AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022711.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022711.01.T01 MTR_4g094380 87.838 74 9 0 110 183 156 229 4.55e-38 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022711.01.T01 AT3G60360 60.606 66 26 0 118 183 163 228 3.25e-23 92.4

Find 39 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTACCTCATACAAAAT+TGG 0.225866 4:+75735392 None:intergenic
TGTTCTGTACAGTAATATTT+TGG 0.231169 4:-75736799 MsG0480022711.01.T01:CDS
AATATTCCTGATAATATTAA+AGG 0.257992 4:-75737033 MsG0480022711.01.T01:CDS
TCATTGTGTTAAATCATAAA+AGG 0.264423 4:+75735496 None:intergenic
ACTTTACCTTTAATATTATC+AGG 0.296660 4:+75737027 None:intergenic
TAAAGGTAAAGTCCTACATT+TGG 0.372233 4:-75737016 MsG0480022711.01.T01:CDS
ATAGGTATGGGTAAGGTAAC+TGG 0.388550 4:-75738542 None:intergenic
CTAGAAATCCGGCATGGTGC+TGG 0.395015 4:+75735901 None:intergenic
GGCACTGAAGAAGGAGTTGC+AGG 0.398896 4:-75735776 MsG0480022711.01.T01:intron
TATCATCATCTATAAAATGT+AGG 0.403927 4:-75737116 MsG0480022711.01.T01:CDS
TCCTGTCATGCGACGGAAGT+TGG 0.426643 4:-75735458 MsG0480022711.01.T01:three_prime_UTR
AGAGAAAGTCTACATGGATA+TGG 0.427839 4:-75735797 MsG0480022711.01.T01:CDS
TATGGGTAAGGTAACTGGTA+TGG 0.430030 4:-75738537 MsG0480022711.01.T01:CDS
TGTATACCGGTCTACCGGTT+GGG 0.433095 4:+75735619 None:intergenic
ATGGGTAAGGTAACTGGTAT+GGG 0.458173 4:-75738536 MsG0480022711.01.T01:CDS
GATGAAATCGTCAACCCAAC+CGG 0.458704 4:-75735633 MsG0480022711.01.T01:CDS
TCCAACTTCCGTCGCATGAC+AGG 0.462596 4:+75735457 None:intergenic
CATGGATATGGCACTGAAGA+AGG 0.470703 4:-75735785 MsG0480022711.01.T01:CDS
CCATGTAGACTTTCTCTAGC+TGG 0.476669 4:+75735803 None:intergenic
ATCATCATCTATAAAATGTA+GGG 0.478989 4:-75737115 MsG0480022711.01.T01:CDS
CGTCAACCCAACCGGTAGAC+CGG 0.488357 4:-75735625 MsG0480022711.01.T01:CDS
TAAGGTAACTGGTATGGGTA+AGG 0.491952 4:-75738531 MsG0480022711.01.T01:intron
TCAGCACGCCACTTGTATAC+CGG 0.511012 4:+75735606 None:intergenic
TAGAAATCCGGCATGGTGCT+GGG 0.512574 4:+75735902 None:intergenic
ATCTATAAAATGTAGGGAAG+AGG 0.523500 4:-75737109 MsG0480022711.01.T01:CDS
CCAGCTAGAGAAAGTCTACA+TGG 0.523733 4:-75735803 MsG0480022711.01.T01:CDS
TTGTATACCGGTCTACCGGT+TGG 0.532048 4:+75735618 None:intergenic
GAGTCTTCAAAGCCAAATGT+AGG 0.535914 4:+75737004 None:intergenic
TTGTTTGTCTAAAATTCTGT+TGG 0.539642 4:-75735419 MsG0480022711.01.T01:three_prime_UTR
TATAAGAATAGGTATGGGTA+AGG 0.544859 4:-75738549 None:intergenic
ATCAGGAATATTGTCAGAAG+TGG 0.555454 4:+75737044 None:intergenic
CTTGGTTCCCAGCACCATGC+CGG 0.559893 4:-75735909 MsG0480022711.01.T01:CDS
CTTACAAAGAGTTGCAAGCA+AGG 0.563371 4:-75735840 MsG0480022711.01.T01:CDS
GGAATATTGTCAGAAGTGGA+TGG 0.588001 4:+75737048 None:intergenic
CCACTTGTATACCGGTCTAC+CGG 0.609261 4:+75735614 None:intergenic
TAATTACTCCTGTCATGCGA+CGG 0.643906 4:-75735465 MsG0480022711.01.T01:three_prime_UTR
TAATGGACACACCAAAGGGT+CGG 0.653285 4:+75736751 None:intergenic
CCGGTAGACCGGTATACAAG+TGG 0.669014 4:-75735614 MsG0480022711.01.T01:CDS
ACATTTCTAGAAATCCGGCA+TGG 0.690271 4:+75735895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCCTGATAATATTAA+AGG - Chr4:75736862-75736881 MsG0480022711.01.T01:intron 15.0%
!!! AATCTATTATTTTTTGAAGT+AGG - Chr4:75735882-75735901 MsG0480022711.01.T01:CDS 15.0%
!! AAAATCAGATTATAAGTAAG+GGG - Chr4:75735922-75735941 MsG0480022711.01.T01:CDS 20.0%
!! AATGTGATTTAATTCAAAAC+AGG - Chr4:75736479-75736498 MsG0480022711.01.T01:intron 20.0%
!! ACAATAAATGCTTAAGTATT+AGG - Chr4:75737072-75737091 MsG0480022711.01.T01:CDS 20.0%
!! ACTTTACCTTTAATATTATC+AGG + Chr4:75736871-75736890 None:intergenic 20.0%
!! ATCATCATCTATAAAATGTA+GGG - Chr4:75736780-75736799 MsG0480022711.01.T01:CDS 20.0%
!! ATGTGATTTAATTCAAAACA+GGG - Chr4:75736480-75736499 MsG0480022711.01.T01:intron 20.0%
!! ATTTGATAGACAAATTAAAC+AGG - Chr4:75737380-75737399 MsG0480022711.01.T01:intron 20.0%
!! CAAAATATGTAATATACATG+CGG + Chr4:75736560-75736579 None:intergenic 20.0%
!! CATGAAAATATGATTCAATA+TGG + Chr4:75737837-75737856 None:intergenic 20.0%
!! GAAAATCAGATTATAAGTAA+GGG - Chr4:75735921-75735940 MsG0480022711.01.T01:CDS 20.0%
!! TAAATTACCTCATACAAAAT+TGG + Chr4:75738506-75738525 None:intergenic 20.0%
!! TATCATCATCTATAAAATGT+AGG - Chr4:75736779-75736798 MsG0480022711.01.T01:CDS 20.0%
!! TCATTGTGTTAAATCATAAA+AGG + Chr4:75738402-75738421 None:intergenic 20.0%
!! TTTGATAGACAAATTAAACA+GGG - Chr4:75737381-75737400 MsG0480022711.01.T01:intron 20.0%
!!! AAAAAACATTTCTAGAAATC+CGG + Chr4:75738008-75738027 None:intergenic 20.0%
!!! CTATTTAGATTTTAGATGTA+AGG - Chr4:75736607-75736626 MsG0480022711.01.T01:intron 20.0%
!!! GAAACTGATTTAATTAAACA+TGG + Chr4:75735529-75735548 None:intergenic 20.0%
!!! GAAGTTTTTTTTTTTTGAAC+AGG + Chr4:75736243-75736262 None:intergenic 20.0%
! ATAACAAGTAACAAGAATAC+AGG + Chr4:75736716-75736735 None:intergenic 25.0%
! CGAAAATCAGATTATAAGTA+AGG - Chr4:75735920-75735939 MsG0480022711.01.T01:CDS 25.0%
! GTTCTTAATTAGATATGTCA+TGG + Chr4:75735473-75735492 None:intergenic 25.0%
! TATATGATCAGAAAAATGGT+AGG - Chr4:75738221-75738240 MsG0480022711.01.T01:intron 25.0%
! TATCAATGACAATTAAGAAG+TGG - Chr4:75735494-75735513 MsG0480022711.01.T01:three_prime_UTR 25.0%
! TCCATATATGATCAGAAAAA+TGG - Chr4:75738217-75738236 MsG0480022711.01.T01:intron 25.0%
! TCCTTATTCGACTTAAATAT+TGG + Chr4:75737422-75737441 None:intergenic 25.0%
! TGCATATGTAAAGACTAAAA+CGG + Chr4:75738177-75738196 None:intergenic 25.0%
! TGTTTACGTATATCTTGTTA+TGG - Chr4:75737332-75737351 MsG0480022711.01.T01:intron 25.0%
! TTAAACAGGGAAAAATAGAA+TGG - Chr4:75737394-75737413 MsG0480022711.01.T01:intron 25.0%
!! AATCATATTTTCATGCTACT+GGG - Chr4:75737842-75737861 MsG0480022711.01.T01:intron 25.0%
!! ACTAAATAATTCTAGGGATA+TGG - Chr4:75736981-75737000 MsG0480022711.01.T01:intron 25.0%
!! CGCATGTATATTACATATTT+TGG - Chr4:75736558-75736577 MsG0480022711.01.T01:intron 25.0%
!! TGTTCTGTACAGTAATATTT+TGG - Chr4:75737096-75737115 MsG0480022711.01.T01:CDS 25.0%
!! TTGTTTGTCTAAAATTCTGT+TGG - Chr4:75738476-75738495 MsG0480022711.01.T01:intron 25.0%
!!! ACCATTTTTCTGATCATATA+TGG + Chr4:75738221-75738240 None:intergenic 25.0%
!!! ATGTTTTTTTTTTCTTGCAC+AGG - Chr4:75738019-75738038 MsG0480022711.01.T01:intron 25.0%
!!! ATTTTTTGAAGTAGGATGAT+GGG - Chr4:75735890-75735909 MsG0480022711.01.T01:CDS 25.0%
!!! TACTCCTTTCTTATTTCTAT+GGG - Chr4:75736356-75736375 MsG0480022711.01.T01:intron 25.0%
!!! TATTTTTTGAAGTAGGATGA+TGG - Chr4:75735889-75735908 MsG0480022711.01.T01:CDS 25.0%
AGATTATAAGTAAGGGGTTT+GGG - Chr4:75735928-75735947 MsG0480022711.01.T01:CDS 30.0%
ATAATCTAAGTCTGCATTGA+AGG - Chr4:75737535-75737554 MsG0480022711.01.T01:intron 30.0%
ATCTATAAAATGTAGGGAAG+AGG - Chr4:75736786-75736805 MsG0480022711.01.T01:CDS 30.0%
ATGGAAAAACTTTATCGACA+CGG + Chr4:75737234-75737253 None:intergenic 30.0%
CAAGATGAAAAAAGAACGAA+TGG + Chr4:75737970-75737989 None:intergenic 30.0%
CATAGAAATAAGAAAGGAGT+AGG + Chr4:75736357-75736376 None:intergenic 30.0%
CTGTTCTATTCTTCTGTAAA+TGG + Chr4:75735978-75735997 None:intergenic 30.0%
GAAATGATGCAATAAAGACA+AGG + Chr4:75735741-75735760 None:intergenic 30.0%
GAATACAGCAATTAAAGTGT+AGG - Chr4:75735410-75735429 MsG0480022711.01.T01:three_prime_UTR 30.0%
GACAATTTCATCAAGAAAGT+AGG - Chr4:75737512-75737531 MsG0480022711.01.T01:intron 30.0%
GAGAAGAAAAGAATATGCTT+TGG - Chr4:75736164-75736183 MsG0480022711.01.T01:intron 30.0%
GATGATAAAAAAGTTGACTG+AGG + Chr4:75736766-75736785 None:intergenic 30.0%
GCATATGTAAAGACTAAAAC+GGG + Chr4:75738176-75738195 None:intergenic 30.0%
GCCAATATTTAAGTCGAATA+AGG - Chr4:75737418-75737437 MsG0480022711.01.T01:intron 30.0%
GTCGGTACTAAATAATTCTA+GGG - Chr4:75736975-75736994 MsG0480022711.01.T01:intron 30.0%
TAAAGGTAAAGTCCTACATT+TGG - Chr4:75736879-75736898 MsG0480022711.01.T01:intron 30.0%
TCTTAAGGTCAAATAAGAAG+TGG + Chr4:75735807-75735826 None:intergenic 30.0%
TGTCGGTACTAAATAATTCT+AGG - Chr4:75736974-75736993 MsG0480022711.01.T01:intron 30.0%
TTCTTGAATAAGTGTAGTGT+AGG - Chr4:75735584-75735603 MsG0480022711.01.T01:exon 30.0%
TTCTTGATGAAATTGTCTAC+TGG + Chr4:75737509-75737528 None:intergenic 30.0%
TTTACAGAAGAATAGAACAG+AGG - Chr4:75735978-75735997 MsG0480022711.01.T01:intron 30.0%
! ATTTGTTTGGCTCATATCTT+TGG - Chr4:75737199-75737218 MsG0480022711.01.T01:intron 30.0%
! CATATTCTTTTCTTCTCTCA+CGG + Chr4:75736161-75736180 None:intergenic 30.0%
! GAATCATATTTTCATGCTAC+TGG - Chr4:75737841-75737860 MsG0480022711.01.T01:intron 30.0%
! TCGCTTTCTGAAAATTTGTT+TGG - Chr4:75737186-75737205 MsG0480022711.01.T01:intron 30.0%
! TGGTTATCCAATTTTGTATG+AGG - Chr4:75738496-75738515 MsG0480022711.01.T01:intron 30.0%
!! AATGTTGGTGGTCATAATTA+GGG - Chr4:75737729-75737748 MsG0480022711.01.T01:intron 30.0%
!! AGTCAGGTTTTATCGAATAT+GGG + Chr4:75736281-75736300 None:intergenic 30.0%
!! CTACTCCTTTCTTATTTCTA+TGG - Chr4:75736355-75736374 MsG0480022711.01.T01:intron 30.0%
!!! AGTTGCAGGTATTGATATTT+TGG - Chr4:75738133-75738152 MsG0480022711.01.T01:intron 30.0%
!!! CAGGCTTCTAAATTTTTTGT+CGG - Chr4:75736957-75736976 MsG0480022711.01.T01:intron 30.0%
!!! CATTCGTTCTTTTTTCATCT+TGG - Chr4:75737968-75737987 MsG0480022711.01.T01:intron 30.0%
!!! GCTATTAGTTTTCTGCTTTT+TGG - Chr4:75737811-75737830 MsG0480022711.01.T01:intron 30.0%
AAGTAACAAGAATACAGGAG+AGG + Chr4:75736711-75736730 None:intergenic 35.0%
AATAGAACAGAGGATGAACT+CGG - Chr4:75735988-75736007 MsG0480022711.01.T01:intron 35.0%
AATCCAACAATCGTGAATGT+TGG + Chr4:75735674-75735693 None:intergenic 35.0%
AGAGAAAGTCTACATGGATA+TGG - Chr4:75738098-75738117 MsG0480022711.01.T01:intron 35.0%
AGTAACAAGAATACAGGAGA+GGG + Chr4:75736710-75736729 None:intergenic 35.0%
ATAAGAAGTGGAAAAACGAG+TGG + Chr4:75735795-75735814 None:intergenic 35.0%
ATAGGGTGTGATTACTATTG+AGG + Chr4:75737261-75737280 None:intergenic 35.0%
ATCAGGAATATTGTCAGAAG+TGG + Chr4:75736854-75736873 None:intergenic 35.0%
ATTAGGGAGATTGAATGTTG+TGG - Chr4:75737695-75737714 MsG0480022711.01.T01:intron 35.0%
CAGATTATAAGTAAGGGGTT+TGG - Chr4:75735927-75735946 MsG0480022711.01.T01:CDS 35.0%
CGGAGATGAAAAAATTGCAA+TGG + Chr4:75737127-75737146 None:intergenic 35.0%
GAATGTTCATATCTGAGCAA+TGG - Chr4:75735858-75735877 MsG0480022711.01.T01:CDS 35.0%
GATGCCCATAGAAATAAGAA+AGG + Chr4:75736363-75736382 None:intergenic 35.0%
GATTATAAGTAAGGGGTTTG+GGG - Chr4:75735929-75735948 MsG0480022711.01.T01:CDS 35.0%
TCAAACCTTGTGTTTGGATA+GGG + Chr4:75737278-75737297 None:intergenic 35.0%
TGATTACTATTGAGGCTTCA+TGG + Chr4:75737253-75737272 None:intergenic 35.0%
TTGCATCATTTCACTAAAGC+CGG - Chr4:75735749-75735768 MsG0480022711.01.T01:intron 35.0%
! ACTAAAACGGGCTCATAATA+AGG + Chr4:75738164-75738183 None:intergenic 35.0%
! GATGTTTTCTGTGATTACAC+AGG - Chr4:75736938-75736957 MsG0480022711.01.T01:intron 35.0%
!! ATTGTAATGGACACACCAAA+GGG + Chr4:75737151-75737170 None:intergenic 35.0%
!! CAGTCAGGTTTTATCGAATA+TGG + Chr4:75736282-75736301 None:intergenic 35.0%
!! GAATGTTGGTGGTCATAATT+AGG - Chr4:75737728-75737747 MsG0480022711.01.T01:intron 35.0%
!! TGAAGGAGATTGCTTGTTAT+TGG - Chr4:75737552-75737571 MsG0480022711.01.T01:intron 35.0%
AAACACAAGGTTTGAGGATG+TGG - Chr4:75737283-75737302 MsG0480022711.01.T01:intron 40.0%
AAGATGCTTGAACGACAGTA+AGG - Chr4:75735823-75735842 MsG0480022711.01.T01:CDS 40.0%
ACAATGACTTTGCCCAATGA+AGG + Chr4:75736635-75736654 None:intergenic 40.0%
ACATCCTCAAACCTTGTGTT+TGG + Chr4:75737284-75737303 None:intergenic 40.0%
ACTGTCGTTCAAGCATCTTA+AGG + Chr4:75735822-75735841 None:intergenic 40.0%
AGATGCTTGAACGACAGTAA+GGG - Chr4:75735824-75735843 MsG0480022711.01.T01:CDS 40.0%
AGATGGATCAGGTTTCATAC+TGG - Chr4:75737640-75737659 MsG0480022711.01.T01:intron 40.0%
AGATGTAAGGTCCCTTCATT+GGG - Chr4:75736620-75736639 MsG0480022711.01.T01:intron 40.0%
ATCAGGTTTCATACTGGTGA+GGG - Chr4:75737646-75737665 MsG0480022711.01.T01:intron 40.0%
ATGGGTAAGGTAACTGGTAT+GGG - Chr4:75735359-75735378 MsG0480022711.01.T01:three_prime_UTR 40.0%
CAATGACTTTGCCCAATGAA+GGG + Chr4:75736634-75736653 None:intergenic 40.0%
CAGTTGCTACATCACAATAC+AGG + Chr4:75737908-75737927 None:intergenic 40.0%
CCATTGCTGACAATATAACG+AGG - Chr4:75736097-75736116 MsG0480022711.01.T01:intron 40.0%
CCTCGTTATATTGTCAGCAA+TGG + Chr4:75736100-75736119 None:intergenic 40.0%
CTATCCAAACACAAGGTTTG+AGG - Chr4:75737277-75737296 MsG0480022711.01.T01:intron 40.0%
CTCAAACCTTGTGTTTGGAT+AGG + Chr4:75737279-75737298 None:intergenic 40.0%
CTTACAAAGAGTTGCAAGCA+AGG - Chr4:75738055-75738074 MsG0480022711.01.T01:intron 40.0%
GACTGTAACCAACTTGTGAT+CGG - Chr4:75736297-75736316 MsG0480022711.01.T01:intron 40.0%
GAGTCAGCCAATCATTGTAA+TGG + Chr4:75737164-75737183 None:intergenic 40.0%
GAGTCTTCAAAGCCAAATGT+AGG + Chr4:75736894-75736913 None:intergenic 40.0%
GGAAAATACTATCCACTGCT+TGG - Chr4:75735950-75735969 MsG0480022711.01.T01:CDS 40.0%
GGAATATTGTCAGAAGTGGA+TGG + Chr4:75736850-75736869 None:intergenic 40.0%
GGTGTGTCCATTACAATGAT+TGG - Chr4:75737154-75737173 MsG0480022711.01.T01:intron 40.0%
GTAACAAGAATACAGGAGAG+GGG + Chr4:75736709-75736728 None:intergenic 40.0%
TAAGAAAGGAGTAGGATCAC+TGG + Chr4:75736349-75736368 None:intergenic 40.0%
TAAGGTAACTGGTACGATAG+TGG - Chr4:75735382-75735401 MsG0480022711.01.T01:three_prime_UTR 40.0%
TAAGGTAACTGGTATGGGTA+AGG - Chr4:75735364-75735383 MsG0480022711.01.T01:three_prime_UTR 40.0%
TAATTACTCCTGTCATGCGA+CGG - Chr4:75738430-75738449 MsG0480022711.01.T01:intron 40.0%
TACATGCGGAATCGTATACA+TGG + Chr4:75736546-75736565 None:intergenic 40.0%
TAGATGTAAGGTCCCTTCAT+TGG - Chr4:75736619-75736638 MsG0480022711.01.T01:intron 40.0%
TATGGGTAAGGTAACTGGTA+TGG - Chr4:75735376-75735395 MsG0480022711.01.T01:three_prime_UTR 40.0%
TGATCTTACAAACAGCGGTT+GGG - Chr4:75736440-75736459 MsG0480022711.01.T01:intron 40.0%
TTGTCTATCAAATGCTACCC+AGG + Chr4:75737373-75737392 None:intergenic 40.0%
! ACATTTCTAGAAATCCGGCA+TGG + Chr4:75738003-75738022 None:intergenic 40.0%
!! ATCACAAGTTGGTTACAGTC+AGG + Chr4:75736297-75736316 None:intergenic 40.0%
!! CATAGAGGTACTTGGATTGT+AGG - Chr4:75736391-75736410 MsG0480022711.01.T01:intron 40.0%
!! CATTGTAATGGACACACCAA+AGG + Chr4:75737152-75737171 None:intergenic 40.0%
!! GATTGCTTGTTATTGGTGAC+TGG - Chr4:75737559-75737578 MsG0480022711.01.T01:intron 40.0%
!! GGTTTTATCGAATATGGGAC+AGG + Chr4:75736276-75736295 None:intergenic 40.0%
!!! TTTTTTCATCTCCGACCCTT+TGG - Chr4:75737133-75737152 MsG0480022711.01.T01:intron 40.0%
ACTGGTATGGGTAAGGTAAC+TGG - Chr4:75735371-75735390 MsG0480022711.01.T01:three_prime_UTR 45.0%
AGCAGGTCTAATCAAGTCTC+CGG + Chr4:75735771-75735790 None:intergenic 45.0%
AGGAACAAACAAACCCGTAG+AGG - Chr4:75736059-75736078 MsG0480022711.01.T01:intron 45.0%
ATCATGCGCGAGAGATGAAA+TGG - Chr4:75736214-75736233 MsG0480022711.01.T01:intron 45.0%
ATCCATCATGACATTCCCTC+GGG + Chr4:75737462-75737481 None:intergenic 45.0%
CAACCGCTGTTTGTAAGATC+AGG + Chr4:75736441-75736460 None:intergenic 45.0%
CATCCATCATGACATTCCCT+CGG + Chr4:75737463-75737482 None:intergenic 45.0%
CCAACAATCGTGAATGTTGG+AGG + Chr4:75735671-75735690 None:intergenic 45.0%
CCAGCTAGAGAAAGTCTACA+TGG - Chr4:75738092-75738111 MsG0480022711.01.T01:intron 45.0%
CCATGTAGACTTTCTCTAGC+TGG + Chr4:75738095-75738114 None:intergenic 45.0%
CCTCCAACATTCACGATTGT+TGG - Chr4:75735668-75735687 MsG0480022711.01.T01:intron 45.0%
CCTCCTGATCTTACAAACAG+CGG - Chr4:75736435-75736454 MsG0480022711.01.T01:intron 45.0%
CGCTTACAATCATCTGCTTG+TGG - Chr4:75735622-75735641 MsG0480022711.01.T01:CDS 45.0%
CTGATCTTACAAACAGCGGT+TGG - Chr4:75736439-75736458 MsG0480022711.01.T01:intron 45.0%
GATCAGGTTTCATACTGGTG+AGG - Chr4:75737645-75737664 MsG0480022711.01.T01:intron 45.0%
GATGAAATCGTCAACCCAAC+CGG - Chr4:75738262-75738281 MsG0480022711.01.T01:intron 45.0%
GATGCTTGAACGACAGTAAG+GGG - Chr4:75735825-75735844 MsG0480022711.01.T01:CDS 45.0%
GGAACAAACAAACCCGTAGA+GGG - Chr4:75736060-75736079 MsG0480022711.01.T01:intron 45.0%
GTAGCTAGACAGAATGTTGG+TGG - Chr4:75737717-75737736 MsG0480022711.01.T01:intron 45.0%
GTCTACTGGATCAACTCTGA+TGG + Chr4:75737495-75737514 None:intergenic 45.0%
GTGGTAGCTAGACAGAATGT+TGG - Chr4:75737714-75737733 MsG0480022711.01.T01:intron 45.0%
GTTTGTTTGTTCCTGGCATG+TGG + Chr4:75736053-75736072 None:intergenic 45.0%
TCACACCCTATCCAAACACA+AGG - Chr4:75737270-75737289 MsG0480022711.01.T01:intron 45.0%
TCAGGTTTCATACTGGTGAG+GGG - Chr4:75737647-75737666 MsG0480022711.01.T01:intron 45.0%
TCCATCTACAACCTAAGCTC+TGG + Chr4:75737627-75737646 None:intergenic 45.0%
TGTGATCACCGATCACAAGT+TGG + Chr4:75736308-75736327 None:intergenic 45.0%
TGTTTGTAAGATCAGGAGGC+AGG + Chr4:75736434-75736453 None:intergenic 45.0%
! AACTCGGTGAACTGAAACAG+TGG - Chr4:75736004-75736023 MsG0480022711.01.T01:intron 45.0%
! ACCAGAGCTTAGGTTGTAGA+TGG - Chr4:75737623-75737642 MsG0480022711.01.T01:intron 45.0%
! CATGGATATGGCACTGAAGA+AGG - Chr4:75738110-75738129 MsG0480022711.01.T01:intron 45.0%
! GCTTAGGTTGTAGATGGATC+AGG - Chr4:75737629-75737648 MsG0480022711.01.T01:intron 45.0%
! GGCATTTTTCATTGACGCCT+GGG - Chr4:75737353-75737372 MsG0480022711.01.T01:intron 45.0%
! TAATGGACACACCAAAGGGT+CGG + Chr4:75737147-75737166 None:intergenic 45.0%
! TCTACGGGTTTGTTTGTTCC+TGG + Chr4:75736060-75736079 None:intergenic 45.0%
! TGGCATTTTTCATTGACGCC+TGG - Chr4:75737352-75737371 MsG0480022711.01.T01:intron 45.0%
!! CTGCTGTACTAGGTTGGTTT+GGG - Chr4:75737670-75737689 MsG0480022711.01.T01:intron 45.0%
!! CTTGTTATTGGTGACTGGCA+AGG - Chr4:75737564-75737583 MsG0480022711.01.T01:intron 45.0%
!! GTAACACGCATAGAGGTACT+TGG - Chr4:75736383-75736402 MsG0480022711.01.T01:intron 45.0%
!! TAGGTTGGTTTGGGGGATTA+GGG - Chr4:75737679-75737698 MsG0480022711.01.T01:intron 45.0%
!! TCGAATAAGGAGTGCCAACA+TGG - Chr4:75737431-75737450 MsG0480022711.01.T01:intron 45.0%
!! TGCTGTACTAGGTTGGTTTG+GGG - Chr4:75737671-75737690 MsG0480022711.01.T01:intron 45.0%
AAGATCAGGAGGCAGGATGT+GGG + Chr4:75736427-75736446 None:intergenic 50.0%
AAGCAGAAGAACCACATGCC+AGG - Chr4:75736039-75736058 MsG0480022711.01.T01:intron 50.0%
AGAATACAGGAGAGGGGAGA+AGG + Chr4:75736703-75736722 None:intergenic 50.0%
ATCAACTCTGATGGCCTCCT+CGG + Chr4:75737486-75737505 None:intergenic 50.0%
ATCATGACATTCCCTCGGGA+AGG + Chr4:75737458-75737477 None:intergenic 50.0%
CCACTTGTATACCGGTCTAC+CGG + Chr4:75738284-75738303 None:intergenic 50.0%
CCGCTGTTTGTAAGATCAGG+AGG + Chr4:75736438-75736457 None:intergenic 50.0%
CTGTAAATGGCTCCAAGCAG+TGG + Chr4:75735965-75735984 None:intergenic 50.0%
GAATACAGGAGAGGGGAGAA+GGG + Chr4:75736702-75736721 None:intergenic 50.0%
GTGGAAAAACGAGTGGAAGC+AGG + Chr4:75735788-75735807 None:intergenic 50.0%
TAAGATCAGGAGGCAGGATG+TGG + Chr4:75736428-75736447 None:intergenic 50.0%
TAGAAATCCGGCATGGTGCT+GGG + Chr4:75737996-75738015 None:intergenic 50.0%
TCAGCACGCCACTTGTATAC+CGG + Chr4:75738292-75738311 None:intergenic 50.0%
TCTCTCGCACCCTACTTTGT+CGG + Chr4:75736137-75736156 None:intergenic 50.0%
TGACTGGCAAGGAGGAACAA+GGG - Chr4:75737575-75737594 MsG0480022711.01.T01:intron 50.0%
TTCCCGAGGGAATGTCATGA+TGG - Chr4:75737457-75737476 MsG0480022711.01.T01:intron 50.0%
TTGTATACCGGTCTACCGGT+TGG + Chr4:75738280-75738299 None:intergenic 50.0%
! GTTATTGGTGACTGGCAAGG+AGG - Chr4:75737567-75737586 MsG0480022711.01.T01:intron 50.0%
! TGTATACCGGTCTACCGGTT+GGG + Chr4:75738279-75738298 None:intergenic 50.0%
!! CTAGGTTGGTTTGGGGGATT+AGG - Chr4:75737678-75737697 MsG0480022711.01.T01:intron 50.0%
!! GAATGTCATGATGGATGCCG+AGG - Chr4:75737466-75737485 MsG0480022711.01.T01:intron 50.0%
!! GCTGCTGTACTAGGTTGGTT+TGG - Chr4:75737669-75737688 MsG0480022711.01.T01:intron 50.0%
!! GCTGTACTAGGTTGGTTTGG+GGG - Chr4:75737672-75737691 MsG0480022711.01.T01:intron 50.0%
AACAAACCCGTAGAGGGAGC+AGG - Chr4:75736066-75736085 MsG0480022711.01.T01:intron 55.0%
AACACTGCCTGCTCCCTCTA+CGG + Chr4:75736076-75736095 None:intergenic 55.0%
ACTGGCAAGGAGGAACAAGG+GGG - Chr4:75737577-75737596 MsG0480022711.01.T01:intron 55.0%
AGGGGAGAAGGGAGAAGACA+AGG + Chr4:75736691-75736710 None:intergenic 55.0%
CCGGTAGACCGGTATACAAG+TGG - Chr4:75738281-75738300 MsG0480022711.01.T01:intron 55.0%
CTAGAAATCCGGCATGGTGC+TGG + Chr4:75737997-75738016 None:intergenic 55.0%
GACTGGCAAGGAGGAACAAG+GGG - Chr4:75737576-75737595 MsG0480022711.01.T01:intron 55.0%
GCAGTGCTTCACCAGAGCTT+AGG - Chr4:75737613-75737632 MsG0480022711.01.T01:intron 55.0%
GTGACTGGCAAGGAGGAACA+AGG - Chr4:75737574-75737593 MsG0480022711.01.T01:intron 55.0%
TCCAACTTCCGTCGCATGAC+AGG + Chr4:75738441-75738460 None:intergenic 55.0%
TCCTGTCATGCGACGGAAGT+TGG - Chr4:75738437-75738456 MsG0480022711.01.T01:intron 55.0%
! GGCACTGAAGAAGGAGTTGC+AGG - Chr4:75738119-75738138 MsG0480022711.01.T01:intron 55.0%
! GGGCATCGTAACACGCATAG+AGG - Chr4:75736376-75736395 MsG0480022711.01.T01:intron 55.0%
!! TGTCATGATGGATGCCGAGG+AGG - Chr4:75737469-75737488 MsG0480022711.01.T01:intron 55.0%
AACAAGGGGGTGGCAGGTCT+TGG - Chr4:75737590-75737609 MsG0480022711.01.T01:intron 60.0%
ACAAGGGGGTGGCAGGTCTT+GGG - Chr4:75737591-75737610 MsG0480022711.01.T01:intron 60.0%
ACACTGCCTGCTCCCTCTAC+GGG + Chr4:75736075-75736094 None:intergenic 60.0%
AGCGCAGTCGCCGACAAAGT+AGG - Chr4:75736124-75736143 MsG0480022711.01.T01:intron 60.0%
CGTCAACCCAACCGGTAGAC+CGG - Chr4:75738270-75738289 MsG0480022711.01.T01:intron 60.0%
CTTGGTTCCCAGCACCATGC+CGG - Chr4:75737986-75738005 MsG0480022711.01.T01:intron 60.0%
GAGGGGCTGCTGTACTAGGT+TGG - Chr4:75737664-75737683 MsG0480022711.01.T01:intron 60.0%
GCCAACATGGACCTTCCCGA+GGG - Chr4:75737444-75737463 MsG0480022711.01.T01:intron 60.0%
GCGCAGTCGCCGACAAAGTA+GGG - Chr4:75736125-75736144 MsG0480022711.01.T01:intron 60.0%
TCCCTCGGGAAGGTCCATGT+TGG + Chr4:75737448-75737467 None:intergenic 60.0%
TGCCAACATGGACCTTCCCG+AGG - Chr4:75737443-75737462 MsG0480022711.01.T01:intron 60.0%
TGGTGAGGGGCTGCTGTACT+AGG - Chr4:75737660-75737679 MsG0480022711.01.T01:intron 60.0%
AGGAGGAACAAGGGGGTGGC+AGG - Chr4:75737584-75737603 MsG0480022711.01.T01:intron 65.0%
GGCAAGGAGGAACAAGGGGG+TGG - Chr4:75737580-75737599 MsG0480022711.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75735359 75738558 75735359 ID=MsG0480022711.01;Name=MsG0480022711.01
Chr4 mRNA 75735359 75738558 75735359 ID=MsG0480022711.01.T01;Parent=MsG0480022711.01;Name=MsG0480022711.01.T01;_AED=0.47;_eAED=0.59;_QI=0|0.25|0.2|1|0.25|0.2|5|234|183
Chr4 exon 75735359 75735685 75735359 ID=MsG0480022711.01.T01:exon:3292;Parent=MsG0480022711.01.T01
Chr4 exon 75735777 75735982 75735777 ID=MsG0480022711.01.T01:exon:3291;Parent=MsG0480022711.01.T01
Chr4 exon 75736763 75736823 75736763 ID=MsG0480022711.01.T01:exon:3290;Parent=MsG0480022711.01.T01
Chr4 exon 75736984 75737148 75736984 ID=MsG0480022711.01.T01:exon:3289;Parent=MsG0480022711.01.T01
Chr4 exon 75738532 75738558 75738532 ID=MsG0480022711.01.T01:exon:3288;Parent=MsG0480022711.01.T01
Chr4 CDS 75738532 75738558 75738532 ID=MsG0480022711.01.T01:cds;Parent=MsG0480022711.01.T01
Chr4 CDS 75736984 75737148 75736984 ID=MsG0480022711.01.T01:cds;Parent=MsG0480022711.01.T01
Chr4 CDS 75736763 75736823 75736763 ID=MsG0480022711.01.T01:cds;Parent=MsG0480022711.01.T01
Chr4 CDS 75735777 75735982 75735777 ID=MsG0480022711.01.T01:cds;Parent=MsG0480022711.01.T01
Chr4 CDS 75735593 75735685 75735593 ID=MsG0480022711.01.T01:cds;Parent=MsG0480022711.01.T01
Chr4 three_prime_UTR 75735359 75735592 75735359 ID=MsG0480022711.01.T01:three_prime_utr;Parent=MsG0480022711.01.T01
Gene Sequence

>MsG0480022711.01.T01

ATGGGTAAGGTAACTGGTATGGGTAAGTCAACTTTTTTATCATCATCTATAAAATGTAGGGAAGAGGCTAAAGAGTTAAAGCAACAACTGTCAAAAAGAAAAGTTCCATCCACTTCTGACAATATTCCTGATAATATTAAAGGTAAAGTCCTACATTTGGCTTTGAAGACTCTGATTTATTTTTCTCATTTTGATGTTCTGTACAGTAATATTTTGGCTAAGCCATTGCAATTTTTTCATCTCCGACCCTTTGATTTATTTATCGTCTACAAACACTCGTTATTTCCATTCGTTCTTTTTTCATCTTGGTTCCCAGCACCATGCCGGATTTCTAGAAATGTTTTTTTTTTCTTGCACAGGAAAACAGAACGATCTTACAAAGAGTTGCAAGCAAGGAAAGCTAGAGTCAGCCAGCTAGAGAAAGTCTACATGGATATGGCACTGAAGAAGGAGTTGCAGAAAAATGGTAGGAAGCGCAAACTTCGCGAAGATGAAATCGTCAACCCAACCGGTAGACCGGTATACAAGTGGCGTGCTGAAAGAAAGCGCTGA

Protein sequence

>MsG0480022711.01.T01

MGKVTGMGKSTFLSSSIKCREEAKELKQQLSKRKVPSTSDNIPDNIKGKVLHLALKTLIYFSHFDVLYSNILAKPLQFFHLRPFDLFIVYKHSLFPFVLFSSWFPAPCRISRNVFFFLHRKTERSYKELQARKARVSQLEKVYMDMALKKELQKNGRKRKLREDEIVNPTGRPVYKWRAERKR*