCTACCA+GGG - Chr3:72713306-72713325 None:intergenic 50.0%
CCCTGTATTTGATGGAACCG+AGG + Chr3:72712797-72712816 MsG0380015629.01.T01:CDS 50.0%
CGCAATTTCCTGAGAAGTGG+AGG + Chr3:72715230-72715249 MsG0380015629.01.T01:CDS 50.0%
CGGAGCTAAACCAGAATCTC+CGG - Chr3:72712550-72712569 None:intergenic 50.0%
CTCCAGAAAAAGGCGGTGAT+GGG - Chr3:72713477-72713496 None:intergenic 50.0%
GAATCATAGGCTCGGGGTAA+GGG - Chr3:72715121-72715140 None:intergenic 50.0%
GTTCCGGGATGGAAGTTAAC+CGG + Chr3:72712819-72712838 MsG0380015629.01.T01:intron 50.0%
TAACTTCCATCCCGGAACCT+CGG - Chr3:72712817-72712836 None:intergenic 50.0%
TCCAACTCCGTCTTTCTACC+AGG - Chr3:72713307-72713326 None:intergenic 50.0%
TCCAGAAAAAGGCGGTGATG+GGG - Chr3:72713476-72713495 None:intergenic 50.0%
TCTCCAGAAAAAGGCGGTGA+TGG - Chr3:72713478-72713497 None:intergenic 50.0%
TGAATCATAGGCTCGGGGTA+AGG - Chr3:72715122-72715141 None:intergenic 50.0%
TTGCAGCTTCTCAACCGCTT+GGG - Chr3:72712352-72712371 None:intergenic 50.0%
TTTGATGGAACCGAGGTTCC+GGG + Chr3:72712804-72712823 MsG0380015629.01.T01:intron 50.0%
! TTCTGGTGGTGATAAGGTGG+AGG + Chr3:72712611-72712630 MsG0380015629.01.T01:CDS 50.0%
!! ATCACCGCCTTTTTCTGGAG+AGG + Chr3:72713477-72713496 MsG0380015629.01.T01:CDS 50.0%
ACTGCCTTCTCAACCACACC+TGG - Chr3:72712884-72712903 None:intergenic 55.0%
AGATCAGGACAGTCCAGGTG+TGG + Chr3:72712868-72712887 MsG0380015629.01.T01:intron 55.0%
ATGGAAGTGAGGAGTTCGGC+AGG + Chr3:72714547-72714566 MsG0380015629.01.T01:CDS 55.0%
CAGTCCAGGTGTGGTTGAGA+AGG + Chr3:72712877-72712896 MsG0380015629.01.T01:CDS 55.0%
CCCTGGTAGAAAGACGGAGT+TGG + Chr3:72713303-72713322 MsG0380015629.01.T01:CDS 55.0%
CTTGCAGCTTCTCAACCGCT+TGG - Chr3:72712353-72712372 None:intergenic 55.0%
GATGGAGATCAGGACAGTCC+AGG + Chr3:72712863-72712882 MsG0380015629.01.T01:intron 55.0%
GCCCTTCGATGCTATTCTCC+TGG + Chr3:72715176-72715195 MsG0380015629.01.T01:CDS 55.0%
GCTCCGGTTAACTTCCATCC+CGG - Chr3:72712825-72712844 None:intergenic 55.0%
GGGTCATCCAGATGGAGCAT+TGG + Chr3:72714812-72714831 MsG0380015629.01.T01:CDS 55.0%
TCACGAGACCTCCACTTCTC+AGG - Chr3:72715241-72715260 None:intergenic 55.0%
TGGTATGTGGCACCCGATCT+GGG + Chr3:72715150-72715169 MsG0380015629.01.T01:CDS 55.0%
TTGGTATGTGGCACCCGATC+TGG + Chr3:72715149-72715168 MsG0380015629.01.T01:CDS 55.0%
! ACCCCATCACCGCCTTTTTC+TGG + Chr3:72713472-72713491 MsG0380015629.01.T01:CDS 55.0%
! GGAGAATAGCATCGAAGGGC+AGG - Chr3:72715176-72715195 None:intergenic 55.0%
ACTATGCTGCGCCGCCTTTC+TGG + Chr3:72712950-72712969 MsG0380015629.01.T01:CDS 60.0%
AGAAAGGCGGCGCAGCATAG+TGG - Chr3:72712951-72712970 None:intergenic 60.0%
ATCGAAGGGCAGGCCCAGAT+CGG - Chr3:72715166-72715185 None:intergenic 60.0%
ATGGAACCGAGGTTCCGGGA+TGG + Chr3:72712808-72712827 MsG0380015629.01.T01:intron 60.0%
TCGAAGGGCAGGCCCAGATC+GGG - Chr3:72715165-72715184 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72712309 72716048 72712309 ID=MsG0380015629.01;Name=MsG0380015629.01
Chr3 mRNA 72712309 72716048 72712309 ID=MsG0380015629.01.T01;Parent=MsG0380015629.01;Name=MsG0380015629.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0.83|0.71|1|1|1|7|281|746
Chr3 exon 72712309 72712818 72712309 ID=MsG0380015629.01.T01:exon:729;Parent=MsG0380015629.01.T01
Chr3 exon 72712875 72713672 72712875 ID=MsG0380015629.01.T01:exon:730;Parent=MsG0380015629.01.T01
Chr3 exon 72714186 72714241 72714186 ID=MsG0380015629.01.T01:exon:731;Parent=MsG0380015629.01.T01
Chr3 exon 72714335 72714568 72714335 ID=MsG0380015629.01.T01:exon:732;Parent=MsG0380015629.01.T01
Chr3 exon 72714692 72714983 72714692 ID=MsG0380015629.01.T01:exon:733;Parent=MsG0380015629.01.T01
Chr3 exon 72715110 72715306 72715110 ID=MsG0380015629.01.T01:exon:734;Parent=MsG0380015629.01.T01
Chr3 exon 72715614 72716048 72715614 ID=MsG0380015629.01.T01:exon:735;Parent=MsG0380015629.01.T01
Chr3 CDS 72712309 72712818 72712309 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72712875 72713672 72712875 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72714186 72714241 72714186 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72714335 72714568 72714335 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72714692 72714983 72714692 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72715110 72715306 72715110 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 CDS 72715614 72715767 72715614 ID=MsG0380015629.01.T01:cds;Parent=MsG0380015629.01.T01
Chr3 three_prime_UTR 72715768 72716048 72715768 ID=MsG0380015629.01.T01:three_prime_utr;Parent=MsG0380015629.01.T01
Gene Sequence

>MsG0380015629.01.T01

ATGGAAGATCAGCATTTGTTGGAGACAAAGGAAGCAAGTTCCCAAGCGGTTGAGAAGCTGCAAGTAGATGCTTCTGCCATTCAGATTGAAGATCAGGATAAAGAGGCAAAATCTCAGAATGTTGTTCATGATGGCCCTAAGTTTGACAGTAAACTGGATGATACATCGGACGTGATAACGGATGACAATGATGGAAGGTCTAAGTCTGATACTGATGAAGAAAAAAAATTCAATGTCACCGGAGATTCTGGTTTAGCTCCGATCAACTCTGAAACTGAAATTGATAATGTTGGTAAAGAGTATTCTGGTGGTGATAAGGTGGAGGCCAACATAAATTTTGAGGCTAAAAGTGAAGAGACAAATCTAGATGAAATGCACAGATATGGACTGGATGATTTGGCTAAAGCAGAGAACAACAGTAGAGACATGGAATCCACAGATATGGATCAGAAGGCAGATGAAATTCCAAGTGAGGACAACAATTTGGACCCTGTATTTGATGGAACCGAGGACAGTCCAGGTGTGGTTGAGAAGGCAGTCGCTCTTAAAAATCTTGTAAAGGAGAAAAGTGCAGTGGCAGTCTCCACTATGCTGCGCCGCCTTTCTGGAAAAAGTGATGAAGCTGCTGTGGGTGATTTTGATGATGAAGGCAAGAATGTTTCAGATGTCTCAGAAGTTAATGAAGCCAAACTGGTTTCTGAGAAGCTAGTGGAGAAATCTGCTTGGAATCCCTTAAATTATATTAAGAAGTCATTTGATGTTGATGTGGAAAACAAAACTGATCAGAGGGATTCAGTAACAAATGGTCCATCATCACCAATAGCCATGAAAGGAAGGATTATACTGTACACCAAACTAGGGTGTCAAGAATCTAGAATATTTAGGCTATTTTTACGTACAAAAAGACTTAGGTTTGTGGAAATCAACATAGATGTATACCCTGGTAGAAAGACGGAGTTGGAGAAGATATCTGGATCTACTTCTGTTCCCAAGTTGTTTTTCAATGAAATATGTATTGGAGGCTTGAGTGAGCTTAAAAACTTGGATGAATCTGGAAAGCTTGATGAGAAGATTGACTTTCTTATTACTGAAGCACCGTTATTTGAAACCCCATCACCGCCTTTTTCTGGAGAGGATGATATTTCCATTAGTGGGGCAGTTGATGAATTGGCTCTTGTTGTACACAAAATGAAAGAATCTATTACTGTGAAAGACAGATTGTACAAAATGCGCAGGTTTACCAACTGTTTTTTGGGCTCAGACGCTTTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGCTAGAGGCTGTTGAATTTGCTCGAAAGCTTGCTGACAAATTTTTCTTTCGACATGTTCTTGATGAAAATTTATTTGAAGATGGCAATCATGTGTATCGCTTTTTGGATGATGATCCAATTGTGATGTCACAATGTTACAATATTCCAAAGGGTATTATTACCATTAATCCAAAGCCTATCGCAGAAATTGCATCAAGGCTGAGATTTCTGGCCTCTGCAATGTTCGAAGCCTATGCTATTGAAGATGGATGCCGCGTTGATTATACAAGTTTGCATGGAAGTGAGGAGTTCGGCAGGTATCTGAGAATAGTTGAAGAGCTCCAAAGAGTTGAAATATTGGATTTGTCTAGAGAAGAAAAGCTTGCTTTCTTTATTAATCTTTATAACATGATGACCATCCATGCAATCTTAATATTGGGTCATCCAGATGGAGCATTGGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATAGGTGGTTCCACCTACTCCCTTTCAGCTATTCAAAATGGAATATTGAGGGGAAACCAACGACCTCCATATAATCTTAAGAAGCCATTCGGTGCAAAAGATAAACGCTTAAAGGTTGCACTCCCTTACCCCGAGCCTATGATTCATTTTGCTTTGGTATGTGGCACCCGATCTGGGCCTGCCCTTCGATGCTATTCTCCTGGAAAAATTGACGAAGAATTATTGGATGCAACTCGCAATTTCCTGAGAAGTGGAGGTCTCGTGATTGATTTGACGGCAAAGACTGCATATGTCAGTAAGATTCTTAAATGGTATAGCATAGATTTTGGCAAAAGCGAGCTTGAGGTGATCAAGCATGTGTCAAACTATTTAGATCCAACTGACTCAGCAATATTATTGGACCTGCTTGCCTCTTCTGAATTGAAGGTTACATATCAGCCTTATGACTGGGGTTTGAACTACTAG

Protein sequence

>MsG0380015629.01.T01

MEDQHLLETKEASSQAVEKLQVDASAIQIEDQDKEAKSQNVVHDGPKFDSKLDDTSDVITDDNDGRSKSDTDEEKKFNVTGDSGLAPINSETEIDNVGKEYSGGDKVEANINFEAKSEETNLDEMHRYGLDDLAKAENNSRDMESTDMDQKADEIPSEDNNLDPVFDGTEDSPGVVEKAVALKNLVKEKSAVAVSTMLRRLSGKSDEAAVGDFDDEGKNVSDVSEVNEAKLVSEKLVEKSAWNPLNYIKKSFDVDVENKTDQRDSVTNGPSSPIAMKGRIILYTKLGCQESRIFRLFLRTKRLRFVEINIDVYPGRKTELEKISGSTSVPKLFFNEICIGGLSELKNLDESGKLDEKIDFLITEAPLFETPSPPFSGEDDISISGAVDELALVVHKMKESITVKDRLYKMRRFTNCFLGSDALDFLSEDQYLERLEAVEFARKLADKFFFRHVLDENLFEDGNHVYRFLDDDPIVMSQCYNIPKGIITINPKPIAEIASRLRFLASAMFEAYAIEDGCRVDYTSLHGSEEFGRYLRIVEELQRVEILDLSREEKLAFFINLYNMMTIHAILILGHPDGALERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDKRLKVALPYPEPMIHFALVCGTRSGPALRCYSPGKIDEELLDATRNFLRSGGLVIDLTAKTAYVSKILKWYSIDFGKSELEVIKHVSNYLDPTDSAILLDLLASSELKVTYQPYDWGLNY*