AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264930 MtrunA17_Chr2g0329421 98.104 211 4 0 1 211 1 211 6.30e-155 427
Msa0264930 MtrunA17_Chr4g0033611 68.878 196 58 2 1 194 50 244 7.67e-96 280
Msa0264930 MtrunA17_Chr3g0078041 41.304 184 99 3 23 202 46 224 9.10e-41 138
Msa0264930 MtrunA17_Chr2g0329361 36.757 185 104 4 26 198 60 243 4.85e-35 124
Msa0264930 MtrunA17_Chr7g0233911 37.705 183 104 3 24 202 31 207 1.87e-33 119
Msa0264930 MtrunA17_Chr5g0448761 54.128 109 45 3 26 129 59 167 1.03e-21 92.8
Msa0264930 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 182 271 2.32e-21 91.7
Msa0264930 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 28 117 1.93e-18 83.2
Msa0264930 MtrunA17_Chr6g0458391 40.196 102 60 1 27 127 225 326 3.35e-20 88.2
Msa0264930 MtrunA17_Chr6g0458391 38.318 107 65 1 27 132 91 197 1.40e-16 77.8
Msa0264930 MtrunA17_Chr1g0202341 38.596 114 58 3 26 132 50 158 1.72e-19 86.3
Msa0264930 MtrunA17_Chr3g0082121 40.952 105 60 2 27 129 43 147 1.85e-18 83.2
Msa0264930 MtrunA17_Chr5g0401121 39.815 108 59 3 27 130 56 161 2.57e-18 78.6
Msa0264930 MtrunA17_Chr1g0203721 39.796 98 58 1 29 125 65 162 1.73e-17 80.5
Msa0264930 MtrunA17_Chr2g0291591 34.058 138 86 2 22 157 57 191 1.40e-15 74.7
Msa0264930 MtrunA17_Chr5g0440451 36.538 104 54 2 24 127 40 131 9.32e-15 72.4
Msa0264930 MtrunA17_Chr2g0291581 38.235 102 58 2 27 127 71 168 4.03e-13 67.8
Msa0264930 MtrunA17_Chr3g0080351 31.405 121 69 2 26 132 75 195 1.04e-12 66.6
Msa0264930 MtrunA17_Chr8g0363841 30.088 113 75 2 25 133 12 124 1.55e-12 65.9
Msa0264930 MtrunA17_Chr7g0258861 35.577 104 64 2 26 127 9 111 6.36e-12 63.5
Msa0264930 MtrunA17_Chr2g0324011 38.462 104 60 3 26 127 9 110 2.07e-11 62.4
Msa0264930 MtrunA17_Chr2g0329031 31.304 115 73 3 20 132 7 117 2.11e-11 62.8
Msa0264930 MtrunA17_Chr1g0171741 36.275 102 59 4 32 129 138 237 9.64e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264930 AT3G59470.3 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa0264930 AT3G59470.1 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa0264930 AT3G59470.2 67.391 184 60 0 25 208 80 263 6.74e-95 278
Msa0264930 AT3G07500.1 42.487 193 100 4 18 199 17 209 4.71e-47 154
Msa0264930 AT2G43280.1 38.462 195 107 4 16 202 7 196 2.01e-35 124
Msa0264930 AT4G12850.1 34.973 183 106 3 24 202 8 181 3.01e-34 120
Msa0264930 AT2G43280.2 39.394 165 91 3 42 202 2 161 1.01e-32 116
Msa0264930 AT4G38180.1 56.481 108 43 2 26 129 72 179 2.60e-25 103
Msa0264930 AT4G12850.4 44.231 104 56 1 24 127 8 109 1.91e-24 94.4
Msa0264930 AT4G12850.2 44.231 104 56 1 24 127 8 109 2.35e-24 94.0
Msa0264930 AT3G06250.2 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0264930 AT3G06250.2 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0264930 AT3G06250.1 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0264930 AT3G06250.1 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0264930 AT3G06250.3 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa0264930 AT3G06250.3 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa0264930 AT5G18960.2 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa0264930 AT5G18960.2 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa0264930 AT5G18960.1 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa0264930 AT5G18960.1 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa0264930 AT1G52520.1 36.792 106 64 1 22 127 80 182 7.54e-17 79.0
Msa0264930 AT1G80010.1 36.792 106 64 1 27 132 95 197 2.05e-15 74.7
Msa0264930 AT4G19990.6 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa0264930 AT4G19990.2 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa0264930 AT4G19990.7 30.000 150 75 3 24 159 35 168 2.41e-14 71.6
Msa0264930 AT4G19990.3 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa0264930 AT4G19990.4 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa0264930 AT4G19990.5 30.000 150 75 3 24 159 21 154 2.81e-14 71.2
Msa0264930 AT5G28530.1 31.707 123 78 4 10 127 38 159 5.66e-13 67.4
Msa0264930 AT5G28530.3 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa0264930 AT5G28530.2 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa0264930 AT5G28530.4 30.597 134 85 5 1 127 27 159 5.96e-13 67.4
Msa0264930 AT5G28530.5 30.597 134 85 5 1 127 27 159 6.06e-13 67.4
Msa0264930 AT2G32250.6 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0264930 AT2G32250.1 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0264930 AT2G32250.3 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa0264930 AT2G32250.2 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa0264930 AT2G32250.4 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa0264930 AT2G32250.5 33.333 129 78 3 5 129 14 138 9.59e-13 67.0
Msa0264930 AT3G22170.2 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa0264930 AT3G22170.1 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa0264930 AT2G32250.7 35.000 100 59 2 32 129 2 97 1.68e-11 63.2
Msa0264930 AT2G32250.8 35.000 100 59 2 32 129 2 97 1.79e-11 63.2
Msa0264930 AT2G27110.2 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa0264930 AT2G27110.1 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa0264930 AT1G76320.2 35.000 100 59 3 32 129 2 97 5.61e-11 61.6
Msa0264930 AT1G76320.1 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa0264930 AT1G76320.4 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa0264930 AT1G76320.3 35.000 100 59 3 32 129 2 97 7.51e-11 61.2

Find 73 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATGCCTCACCATTAC+TGG 0.248927 2_2:+65090883 None:intergenic
AGGCGTGATGGATCTGTTAT+TGG 0.276667 2_2:-65090575 Msa0264930:CDS
TGGTTGCAGGGCAATGATTA+TGG 0.280378 2_2:-65090468 Msa0264930:CDS
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 2_2:-65090481 Msa0264930:CDS
CAGGAACTATTGAGGTGATT+TGG 0.320322 2_2:+65090735 None:intergenic
TTGTAACTCAGTCCAGCTTT+AGG 0.332915 2_2:-65089342 Msa0264930:three_prime_UTR
AGCGAGCTGAAACCTATAAA+AGG 0.338658 2_2:-65089573 Msa0264930:CDS
GTTCTCATAACCGATGTTAC+AGG 0.348049 2_2:+65090716 None:intergenic
AAGTCCCTTCTGCCTCTTCC+AGG 0.350515 2_2:+65090377 None:intergenic
GTTCAGTTTGTTAAGTTCAA+TGG 0.356308 2_2:-65089302 Msa0264930:three_prime_UTR
CAATGGAATTCAATATTCAT+TGG 0.361135 2_2:-65089285 Msa0264930:three_prime_UTR
AATATGACTCAAGATTCTTC+TGG 0.372511 2_2:-65090764 Msa0264930:CDS
TTTCGATCCAACTGATGAAC+AGG 0.398044 2_2:-65090798 Msa0264930:five_prime_UTR
GCATTAGCAAATGCTACTAT+TGG 0.399597 2_2:-65090869 Msa0264930:five_prime_UTR
GGAAATTAAATTCTGGTCTA+TGG 0.402271 2_2:-65090442 Msa0264930:CDS
AGTAGAGAGTGTGAAGGAGA+TGG 0.412908 2_2:-65089482 Msa0264930:CDS
ATGGTGAGGAAATTAAATTC+TGG 0.421065 2_2:-65090449 Msa0264930:CDS
GGAATAAGAAAATTCTATCA+TGG 0.429067 2_2:+65089128 None:intergenic
ACAAGAGGGTCAGTTTCAAT+TGG 0.447254 2_2:-65089449 Msa0264930:CDS
ATAGCATTAATTCACAAGAA+TGG 0.453968 2_2:+65089189 None:intergenic
GGCGTGATGGATCTGTTATT+GGG 0.455689 2_2:-65090574 Msa0264930:CDS
CTTCGTTTATGAGCAATATC+CGG 0.471781 2_2:-65090357 Msa0264930:intron
TTGTAAATTTGATTCATGGC+TGG 0.473514 2_2:-65089095 None:intergenic
GCTCTAGTTTGTAACAAAGA+AGG 0.478666 2_2:-65090548 Msa0264930:CDS
AACTCACTTGCACCTAAAGC+TGG 0.484241 2_2:+65089330 None:intergenic
AAATGCATGTGCTTCAGCTT+CGG 0.486804 2_2:+65090658 None:intergenic
GGTGCAGTGGAGATTGAGAT+TGG 0.489609 2_2:-65090911 Msa0264930:intron
AATTCATATGCTACACGTGT+TGG 0.492545 2_2:-65090632 Msa0264930:CDS
TGATGGATCTGTTATTGGGC+GGG 0.492905 2_2:-65090570 Msa0264930:CDS
TCTTGATCCTGTTCATCAGT+TGG 0.497177 2_2:+65090791 None:intergenic
CTTTATCAGTGAATGAATGA+TGG 0.507759 2_2:-65089405 Msa0264930:three_prime_UTR
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 2_2:-65090480 Msa0264930:CDS
CTGCCTCTTCCAGGTGTCAG+AGG 0.510409 2_2:+65090386 None:intergenic
CTCAATAGTTCCTGTAACAT+CGG 0.518345 2_2:-65090726 Msa0264930:CDS
GAATAAGAAAATTCTATCAT+GGG 0.524623 2_2:+65089129 None:intergenic
TACAAACTCCTGGCCGATGT+AGG 0.525221 2_2:+65090682 None:intergenic
ACAAGCGGGAAAAGATTGTA+AGG 0.526019 2_2:-65090511 Msa0264930:CDS
CACACACATCCTCTGACACC+TGG 0.532917 2_2:-65090395 Msa0264930:CDS
TACAATAAGCTGCTGAAATG+TGG 0.534589 2_2:-65092250 Msa0264930:five_prime_UTR
CTCTCAAGATCAAGGCGTGA+TGG 0.535255 2_2:-65090587 Msa0264930:CDS
ACAAACTCCTGGCCGATGTA+GGG 0.537780 2_2:+65090683 None:intergenic
TTTCAGAATGCCTGACAAGC+GGG 0.539722 2_2:-65090525 Msa0264930:CDS
GACTAGTTCAGTCAATGTAC+AGG 0.545014 2_2:-65089225 Msa0264930:three_prime_UTR
CATCCTCTGACACCTGGAAG+AGG 0.555269 2_2:-65090389 Msa0264930:CDS
GACTCAAGATTCTTCTGGAG+TGG 0.558618 2_2:-65090759 Msa0264930:CDS
TAAGTAAGCTCTCAAGATCA+AGG 0.559347 2_2:-65090595 Msa0264930:CDS
CAAATTTACAAAATTAACCA+TGG 0.560215 2_2:+65089107 None:intergenic
TAAGGCAAAGGGCAGAAACA+AGG 0.561852 2_2:-65090493 Msa0264930:CDS
TCGAGAACTAACTCAACAGT+TGG 0.562574 2_2:-65089608 Msa0264930:CDS
TGACACCTGGAAGAGGCAGA+AGG 0.566441 2_2:-65090382 Msa0264930:CDS
AAATATAAATAATGCTACAC+AGG 0.567351 2_2:+65092277 None:intergenic
TGATGAACCCTACATCGGCC+AGG 0.568038 2_2:-65090690 Msa0264930:CDS
GGGAAAAGATTGTAAGGCAA+AGG 0.569600 2_2:-65090505 Msa0264930:CDS
GGAAAAGATTGTAAGGCAAA+GGG 0.570713 2_2:-65090504 Msa0264930:CDS
CAGCTTCGGATACAAACTCC+TGG 0.571675 2_2:+65090672 None:intergenic
GGACTGAGTTACAAGTTCAA+TGG 0.572522 2_2:+65089351 None:intergenic
CGATGTTACAGGAACTATTG+AGG 0.587098 2_2:+65090727 None:intergenic
GACACCTGGAAGAGGCAGAA+GGG 0.590498 2_2:-65090381 Msa0264930:CDS
GATGGAAGCTAAAGAACAAG+AGG 0.602786 2_2:-65089464 Msa0264930:CDS
TGTACTCATATAACAAGTCA+AGG 0.602934 2_2:+65089548 None:intergenic
GTGATGGATCTGTTATTGGG+CGG 0.611640 2_2:-65090571 Msa0264930:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 2_2:-65090488 Msa0264930:CDS
AGCAAATGCTACTATTGGAG+AGG 0.632541 2_2:-65090864 Msa0264930:five_prime_UTR
GTTTCAGAATGCCTGACAAG+CGG 0.633841 2_2:-65090526 Msa0264930:CDS
GAGATTGGTGACTCCAGTAA+TGG 0.635105 2_2:-65090896 Msa0264930:five_prime_UTR
ACAATTGATGAACCCTACAT+CGG 0.643960 2_2:-65090695 Msa0264930:CDS
TGGTGACTCCAGTAATGGTG+AGG 0.657202 2_2:-65090891 Msa0264930:five_prime_UTR
AAGGCAAAGGGCAGAAACAA+GGG 0.671184 2_2:-65090492 Msa0264930:CDS
GCAGGGCAATGATTATGGTG+AGG 0.678028 2_2:-65090463 Msa0264930:CDS
GCACATAGTAGAGAGTGTGA+AGG 0.682029 2_2:-65089488 Msa0264930:CDS
ATGGAAGCTAAAGAACAAGA+GGG 0.719285 2_2:-65089463 Msa0264930:CDS
ATTCACAAGAATGGACTCAG+AGG 0.720890 2_2:+65089198 None:intergenic
CTTGTTATATGAGTACATCG+AGG 0.731335 2_2:-65089542 Msa0264930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATAGATTAATAAATTT+TGG + chr2_2:65089365-65089384 None:intergenic 10.0%
!!! TTTTTTTCTTATAAGAAATT+AGG - chr2_2:65089642-65089661 Msa0264930:intron 10.0%
!!! TTTTTTCTTATAAGAAATTA+GGG - chr2_2:65089643-65089662 Msa0264930:intron 10.0%
!! GAGAAATTTATTAATTTAAA+GGG - chr2_2:65089836-65089855 Msa0264930:intron 10.0%
!! TTATTAATTTATGATTTACT+TGG - chr2_2:65090121-65090140 Msa0264930:intron 10.0%
!! TATTAATTTATGATTTACTT+GGG - chr2_2:65090122-65090141 Msa0264930:intron 10.0%
!!! TCTTTTTCTTTTTTTCATTT+AGG - chr2_2:65089460-65089479 Msa0264930:CDS 15.0%
!!! TTTTTTTCATTTAGGTTTTT+GGG - chr2_2:65089468-65089487 Msa0264930:CDS 15.0%
!! GGGAAATTATTATTAATAAT+CGG - chr2_2:65089669-65089688 Msa0264930:intron 15.0%
!! GGAGAAATTTATTAATTTAA+AGG - chr2_2:65089835-65089854 Msa0264930:intron 15.0%
!! ATTAATTTATGATTTACTTG+GGG - chr2_2:65090123-65090142 Msa0264930:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr2_2:65090206-65090225 Msa0264930:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr2_2:65090244-65090263 None:intergenic 15.0%
!!! AAACTCTTTAATTTAATACT+CGG + chr2_2:65090282-65090301 None:intergenic 15.0%
!!! TCTTATATCAAATTTTTTGT+TGG - chr2_2:65090465-65090484 Msa0264930:CDS 15.0%
!!! TTTTAAATAAAGATTTGTAC+AGG + chr2_2:65091152-65091171 None:intergenic 15.0%
!!! AATTTTGTAAATTTGATTCA+TGG - chr2_2:65092298-65092317 Msa0264930:five_prime_UTR 15.0%
!! AAATATAAATAATGCTACAC+AGG + chr2_2:65089123-65089142 None:intergenic 20.0%
!!! TGCTTCTTTTAGTAATAAAT+AGG - chr2_2:65089196-65089215 Msa0264930:three_prime_UTR 20.0%
!! TTGGATTTGATAAAACTTAA+CGG + chr2_2:65089346-65089365 None:intergenic 20.0%
!! AAAATATGAAAATAACCATC+TGG - chr2_2:65089400-65089419 Msa0264930:three_prime_UTR 20.0%
!! GAAAAAAATTGACAATCTTT+AGG + chr2_2:65089442-65089461 None:intergenic 20.0%
!!! CTTTTTTTCATTTAGGTTTT+TGG - chr2_2:65089467-65089486 Msa0264930:CDS 20.0%
!!! AAATATTTAGTGTCATTCAT+AGG - chr2_2:65089722-65089741 Msa0264930:intron 20.0%
!!! AATATTTAGTGTCATTCATA+GGG - chr2_2:65089723-65089742 Msa0264930:intron 20.0%
!! ACTCTATAAATTAATAACGT+CGG - chr2_2:65089808-65089827 Msa0264930:intron 20.0%
!!! TAGTATTTAGTTTAAACCAT+AGG - chr2_2:65090308-65090327 Msa0264930:intron 20.0%
!!! AGTATTTAGTTTAAACCATA+GGG - chr2_2:65090309-65090328 Msa0264930:intron 20.0%
!!! AATTCCAAAATTATCCTTTT+TGG + chr2_2:65090338-65090357 None:intergenic 20.0%
!! AAGTGAAAAGATTAAATGAA+AGG - chr2_2:65091210-65091229 Msa0264930:intron 20.0%
!!! ATTTTGCCAGATAAATATTT+TGG - chr2_2:65091623-65091642 Msa0264930:intron 20.0%
!! GAATAAGAAAATTCTATCAT+GGG + chr2_2:65092271-65092290 None:intergenic 20.0%
!! CAAATTTACAAAATTAACCA+TGG + chr2_2:65092293-65092312 None:intergenic 20.0%
! ATGGTTATTACTGAGTTATA+AGG + chr2_2:65089308-65089327 None:intergenic 25.0%
! AATCTTTAGGTAAAGCTTAA+TGG + chr2_2:65089429-65089448 None:intergenic 25.0%
!!! TTTAAGTTGACTGATCTTTA+TGG - chr2_2:65089506-65089525 Msa0264930:CDS 25.0%
! ATGCTAACTTAACTAGTAAT+CGG - chr2_2:65089607-65089626 Msa0264930:CDS 25.0%
! CTCTATAAATTAATAACGTC+GGG - chr2_2:65089809-65089828 Msa0264930:intron 25.0%
! ACTGTACATACCAAATAAAA+AGG - chr2_2:65089916-65089935 Msa0264930:intron 25.0%
!!! GACTAATTTGCCTTTTTATT+TGG + chr2_2:65089929-65089948 None:intergenic 25.0%
!! GTTTCCAAAAAGGATAATTT+TGG - chr2_2:65090331-65090350 Msa0264930:intron 25.0%
! AAAGAGTGAAAAAAGAGAAA+GGG + chr2_2:65091129-65091148 None:intergenic 25.0%
! GATGGAAATAAAAAACCAAA+AGG - chr2_2:65091236-65091255 Msa0264930:intron 25.0%
! AAAAAACTATGCCCATTTAA+GGG + chr2_2:65091262-65091281 None:intergenic 25.0%
! TAAAAAACTATGCCCATTTA+AGG + chr2_2:65091263-65091282 None:intergenic 25.0%
! TTTACAATGAAAAATCATCG+AGG - chr2_2:65091286-65091305 Msa0264930:intron 25.0%
! CTGAAACCATTAGAATTTAA+AGG - chr2_2:65091314-65091333 Msa0264930:intron 25.0%
! TGAGATCCTTTAAATTCTAA+TGG + chr2_2:65091323-65091342 None:intergenic 25.0%
! GATATAAACATTGAAGTCTT+TGG + chr2_2:65091431-65091450 None:intergenic 25.0%
!!! TCCATTTTAATTTATCTTCG+AGG - chr2_2:65091465-65091484 Msa0264930:intron 25.0%
! ACCTCGAAGATAAATTAAAA+TGG + chr2_2:65091469-65091488 None:intergenic 25.0%
! AATCCATACACATGAAAAAT+AGG - chr2_2:65091497-65091516 Msa0264930:intron 25.0%
!!! TTACCTATTTTTCATGTGTA+TGG + chr2_2:65091503-65091522 None:intergenic 25.0%
! AAAATAGGTAAAATTACTCC+CGG - chr2_2:65091512-65091531 Msa0264930:intron 25.0%
! AATTCATGTTACATGTCTTT+GGG - chr2_2:65091684-65091703 Msa0264930:intron 25.0%
! AAAACAAATATGTAAGACGT+GGG + chr2_2:65091738-65091757 None:intergenic 25.0%
! AAAAACAAATATGTAAGACG+TGG + chr2_2:65091739-65091758 None:intergenic 25.0%
! CAATGGAATTCAATATTCAT+TGG - chr2_2:65092112-65092131 Msa0264930:intron 25.0%
! ATAGCATTAATTCACAAGAA+TGG + chr2_2:65092211-65092230 None:intergenic 25.0%
! GGAATAAGAAAATTCTATCA+TGG + chr2_2:65092272-65092291 None:intergenic 25.0%
!! GATAGAATTTTCTTATTCCA+TGG - chr2_2:65092273-65092292 Msa0264930:five_prime_UTR 25.0%
ATAACTCAGTAATAACCATC+TGG - chr2_2:65089309-65089328 Msa0264930:three_prime_UTR 30.0%
! GATTTTGTGCAAAGTCTTTT+TGG - chr2_2:65089577-65089596 Msa0264930:CDS 30.0%
TTCTTATAAGAAATTAGGGC+AGG - chr2_2:65089647-65089666 Msa0264930:intron 30.0%
TCTTATAAGAAATTAGGGCA+GGG - chr2_2:65089648-65089667 Msa0264930:intron 30.0%
!!! ATCGGTTTTATTTGTTGAAG+TGG - chr2_2:65089687-65089706 Msa0264930:intron 30.0%
!!! GTTTTATTTGTTGAAGTGGA+GGG - chr2_2:65089691-65089710 Msa0264930:intron 30.0%
!! ATTAGCAACTTTGACTTGTA+TGG - chr2_2:65089754-65089773 Msa0264930:intron 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr2_2:65090047-65090066 Msa0264930:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr2_2:65090149-65090168 None:intergenic 30.0%
AATATGACTCAAGATTCTTC+TGG - chr2_2:65090633-65090652 Msa0264930:CDS 30.0%
ATGGTGAGGAAATTAAATTC+TGG - chr2_2:65090948-65090967 Msa0264930:intron 30.0%
GGAAATTAAATTCTGGTCTA+TGG - chr2_2:65090955-65090974 Msa0264930:intron 30.0%
!! TTTCTAGAACTGCAAATAAC+TGG + chr2_2:65091080-65091099 None:intergenic 30.0%
AAGAGTGAAAAAAGAGAAAG+GGG + chr2_2:65091128-65091147 None:intergenic 30.0%
GAAAGAGTGAAAAAAGAGAA+AGG + chr2_2:65091130-65091149 None:intergenic 30.0%
TGAAACATAGTAAAACAGTG+TGG - chr2_2:65091175-65091194 Msa0264930:intron 30.0%
AGATTAAATGAAAGGAGAGA+TGG - chr2_2:65091218-65091237 Msa0264930:intron 30.0%
AAATAGGTAAAATTACTCCC+GGG - chr2_2:65091513-65091532 Msa0264930:intron 30.0%
CTGTTGCCAAAATATTTATC+TGG + chr2_2:65091632-65091651 None:intergenic 30.0%
CAATTCATGTTACATGTCTT+TGG - chr2_2:65091683-65091702 Msa0264930:intron 30.0%
AAACAAATATGTAAGACGTG+GGG + chr2_2:65091737-65091756 None:intergenic 30.0%
! TTTTTATGCAATTTCCAGAG+TGG - chr2_2:65091754-65091773 Msa0264930:intron 30.0%
TGTACTCATATAACAAGTCA+AGG + chr2_2:65091852-65091871 None:intergenic 30.0%
CTTTATCAGTGAATGAATGA+TGG - chr2_2:65091992-65092011 Msa0264930:intron 30.0%
!! GTTCAGTTTGTTAAGTTCAA+TGG - chr2_2:65092095-65092114 Msa0264930:intron 30.0%
TACAATAAGCTGCTGAAATG+TGG - chr2_2:65089147-65089166 Msa0264930:three_prime_UTR 35.0%
TCTTTCTTCTATGTTTGAGC+TGG - chr2_2:65089253-65089272 Msa0264930:three_prime_UTR 35.0%
CTTTCTTCTATGTTTGAGCT+GGG - chr2_2:65089254-65089273 Msa0264930:three_prime_UTR 35.0%
! GTAATAACCATCTGGAATTC+TGG - chr2_2:65089317-65089336 Msa0264930:three_prime_UTR 35.0%
TTTGCACAAAATCAAAGCGA+AGG + chr2_2:65089570-65089589 None:intergenic 35.0%
CTTATAAGAAATTAGGGCAG+GGG - chr2_2:65089649-65089668 Msa0264930:intron 35.0%
!!! GGTTTTATTTGTTGAAGTGG+AGG - chr2_2:65089690-65089709 Msa0264930:intron 35.0%
CAAGTCAAAGTTGCTAATAC+AGG + chr2_2:65089752-65089771 None:intergenic 35.0%
TAAATTAATAACGTCGGGAC+TGG - chr2_2:65089814-65089833 Msa0264930:intron 35.0%
CTAATTTACGTTGAGTCTCA+AGG + chr2_2:65089981-65090000 None:intergenic 35.0%
TTGGGGCCGAAAATTATAAA+GGG - chr2_2:65090140-65090159 Msa0264930:intron 35.0%
AAACCATAGGGTTTCCAAAA+AGG - chr2_2:65090321-65090340 Msa0264930:intron 35.0%
!! TATCCTTTTTGGAAACCCTA+TGG + chr2_2:65090327-65090346 None:intergenic 35.0%
!!! CAAATTTTTTGTTGGTGCAG+TGG - chr2_2:65090473-65090492 Msa0264930:CDS 35.0%
GCATTAGCAAATGCTACTAT+TGG - chr2_2:65090528-65090547 Msa0264930:CDS 35.0%
CTCAATAGTTCCTGTAACAT+CGG - chr2_2:65090671-65090690 Msa0264930:CDS 35.0%
ACAATTGATGAACCCTACAT+CGG - chr2_2:65090702-65090721 Msa0264930:CDS 35.0%
AATTCATATGCTACACGTGT+TGG - chr2_2:65090765-65090784 Msa0264930:exon 35.0%
TAAGTAAGCTCTCAAGATCA+AGG - chr2_2:65090802-65090821 Msa0264930:five_prime_UTR 35.0%
! GCTCTAGTTTGTAACAAAGA+AGG - chr2_2:65090849-65090868 Msa0264930:five_prime_UTR 35.0%
GGAAAAGATTGTAAGGCAAA+GGG - chr2_2:65090893-65090912 Msa0264930:five_prime_UTR 35.0%
CTTCGTTTATGAGCAATATC+CGG - chr2_2:65091040-65091059 Msa0264930:intron 35.0%
!! TGCAGTTCTAGAAAAGTGTA+TGG - chr2_2:65091086-65091105 Msa0264930:intron 35.0%
! AGAAAAGTGTATGGTCTGTT+TGG - chr2_2:65091095-65091114 Msa0264930:intron 35.0%
AAAACCAAAAGGCCCTTAAA+TGG - chr2_2:65091247-65091266 Msa0264930:intron 35.0%
AAACCAAAAGGCCCTTAAAT+GGG - chr2_2:65091248-65091267 Msa0264930:intron 35.0%
AATAGGTAAAATTACTCCCG+GGG - chr2_2:65091514-65091533 Msa0264930:intron 35.0%
ATGCACTTAACTTAGAGTGT+TGG - chr2_2:65091541-65091560 Msa0264930:intron 35.0%
!! GAAACTCGAAGTATCGATTT+GGG + chr2_2:65091596-65091615 None:intergenic 35.0%
!! AGAAACTCGAAGTATCGATT+TGG + chr2_2:65091597-65091616 None:intergenic 35.0%
! AAATCGATACTTCGAGTTTC+TGG - chr2_2:65091596-65091615 Msa0264930:intron 35.0%
AACAAATATGTAAGACGTGG+GGG + chr2_2:65091736-65091755 None:intergenic 35.0%
! CAAGTCAAGGTTCCTTTTAT+AGG + chr2_2:65091839-65091858 None:intergenic 35.0%
! CTTGTTATATGAGTACATCG+AGG - chr2_2:65091855-65091874 Msa0264930:intron 35.0%
ATGGAAGCTAAAGAACAAGA+GGG - chr2_2:65091934-65091953 Msa0264930:intron 35.0%
AAAGCTTAATGGCATCCAGA+TGG + chr2_2:65089418-65089437 None:intergenic 40.0%
ACTACTGTGTTCACATGCAT+TGG - chr2_2:65090003-65090022 Msa0264930:intron 40.0%
CTTGGGGCCGAAAATTATAA+AGG - chr2_2:65090139-65090158 Msa0264930:intron 40.0%
! TTTTTACATTGGCCCAAGTC+AGG - chr2_2:65090217-65090236 Msa0264930:intron 40.0%
AGCAAATGCTACTATTGGAG+AGG - chr2_2:65090533-65090552 Msa0264930:CDS 40.0%
TTTCGATCCAACTGATGAAC+AGG - chr2_2:65090599-65090618 Msa0264930:CDS 40.0%
TCTTGATCCTGTTCATCAGT+TGG + chr2_2:65090609-65090628 None:intergenic 40.0%
CAGGAACTATTGAGGTGATT+TGG + chr2_2:65090665-65090684 None:intergenic 40.0%
CGATGTTACAGGAACTATTG+AGG + chr2_2:65090673-65090692 None:intergenic 40.0%
GTTCTCATAACCGATGTTAC+AGG + chr2_2:65090684-65090703 None:intergenic 40.0%
AAATGCATGTGCTTCAGCTT+CGG + chr2_2:65090742-65090761 None:intergenic 40.0%
ACAAGCGGGAAAAGATTGTA+AGG - chr2_2:65090886-65090905 Msa0264930:five_prime_UTR 40.0%
GGGAAAAGATTGTAAGGCAA+AGG - chr2_2:65090892-65090911 Msa0264930:five_prime_UTR 40.0%
ACTGGTAGAACATGACTAAC+CGG + chr2_2:65091062-65091081 None:intergenic 40.0%
ATAGGTAAAATTACTCCCGG+GGG - chr2_2:65091515-65091534 Msa0264930:intron 40.0%
ACAAATATGTAAGACGTGGG+GGG + chr2_2:65091735-65091754 None:intergenic 40.0%
TCGAGAACTAACTCAACAGT+TGG - chr2_2:65091789-65091808 Msa0264930:intron 40.0%
AGCGAGCTGAAACCTATAAA+AGG - chr2_2:65091824-65091843 Msa0264930:intron 40.0%
GATGGAAGCTAAAGAACAAG+AGG - chr2_2:65091933-65091952 Msa0264930:intron 40.0%
ACAAGAGGGTCAGTTTCAAT+TGG - chr2_2:65091948-65091967 Msa0264930:intron 40.0%
GGACTGAGTTACAAGTTCAA+TGG + chr2_2:65092049-65092068 None:intergenic 40.0%
TTGTAACTCAGTCCAGCTTT+AGG - chr2_2:65092055-65092074 Msa0264930:intron 40.0%
! GACTAGTTCAGTCAATGTAC+AGG - chr2_2:65092172-65092191 Msa0264930:intron 40.0%
! ATTCACAAGAATGGACTCAG+AGG + chr2_2:65092202-65092221 None:intergenic 40.0%
AATTTGTCCGGTCCTGACTT+GGG + chr2_2:65090232-65090251 None:intergenic 45.0%
AAATTTGTCCGGTCCTGACT+TGG + chr2_2:65090233-65090252 None:intergenic 45.0%
! GAGATTGGTGACTCCAGTAA+TGG - chr2_2:65090501-65090520 Msa0264930:CDS 45.0%
TGCTAATGCCTCACCATTAC+TGG + chr2_2:65090517-65090536 None:intergenic 45.0%
! GACTCAAGATTCTTCTGGAG+TGG - chr2_2:65090638-65090657 Msa0264930:CDS 45.0%
!! AGGCGTGATGGATCTGTTAT+TGG - chr2_2:65090822-65090841 Msa0264930:five_prime_UTR 45.0%
!! GGCGTGATGGATCTGTTATT+GGG - chr2_2:65090823-65090842 Msa0264930:five_prime_UTR 45.0%
!! GTGATGGATCTGTTATTGGG+CGG - chr2_2:65090826-65090845 Msa0264930:five_prime_UTR 45.0%
! TGATGGATCTGTTATTGGGC+GGG - chr2_2:65090827-65090846 Msa0264930:five_prime_UTR 45.0%
GTTTCAGAATGCCTGACAAG+CGG - chr2_2:65090871-65090890 Msa0264930:five_prime_UTR 45.0%
TTTCAGAATGCCTGACAAGC+GGG - chr2_2:65090872-65090891 Msa0264930:five_prime_UTR 45.0%
! ACAATCTTTTCCCGCTTGTC+AGG + chr2_2:65090885-65090904 None:intergenic 45.0%
TAAGGCAAAGGGCAGAAACA+AGG - chr2_2:65090904-65090923 Msa0264930:five_prime_UTR 45.0%
AAGGCAAAGGGCAGAAACAA+GGG - chr2_2:65090905-65090924 Msa0264930:five_prime_UTR 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG - chr2_2:65090917-65090936 Msa0264930:intron 45.0%
TGGTTGCAGGGCAATGATTA+TGG - chr2_2:65090929-65090948 Msa0264930:intron 45.0%
! ATGCCCATTTAAGGGCCTTT+TGG + chr2_2:65091254-65091273 None:intergenic 45.0%
AAGTTAAGTGCATAGACCCC+CGG + chr2_2:65091534-65091553 None:intergenic 45.0%
AAATATGTAAGACGTGGGGG+GGG + chr2_2:65091733-65091752 None:intergenic 45.0%
CAAATATGTAAGACGTGGGG+GGG + chr2_2:65091734-65091753 None:intergenic 45.0%
! GCACATAGTAGAGAGTGTGA+AGG - chr2_2:65091909-65091928 Msa0264930:intron 45.0%
! AGTAGAGAGTGTGAAGGAGA+TGG - chr2_2:65091915-65091934 Msa0264930:intron 45.0%
AACTCACTTGCACCTAAAGC+TGG + chr2_2:65092070-65092089 None:intergenic 45.0%
!!! TAATAAGATAATAATTTTTT+CGG + chr2_2:65090170-65090189 None:intergenic 5.0%
ACGGCATCCAGAATTCCAGA+TGG + chr2_2:65089327-65089346 None:intergenic 50.0%
CCGAGTGATACTCTACAGAG+CGG + chr2_2:65090436-65090455 None:intergenic 50.0%
! CCGCTCTGTAGAGTATCACT+CGG - chr2_2:65090433-65090452 Msa0264930:CDS 50.0%
GGTGCAGTGGAGATTGAGAT+TGG - chr2_2:65090486-65090505 Msa0264930:CDS 50.0%
TGGTGACTCCAGTAATGGTG+AGG - chr2_2:65090506-65090525 Msa0264930:CDS 50.0%
ACAAACTCCTGGCCGATGTA+GGG + chr2_2:65090717-65090736 None:intergenic 50.0%
TACAAACTCCTGGCCGATGT+AGG + chr2_2:65090718-65090737 None:intergenic 50.0%
CAGCTTCGGATACAAACTCC+TGG + chr2_2:65090728-65090747 None:intergenic 50.0%
CTCTCAAGATCAAGGCGTGA+TGG - chr2_2:65090810-65090829 Msa0264930:five_prime_UTR 50.0%
CAAAGGGCAGAAACAAGGGT+TGG - chr2_2:65090909-65090928 Msa0264930:intron 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG - chr2_2:65090916-65090935 Msa0264930:intron 50.0%
GCAGGGCAATGATTATGGTG+AGG - chr2_2:65090934-65090953 Msa0264930:intron 50.0%
AGTTAAGTGCATAGACCCCC+GGG + chr2_2:65091533-65091552 None:intergenic 50.0%
AATATGTAAGACGTGGGGGG+GGG + chr2_2:65091732-65091751 None:intergenic 50.0%
ACATTGGCCCAAGTCAGGAC+CGG - chr2_2:65090222-65090241 Msa0264930:intron 55.0%
TGATGAACCCTACATCGGCC+AGG - chr2_2:65090707-65090726 Msa0264930:CDS 55.0%
CACACACATCCTCTGACACC+TGG - chr2_2:65091002-65091021 Msa0264930:intron 55.0%
CATCCTCTGACACCTGGAAG+AGG - chr2_2:65091008-65091027 Msa0264930:intron 55.0%
TGACACCTGGAAGAGGCAGA+AGG - chr2_2:65091015-65091034 Msa0264930:intron 55.0%
GACACCTGGAAGAGGCAGAA+GGG - chr2_2:65091016-65091035 Msa0264930:intron 55.0%
AAGTCCCTTCTGCCTCTTCC+AGG + chr2_2:65091023-65091042 None:intergenic 55.0%
ATATGTAAGACGTGGGGGGG+GGG + chr2_2:65091731-65091750 None:intergenic 55.0%
GAACTCTGTCGTGTCCACTC+TGG + chr2_2:65091771-65091790 None:intergenic 55.0%
CTGCCTCTTCCAGGTGTCAG+AGG + chr2_2:65091014-65091033 None:intergenic 60.0%
TATGTAAGACGTGGGGGGGG+GGG + chr2_2:65091730-65091749 None:intergenic 60.0%
GGGGGGGGGGAACTGAAAAG+GGG + chr2_2:65091711-65091730 None:intergenic 65.0%
GGGGGGGGGGGAACTGAAAA+GGG + chr2_2:65091712-65091731 None:intergenic 65.0%
ATGTAAGACGTGGGGGGGGG+GGG + chr2_2:65091729-65091748 None:intergenic 65.0%
GGGGGGGGGGGGAACTGAAA+AGG + chr2_2:65091713-65091732 None:intergenic 70.0%
TGTAAGACGTGGGGGGGGGG+GGG + chr2_2:65091728-65091747 None:intergenic 70.0%
TAAGACGTGGGGGGGGGGGG+GGG + chr2_2:65091726-65091745 None:intergenic 75.0%
GTAAGACGTGGGGGGGGGGG+GGG + chr2_2:65091727-65091746 None:intergenic 75.0%
! AAGACGTGGGGGGGGGGGGG+GGG + chr2_2:65091725-65091744 None:intergenic 80.0%
! AGACGTGGGGGGGGGGGGGG+GGG + chr2_2:65091724-65091743 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65089096 65092323 65089096 ID=Msa0264930;Name=Msa0264930
chr2_2 mRNA 65089096 65092323 65089096 ID=Msa0264930-mRNA-1;Parent=Msa0264930;Name=Msa0264930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=265|1|1|1|0.5|0.66|3|342|211
chr2_2 exon 65089096 65089647 65089096 ID=Msa0264930-mRNA-1:exon:20444;Parent=Msa0264930-mRNA-1
chr2_2 exon 65090358 65090926 65090358 ID=Msa0264930-mRNA-1:exon:20443;Parent=Msa0264930-mRNA-1
chr2_2 exon 65092202 65092323 65092202 ID=Msa0264930-mRNA-1:exon:20442;Parent=Msa0264930-mRNA-1
chr2_2 five_prime_UTR 65092202 65092323 65092202 ID=Msa0264930-mRNA-1:five_prime_utr;Parent=Msa0264930-mRNA-1
chr2_2 five_prime_UTR 65090784 65090926 65090784 ID=Msa0264930-mRNA-1:five_prime_utr;Parent=Msa0264930-mRNA-1
chr2_2 CDS 65090358 65090783 65090358 ID=Msa0264930-mRNA-1:cds;Parent=Msa0264930-mRNA-1
chr2_2 CDS 65089438 65089647 65089438 ID=Msa0264930-mRNA-1:cds;Parent=Msa0264930-mRNA-1
chr2_2 three_prime_UTR 65089096 65089437 65089096 ID=Msa0264930-mRNA-1:three_prime_utr;Parent=Msa0264930-mRNA-1
Gene Sequence

>Msa0264930

ATGACTCAAGATTCTTCTGGAGTGGACCAAATCACCTCAATAGTTCCTGTAACATCGGTTATGAGAACAATTGATGAACCCTACATCGGCCAGGAGTTTGTATCCGAAGCTGAAGCACATGCATTTTATAATTCATATGCTACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGATCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTAGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAAGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGAGTGGACACGACAGAGTTCGAGAACTAACTCAACAGTTGGCTATAGAGAAAAAGCGAGCTGAAACCTATAAAAGGAACCTTGACTTGTTATATGAGTACATCGAGGAGCATAATGAAGCTGTTTCAAAGAAGATACAGCACATAGTAGAGAGTGTGAAGGAGATGGAAGCTAAAGAACAAGAGGGTCAGTTTCAATTGGCTGTTATCTAG

Protein sequence

>Msa0264930

MTQDSSGVDQITSIVPVTSVMRTIDEPYIGQEFVSEAEAHAFYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELTQQLAIEKKRAETYKRNLDLLYEYIEEHNEAVSKKIQHIVESVKEMEAKEQEGQFQLAVI*