AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0744690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744690 MtrunA17_Chr5g0441201 96.341 492 17 1 1 492 1 491 0.0 946
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0744690 AT5G19500.1 77.859 411 83 3 88 491 91 500 0.0 609
Msa0744690 AT2G33260.2 24.898 490 301 13 35 475 60 531 8.85e-31 125
Msa0744690 AT2G33260.1 26.005 423 258 12 102 475 11 427 4.83e-27 113

Find 105 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTTATTGGTGCAATTAA+TGG 0.137815 5_1:+65584590 Msa0744690:CDS
ACCACTTATACTCTCATTAT+TGG 0.145271 5_1:+65586517 Msa0744690:CDS
TAAATTTCATCCAATATTTA+AGG 0.148372 5_1:-65587220 None:intergenic
AAACAGTGTAAAGTTATTTA+AGG 0.149158 5_1:+65587122 Msa0744690:three_prime_UTR
ATCTTACATTGGATTTGTTT+TGG 0.161342 5_1:+65585888 Msa0744690:CDS
CTTCCTCCTGGAACTATTTC+AGG 0.169530 5_1:-65586933 None:intergenic
AAACTTTGTTCCTTAAATAT+TGG 0.215235 5_1:+65587210 Msa0744690:three_prime_UTR
CACTTATTCTGTTCCTAGTT+TGG 0.216924 5_1:+65585640 Msa0744690:CDS
TCTTTAAAGTGGCTTGATTA+AGG 0.258605 5_1:-65581839 None:intergenic
CTAATGGTTCTTGGTTGTTC+AGG 0.261901 5_1:+65586966 Msa0744690:CDS
GCTTTATTGGTGCAATTAAT+GGG 0.276183 5_1:+65584591 Msa0744690:CDS
TACTGTCCCTAAAGTTCTTC+TGG 0.295009 5_1:-65583877 None:intergenic
CATTCTTTGTTGGGCATTCA+TGG 0.297126 5_1:+65583255 Msa0744690:CDS
TCAATGGCCAGAAGAACTTT+AGG 0.325642 5_1:+65583870 Msa0744690:CDS
TTTAAAGCCTTGGACTTTGC+TGG 0.326378 5_1:+65586554 Msa0744690:CDS
ATTTGTAGCCAGCGCTTTAT+TGG 0.335131 5_1:+65584578 Msa0744690:intron
TTGGACTTTGCTGGAACATA+TGG 0.347713 5_1:+65586563 Msa0744690:CDS
CATAGTAGTTGTGTCTTCCT+TGG 0.350883 5_1:-65581624 None:intergenic
ATAACCCTACTAATGGTTCT+TGG 0.355239 5_1:+65586957 Msa0744690:CDS
AACAGTGTAAAGTTATTTAA+GGG 0.356671 5_1:+65587123 Msa0744690:three_prime_UTR
CGCACTCTCATTTGTTTACC+AGG 0.361529 5_1:+65585343 Msa0744690:CDS
TGTATGGAAGAGGCCTGTTT+TGG 0.367187 5_1:-65586478 None:intergenic
AGATCTTCAAATGGAACAAT+TGG 0.371731 5_1:+65585726 Msa0744690:CDS
ACAAACAGAAACAAACAAAA+AGG 0.374448 5_1:-65587072 None:intergenic
AAACTACCTGAAATAGTTCC+AGG 0.375276 5_1:+65586927 Msa0744690:CDS
CAGTTACTTGCATTCTTTGT+TGG 0.386325 5_1:+65583245 Msa0744690:CDS
CAGTAGGAGTTCAAATTTCA+TGG 0.400109 5_1:+65583895 Msa0744690:CDS
ATTAATGGGGTTCTAGTAGT+TGG 0.405738 5_1:+65584605 Msa0744690:CDS
GAAGATCTCAACTGTTGTAA+TGG 0.406888 5_1:-65585711 None:intergenic
AAGGAGACTTGTTAAAAGTA+AGG 0.407800 5_1:+65585470 Msa0744690:CDS
ATCTCCCAACAGGCCAAAAC+AGG 0.411214 5_1:+65586465 Msa0744690:CDS
GTTCTTTGTACAAATCTTGA+AGG 0.411816 5_1:+65585451 Msa0744690:CDS
ATCTGAAGAACGAGCTATAT+AGG 0.422804 5_1:-65584201 None:intergenic
TCAAGATTTGTACAAAGAAC+AGG 0.422918 5_1:-65585448 None:intergenic
GGAACTAAAGTCAGTATGTA+TGG 0.423140 5_1:-65586494 None:intergenic
CCTGCAGTGACACAAGAATC+AGG 0.423818 5_1:+65583208 Msa0744690:CDS
AGTTACTTGCATTCTTTGTT+GGG 0.425510 5_1:+65583246 Msa0744690:CDS
CGGCTCTGGCGGTGTATCAT+TGG 0.428881 5_1:+65583467 Msa0744690:CDS
CATTGGAGCTGCTTGGAAGT+TGG 0.446073 5_1:-65585306 None:intergenic
GAAGGTCAATAGAAACAGAT+TGG 0.449338 5_1:-65587187 None:intergenic
CAATGGCCAGAAGAACTTTA+GGG 0.450193 5_1:+65583871 Msa0744690:CDS
TCAATCTATCCAAGAAGAAA+AGG 0.452158 5_1:+65581755 Msa0744690:CDS
GAAATATTGCAGGTAGGTGC+AGG 0.453044 5_1:+65583172 Msa0744690:intron
GATTGTCACCAACAGTTCCT+AGG 0.453386 5_1:-65585674 None:intergenic
CTGCAATGTCTTGGTCAGAT+AGG 0.453502 5_1:+65586880 Msa0744690:CDS
GAAGACACAACTACTATGTA+AGG 0.458123 5_1:+65581629 Msa0744690:CDS
TTTGGAGGCATATGCTACTT+TGG 0.460980 5_1:+65584368 Msa0744690:CDS
TCAGTGTTAAATCTCCCAAC+AGG 0.465991 5_1:+65586455 Msa0744690:intron
ACAAATGAGAGTGCGATAAT+CGG 0.466385 5_1:-65585335 None:intergenic
GTTTGGAATGGTGTTATCCT+AGG 0.466536 5_1:+65585657 Msa0744690:CDS
AACAACCAAGAACCATTAGT+AGG 0.469226 5_1:-65586962 None:intergenic
AGTAGGGTTATCCTTCCTCC+TGG 0.469240 5_1:-65586945 None:intergenic
AGATTATGTCCAGGTATCAA+TGG 0.471981 5_1:+65583854 Msa0744690:intron
ATTTAAGGAACAAAGTTTGA+AGG 0.474256 5_1:-65587205 None:intergenic
TTAAAAGAGCATCAAAATGC+AGG 0.476813 5_1:-65585280 None:intergenic
GTCAACACCATGTGTGATCT+CGG 0.477231 5_1:+65583447 Msa0744690:CDS
GGATAACACCATTCCAAACT+AGG 0.477436 5_1:-65585653 None:intergenic
GCGATAATCGGTATACTCAT+TGG 0.479827 5_1:-65585323 None:intergenic
TGCAGGAGTGCAATAATACT+AGG 0.483245 5_1:+65585606 Msa0744690:intron
AGTGAGAAGATCTCAACTAT+AGG 0.484893 5_1:-65585850 None:intergenic
GAGGCATATGCTACTTTGGA+AGG 0.486837 5_1:+65584372 Msa0744690:CDS
ACCATGTGTGATCTCGGCTC+TGG 0.490461 5_1:+65583453 Msa0744690:CDS
TCCAATAATGAGAGTATAAG+TGG 0.490618 5_1:-65586518 None:intergenic
AGGAAGGATAACCCTACTAA+TGG 0.492382 5_1:+65586950 Msa0744690:CDS
ATTCTGTTCCTAGTTTGGAA+TGG 0.494543 5_1:+65585645 Msa0744690:CDS
AAATTTGGAATATGAAAGAA+TGG 0.496313 5_1:-65581591 None:intergenic
GAAATCCTGCAGGTTGTGAC+AGG 0.502128 5_1:+65583402 Msa0744690:intron
TTATTCCAGCTGCAATGTCT+TGG 0.502595 5_1:+65586871 Msa0744690:CDS
ACCAGGTTCTCTCTTTAAAG+TGG 0.513763 5_1:-65581850 None:intergenic
CCTGATTCTTGTGTCACTGC+AGG 0.516721 5_1:-65583208 None:intergenic
TGTAATGGATCTAATCCCAT+TGG 0.516758 5_1:-65585696 None:intergenic
GTATACTCATTGGAGCTGCT+TGG 0.518050 5_1:-65585313 None:intergenic
CAACAGTTGAGATCTTCAAA+TGG 0.523385 5_1:+65585717 Msa0744690:CDS
CAAACTAGGAACAGAATAAG+TGG 0.525691 5_1:-65585639 None:intergenic
CTGAAATAGTTCCAGGAGGA+AGG 0.527976 5_1:+65586934 Msa0744690:CDS
AGGCAATCAGAAGGGCGTAA+TGG 0.529231 5_1:-65584181 None:intergenic
GCAATTGCTACATCTTACAT+TGG 0.543378 5_1:+65585877 Msa0744690:CDS
GCCACTTTAAAGAGAGAACC+TGG 0.543559 5_1:+65581849 Msa0744690:CDS
AAAGTCAGTATGTATGGAAG+AGG 0.544155 5_1:-65586488 None:intergenic
TCTGACCAAGACATTGCAGC+TGG 0.549499 5_1:-65586876 None:intergenic
AGAAGAACTTTAGGGACAGT+AGG 0.553655 5_1:+65583879 Msa0744690:CDS
ACTGTTGGTGACAATCCAAT+GGG 0.561349 5_1:+65585681 Msa0744690:CDS
AACTGTTGGTGACAATCCAA+TGG 0.566366 5_1:+65585680 Msa0744690:CDS
GACTTTGCTGGAACATATGG+AGG 0.569015 5_1:+65586566 Msa0744690:CDS
TTTCCTGGTTGCAGGCACTA+CGG 0.571197 5_1:+65582023 Msa0744690:CDS
ACAGTGTAAAGTTATTTAAG+GGG 0.575409 5_1:+65587124 Msa0744690:three_prime_UTR
TATAATACATACAGTCTGCA+AGG 0.577013 5_1:-65585924 None:intergenic
AGAAGGAAGATACAAAGAAG+AGG 0.582114 5_1:-65581682 None:intergenic
AAACCGTAGTGCCTGCAACC+AGG 0.585575 5_1:-65582026 None:intergenic
CAGTGTAAAGTTATTTAAGG+GGG 0.592473 5_1:+65587125 Msa0744690:three_prime_UTR
GGTGTTATCCTAGGAACTGT+TGG 0.594469 5_1:+65585666 Msa0744690:CDS
CTTTATTGGTGCAATTAATG+GGG 0.594696 5_1:+65584592 Msa0744690:CDS
AAATATTGCAGGTAGGTGCA+GGG 0.597429 5_1:+65583173 Msa0744690:intron
GAGCTATATAGGCAATCAGA+AGG 0.598567 5_1:-65584190 None:intergenic
CTATATTAGACAGTTGCAAG+TGG 0.602825 5_1:+65585254 Msa0744690:intron
AGTGCAATAATACTAGGCAC+TGG 0.606834 5_1:+65585612 Msa0744690:CDS
ACAACCAAGAACCATTAGTA+GGG 0.608420 5_1:-65586961 None:intergenic
ATGTGTGATCTCGGCTCTGG+CGG 0.610785 5_1:+65583456 Msa0744690:CDS
TAATTGCACCAATAAAGCGC+TGG 0.615464 5_1:-65584586 None:intergenic
ATATGTTCCAGCAAAGTCCA+AGG 0.621878 5_1:-65586561 None:intergenic
GCCAGAGCCGAGATCACACA+TGG 0.623234 5_1:-65583454 None:intergenic
GTTGTGAGAAACATTTGTGA+AGG 0.625827 5_1:-65581722 None:intergenic
AGCTATATAGGCAATCAGAA+GGG 0.643728 5_1:-65584189 None:intergenic
AATAATGAGAGTATAAGTGG+TGG 0.643933 5_1:-65586515 None:intergenic
CTACCTGAAATAGTTCCAGG+AGG 0.717690 5_1:+65586930 Msa0744690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAATGTAAATAAAG+TGG - chr5_1:65582178-65582197 None:intergenic 10.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr5_1:65582265-65582284 Msa0744690:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr5_1:65582266-65582285 Msa0744690:intron 15.0%
!! AAAGTTGAATATATTGTATT+GGG + chr5_1:65582290-65582309 Msa0744690:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_1:65582330-65582349 Msa0744690:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr5_1:65582331-65582350 Msa0744690:intron 15.0%
!!! TCTTAAAAAAATGATTAGTT+TGG + chr5_1:65582513-65582532 Msa0744690:intron 15.0%
!!! TAGATATTTAGAGATATTTT+AGG - chr5_1:65583638-65583657 None:intergenic 15.0%
!! TTACTAATACTAATCTAAAT+AGG - chr5_1:65583826-65583845 None:intergenic 15.0%
!! GAAAATTAAGACATAATTTA+AGG - chr5_1:65584275-65584294 None:intergenic 15.0%
!! TATAGTTTATGAATTCTATT+AGG - chr5_1:65584921-65584940 None:intergenic 15.0%
!! TGTAAAAAAATAACTTATTG+CGG + chr5_1:65586226-65586245 Msa0744690:intron 15.0%
!! AATTAAAATTAACATGGAAA+TGG - chr5_1:65586616-65586635 None:intergenic 15.0%
!! AATTGCAATTAAAATTAACA+TGG - chr5_1:65586622-65586641 None:intergenic 15.0%
!! TAAATTTCATCCAATATTTA+AGG - chr5_1:65587223-65587242 None:intergenic 15.0%
!!! AAATTTGGAATATGAAAGAA+TGG - chr5_1:65581594-65581613 None:intergenic 20.0%
!!! TTTTTTCTATTCATAGAAGA+AGG - chr5_1:65581702-65581721 None:intergenic 20.0%
!! GATAAATATAAGAGAAAAAG+AGG - chr5_1:65581897-65581916 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr5_1:65582267-65582286 Msa0744690:intron 20.0%
!! GAAAGTTGAATATATTGTAT+TGG + chr5_1:65582289-65582308 Msa0744690:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr5_1:65582363-65582382 Msa0744690:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr5_1:65582364-65582383 Msa0744690:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_1:65582400-65582419 Msa0744690:intron 20.0%
!! ACTTATAAGTTGTAAAGAAA+TGG + chr5_1:65582726-65582745 Msa0744690:intron 20.0%
!! GAATTACATTCAAATGAAAA+GGG - chr5_1:65583025-65583044 None:intergenic 20.0%
!! TGAATTACATTCAAATGAAA+AGG - chr5_1:65583026-65583045 None:intergenic 20.0%
!! TTTCATTTGAATGTAATTCA+AGG + chr5_1:65583026-65583045 Msa0744690:intron 20.0%
!!! TTATATTAATTTTTCAGCAG+AGG - chr5_1:65583365-65583384 None:intergenic 20.0%
!!! ATTATTTCTTAATTCCCTAA+AGG + chr5_1:65583492-65583511 Msa0744690:intron 20.0%
!!! AGATATTTTAGGAACTAATA+TGG - chr5_1:65583627-65583646 None:intergenic 20.0%
!!! TTTTCAATTATGCAATAGTT+AGG + chr5_1:65584050-65584069 Msa0744690:intron 20.0%
!! TTTCAATTATGCAATAGTTA+GGG + chr5_1:65584051-65584070 Msa0744690:intron 20.0%
!!! TAATTTTCATATACTTTGTC+AGG + chr5_1:65584287-65584306 Msa0744690:intron 20.0%
!!! ACTTTGTTTTCATTGATTTT+TGG + chr5_1:65584350-65584369 Msa0744690:CDS 20.0%
!!! CTATTTTCCTAAATTATTAC+CGG - chr5_1:65584479-65584498 None:intergenic 20.0%
!!! AAGTTTTTCATGTCAAAATT+AGG + chr5_1:65584658-65584677 Msa0744690:intron 20.0%
!! GATAACATTGTTCTTATAAA+TGG + chr5_1:65584856-65584875 Msa0744690:intron 20.0%
!!! TCAAATTGATTTAGATTAGA+CGG + chr5_1:65585077-65585096 Msa0744690:intron 20.0%
!! ATATAAAATAAAATAACCGC+TGG - chr5_1:65585149-65585168 None:intergenic 20.0%
!!! TATGATAACGAAATATTACA+TGG + chr5_1:65585166-65585185 Msa0744690:intron 20.0%
!! TGCAAAAGAAAAAAACATTA+GGG - chr5_1:65585590-65585609 None:intergenic 20.0%
!!! AGGCTTTAAAAAATATTTCA+GGG - chr5_1:65586544-65586563 None:intergenic 20.0%
!!! AAGGCTTTAAAAAATATTTC+AGG - chr5_1:65586545-65586564 None:intergenic 20.0%
!!! TGAAATATTTTTTAAAGCCT+TGG + chr5_1:65586544-65586563 Msa0744690:CDS 20.0%
!!! AATGATGAATACTTTTTCAA+AGG - chr5_1:65587031-65587050 None:intergenic 20.0%
!!! AAAGTATTCATCATTTTACA+TGG + chr5_1:65587036-65587055 Msa0744690:three_prime_UTR 20.0%
!! AAACAGTGTAAAGTTATTTA+AGG + chr5_1:65587122-65587141 Msa0744690:three_prime_UTR 20.0%
!! AACAGTGTAAAGTTATTTAA+GGG + chr5_1:65587123-65587142 Msa0744690:three_prime_UTR 20.0%
!! AAACTTTGTTCCTTAAATAT+TGG + chr5_1:65587210-65587229 Msa0744690:three_prime_UTR 20.0%
! GAGCTACAAAAACATATAAA+TGG + chr5_1:65581539-65581558 Msa0744690:exon 25.0%
!! CTTGGTTTGATCAAAAAATT+TGG - chr5_1:65581609-65581628 None:intergenic 25.0%
!!! CAAATTTTTTGATCAAACCA+AGG + chr5_1:65581607-65581626 Msa0744690:CDS 25.0%
!!! ACTTGTGTTTTAACATTAAC+AGG + chr5_1:65581982-65582001 Msa0744690:intron 25.0%
! CATATGAAATTGCAATACAT+AGG - chr5_1:65582131-65582150 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_1:65582399-65582418 Msa0744690:intron 25.0%
! TATAAGTTGTAAAGAAATGG+AGG + chr5_1:65582729-65582748 Msa0744690:intron 25.0%
! ATAAGTTGTAAAGAAATGGA+GGG + chr5_1:65582730-65582749 Msa0744690:intron 25.0%
!!! ATTTTAGTATCGTTCCTTTA+GGG - chr5_1:65583509-65583528 None:intergenic 25.0%
! ACTAATCTAAATAGGTAGAA+TGG - chr5_1:65583818-65583837 None:intergenic 25.0%
! ATTTAATGCAAGCAAACTAT+TGG + chr5_1:65583942-65583961 Msa0744690:intron 25.0%
!!! TTGTTTTCATTGATTTTTGG+AGG + chr5_1:65584353-65584372 Msa0744690:CDS 25.0%
! GAAATCACAGATATATATAC+AGG + chr5_1:65584805-65584824 Msa0744690:intron 25.0%
!! ATACGTCTAATTTTTGTTGA+GGG - chr5_1:65584833-65584852 None:intergenic 25.0%
!! AATACGTCTAATTTTTGTTG+AGG - chr5_1:65584834-65584853 None:intergenic 25.0%
! CAACAAAAATTAGACGTATT+CGG + chr5_1:65584834-65584853 Msa0744690:intron 25.0%
! GCAAAATCACAAATAACAAA+TGG + chr5_1:65584952-65584971 Msa0744690:intron 25.0%
! TTACACACTATAAACAATCT+CGG + chr5_1:65585009-65585028 Msa0744690:intron 25.0%
! CGAAATATTACATGGTTTAT+AGG + chr5_1:65585174-65585193 Msa0744690:intron 25.0%
! TGTTCAAAAATTGGAGATTA+AGG - chr5_1:65585375-65585394 None:intergenic 25.0%
!! AATCTCCAATTTTTGAACAA+TGG + chr5_1:65585376-65585395 Msa0744690:intron 25.0%
! TTTGTCCATTGTTCAAAAAT+TGG - chr5_1:65585384-65585403 None:intergenic 25.0%
! TTTAAGCAAAGAACAAAGAT+TGG - chr5_1:65585504-65585523 None:intergenic 25.0%
!!! TTTTTTTCCTCTTTAAGACT+TGG + chr5_1:65585533-65585552 Msa0744690:intron 25.0%
! AAATATTCCAAGTCTTAAAG+AGG - chr5_1:65585543-65585562 None:intergenic 25.0%
! CTGCAAAAGAAAAAAACATT+AGG - chr5_1:65585591-65585610 None:intergenic 25.0%
!!! CTAATGTTTTTTTCTTTTGC+AGG + chr5_1:65585589-65585608 Msa0744690:intron 25.0%
!!! ATCTTACATTGGATTTGTTT+TGG + chr5_1:65585888-65585907 Msa0744690:CDS 25.0%
!!! TCTTACATTGGATTTGTTTT+GGG + chr5_1:65585889-65585908 Msa0744690:CDS 25.0%
! CAATAGATAAGAAAGAAGTT+GGG - chr5_1:65585953-65585972 None:intergenic 25.0%
! TCAATAGATAAGAAAGAAGT+TGG - chr5_1:65585954-65585973 None:intergenic 25.0%
!! TCTATTGATTAAAGCTAATG+CGG + chr5_1:65585966-65585985 Msa0744690:intron 25.0%
! TCATTAGATAAAATGCAAGT+GGG - chr5_1:65586069-65586088 None:intergenic 25.0%
! TTCATTAGATAAAATGCAAG+TGG - chr5_1:65586070-65586089 None:intergenic 25.0%
! TACAAATTGTTGTCAAATAG+AGG - chr5_1:65586210-65586229 None:intergenic 25.0%
!! TTTAAAATGTGCAACATACT+TGG - chr5_1:65586379-65586398 None:intergenic 25.0%
!!! TGTTGCACATTTTAAAGATT+AGG + chr5_1:65586383-65586402 Msa0744690:intron 25.0%
! TCTGTGAGATAAATAAAGTT+AGG + chr5_1:65586698-65586717 Msa0744690:intron 25.0%
! ACAAACAGAAACAAACAAAA+AGG - chr5_1:65587075-65587094 None:intergenic 25.0%
! ACAGTGTAAAGTTATTTAAG+GGG + chr5_1:65587124-65587143 Msa0744690:three_prime_UTR 25.0%
! ATTTAAGGAACAAAGTTTGA+AGG - chr5_1:65587208-65587227 None:intergenic 25.0%
TCAATCTATCCAAGAAGAAA+AGG + chr5_1:65581755-65581774 Msa0744690:CDS 30.0%
!! TCTTTAAAGTGGCTTGATTA+AGG - chr5_1:65581842-65581861 None:intergenic 30.0%
AGAAAAAGAAAGAGCAAAAG+TGG - chr5_1:65582053-65582072 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr5_1:65582377-65582396 Msa0744690:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr5_1:65582378-65582397 Msa0744690:intron 30.0%
AAATGACACTTATTGTGAGA+CGG - chr5_1:65582478-65582497 None:intergenic 30.0%
!!! CTCACAATAAGTGTCATTTT+AGG + chr5_1:65582479-65582498 Msa0744690:intron 30.0%
!!! TTTCGACTTTTTCGTAATTG+CGG + chr5_1:65583094-65583113 Msa0744690:intron 30.0%
TTAGCATTTGAGTGAAATGA+TGG - chr5_1:65583152-65583171 None:intergenic 30.0%
CAAATGCTAAGAAATATTGC+AGG + chr5_1:65583162-65583181 Msa0744690:intron 30.0%
AGTTACTTGCATTCTTTGTT+GGG + chr5_1:65583246-65583265 Msa0744690:CDS 30.0%
TTGTAAGAAGCAAAATCATG+AGG - chr5_1:65583293-65583312 None:intergenic 30.0%
!! GATTTTAGTATCGTTCCTTT+AGG - chr5_1:65583510-65583529 None:intergenic 30.0%
!!! TATTCTCATAACTTTTTCGC+TGG - chr5_1:65583532-65583551 None:intergenic 30.0%
TAGGAACTAATATGGTAAAG+TGG - chr5_1:65583619-65583638 None:intergenic 30.0%
TCTAAATAGGTAGAATGGAA+AGG - chr5_1:65583813-65583832 None:intergenic 30.0%
ACTTGATTTAGATTATGTCC+AGG + chr5_1:65583845-65583864 Msa0744690:intron 30.0%
! CACTTTGATTTAAGAGAAAC+GGG - chr5_1:65584019-65584038 None:intergenic 30.0%
! CCACTTTGATTTAAGAGAAA+CGG - chr5_1:65584020-65584039 None:intergenic 30.0%
! GATATCTTGACGAATTTTCT+TGG + chr5_1:65584221-65584240 Msa0744690:CDS 30.0%
! ATAATTTAAGGCCTAGTTAG+TGG - chr5_1:65584263-65584282 None:intergenic 30.0%
! TTTTCATATACTTTGTCAGG+AGG + chr5_1:65584290-65584309 Msa0744690:intron 30.0%
! GCTTTATTGGTGCAATTAAT+GGG + chr5_1:65584591-65584610 Msa0744690:CDS 30.0%
CTTTATTGGTGCAATTAATG+GGG + chr5_1:65584592-65584611 Msa0744690:CDS 30.0%
AGTAAACTTCATATGATCTG+TGG + chr5_1:65584759-65584778 Msa0744690:intron 30.0%
! TACGTCTAATTTTTGTTGAG+GGG - chr5_1:65584832-65584851 None:intergenic 30.0%
ACATTGTTCTTATAAATGGC+AGG + chr5_1:65584860-65584879 Msa0744690:intron 30.0%
TACACACTATAAACAATCTC+GGG + chr5_1:65585010-65585029 Msa0744690:intron 30.0%
!! AATCTCGGGATATTATTTTG+CGG + chr5_1:65585024-65585043 Msa0744690:intron 30.0%
!! TTAAAAGAGCATCAAAATGC+AGG - chr5_1:65585283-65585302 None:intergenic 30.0%
TCAAGATTTGTACAAAGAAC+AGG - chr5_1:65585451-65585470 None:intergenic 30.0%
GTTCTTTGTACAAATCTTGA+AGG + chr5_1:65585451-65585470 Msa0744690:CDS 30.0%
!! AAGGAGACTTGTTAAAAGTA+AGG + chr5_1:65585470-65585489 Msa0744690:CDS 30.0%
AGATCTTCAAATGGAACAAT+TGG + chr5_1:65585726-65585745 Msa0744690:CDS 30.0%
TGCAGTAGTAGCTAAAAAAA+TGG - chr5_1:65585771-65585790 None:intergenic 30.0%
TATAATACATACAGTCTGCA+AGG - chr5_1:65585927-65585946 None:intergenic 30.0%
AATAACTTATTGCGGAACAA+TGG + chr5_1:65586234-65586253 Msa0744690:intron 30.0%
! AATAATGAGAGTATAAGTGG+TGG - chr5_1:65586518-65586537 None:intergenic 30.0%
ACCACTTATACTCTCATTAT+TGG + chr5_1:65586517-65586536 Msa0744690:CDS 30.0%
! TCCAATAATGAGAGTATAAG+TGG - chr5_1:65586521-65586540 None:intergenic 30.0%
TTAGTTAAGAGCGAATTGTT+CGG - chr5_1:65586763-65586782 None:intergenic 30.0%
TTCGCTCTTAACTAAAGTTT+AGG + chr5_1:65586768-65586787 Msa0744690:intron 30.0%
CAGTGTAAAGTTATTTAAGG+GGG + chr5_1:65587125-65587144 Msa0744690:three_prime_UTR 30.0%
GAAGACACAACTACTATGTA+AGG + chr5_1:65581629-65581648 Msa0744690:CDS 35.0%
AGAAGGAAGATACAAAGAAG+AGG - chr5_1:65581685-65581704 None:intergenic 35.0%
GTTGTGAGAAACATTTGTGA+AGG - chr5_1:65581725-65581744 None:intergenic 35.0%
! CTTCATCATCCTTTTCTTCT+TGG - chr5_1:65581767-65581786 None:intergenic 35.0%
AAAATAGCAATGCACTAACC+AGG - chr5_1:65581870-65581889 None:intergenic 35.0%
! CTTATCTAGTGCAATTTTCC+TGG + chr5_1:65582008-65582027 Msa0744690:CDS 35.0%
TGCTTATATAAGCCTGTTCA+TGG + chr5_1:65582149-65582168 Msa0744690:intron 35.0%
ATAAAGTGGTTTCCATGAAC+AGG - chr5_1:65582164-65582183 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr5_1:65582230-65582249 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr5_1:65582231-65582250 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr5_1:65582244-65582263 None:intergenic 35.0%
GTTTAATAATCCCTTCGTCT+CGG - chr5_1:65582435-65582454 None:intergenic 35.0%
AGTAAGAGTAGTGCTATAGT+TGG + chr5_1:65582596-65582615 Msa0744690:intron 35.0%
AGTGTTTATCAGACTATGCA+GGG + chr5_1:65582776-65582795 Msa0744690:intron 35.0%
TCCGATATCGATATCTTATG+CGG + chr5_1:65582931-65582950 Msa0744690:intron 35.0%
ACCGCATAAGATATCGATAT+CGG - chr5_1:65582935-65582954 None:intergenic 35.0%
TGCTAAGAAATATTGCAGGT+AGG + chr5_1:65583166-65583185 Msa0744690:intron 35.0%
CAGTTACTTGCATTCTTTGT+TGG + chr5_1:65583245-65583264 Msa0744690:CDS 35.0%
AATATGGTAAAGTGGCATCA+TGG - chr5_1:65583611-65583630 None:intergenic 35.0%
! CACTTGTGCATTCTATCTTT+TGG + chr5_1:65583762-65583781 Msa0744690:intron 35.0%
AGATTATGTCCAGGTATCAA+TGG + chr5_1:65583854-65583873 Msa0744690:intron 35.0%
CAGTAGGAGTTCAAATTTCA+TGG + chr5_1:65583895-65583914 Msa0744690:CDS 35.0%
TCAACATGCGTAACATAACA+CGG + chr5_1:65583968-65583987 Msa0744690:intron 35.0%
CCGTTTCTCTTAAATCAAAG+TGG + chr5_1:65584017-65584036 Msa0744690:intron 35.0%
! CAATGTGATTTTGTTGCAGT+TGG + chr5_1:65584144-65584163 Msa0744690:intron 35.0%
AGCTATATAGGCAATCAGAA+GGG - chr5_1:65584192-65584211 None:intergenic 35.0%
ATCTGAAGAACGAGCTATAT+AGG - chr5_1:65584204-65584223 None:intergenic 35.0%
TTGAATGTAAGCACATGCTT+CGG + chr5_1:65584505-65584524 Msa0744690:intron 35.0%
! CGCTTTATTGGTGCAATTAA+TGG + chr5_1:65584590-65584609 Msa0744690:CDS 35.0%
! ATTAATGGGGTTCTAGTAGT+TGG + chr5_1:65584605-65584624 Msa0744690:CDS 35.0%
TTAGATTAGACGGTTGAGAT+TGG + chr5_1:65585087-65585106 Msa0744690:intron 35.0%
CTATATTAGACAGTTGCAAG+TGG + chr5_1:65585254-65585273 Msa0744690:intron 35.0%
! ACAAATGAGAGTGCGATAAT+CGG - chr5_1:65585338-65585357 None:intergenic 35.0%
CAAACTAGGAACAGAATAAG+TGG - chr5_1:65585642-65585661 None:intergenic 35.0%
CACTTATTCTGTTCCTAGTT+TGG + chr5_1:65585640-65585659 Msa0744690:CDS 35.0%
ATTCTGTTCCTAGTTTGGAA+TGG + chr5_1:65585645-65585664 Msa0744690:CDS 35.0%
!! TGTAATGGATCTAATCCCAT+TGG - chr5_1:65585699-65585718 None:intergenic 35.0%
GAAGATCTCAACTGTTGTAA+TGG - chr5_1:65585714-65585733 None:intergenic 35.0%
CAACAGTTGAGATCTTCAAA+TGG + chr5_1:65585717-65585736 Msa0744690:CDS 35.0%
AGGCTGCAGAATCAAATTAA+GGG - chr5_1:65585833-65585852 None:intergenic 35.0%
TAGGCTGCAGAATCAAATTA+AGG - chr5_1:65585834-65585853 None:intergenic 35.0%
AGTGAGAAGATCTCAACTAT+AGG - chr5_1:65585853-65585872 None:intergenic 35.0%
GCAATTGCTACATCTTACAT+TGG + chr5_1:65585877-65585896 Msa0744690:CDS 35.0%
TATCTAATGAAAGCGAGTGT+CGG + chr5_1:65586079-65586098 Msa0744690:intron 35.0%
! AATTTGCTCAAATACCACTG+TGG + chr5_1:65586258-65586277 Msa0744690:intron 35.0%
AGCCTAATGTTGTCAAATAG+CGG - chr5_1:65586319-65586338 None:intergenic 35.0%
TTGGTTATTAAGCATGCAAG+AGG - chr5_1:65586360-65586379 None:intergenic 35.0%
TAGTTAAGAGCGAATTGTTC+GGG - chr5_1:65586762-65586781 None:intergenic 35.0%
AAACTACCTGAAATAGTTCC+AGG + chr5_1:65586927-65586946 Msa0744690:CDS 35.0%
ATAACCCTACTAATGGTTCT+TGG + chr5_1:65586957-65586976 Msa0744690:CDS 35.0%
ACAACCAAGAACCATTAGTA+GGG - chr5_1:65586964-65586983 None:intergenic 35.0%
AACAACCAAGAACCATTAGT+AGG - chr5_1:65586965-65586984 None:intergenic 35.0%
!!! AGGGGGTATTTTAGAGAAAA+TGG + chr5_1:65587142-65587161 Msa0744690:three_prime_UTR 35.0%
GAAGGTCAATAGAAACAGAT+TGG - chr5_1:65587190-65587209 None:intergenic 35.0%
CATAGTAGTTGTGTCTTCCT+TGG - chr5_1:65581627-65581646 None:intergenic 40.0%
! ACCAGGTTCTCTCTTTAAAG+TGG - chr5_1:65581853-65581872 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr5_1:65582228-65582247 Msa0744690:intron 40.0%
GTTAGTTATTCCGAGACGAA+GGG + chr5_1:65582422-65582441 Msa0744690:intron 40.0%
TAGTCTGATAAACACTGCTC+AGG - chr5_1:65582772-65582791 None:intergenic 40.0%
CAGTGTTTATCAGACTATGC+AGG + chr5_1:65582775-65582794 Msa0744690:intron 40.0%
GTTGAGTACACTTCAGATGA+AGG + chr5_1:65582798-65582817 Msa0744690:intron 40.0%
!! GAAGGCGTATTTGTTGTTTG+AGG + chr5_1:65582816-65582835 Msa0744690:intron 40.0%
! ATGATGCACTGACACAAACA+TGG - chr5_1:65582960-65582979 None:intergenic 40.0%
AATGCATAGCTGCAAAACGT+GGG + chr5_1:65583066-65583085 Msa0744690:intron 40.0%
AAATATTGCAGGTAGGTGCA+GGG + chr5_1:65583173-65583192 Msa0744690:intron 40.0%
CATTCTTTGTTGGGCATTCA+TGG + chr5_1:65583255-65583274 Msa0744690:CDS 40.0%
TCAATGGCCAGAAGAACTTT+AGG + chr5_1:65583870-65583889 Msa0744690:CDS 40.0%
CAATGGCCAGAAGAACTTTA+GGG + chr5_1:65583871-65583890 Msa0744690:CDS 40.0%
TACTGTCCCTAAAGTTCTTC+TGG - chr5_1:65583880-65583899 None:intergenic 40.0%
! AGAAGAACTTTAGGGACAGT+AGG + chr5_1:65583879-65583898 Msa0744690:CDS 40.0%
TTAAGAGAAACGGGAACAAC+TGG - chr5_1:65584010-65584029 None:intergenic 40.0%
TGCAATAGTTAGGGTTACAG+AGG + chr5_1:65584060-65584079 Msa0744690:intron 40.0%
GCAATAGTTAGGGTTACAGA+GGG + chr5_1:65584061-65584080 Msa0744690:intron 40.0%
GAGCTATATAGGCAATCAGA+AGG - chr5_1:65584193-65584212 None:intergenic 40.0%
! CTAGTTAGTGGCTTGTACAT+GGG - chr5_1:65584251-65584270 None:intergenic 40.0%
! TTTGGAGGCATATGCTACTT+TGG + chr5_1:65584368-65584387 Msa0744690:CDS 40.0%
GGAGACACCGGTAATAATTT+AGG + chr5_1:65584469-65584488 Msa0744690:intron 40.0%
CTCTAGTCTCTCACACATAA+CGG - chr5_1:65584538-65584557 None:intergenic 40.0%
ATTTGTAGCCAGCGCTTTAT+TGG + chr5_1:65584578-65584597 Msa0744690:intron 40.0%
TAATTGCACCAATAAAGCGC+TGG - chr5_1:65584589-65584608 None:intergenic 40.0%
!! GATATTATTTTGCGGCTGGA+CGG + chr5_1:65585032-65585051 Msa0744690:intron 40.0%
GCGATAATCGGTATACTCAT+TGG - chr5_1:65585326-65585345 None:intergenic 40.0%
TGGAGATTAAGGAAGTTACC+TGG - chr5_1:65585364-65585383 None:intergenic 40.0%
! TGCAGGAGTGCAATAATACT+AGG + chr5_1:65585606-65585625 Msa0744690:intron 40.0%
AGTGCAATAATACTAGGCAC+TGG + chr5_1:65585612-65585631 Msa0744690:CDS 40.0%
GGATAACACCATTCCAAACT+AGG - chr5_1:65585656-65585675 None:intergenic 40.0%
!! GTTTGGAATGGTGTTATCCT+AGG + chr5_1:65585657-65585676 Msa0744690:CDS 40.0%
!! AACTGTTGGTGACAATCCAA+TGG + chr5_1:65585680-65585699 Msa0744690:CDS 40.0%
!! ACTGTTGGTGACAATCCAAT+GGG + chr5_1:65585681-65585700 Msa0744690:CDS 40.0%
GAGTGTGTCAGACATATTTC+TGG - chr5_1:65586020-65586039 None:intergenic 40.0%
TCAAATACCACTGTGGTCTA+CGG + chr5_1:65586265-65586284 Msa0744690:intron 40.0%
AGCCGCTATTTGACAACATT+AGG + chr5_1:65586314-65586333 Msa0744690:intron 40.0%
TCAGTGTTAAATCTCCCAAC+AGG + chr5_1:65586455-65586474 Msa0744690:intron 40.0%
! TTTAAAGCCTTGGACTTTGC+TGG + chr5_1:65586554-65586573 Msa0744690:CDS 40.0%
ATATGTTCCAGCAAAGTCCA+AGG - chr5_1:65586564-65586583 None:intergenic 40.0%
TTGGACTTTGCTGGAACATA+TGG + chr5_1:65586563-65586582 Msa0744690:CDS 40.0%
TTTATCTCACAGACGAACTC+CGG - chr5_1:65586691-65586710 None:intergenic 40.0%
TTTCAGCCTGAATTCGAACT+CGG + chr5_1:65586731-65586750 Msa0744690:intron 40.0%
TTATTCCAGCTGCAATGTCT+TGG + chr5_1:65586871-65586890 Msa0744690:CDS 40.0%
AGGAAGGATAACCCTACTAA+TGG + chr5_1:65586950-65586969 Msa0744690:CDS 40.0%
CTAATGGTTCTTGGTTGTTC+AGG + chr5_1:65586966-65586985 Msa0744690:CDS 40.0%
! GCCACTTTAAAGAGAGAACC+TGG + chr5_1:65581849-65581868 Msa0744690:CDS 45.0%
! AGTGCAATTTTCCTGGTTGC+AGG + chr5_1:65582015-65582034 Msa0744690:CDS 45.0%
ATTACTTACTACCTCCGTCC+CGG + chr5_1:65582209-65582228 Msa0744690:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr5_1:65582226-65582245 None:intergenic 45.0%
! GGTTAGTTATTCCGAGACGA+AGG + chr5_1:65582421-65582440 Msa0744690:intron 45.0%
CAATGCATAGCTGCAAAACG+TGG + chr5_1:65583065-65583084 Msa0744690:intron 45.0%
GAAATATTGCAGGTAGGTGC+AGG + chr5_1:65583172-65583191 Msa0744690:intron 45.0%
CATCTGATGAGAAATCCTGC+AGG + chr5_1:65583392-65583411 Msa0744690:intron 45.0%
GTCAACACCATGTGTGATCT+CGG + chr5_1:65583447-65583466 Msa0744690:CDS 45.0%
TTCTTCTGGCCATTGATACC+TGG - chr5_1:65583866-65583885 None:intergenic 45.0%
! CCTAGTTAGTGGCTTGTACA+TGG - chr5_1:65584252-65584271 None:intergenic 45.0%
CCATGTACAAGCCACTAACT+AGG + chr5_1:65584249-65584268 Msa0744690:intron 45.0%
CTTTGTCAGGAGGCTAATAC+CGG + chr5_1:65584300-65584319 Msa0744690:intron 45.0%
!!! ACCGGCATTTTGGTTACAGA+TGG + chr5_1:65584318-65584337 Msa0744690:intron 45.0%
CCCATCTGTAACCAAAATGC+CGG - chr5_1:65584322-65584341 None:intergenic 45.0%
!!! CCGGCATTTTGGTTACAGAT+GGG + chr5_1:65584319-65584338 Msa0744690:intron 45.0%
!! GAGGCATATGCTACTTTGGA+AGG + chr5_1:65584372-65584391 Msa0744690:CDS 45.0%
!!! CAGCTTTTTTGCAGCTCTTG+TGG + chr5_1:65584634-65584653 Msa0744690:CDS 45.0%
!! TCGGGATATTATTTTGCGGC+TGG + chr5_1:65585028-65585047 Msa0744690:intron 45.0%
TGCGTGATGAAGTTACTGCA+TGG + chr5_1:65585114-65585133 Msa0744690:intron 45.0%
TGCATGGAATCTGTTTCCAG+CGG + chr5_1:65585130-65585149 Msa0744690:intron 45.0%
GTATACTCATTGGAGCTGCT+TGG - chr5_1:65585316-65585335 None:intergenic 45.0%
CGCACTCTCATTTGTTTACC+AGG + chr5_1:65585343-65585362 Msa0744690:CDS 45.0%
! GGTGTTATCCTAGGAACTGT+TGG + chr5_1:65585666-65585685 Msa0744690:CDS 45.0%
GATTGTCACCAACAGTTCCT+AGG - chr5_1:65585677-65585696 None:intergenic 45.0%
GTGTTGTCAACTGCGAATAG+TGG + chr5_1:65586148-65586167 Msa0744690:intron 45.0%
CTGCGAATAGTGGCAAATAG+CGG + chr5_1:65586158-65586177 Msa0744690:intron 45.0%
! TGTATGGAAGAGGCCTGTTT+TGG - chr5_1:65586481-65586500 None:intergenic 45.0%
GACTTTGCTGGAACATATGG+AGG + chr5_1:65586566-65586585 Msa0744690:CDS 45.0%
TCCTTAACCCTCCAGTTTCT+TGG + chr5_1:65586646-65586665 Msa0744690:intron 45.0%
CCTTAACCCTCCAGTTTCTT+GGG + chr5_1:65586647-65586666 Msa0744690:intron 45.0%
CTTAACCCTCCAGTTTCTTG+GGG + chr5_1:65586648-65586667 Msa0744690:intron 45.0%
TTCAGCCTGAATTCGAACTC+GGG + chr5_1:65586732-65586751 Msa0744690:intron 45.0%
GAAAACCCGAGTTCGAATTC+AGG - chr5_1:65586740-65586759 None:intergenic 45.0%
!!! CTGATAGTGCTGCTGCTTTT+CGG + chr5_1:65586846-65586865 Msa0744690:intron 45.0%
CTGCAATGTCTTGGTCAGAT+AGG + chr5_1:65586880-65586899 Msa0744690:CDS 45.0%
CTACCTGAAATAGTTCCAGG+AGG + chr5_1:65586930-65586949 Msa0744690:CDS 45.0%
CTTCCTCCTGGAACTATTTC+AGG - chr5_1:65586936-65586955 None:intergenic 45.0%
CTGAAATAGTTCCAGGAGGA+AGG + chr5_1:65586934-65586953 Msa0744690:CDS 45.0%
TTTCCTGGTTGCAGGCACTA+CGG + chr5_1:65582023-65582042 Msa0744690:CDS 50.0%
! CCTGATTCTTGTGTCACTGC+AGG - chr5_1:65583211-65583230 None:intergenic 50.0%
CCTGCAGTGACACAAGAATC+AGG + chr5_1:65583208-65583227 Msa0744690:CDS 50.0%
GAAATCCTGCAGGTTGTGAC+AGG + chr5_1:65583402-65583421 Msa0744690:intron 50.0%
AACACGGCTTCATCAGAGCT+CGG + chr5_1:65583984-65584003 Msa0744690:intron 50.0%
! AGGCAATCAGAAGGGCGTAA+TGG - chr5_1:65584184-65584203 None:intergenic 50.0%
! GGAGGCTAATACCGGCATTT+TGG + chr5_1:65584308-65584327 Msa0744690:intron 50.0%
CTGACACAGTGACACTGACA+CGG + chr5_1:65584448-65584467 Msa0744690:intron 50.0%
CATTGGAGCTGCTTGGAAGT+TGG - chr5_1:65585309-65585328 None:intergenic 50.0%
ATACCACTGTGGTCTACGGA+CGG + chr5_1:65586269-65586288 Msa0744690:intron 50.0%
ATCTCCCAACAGGCCAAAAC+AGG + chr5_1:65586465-65586484 Msa0744690:CDS 50.0%
CCCAAGAAACTGGAGGGTTA+AGG - chr5_1:65586650-65586669 None:intergenic 50.0%
TCCTTCCCCAAGAAACTGGA+GGG - chr5_1:65586656-65586675 None:intergenic 50.0%
AGACGAACTCCGGATTCTCA+GGG - chr5_1:65586681-65586700 None:intergenic 50.0%
TCTGACCAAGACATTGCAGC+TGG - chr5_1:65586879-65586898 None:intergenic 50.0%
AGTAGGGTTATCCTTCCTCC+TGG - chr5_1:65586948-65586967 None:intergenic 50.0%
AAACCGTAGTGCCTGCAACC+AGG - chr5_1:65582029-65582048 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr5_1:65582223-65582242 None:intergenic 55.0%
GCAAACCTGTCACAACCTGC+AGG - chr5_1:65583410-65583429 None:intergenic 55.0%
ACCATGTGTGATCTCGGCTC+TGG + chr5_1:65583453-65583472 Msa0744690:CDS 55.0%
! ATGTGTGATCTCGGCTCTGG+CGG + chr5_1:65583456-65583475 Msa0744690:CDS 55.0%
TGACACTGACACGGAGACAC+CGG + chr5_1:65584457-65584476 Msa0744690:intron 55.0%
ATACCGTCCGTAGACCACAG+TGG - chr5_1:65586275-65586294 None:intergenic 55.0%
!!! GAGGCCTGTTTTGGCCTGTT+GGG - chr5_1:65586472-65586491 None:intergenic 55.0%
!!! AGAGGCCTGTTTTGGCCTGT+TGG - chr5_1:65586473-65586492 None:intergenic 55.0%
ACCCTCCAGTTTCTTGGGGA+AGG + chr5_1:65586652-65586671 Msa0744690:intron 55.0%
CTCCTTCCCCAAGAAACTGG+AGG - chr5_1:65586657-65586676 None:intergenic 55.0%
CTCCAGTTTCTTGGGGAAGG+AGG + chr5_1:65586655-65586674 Msa0744690:intron 55.0%
CAGACGAACTCCGGATTCTC+AGG - chr5_1:65586682-65586701 None:intergenic 55.0%
GCCAGAGCCGAGATCACACA+TGG - chr5_1:65583457-65583476 None:intergenic 60.0%
! CGGCTCTGGCGGTGTATCAT+TGG + chr5_1:65583467-65583486 Msa0744690:CDS 60.0%
GGCCTCCTTCCCCAAGAAAC+TGG - chr5_1:65586660-65586679 None:intergenic 60.0%
GGAAGGAGGCCCTGAGAATC+CGG + chr5_1:65586669-65586688 Msa0744690:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 65581506 65587251 65581506 ID=Msa0744690;Name=Msa0744690
chr5_1 mRNA 65581506 65587251 65581506 ID=Msa0744690-mRNA-1;Parent=Msa0744690;Name=Msa0744690-mRNA-1;_AED=0.20;_eAED=0.20;_QI=52|1|1|1|1|1|14|217|492
chr5_1 exon 65581506 65581870 65581506 ID=Msa0744690-mRNA-1:exon:19491;Parent=Msa0744690-mRNA-1
chr5_1 exon 65582004 65582044 65582004 ID=Msa0744690-mRNA-1:exon:19492;Parent=Msa0744690-mRNA-1
chr5_1 exon 65583184 65583276 65583184 ID=Msa0744690-mRNA-1:exon:19493;Parent=Msa0744690-mRNA-1
chr5_1 exon 65583414 65583488 65583414 ID=Msa0744690-mRNA-1:exon:19494;Parent=Msa0744690-mRNA-1
chr5_1 exon 65583867 65583916 65583867 ID=Msa0744690-mRNA-1:exon:19495;Parent=Msa0744690-mRNA-1
chr5_1 exon 65584163 65584252 65584163 ID=Msa0744690-mRNA-1:exon:19496;Parent=Msa0744690-mRNA-1
chr5_1 exon 65584337 65584393 65584337 ID=Msa0744690-mRNA-1:exon:19497;Parent=Msa0744690-mRNA-1
chr5_1 exon 65584586 65584655 65584586 ID=Msa0744690-mRNA-1:exon:19498;Parent=Msa0744690-mRNA-1
chr5_1 exon 65585263 65585364 65585263 ID=Msa0744690-mRNA-1:exon:19499;Parent=Msa0744690-mRNA-1
chr5_1 exon 65585439 65585491 65585439 ID=Msa0744690-mRNA-1:exon:19500;Parent=Msa0744690-mRNA-1
chr5_1 exon 65585611 65585749 65585611 ID=Msa0744690-mRNA-1:exon:19501;Parent=Msa0744690-mRNA-1
chr5_1 exon 65585850 65585934 65585850 ID=Msa0744690-mRNA-1:exon:19502;Parent=Msa0744690-mRNA-1
chr5_1 exon 65586459 65586587 65586459 ID=Msa0744690-mRNA-1:exon:19503;Parent=Msa0744690-mRNA-1
chr5_1 exon 65586853 65587251 65586853 ID=Msa0744690-mRNA-1:exon:19504;Parent=Msa0744690-mRNA-1
chr5_1 five_prime_UTR 65581506 65581557 65581506 ID=Msa0744690-mRNA-1:five_prime_utr;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65581558 65581870 65581558 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65582004 65582044 65582004 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65583184 65583276 65583184 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65583414 65583488 65583414 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65583867 65583916 65583867 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65584163 65584252 65584163 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65584337 65584393 65584337 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65584586 65584655 65584586 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65585263 65585364 65585263 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65585439 65585491 65585439 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65585611 65585749 65585611 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65585850 65585934 65585850 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65586459 65586587 65586459 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 CDS 65586853 65587034 65586853 ID=Msa0744690-mRNA-1:cds;Parent=Msa0744690-mRNA-1
chr5_1 three_prime_UTR 65587035 65587251 65587035 ID=Msa0744690-mRNA-1:three_prime_utr;Parent=Msa0744690-mRNA-1
Gene Sequence

>Msa0744690

ATGGTTATGTTGTTGTCTTGTTCTACTCTTTCACCATTCTTTCATATTCCAAATTTTTTGATCAAACCAAGGAAGACACAACTACTATGTAAGGATCATTTATTTCATCAAACTACACTTCAATCCTCTTCTTTGTATCTTCCTTCTTCTATGAATAGAAAAAACCTTCACAAATGTTTCTCACAACAAGAACAATCTCAATCTATCCAAGAAGAAAAGGATGATGAAGAACAAGAACAAGAACAACTACATGCATTTCAATTTGAGCGTTTGTTTTCAAACCTTAATCAAGCCACTTTAAAGAGAGAACCTGGAAGCTTATCTAGTGCAATTTTCCTGGTTGCAGGCACTACGGTAGGTGCAGGGATACTTGCAATTCCTGCAGTGACACAAGAATCAGGCTTTTTAGCATCAACAGTTACTTGCATTCTTTGTTGGGCATTCATGGTTGTGACAGGTTTGCTCGTTGCAGAAGTAAATGTCAACACCATGTGTGATCTCGGCTCTGGCGGTGTATCATTGGTATCAATGGCCAGAAGAACTTTAGGGACAGTAGGAGTTCAAATTTCATGTTGGTCATACATCTTCATCCATTACGCCCTTCTGATTGCCTATATAGCTCGTTCTTCAGATATCTTGACGAATTTTCTTGGCATTCCCATATGGGAAAGTGCAACTTTGTTTTCATTGATTTTTGGAGGCATATGCTACTTTGGAAGCCAGCGCTTTATTGGTGCAATTAATGGGGTTCTAGTAGTTGGAATCATCAGCTTTTTTGCAGCTCTTGTGACAGTTGCAAGTGGAAACCTGCATTTTGATGCTCTTTTAAAAGCCAACTTCCAAGCAGCTCCAATGAGTATACCGATTATCGCACTCTCATTTGTTTACCAGAATGTAGTACCTGTTCTTTGTACAAATCTTGAAGGAGACTTGTTAAAAGTAAGGAGTGCAATAATACTAGGCACTGGTATACCACTTATTCTGTTCCTAGTTTGGAATGGTGTTATCCTAGGAACTGTTGGTGACAATCCAATGGGATTAGATCCATTACAACAGTTGAGATCTTCAAATGGAACAATTGGACCTATAGTTGAGATCTTCTCACTGCTTGCAATTGCTACATCTTACATTGGATTTGTTTTGGGTTTGACAGACTTCCTTGCAGACTTGTTAAATCTCCCAACAGGCCAAAACAGGCCTCTTCCATACATACTGACTTTAGTTCCACCACTTATACTCTCATTATTGGACCCTGAAATATTTTTTAAAGCCTTGGACTTTGCTGGAACATATGGAGTGCTGCTGCTTTTCGGAGTTATTCCAGCTGCAATGTCTTGGTCAGATAGGAACTCAAATTCAACTTCATCTGTGAAACTACCTGAAATAGTTCCAGGAGGAAGGATAACCCTACTAATGGTTCTTGGTTGTTCAGGATATGTTATTCTTTCTGAATTATTTGAGAACTTGCAGCACCTTTGA

Protein sequence

>Msa0744690

MVMLLSCSTLSPFFHIPNFLIKPRKTQLLCKDHLFHQTTLQSSSLYLPSSMNRKNLHKCFSQQEQSQSIQEEKDDEEQEQEQLHAFQFERLFSNLNQATLKREPGSLSSAIFLVAGTTVGAGILAIPAVTQESGFLASTVTCILCWAFMVVTGLLVAEVNVNTMCDLGSGGVSLVSMARRTLGTVGVQISCWSYIFIHYALLIAYIARSSDILTNFLGIPIWESATLFSLIFGGICYFGSQRFIGAINGVLVVGIISFFAALVTVASGNLHFDALLKANFQAAPMSIPIIALSFVYQNVVPVLCTNLEGDLLKVRSAIILGTGIPLILFLVWNGVILGTVGDNPMGLDPLQQLRSSNGTIGPIVEIFSLLAIATSYIGFVLGLTDFLADLLNLPTGQNRPLPYILTLVPPLILSLLDPEIFFKALDFAGTYGVLLLFGVIPAAMSWSDRNSNSTSSVKLPEIVPGGRITLLMVLGCSGYVILSELFENLQHL*