Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181140 | RHN81845.1 | 95.946 | 222 | 7 | 1 | 1 | 222 | 35 | 254 | 9.52e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181140 | sp|Q9M2Z4|MSBP2_ARATH | 66.667 | 210 | 62 | 4 | 5 | 213 | 4 | 206 | 3.35e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181140 | A0A396K1H3 | 95.946 | 222 | 7 | 1 | 1 | 222 | 35 | 254 | 4.55e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021240 | Msa0181140 | -0.808874 | 2.499683e-50 | -8.615850e-47 |
| Msa0081700 | Msa0181140 | -0.801070 | 1.070754e-48 | -8.615850e-47 |
| Msa0083550 | Msa0181140 | -0.804014 | 2.646666e-49 | -8.615850e-47 |
| Msa0113910 | Msa0181140 | -0.811166 | 8.020784e-51 | -8.615850e-47 |
| Msa0138340 | Msa0181140 | -0.822230 | 2.647153e-53 | -8.615850e-47 |
| Msa0147960 | Msa0181140 | -0.821811 | 3.310985e-53 | -8.615850e-47 |
| Msa0172310 | Msa0181140 | -0.808938 | 2.421519e-50 | -8.615850e-47 |
| Msa0181140 | Msa0194750 | -0.807629 | 4.603520e-50 | -8.615850e-47 |
| Msa0181140 | Msa0207150 | -0.804459 | 2.138018e-49 | -8.615850e-47 |
| Msa0181140 | Msa0236690 | -0.815259 | 1.013145e-51 | -8.615850e-47 |
| Msa0181140 | Msa0246470 | -0.821221 | 4.531058e-53 | -8.615850e-47 |
| Msa0181140 | Msa0265440 | -0.816254 | 6.078829e-52 | -8.615850e-47 |
| Msa0181140 | Msa0269430 | -0.815303 | 9.905435e-52 | -8.615850e-47 |
| Msa0181140 | Msa0269660 | -0.823527 | 1.319993e-53 | -8.615850e-47 |
| Msa0181140 | Msa0274890 | -0.800365 | 1.491094e-48 | -8.615850e-47 |
| Msa0181140 | Msa0281310 | -0.802060 | 6.712084e-49 | -8.615850e-47 |
| Msa0181140 | Msa0315010 | -0.806083 | 9.771209e-50 | -8.615850e-47 |
| Msa0181140 | Msa0323790 | -0.814384 | 1.583722e-51 | -8.615850e-47 |
| Msa0181140 | Msa0343230 | -0.817699 | 2.880366e-52 | -8.615850e-47 |
| Msa0181140 | Msa0370690 | -0.800101 | 1.688113e-48 | -8.615850e-47 |
| Msa0181140 | Msa0387300 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0181140 | Msa0388000 | -0.802045 | 6.759871e-49 | -8.615850e-47 |
| Msa0181140 | Msa0422230 | -0.817340 | 3.469990e-52 | -8.615850e-47 |
| Msa0181140 | Msa0438440 | -0.813034 | 3.140118e-51 | -8.615850e-47 |
| Msa0181140 | Msa0450230 | -0.815403 | 9.412635e-52 | -8.615850e-47 |
| Msa0181140 | Msa0474220 | -0.802136 | 6.474994e-49 | -8.615850e-47 |
| Msa0181140 | Msa0477660 | 0.810142 | 1.335271e-50 | -8.615850e-47 |
| Msa0181140 | Msa0521720 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0181140 | Msa0522730 | -0.810819 | 9.535663e-51 | -8.615850e-47 |
| Msa0181140 | Msa0524570 | -0.800976 | 1.119562e-48 | -8.615850e-47 |
| Msa0181140 | Msa0527210 | -0.813255 | 2.807426e-51 | -8.615850e-47 |
| Msa0181140 | Msa0528830 | -0.805041 | 1.616428e-49 | -8.615850e-47 |
| Msa0181140 | Msa0538050 | -0.829361 | 5.373440e-55 | -8.615850e-47 |
| Msa0181140 | Msa0548230 | -0.806963 | 6.372119e-50 | -8.615850e-47 |
| Msa0181140 | Msa0559280 | -0.812178 | 4.831827e-51 | -8.615850e-47 |
| Msa0181140 | Msa0559890 | -0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0181140 | Msa0561420 | -0.809398 | 1.930353e-50 | -8.615850e-47 |
| Msa0181140 | Msa0565530 | -0.800019 | 1.753785e-48 | -8.615850e-47 |
| Msa0181140 | Msa0567190 | -0.809957 | 1.463500e-50 | -8.615850e-47 |
| Msa0181140 | Msa0567420 | -0.805037 | 1.619343e-49 | -8.615850e-47 |
| Msa0181140 | Msa0567490 | -0.807896 | 4.039918e-50 | -8.615850e-47 |
| Msa0181140 | Msa0567530 | -0.803030 | 4.235027e-49 | -8.615850e-47 |
| Msa0181140 | Msa0568300 | -0.830114 | 3.524647e-55 | -8.615850e-47 |
| Msa0181140 | Msa0569540 | -0.800251 | 1.572973e-48 | -8.615850e-47 |
| Msa0181140 | Msa0570250 | -0.802012 | 6.866538e-49 | -8.615850e-47 |
| Msa0181140 | Msa0572730 | -0.804758 | 1.852599e-49 | -8.615850e-47 |
| Msa0181140 | Msa0585720 | -0.817943 | 2.536822e-52 | -8.615850e-47 |
| Msa0181140 | Msa0585810 | -0.806953 | 6.405018e-50 | -8.615850e-47 |
| Msa0181140 | Msa0589680 | -0.803578 | 3.261218e-49 | -8.615850e-47 |
| Msa0181140 | Msa0614020 | -0.827731 | 1.330181e-54 | -8.615850e-47 |
| Msa0181140 | Msa0625900 | -0.819025 | 1.442320e-52 | -8.615850e-47 |
| Msa0181140 | Msa0632040 | -0.828636 | 8.053699e-55 | -8.615850e-47 |
| Msa0181140 | Msa0662670 | -0.832404 | 9.637680e-56 | -8.615850e-47 |
| Msa0181140 | Msa0663580 | -0.813286 | 2.764846e-51 | -8.615850e-47 |
| Msa0181140 | Msa0663690 | -0.815803 | 7.665721e-52 | -8.615850e-47 |
| Msa0181140 | Msa0705710 | -0.803842 | 2.873968e-49 | -8.615850e-47 |
| Msa0181140 | Msa0706130 | -0.800157 | 1.644138e-48 | -8.615850e-47 |
| Msa0181140 | Msa0708870 | -0.834393 | 3.076662e-56 | -8.615850e-47 |
| Msa0181140 | Msa0744690 | -0.821280 | 4.392097e-53 | -8.615850e-47 |
| Msa0181140 | Msa0781030 | -0.814653 | 1.381104e-51 | -8.615850e-47 |
| Msa0181140 | Msa0791700 | -0.805562 | 1.257423e-49 | -8.615850e-47 |
| Msa0181140 | Msa0807170 | -0.840229 | 9.860068e-58 | -8.615850e-47 |
| Msa0181140 | Msa0840630 | -0.805226 | 1.478926e-49 | -8.615850e-47 |
| Msa0181140 | Msa0846070 | -0.821719 | 3.477174e-53 | -8.615850e-47 |
| Msa0181140 | Msa0861400 | -0.829200 | 5.878856e-55 | -8.615850e-47 |
| Msa0181140 | Msa0898090 | -0.827993 | 1.151094e-54 | -8.615850e-47 |
| Msa0181140 | Msa0906100 | -0.806327 | 8.681984e-50 | -8.615850e-47 |
| Msa0181140 | Msa0917630 | -0.819978 | 8.743193e-53 | -8.615850e-47 |
| Msa0181140 | Msa0924690 | -0.806733 | 7.126150e-50 | -8.615850e-47 |
| Msa0181140 | Msa0963800 | -0.814974 | 1.172024e-51 | -8.615850e-47 |
| Msa0181140 | Msa0967900 | -0.816036 | 6.799940e-52 | -8.615850e-47 |
| Msa0181140 | Msa1035790 | -0.815462 | 9.132281e-52 | -8.615850e-47 |
| Msa0181140 | Msa1038230 | -0.811318 | 7.432615e-51 | -8.615850e-47 |
| Msa0181140 | Msa1039860 | -0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0181140 | Msa1084210 | -0.824393 | 8.272222e-54 | -8.615850e-47 |
| Msa0181140 | Msa1093420 | 0.801932 | 7.130488e-49 | -8.615850e-47 |
| Msa0181140 | Msa1126980 | -0.800164 | 1.638329e-48 | -8.615850e-47 |
| Msa0181140 | Msa1128230 | -0.835368 | 1.748198e-56 | -8.615850e-47 |
| Msa0181140 | Msa1143060 | -0.819898 | 9.120636e-53 | -8.615850e-47 |
| Msa0181140 | Msa1223060 | -0.809095 | 2.240947e-50 | -8.615850e-47 |
| Msa0181140 | Msa1223600 | -0.805987 | 1.023878e-49 | -8.615850e-47 |
| Msa0181140 | Msa1228600 | -0.815185 | 1.052403e-51 | -8.615850e-47 |
| Msa0181140 | Msa1229880 | -0.806910 | 6.538917e-50 | -8.615850e-47 |
| Msa0181140 | Msa1239870 | 0.819078 | 1.402909e-52 | -8.615850e-47 |
| Msa0181140 | Msa1269370 | -0.832237 | 1.060338e-55 | -8.615850e-47 |
| Msa0181140 | Msa1313690 | -0.808793 | 2.600897e-50 | -8.615850e-47 |
| Msa0181140 | Msa1326800 | -0.807196 | 5.688535e-50 | -8.615850e-47 |
| Msa0181140 | Msa1327690 | -0.836861 | 7.299535e-57 | -8.615850e-47 |
| Msa0181140 | Msa1348860 | -0.803035 | 4.225075e-49 | -8.615850e-47 |
| Msa0181140 | Msa1368800 | -0.810097 | 1.365267e-50 | -8.615850e-47 |
| Msa0181140 | Msa1369220 | -0.828030 | 1.127512e-54 | -8.615850e-47 |
| Msa0181140 | Msa1371540 | -0.812338 | 4.457302e-51 | -8.615850e-47 |
| Msa0181140 | Msa1372570 | -0.817438 | 3.298086e-52 | -8.615850e-47 |
| Msa0181140 | Msa1377980 | -0.807457 | 5.008545e-50 | -8.615850e-47 |
| Msa0181140 | Msa1382100 | -0.823466 | 1.364597e-53 | -8.615850e-47 |
| Msa0181140 | Msa1408280 | -0.806398 | 8.389021e-50 | -8.615850e-47 |
| Msa0181140 | Msa1412830 | -0.812068 | 5.106845e-51 | -8.615850e-47 |
| Msa0181140 | Msa1438780 | -0.802114 | 6.540986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181140 | MtrunA17_Chr1g0203511 | 95.946 | 222 | 7 | 1 | 1 | 222 | 35 | 254 | 8.76e-157 | 434 |
| Msa0181140 | MtrunA17_Chr6g0470661 | 67.660 | 235 | 59 | 4 | 3 | 222 | 2 | 234 | 5.82e-106 | 305 |
| Msa0181140 | MtrunA17_Chr6g0460501 | 49.068 | 161 | 70 | 3 | 19 | 171 | 17 | 173 | 1.19e-46 | 152 |
| Msa0181140 | MtrunA17_Chr3g0136801 | 54.639 | 97 | 44 | 0 | 75 | 171 | 2 | 98 | 3.64e-33 | 115 |
| Msa0181140 | MtrunA17_Chr3g0120151 | 38.542 | 96 | 59 | 0 | 76 | 171 | 35 | 130 | 5.03e-17 | 77.0 |
| Msa0181140 | MtrunA17_Chr6g0460431 | 53.333 | 60 | 28 | 0 | 110 | 169 | 27 | 86 | 1.06e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181140 | AT3G48890.1 | 66.667 | 210 | 62 | 4 | 5 | 213 | 4 | 206 | 3.41e-91 | 268 |
| Msa0181140 | AT5G52240.1 | 61.161 | 224 | 77 | 4 | 3 | 222 | 2 | 219 | 6.38e-88 | 259 |
| Msa0181140 | AT5G52240.2 | 72.093 | 172 | 44 | 2 | 3 | 172 | 2 | 171 | 4.01e-86 | 253 |
| Msa0181140 | AT2G24940.1 | 50.515 | 97 | 48 | 0 | 75 | 171 | 2 | 98 | 1.65e-29 | 106 |
| Msa0181140 | AT4G14965.1 | 30.921 | 152 | 82 | 2 | 20 | 171 | 9 | 137 | 7.12e-17 | 77.0 |
| Msa0181140 | AT4G14965.2 | 39.759 | 83 | 50 | 0 | 76 | 158 | 42 | 124 | 1.38e-15 | 72.8 |
Find 104 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGTTTACTACGTCCTTTC+TGG | 0.101868 | 1_4:-69323926 | Msa0181140:CDS |
| ACCCTTGCTTATGGCTATTA+AGG | 0.124798 | 1_4:-69323753 | Msa0181140:CDS |
| CTCTTGGAAGTTGCGGGATT+GGG | 0.149394 | 1_4:+69323871 | None:intergenic |
| GATTTGACCGGTGATATTTC+TGG | 0.252823 | 1_4:-69322191 | Msa0181140:CDS |
| AGGCGATGATGGACTCCTTT+AGG | 0.261253 | 1_4:+69323999 | None:intergenic |
| ACCGGTGATATTTCTGGTCT+TGG | 0.268409 | 1_4:-69322185 | Msa0181140:CDS |
| ATTGCTTTGGGCTTTGTATA+AGG | 0.272405 | 1_4:-69321574 | Msa0181140:three_prime_UTR |
| GGCGATGATGGACTCCTTTA+GGG | 0.276975 | 1_4:+69324000 | None:intergenic |
| TACGTCCTTTCTGGTCTCTT+TGG | 0.279840 | 1_4:-69323917 | Msa0181140:CDS |
| ATTTGAGCTTGACGCGTTAC+AGG | 0.301755 | 1_4:-69322159 | Msa0181140:CDS |
| CCTCTTGGAAGTTGCGGGAT+TGG | 0.303689 | 1_4:+69323870 | None:intergenic |
| GGACTGGGAATACAAGTTTA+TGG | 0.304869 | 1_4:-69322138 | Msa0181140:CDS |
| CTCCTCCTCTTGGAAGTTGC+GGG | 0.307440 | 1_4:+69323865 | None:intergenic |
| GTGGATTCAGCTTCAGTAAC+TGG | 0.323655 | 1_4:+69322083 | None:intergenic |
| AATGAATTGTGCATTGCTTT+GGG | 0.325785 | 1_4:-69321586 | Msa0181140:three_prime_UTR |
| CCCTTGCTTATGGCTATTAA+GGG | 0.325886 | 1_4:-69323752 | Msa0181140:CDS |
| TTGGGCTTTGTATAAGGGTT+AGG | 0.326494 | 1_4:-69321568 | Msa0181140:three_prime_UTR |
| TTGCTTTGGGCTTTGTATAA+GGG | 0.327589 | 1_4:-69321573 | Msa0181140:three_prime_UTR |
| GGACCGTATGCTTTATTTGC+TGG | 0.331470 | 1_4:-69322260 | Msa0181140:CDS |
| TAATGAATTGTGCATTGCTT+TGG | 0.339484 | 1_4:-69321587 | Msa0181140:three_prime_UTR |
| TCATGATAAACCCTTGCTTA+TGG | 0.362127 | 1_4:-69323762 | Msa0181140:CDS |
| ATGACATTCGAGTCATATCT+TGG | 0.380964 | 1_4:-69321705 | Msa0181140:three_prime_UTR |
| TTATCTGCCTCAACATTTGA+AGG | 0.394915 | 1_4:+69321963 | None:intergenic |
| AGCTTGACGCGTTACAGGAC+TGG | 0.403993 | 1_4:-69322154 | Msa0181140:CDS |
| GTGATTTCACCTAGCTGAAC+AGG | 0.406413 | 1_4:+69323818 | None:intergenic |
| GACCACTTTCTTCACCATCT+TGG | 0.410349 | 1_4:-69323960 | Msa0181140:CDS |
| AATGTTTATTACATAAATAA+TGG | 0.410929 | 1_4:-69321738 | Msa0181140:three_prime_UTR |
| AAAGCAATGCACAATTCATT+AGG | 0.412096 | 1_4:+69321589 | None:intergenic |
| TCTTGGAAGTTGCGGGATTG+GGG | 0.417269 | 1_4:+69323872 | None:intergenic |
| TGTAACGCGTCAAGCTCAAA+TGG | 0.428078 | 1_4:+69322161 | None:intergenic |
| AGCATTGCGTTATTCAATCA+AGG | 0.430578 | 1_4:+69321657 | None:intergenic |
| GTGGTGAATTGAAAATTTAG+TGG | 0.436624 | 1_4:-69321527 | Msa0181140:three_prime_UTR |
| CGATGGCCGGCGTTCAGCTG+TGG | 0.449798 | 1_4:-69324027 | Msa0181140:CDS |
| TAGGAGGGAACGGAAGGGCT+TGG | 0.461649 | 1_4:-69321549 | Msa0181140:three_prime_UTR |
| TAGACCGGTGTAGGCGATGA+TGG | 0.470054 | 1_4:+69323988 | None:intergenic |
| ATAAGCCTTGAGCTCTTCTT+CGG | 0.471949 | 1_4:+69323796 | None:intergenic |
| GTTTATGGAGAAGTATGTTA+AGG | 0.473963 | 1_4:-69322123 | Msa0181140:CDS |
| GCAAATCAACAGTGCATAAG+TGG | 0.476063 | 1_4:+69321843 | None:intergenic |
| GGCTTTGTATAAGGGTTAGG+AGG | 0.477994 | 1_4:-69321565 | Msa0181140:three_prime_UTR |
| GAATCCACGGGTGAACCATC+AGG | 0.480454 | 1_4:-69322068 | Msa0181140:CDS |
| ACCAGAAAGGACGTAGTAAA+CGG | 0.488478 | 1_4:+69323925 | None:intergenic |
| CCTCCTCCTCTTGGAAGTTG+CGG | 0.490295 | 1_4:+69323864 | None:intergenic |
| TTTAGTGGATTTCTTCTCCC+CGG | 0.503688 | 1_4:-69321512 | None:intergenic |
| GTATGCTTTATTTGCTGGCA+AGG | 0.504997 | 1_4:-69322255 | Msa0181140:CDS |
| GAGAGAGAGACTGAAGTAGG+AGG | 0.517331 | 1_4:+69324079 | None:intergenic |
| GAGGGAACGGAAGGGCTTGG+TGG | 0.518739 | 1_4:-69321546 | Msa0181140:three_prime_UTR |
| TATCTGCCTCAACATTTGAA+GGG | 0.520292 | 1_4:+69321964 | None:intergenic |
| GGCAAATAGAAGAGCCAAGA+TGG | 0.520312 | 1_4:+69323946 | None:intergenic |
| TGACATTCGAGTCATATCTT+GGG | 0.520384 | 1_4:-69321704 | Msa0181140:three_prime_UTR |
| AAGGGTTAGGAGGGAACGGA+AGG | 0.521051 | 1_4:-69321555 | Msa0181140:three_prime_UTR |
| GCTTGACGCGTTACAGGACT+GGG | 0.526300 | 1_4:-69322153 | Msa0181140:CDS |
| GAAAGTGGTCGGAGATAGAC+CGG | 0.532113 | 1_4:+69323973 | None:intergenic |
| AGGAGGAATTTGTAGACTTG+TGG | 0.536007 | 1_4:+69324096 | None:intergenic |
| TCTATGATGTCTCTCAGAGC+AGG | 0.537470 | 1_4:-69323724 | Msa0181140:intron |
| ATCAACAGTGCATAAGTGGC+AGG | 0.540032 | 1_4:+69321847 | None:intergenic |
| TTTGATCCGCCATCTTCAGT+TGG | 0.541409 | 1_4:+69322014 | None:intergenic |
| TCATATCTTGGGCTGAGTAG+TGG | 0.544652 | 1_4:-69321693 | Msa0181140:three_prime_UTR |
| ACACAACAACGAGCGATGGC+CGG | 0.545483 | 1_4:-69324040 | Msa0181140:exon |
| GATGGCCGGCGTTCAGCTGT+GGG | 0.545916 | 1_4:-69324026 | Msa0181140:CDS |
| GTATAAGGGTTAGGAGGGAA+CGG | 0.548244 | 1_4:-69321559 | Msa0181140:three_prime_UTR |
| GAAGAGCTCAAGGCTTATGA+TGG | 0.549967 | 1_4:-69323791 | Msa0181140:CDS |
| TTTGATGAGAAAGATTTGAC+CGG | 0.550185 | 1_4:-69322203 | Msa0181140:CDS |
| CAACTTCCAAGAGGAGGAGG+AGG | 0.556609 | 1_4:-69323861 | Msa0181140:CDS |
| CAAGGATGCTAGTCGAGCAT+TGG | 0.559127 | 1_4:-69322237 | Msa0181140:CDS |
| ATCTGCCTCAACATTTGAAG+GGG | 0.560772 | 1_4:+69321965 | None:intergenic |
| GCTGTTAATCCAACTGAAGA+TGG | 0.564157 | 1_4:-69322023 | Msa0181140:CDS |
| TCAGCTGTGGGAAACCCTAA+AGG | 0.566475 | 1_4:-69324014 | Msa0181140:CDS |
| GTAACGCGTCAAGCTCAAAT+GGG | 0.568003 | 1_4:+69322162 | None:intergenic |
| AGTAGCCAAAGAGACCAGAA+AGG | 0.568870 | 1_4:+69323912 | None:intergenic |
| CCGCAACTTCCAAGAGGAGG+AGG | 0.571017 | 1_4:-69323864 | Msa0181140:CDS |
| CTTGGAAGTTGCGGGATTGG+GGG | 0.575348 | 1_4:+69323873 | None:intergenic |
| TTGCCAGCAAATAAAGCATA+CGG | 0.582093 | 1_4:+69322257 | None:intergenic |
| ATGGAGAAGTATGTTAAGGT+CGG | 0.585025 | 1_4:-69322119 | Msa0181140:CDS |
| GGTCGGAGATAGACCGGTGT+AGG | 0.586223 | 1_4:+69323979 | None:intergenic |
| ACCCTTAATAGCCATAAGCA+AGG | 0.587630 | 1_4:+69323751 | None:intergenic |
| AATAAAGCATACGGTCCACC+CGG | 0.588408 | 1_4:+69322266 | None:intergenic |
| GTTACTGAAGCTGAATCCAC+GGG | 0.589713 | 1_4:-69322080 | Msa0181140:CDS |
| TGGTTTGTTTGTCTACACAC+TGG | 0.597644 | 1_4:+69324116 | None:intergenic |
| CCCTTAATAGCCATAAGCAA+GGG | 0.597837 | 1_4:+69323752 | None:intergenic |
| GGTTTCCCACAGCTGAACGC+CGG | 0.599948 | 1_4:+69324021 | None:intergenic |
| AGTTACTGAAGCTGAATCCA+CGG | 0.600398 | 1_4:-69322081 | Msa0181140:CDS |
| GAGTCCATCATCGCCTACAC+CGG | 0.603823 | 1_4:-69323992 | Msa0181140:CDS |
| TGAACAGGTGGTCGGAGAGG+TGG | 0.609555 | 1_4:+69323833 | None:intergenic |
| GCTTTGTATAAGGGTTAGGA+GGG | 0.610048 | 1_4:-69321564 | Msa0181140:three_prime_UTR |
| CACCTAGCTGAACAGGTGGT+CGG | 0.610497 | 1_4:+69323825 | None:intergenic |
| CTCCGACCACCTGTTCAGCT+AGG | 0.610888 | 1_4:-69323827 | Msa0181140:CDS |
| AGCTGAACAGGTGGTCGGAG+AGG | 0.612379 | 1_4:+69323830 | None:intergenic |
| ACCTGCAGCTGTTAAAAGTG+AGG | 0.614328 | 1_4:-69321991 | Msa0181140:CDS |
| ATCCCGCAACTTCCAAGAGG+AGG | 0.616485 | 1_4:-69323867 | Msa0181140:CDS |
| AGCCAAGATGGTGAAGAAAG+TGG | 0.619359 | 1_4:+69323958 | None:intergenic |
| GGAAACCCCTTCAAATGTTG+AGG | 0.619610 | 1_4:-69321970 | Msa0181140:CDS |
| AGGGTTAGGAGGGAACGGAA+GGG | 0.627173 | 1_4:-69321554 | Msa0181140:three_prime_UTR |
| AATCACCGAAGAAGAGCTCA+AGG | 0.634309 | 1_4:-69323801 | Msa0181140:CDS |
| TAACACACAACAACGAGCGA+TGG | 0.637257 | 1_4:-69324044 | Msa0181140:exon |
| AGATCCTGATGGTTCACCCG+TGG | 0.644194 | 1_4:+69322064 | None:intergenic |
| AAGATGGTGAAGAAAGTGGT+CGG | 0.644524 | 1_4:+69323962 | None:intergenic |
| GCCAAGACCAGAAATATCAC+CGG | 0.647612 | 1_4:+69322184 | None:intergenic |
| TCACGAGGAGTAGATCCTGA+TGG | 0.661127 | 1_4:+69322053 | None:intergenic |
| TGAGTAATGAAATGTAGTGG+TGG | 0.671023 | 1_4:-69321797 | Msa0181140:three_prime_UTR |
| GTTAATCCAACTGAAGATGG+CGG | 0.680061 | 1_4:-69322020 | Msa0181140:CDS |
| ATTTCACCTAGCTGAACAGG+TGG | 0.686884 | 1_4:+69323821 | None:intergenic |
| CCAATCCCGCAACTTCCAAG+AGG | 0.696455 | 1_4:-69323870 | Msa0181140:CDS |
| TGATGAGTAATGAAATGTAG+TGG | 0.702566 | 1_4:-69321800 | Msa0181140:three_prime_UTR |
| TTAACAGCATCAACATCACG+AGG | 0.728477 | 1_4:+69322038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTTATTACATAAATAA+TGG | - | chr1_4:69323888-69323907 | Msa0181140:CDS | 10.0% |
| !!! | TTATATTCTTATCTAAAGTT+TGG | - | chr1_4:69322002-69322021 | Msa0181140:CDS | 15.0% |
| !!! | TATATTCTTATCTAAAGTTT+GGG | - | chr1_4:69322003-69322022 | Msa0181140:CDS | 15.0% |
| !!! | ACATTTTCTCAAATTATTAT+TGG | - | chr1_4:69322310-69322329 | Msa0181140:intron | 15.0% |
| !! | AATATACACATAATACTTAA+TGG | + | chr1_4:69322496-69322515 | None:intergenic | 15.0% |
| !! | AAAGTAAAGTGATTTATGTT+TGG | - | chr1_4:69322072-69322091 | Msa0181140:CDS | 20.0% |
| !! | TACACTAAGTTTATGATATA+AGG | - | chr1_4:69322446-69322465 | Msa0181140:intron | 20.0% |
| !!! | AGAATTGATTTTAACATGTT+TGG | - | chr1_4:69322984-69323003 | Msa0181140:intron | 20.0% |
| !! | TCTAACTTGAAGTTAAAATT+TGG | - | chr1_4:69323037-69323056 | Msa0181140:intron | 20.0% |
| ! | AAACAGAAGCTAAGAAAAAA+GGG | + | chr1_4:69321938-69321957 | None:intergenic | 25.0% |
| ! | AAAACAGAAGCTAAGAAAAA+AGG | + | chr1_4:69321939-69321958 | None:intergenic | 25.0% |
| ! | TAATTATGACTTCTGCAAAA+GGG | + | chr1_4:69321978-69321997 | None:intergenic | 25.0% |
| ! | TTAATTATGACTTCTGCAAA+AGG | + | chr1_4:69321979-69321998 | None:intergenic | 25.0% |
| ! | CAAAATTAATTATGCTCGAA+AGG | - | chr1_4:69322184-69322203 | Msa0181140:CDS | 25.0% |
| ! | TCTCAAATTATTATTGGTGT+CGG | - | chr1_4:69322316-69322335 | Msa0181140:intron | 25.0% |
| ! | TCATAAACTTAGTGTATGTT+TGG | + | chr1_4:69322442-69322461 | None:intergenic | 25.0% |
| !!! | TTTTGAAAATTATGTGTCCA+TGG | - | chr1_4:69322470-69322489 | Msa0181140:intron | 25.0% |
| ! | TATGTGTATATTTGCATGTT+TGG | - | chr1_4:69322504-69322523 | Msa0181140:intron | 25.0% |
| ! | AATAATCTGTTTATCCAAAC+AGG | - | chr1_4:69322762-69322781 | Msa0181140:intron | 25.0% |
| ! | TAAGACTTTGTATCTACTTA+GGG | + | chr1_4:69322788-69322807 | None:intergenic | 25.0% |
| ! | ATAAGACTTTGTATCTACTT+AGG | + | chr1_4:69322789-69322808 | None:intergenic | 25.0% |
| ! | AAAACAAATGAAACACCAAA+GGG | + | chr1_4:69322847-69322866 | None:intergenic | 25.0% |
| ! | AAAAACAAATGAAACACCAA+AGG | + | chr1_4:69322848-69322867 | None:intergenic | 25.0% |
| !!! | TATGCTTTTAAGTGTATGTT+TGG | - | chr1_4:69322921-69322940 | Msa0181140:intron | 25.0% |
| ! | CTAGTCAAAATAGATTATTG+AGG | - | chr1_4:69322958-69322977 | Msa0181140:intron | 25.0% |
| !!! | AAGTTAAAATTTGGAGCTTT+TGG | - | chr1_4:69323046-69323065 | Msa0181140:intron | 25.0% |
| ! | GAATACTTTCATACAAAAGT+GGG | + | chr1_4:69323111-69323130 | None:intergenic | 25.0% |
| ! | TGAATACTTTCATACAAAAG+TGG | + | chr1_4:69323112-69323131 | None:intergenic | 25.0% |
| !! | GATTTGTAAAAGATTGATTC+TGG | + | chr1_4:69323153-69323172 | None:intergenic | 25.0% |
| ! | GATCATAATAAATAGAGAGA+GGG | + | chr1_4:69323308-69323327 | None:intergenic | 25.0% |
| ! | AGATCATAATAAATAGAGAG+AGG | + | chr1_4:69323309-69323328 | None:intergenic | 25.0% |
| !! | AATTGATTCTACCTAGCTTT+TGG | + | chr1_4:69322157-69322176 | None:intergenic | 30.0% |
| ATGAAACACGAATACATACA+CGG | + | chr1_4:69322345-69322364 | None:intergenic | 30.0% | |
| CTACTAACATATATTGAGAC+TGG | - | chr1_4:69322547-69322566 | Msa0181140:intron | 30.0% | |
| TTTGATGAGAAAGATTTGAC+CGG | - | chr1_4:69323423-69323442 | Msa0181140:intron | 30.0% | |
| ! | GTTTATGGAGAAGTATGTTA+AGG | - | chr1_4:69323503-69323522 | Msa0181140:intron | 30.0% |
| AAAAACTGAGCAAAAATGTC+AGG | - | chr1_4:69323733-69323752 | Msa0181140:CDS | 30.0% | |
| !! | CAAGTTTTCATAGTTAGTCT+AGG | - | chr1_4:69323756-69323775 | Msa0181140:CDS | 30.0% |
| TGATGAGTAATGAAATGTAG+TGG | - | chr1_4:69323826-69323845 | Msa0181140:CDS | 30.0% | |
| AAAGCAATGCACAATTCATT+AGG | + | chr1_4:69324040-69324059 | None:intergenic | 30.0% | |
| TAATGAATTGTGCATTGCTT+TGG | - | chr1_4:69324039-69324058 | Msa0181140:exon | 30.0% | |
| AATGAATTGTGCATTGCTTT+GGG | - | chr1_4:69324040-69324059 | Msa0181140:exon | 30.0% | |
| GTGGTGAATTGAAAATTTAG+TGG | - | chr1_4:69324099-69324118 | Msa0181140:five_prime_UTR | 30.0% | |
| TCATGATAAACCCTTGCTTA+TGG | - | chr1_4:69321864-69321883 | Msa0181140:three_prime_UTR | 35.0% | |
| !! | CAATTCTAGAACCAAAAGCT+AGG | - | chr1_4:69322143-69322162 | Msa0181140:CDS | 35.0% |
| CTAGGTAGAATCAATTCTTG+AGG | - | chr1_4:69322161-69322180 | Msa0181140:CDS | 35.0% | |
| TAGAAAGCAACCAAACATGT+CGG | - | chr1_4:69322368-69322387 | Msa0181140:intron | 35.0% | |
| ! | AGAATTGATTCCGACATGTT+TGG | + | chr1_4:69322381-69322400 | None:intergenic | 35.0% |
| ! | CTTCACCTCCAAATCAATTT+TGG | - | chr1_4:69322399-69322418 | Msa0181140:intron | 35.0% |
| CACATAATACTTAATGGCCA+TGG | + | chr1_4:69322490-69322509 | None:intergenic | 35.0% | |
| CTTATTATGAGAAGAGCTTG+TGG | - | chr1_4:69322728-69322747 | Msa0181140:intron | 35.0% | |
| AAGATGCGCTTATGCTTAAT+GGG | + | chr1_4:69322820-69322839 | None:intergenic | 35.0% | |
| AAAGATGCGCTTATGCTTAA+TGG | + | chr1_4:69322821-69322840 | None:intergenic | 35.0% | |
| TTGTTGTAATGTTGTCTGCT+TGG | - | chr1_4:69322866-69322885 | Msa0181140:intron | 35.0% | |
| ATAGTCTAGCTGATCTAAAG+TGG | + | chr1_4:69322902-69322921 | None:intergenic | 35.0% | |
| ! | TGGGTTGAACAACAAATTCA+AGG | + | chr1_4:69323092-69323111 | None:intergenic | 35.0% |
| CACTTCAGTTTCTTGGAAAT+TGG | + | chr1_4:69323249-69323268 | None:intergenic | 35.0% | |
| CAATTTCCAAGAAACTGAAG+TGG | - | chr1_4:69323247-69323266 | Msa0181140:intron | 35.0% | |
| TTGCCAGCAAATAAAGCATA+CGG | + | chr1_4:69323372-69323391 | None:intergenic | 35.0% | |
| ! | ATGGAGAAGTATGTTAAGGT+CGG | - | chr1_4:69323507-69323526 | Msa0181140:intron | 35.0% |
| TATCTGCCTCAACATTTGAA+GGG | + | chr1_4:69323665-69323684 | None:intergenic | 35.0% | |
| TTATCTGCCTCAACATTTGA+AGG | + | chr1_4:69323666-69323685 | None:intergenic | 35.0% | |
| !!! | AGTTTTTTCAGCAACTACTG+TGG | + | chr1_4:69323720-69323739 | None:intergenic | 35.0% |
| TGAGTAATGAAATGTAGTGG+TGG | - | chr1_4:69323829-69323848 | Msa0181140:CDS | 35.0% | |
| ATGACATTCGAGTCATATCT+TGG | - | chr1_4:69323921-69323940 | Msa0181140:CDS | 35.0% | |
| TGACATTCGAGTCATATCTT+GGG | - | chr1_4:69323922-69323941 | Msa0181140:CDS | 35.0% | |
| AGCATTGCGTTATTCAATCA+AGG | + | chr1_4:69323972-69323991 | None:intergenic | 35.0% | |
| ! | ATTGCTTTGGGCTTTGTATA+AGG | - | chr1_4:69324052-69324071 | Msa0181140:five_prime_UTR | 35.0% |
| ! | TTGCTTTGGGCTTTGTATAA+GGG | - | chr1_4:69324053-69324072 | Msa0181140:five_prime_UTR | 35.0% |
| AGGAGGAATTTGTAGACTTG+TGG | + | chr1_4:69321533-69321552 | None:intergenic | 40.0% | |
| AAGATGGTGAAGAAAGTGGT+CGG | + | chr1_4:69321667-69321686 | None:intergenic | 40.0% | |
| ACCAGAAAGGACGTAGTAAA+CGG | + | chr1_4:69321704-69321723 | None:intergenic | 40.0% | |
| ATAAGCCTTGAGCTCTTCTT+CGG | + | chr1_4:69321833-69321852 | None:intergenic | 40.0% | |
| ACCCTTGCTTATGGCTATTA+AGG | - | chr1_4:69321873-69321892 | Msa0181140:three_prime_UTR | 40.0% | |
| CCCTTAATAGCCATAAGCAA+GGG | + | chr1_4:69321877-69321896 | None:intergenic | 40.0% | |
| CCCTTGCTTATGGCTATTAA+GGG | - | chr1_4:69321874-69321893 | Msa0181140:three_prime_UTR | 40.0% | |
| ACCCTTAATAGCCATAAGCA+AGG | + | chr1_4:69321878-69321897 | None:intergenic | 40.0% | |
| AGATGCGCTTATGCTTAATG+GGG | + | chr1_4:69322819-69322838 | None:intergenic | 40.0% | |
| ! | TGTATGTGTGTGTGTTTCTG+TGG | + | chr1_4:69323187-69323206 | None:intergenic | 40.0% |
| GATGTACCACTTCAGTTTCT+TGG | + | chr1_4:69323256-69323275 | None:intergenic | 40.0% | |
| ! | ATCTGTAATTGTGTCGTTCC+AGG | - | chr1_4:69323325-69323344 | Msa0181140:intron | 40.0% |
| ! | TGTCGTTCCAGGATGTTTTA+TGG | - | chr1_4:69323336-69323355 | Msa0181140:intron | 40.0% |
| ! | TTCCAGGATGTTTTATGGAC+CGG | - | chr1_4:69323341-69323360 | Msa0181140:intron | 40.0% |
| !! | GTATGCTTTATTTGCTGGCA+AGG | - | chr1_4:69323371-69323390 | Msa0181140:intron | 40.0% |
| GATTTGACCGGTGATATTTC+TGG | - | chr1_4:69323435-69323454 | Msa0181140:intron | 40.0% | |
| GGACTGGGAATACAAGTTTA+TGG | - | chr1_4:69323488-69323507 | Msa0181140:intron | 40.0% | |
| AGTTACTGAAGCTGAATCCA+CGG | - | chr1_4:69323545-69323564 | Msa0181140:intron | 40.0% | |
| TTAACAGCATCAACATCACG+AGG | + | chr1_4:69323591-69323610 | None:intergenic | 40.0% | |
| GCTGTTAATCCAACTGAAGA+TGG | - | chr1_4:69323603-69323622 | Msa0181140:intron | 40.0% | |
| GTTAATCCAACTGAAGATGG+CGG | - | chr1_4:69323606-69323625 | Msa0181140:intron | 40.0% | |
| ATCTGCCTCAACATTTGAAG+GGG | + | chr1_4:69323664-69323683 | None:intergenic | 40.0% | |
| GCAAATCAACAGTGCATAAG+TGG | + | chr1_4:69323786-69323805 | None:intergenic | 40.0% | |
| ! | TTGGGCTTTGTATAAGGGTT+AGG | - | chr1_4:69324058-69324077 | Msa0181140:five_prime_UTR | 40.0% |
| GCTTTGTATAAGGGTTAGGA+GGG | - | chr1_4:69324062-69324081 | Msa0181140:five_prime_UTR | 40.0% | |
| AGAGAGAGAGAGACTGAAGT+AGG | + | chr1_4:69321553-69321572 | None:intergenic | 45.0% | |
| TAACACACAACAACGAGCGA+TGG | - | chr1_4:69321582-69321601 | Msa0181140:three_prime_UTR | 45.0% | |
| GACCACTTTCTTCACCATCT+TGG | - | chr1_4:69321666-69321685 | Msa0181140:three_prime_UTR | 45.0% | |
| AGCCAAGATGGTGAAGAAAG+TGG | + | chr1_4:69321671-69321690 | None:intergenic | 45.0% | |
| GGCAAATAGAAGAGCCAAGA+TGG | + | chr1_4:69321683-69321702 | None:intergenic | 45.0% | |
| ! | TACGTCCTTTCTGGTCTCTT+TGG | - | chr1_4:69321709-69321728 | Msa0181140:three_prime_UTR | 45.0% |
| AGTAGCCAAAGAGACCAGAA+AGG | + | chr1_4:69321717-69321736 | None:intergenic | 45.0% | |
| ATTTCACCTAGCTGAACAGG+TGG | + | chr1_4:69321808-69321827 | None:intergenic | 45.0% | |
| GTGATTTCACCTAGCTGAAC+AGG | + | chr1_4:69321811-69321830 | None:intergenic | 45.0% | |
| AATCACCGAAGAAGAGCTCA+AGG | - | chr1_4:69321825-69321844 | Msa0181140:three_prime_UTR | 45.0% | |
| GAAGAGCTCAAGGCTTATGA+TGG | - | chr1_4:69321835-69321854 | Msa0181140:three_prime_UTR | 45.0% | |
| TCTATGATGTCTCTCAGAGC+AGG | - | chr1_4:69321902-69321921 | Msa0181140:three_prime_UTR | 45.0% | |
| ACAGCAGGACACATAATCTG+AGG | + | chr1_4:69322228-69322247 | None:intergenic | 45.0% | |
| CAGATTATGTGTCCTGCTGT+TGG | - | chr1_4:69322228-69322247 | Msa0181140:CDS | 45.0% | |
| !! | AGGGGCCAAAATTGATTTGG+AGG | + | chr1_4:69322407-69322426 | None:intergenic | 45.0% |
| TGCAGGGGCCAAAATTGATT+TGG | + | chr1_4:69322410-69322429 | None:intergenic | 45.0% | |
| ! | TGTTTGGTTCCACTTCTGCA+GGG | + | chr1_4:69322426-69322445 | None:intergenic | 45.0% |
| ! | ATGTTTGGTTCCACTTCTGC+AGG | + | chr1_4:69322427-69322446 | None:intergenic | 45.0% |
| GTATCTACTTAGGGCCTGTT+TGG | + | chr1_4:69322779-69322798 | None:intergenic | 45.0% | |
| GATGCGCTTATGCTTAATGG+GGG | + | chr1_4:69322818-69322837 | None:intergenic | 45.0% | |
| ! | AAGCGCATCTTTTGTCCCTT+TGG | - | chr1_4:69322829-69322848 | Msa0181140:intron | 45.0% |
| ! | TCCAGGATGTTTTATGGACC+GGG | - | chr1_4:69323342-69323361 | Msa0181140:intron | 45.0% |
| AATAAAGCATACGGTCCACC+CGG | + | chr1_4:69323363-69323382 | None:intergenic | 45.0% | |
| !! | GGACCGTATGCTTTATTTGC+TGG | - | chr1_4:69323366-69323385 | Msa0181140:intron | 45.0% |
| !! | ACCGGTGATATTTCTGGTCT+TGG | - | chr1_4:69323441-69323460 | Msa0181140:intron | 45.0% |
| GCCAAGACCAGAAATATCAC+CGG | + | chr1_4:69323445-69323464 | None:intergenic | 45.0% | |
| GTAACGCGTCAAGCTCAAAT+GGG | + | chr1_4:69323467-69323486 | None:intergenic | 45.0% | |
| TGTAACGCGTCAAGCTCAAA+TGG | + | chr1_4:69323468-69323487 | None:intergenic | 45.0% | |
| ATTTGAGCTTGACGCGTTAC+AGG | - | chr1_4:69323467-69323486 | Msa0181140:intron | 45.0% | |
| GTGGATTCAGCTTCAGTAAC+TGG | + | chr1_4:69323546-69323565 | None:intergenic | 45.0% | |
| GTTACTGAAGCTGAATCCAC+GGG | - | chr1_4:69323546-69323565 | Msa0181140:intron | 45.0% | |
| TTTGATCCGCCATCTTCAGT+TGG | + | chr1_4:69323615-69323634 | None:intergenic | 45.0% | |
| ACCTGCAGCTGTTAAAAGTG+AGG | - | chr1_4:69323635-69323654 | Msa0181140:intron | 45.0% | |
| !! | TCCTCACTTTTAACAGCTGC+AGG | + | chr1_4:69323639-69323658 | None:intergenic | 45.0% |
| GGAAACCCCTTCAAATGTTG+AGG | - | chr1_4:69323656-69323675 | Msa0181140:intron | 45.0% | |
| ATCAACAGTGCATAAGTGGC+AGG | + | chr1_4:69323782-69323801 | None:intergenic | 45.0% | |
| TCATATCTTGGGCTGAGTAG+TGG | - | chr1_4:69323933-69323952 | Msa0181140:CDS | 45.0% | |
| ! | GGCTTTGTATAAGGGTTAGG+AGG | - | chr1_4:69324061-69324080 | Msa0181140:five_prime_UTR | 45.0% |
| GTATAAGGGTTAGGAGGGAA+CGG | - | chr1_4:69324067-69324086 | Msa0181140:five_prime_UTR | 45.0% | |
| GAGAGAGAGACTGAAGTAGG+AGG | + | chr1_4:69321550-69321569 | None:intergenic | 50.0% | |
| TCAGCTGTGGGAAACCCTAA+AGG | - | chr1_4:69321612-69321631 | Msa0181140:three_prime_UTR | 50.0% | |
| !! | GGCGATGATGGACTCCTTTA+GGG | + | chr1_4:69321629-69321648 | None:intergenic | 50.0% |
| !! | AGGCGATGATGGACTCCTTT+AGG | + | chr1_4:69321630-69321649 | None:intergenic | 50.0% |
| GAAAGTGGTCGGAGATAGAC+CGG | + | chr1_4:69321656-69321675 | None:intergenic | 50.0% | |
| GCCGTTTACTACGTCCTTTC+TGG | - | chr1_4:69321700-69321719 | Msa0181140:three_prime_UTR | 50.0% | |
| TCTTGGAAGTTGCGGGATTG+GGG | + | chr1_4:69321757-69321776 | None:intergenic | 50.0% | |
| CTCTTGGAAGTTGCGGGATT+GGG | + | chr1_4:69321758-69321777 | None:intergenic | 50.0% | |
| ! | CGTGTCGATGTCAGACACTA+AGG | + | chr1_4:69322259-69322278 | None:intergenic | 50.0% |
| !! | AATTTTGGCCCCTGCAGAAG+TGG | - | chr1_4:69322414-69322433 | Msa0181140:intron | 50.0% |
| ! | GTTTGGTTCCACTTCTGCAG+GGG | + | chr1_4:69322425-69322444 | None:intergenic | 50.0% |
| ACCCGGTCCATAAAACATCC+TGG | + | chr1_4:69323346-69323365 | None:intergenic | 50.0% | |
| ! | AGGATGTTTTATGGACCGGG+TGG | - | chr1_4:69323345-69323364 | Msa0181140:intron | 50.0% |
| CAAGGATGCTAGTCGAGCAT+TGG | - | chr1_4:69323389-69323408 | Msa0181140:intron | 50.0% | |
| TCACGAGGAGTAGATCCTGA+TGG | + | chr1_4:69323576-69323595 | None:intergenic | 50.0% | |
| ACACAACAACGAGCGATGGC+CGG | - | chr1_4:69321586-69321605 | Msa0181140:three_prime_UTR | 55.0% | |
| GAGTCCATCATCGCCTACAC+CGG | - | chr1_4:69321634-69321653 | Msa0181140:three_prime_UTR | 55.0% | |
| TAGACCGGTGTAGGCGATGA+TGG | + | chr1_4:69321641-69321660 | None:intergenic | 55.0% | |
| CTTGGAAGTTGCGGGATTGG+GGG | + | chr1_4:69321756-69321775 | None:intergenic | 55.0% | |
| CCTCTTGGAAGTTGCGGGAT+TGG | + | chr1_4:69321759-69321778 | None:intergenic | 55.0% | |
| CCAATCCCGCAACTTCCAAG+AGG | - | chr1_4:69321756-69321775 | Msa0181140:three_prime_UTR | 55.0% | |
| ATCCCGCAACTTCCAAGAGG+AGG | - | chr1_4:69321759-69321778 | Msa0181140:three_prime_UTR | 55.0% | |
| CTCCTCCTCTTGGAAGTTGC+GGG | + | chr1_4:69321764-69321783 | None:intergenic | 55.0% | |
| CCTCCTCCTCTTGGAAGTTG+CGG | + | chr1_4:69321765-69321784 | None:intergenic | 55.0% | |
| CAACTTCCAAGAGGAGGAGG+AGG | - | chr1_4:69321765-69321784 | Msa0181140:three_prime_UTR | 55.0% | |
| CACCTAGCTGAACAGGTGGT+CGG | + | chr1_4:69321804-69321823 | None:intergenic | 55.0% | |
| ACTAAGGCGTGTCCAACAGC+AGG | + | chr1_4:69322243-69322262 | None:intergenic | 55.0% | |
| AGCTTGACGCGTTACAGGAC+TGG | - | chr1_4:69323472-69323491 | Msa0181140:intron | 55.0% | |
| GCTTGACGCGTTACAGGACT+GGG | - | chr1_4:69323473-69323492 | Msa0181140:intron | 55.0% | |
| GAATCCACGGGTGAACCATC+AGG | - | chr1_4:69323558-69323577 | Msa0181140:intron | 55.0% | |
| AGATCCTGATGGTTCACCCG+TGG | + | chr1_4:69323565-69323584 | None:intergenic | 55.0% | |
| AAGGGTTAGGAGGGAACGGA+AGG | - | chr1_4:69324071-69324090 | Msa0181140:five_prime_UTR | 55.0% | |
| AGGGTTAGGAGGGAACGGAA+GGG | - | chr1_4:69324072-69324091 | Msa0181140:five_prime_UTR | 55.0% | |
| GGTTTCCCACAGCTGAACGC+CGG | + | chr1_4:69321608-69321627 | None:intergenic | 60.0% | |
| GGTCGGAGATAGACCGGTGT+AGG | + | chr1_4:69321650-69321669 | None:intergenic | 60.0% | |
| AGTTGCGGGATTGGGGGTGA+AGG | + | chr1_4:69321750-69321769 | None:intergenic | 60.0% | |
| CCGCAACTTCCAAGAGGAGG+AGG | - | chr1_4:69321762-69321781 | Msa0181140:three_prime_UTR | 60.0% | |
| GAAGCTCCTCCTCCTCCTCT+TGG | + | chr1_4:69321774-69321793 | None:intergenic | 60.0% | |
| TGAACAGGTGGTCGGAGAGG+TGG | + | chr1_4:69321796-69321815 | None:intergenic | 60.0% | |
| AGCTGAACAGGTGGTCGGAG+AGG | + | chr1_4:69321799-69321818 | None:intergenic | 60.0% | |
| CTCCGACCACCTGTTCAGCT+AGG | - | chr1_4:69321799-69321818 | Msa0181140:three_prime_UTR | 60.0% | |
| TAGGAGGGAACGGAAGGGCT+TGG | - | chr1_4:69324077-69324096 | Msa0181140:five_prime_UTR | 60.0% | |
| GATGGCCGGCGTTCAGCTGT+GGG | - | chr1_4:69321600-69321619 | Msa0181140:three_prime_UTR | 65.0% | |
| GAGGGAACGGAAGGGCTTGG+TGG | - | chr1_4:69324080-69324099 | Msa0181140:five_prime_UTR | 65.0% | |
| CGATGGCCGGCGTTCAGCTG+TGG | - | chr1_4:69321599-69321618 | Msa0181140:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69321513 | 69324135 | 69321513 | ID=Msa0181140;Name=Msa0181140 |
| chr1_4 | mRNA | 69321513 | 69324135 | 69321513 | ID=Msa0181140-mRNA-1;Parent=Msa0181140;Name=Msa0181140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=88|1|1|1|1|1|2|443|222 |
| chr1_4 | exon | 69321513 | 69322301 | 69321513 | ID=Msa0181140-mRNA-1:exon:23011;Parent=Msa0181140-mRNA-1 |
| chr1_4 | exon | 69323725 | 69324135 | 69323725 | ID=Msa0181140-mRNA-1:exon:23010;Parent=Msa0181140-mRNA-1 |
| chr1_4 | five_prime_UTR | 69324048 | 69324135 | 69324048 | ID=Msa0181140-mRNA-1:five_prime_utr;Parent=Msa0181140-mRNA-1 |
| chr1_4 | CDS | 69323725 | 69324047 | 69323725 | ID=Msa0181140-mRNA-1:cds;Parent=Msa0181140-mRNA-1 |
| chr1_4 | CDS | 69321956 | 69322301 | 69321956 | ID=Msa0181140-mRNA-1:cds;Parent=Msa0181140-mRNA-1 |
| chr1_4 | three_prime_UTR | 69321513 | 69321955 | 69321513 | ID=Msa0181140-mRNA-1:three_prime_utr;Parent=Msa0181140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
