Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359560 | XP_013459866.1 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.69e-68 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359560 | sp|Q9FLP6|SUMO2_ARATH | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.37e-56 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359560 | I3SU86 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 1.29e-68 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0359560 | 0.816171 | 6.343639e-52 | -8.615850e-47 |
| Msa0004920 | Msa0359560 | 0.814395 | 1.574806e-51 | -8.615850e-47 |
| Msa0008090 | Msa0359560 | 0.812971 | 3.241542e-51 | -8.615850e-47 |
| Msa0008410 | Msa0359560 | 0.803016 | 4.262806e-49 | -8.615850e-47 |
| Msa0038870 | Msa0359560 | 0.805972 | 1.031212e-49 | -8.615850e-47 |
| Msa0050760 | Msa0359560 | 0.802500 | 5.448644e-49 | -8.615850e-47 |
| Msa0051770 | Msa0359560 | 0.810407 | 1.170678e-50 | -8.615850e-47 |
| Msa0056030 | Msa0359560 | 0.830527 | 2.792391e-55 | -8.615850e-47 |
| Msa0057140 | Msa0359560 | 0.808404 | 3.149460e-50 | -8.615850e-47 |
| Msa0073480 | Msa0359560 | 0.811473 | 6.879736e-51 | -8.615850e-47 |
| Msa0084780 | Msa0359560 | 0.801193 | 1.010531e-48 | -8.615850e-47 |
| Msa0086420 | Msa0359560 | 0.812884 | 3.386842e-51 | -8.615850e-47 |
| Msa0090360 | Msa0359560 | 0.807809 | 4.215267e-50 | -8.615850e-47 |
| Msa0094920 | Msa0359560 | 0.811046 | 8.514355e-51 | -8.615850e-47 |
| Msa0099510 | Msa0359560 | 0.815670 | 8.206018e-52 | -8.615850e-47 |
| Msa0109690 | Msa0359560 | 0.806597 | 7.615967e-50 | -8.615850e-47 |
| Msa0137840 | Msa0359560 | 0.817246 | 3.641663e-52 | -8.615850e-47 |
| Msa0140110 | Msa0359560 | 0.819779 | 9.707022e-53 | -8.615850e-47 |
| Msa0148120 | Msa0359560 | 0.836483 | 9.113660e-57 | -8.615850e-47 |
| Msa0183460 | Msa0359560 | 0.812746 | 3.629590e-51 | -8.615850e-47 |
| Msa0184040 | Msa0359560 | 0.812147 | 4.907390e-51 | -8.615850e-47 |
| Msa0184780 | Msa0359560 | 0.803837 | 2.880532e-49 | -8.615850e-47 |
| Msa0189520 | Msa0359560 | 0.809211 | 2.116393e-50 | -8.615850e-47 |
| Msa0191050 | Msa0359560 | 0.856246 | 3.663688e-62 | -8.615850e-47 |
| Msa0211860 | Msa0359560 | 0.800401 | 1.466252e-48 | -8.615850e-47 |
| Msa0217680 | Msa0359560 | 0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa0220580 | Msa0359560 | 0.803808 | 2.921090e-49 | -8.615850e-47 |
| Msa0229490 | Msa0359560 | -0.815928 | 7.190188e-52 | -8.615850e-47 |
| Msa0233350 | Msa0359560 | 0.860572 | 1.881468e-63 | -8.615850e-47 |
| Msa0236270 | Msa0359560 | 0.815089 | 1.105195e-51 | -8.615850e-47 |
| Msa0249200 | Msa0359560 | 0.806518 | 7.911982e-50 | -8.615850e-47 |
| Msa0260210 | Msa0359560 | 0.808585 | 2.880896e-50 | -8.615850e-47 |
| Msa0264930 | Msa0359560 | 0.804785 | 1.828079e-49 | -8.615850e-47 |
| Msa0282250 | Msa0359560 | 0.817430 | 3.310641e-52 | -8.615850e-47 |
| Msa0291500 | Msa0359560 | 0.810783 | 9.708145e-51 | -8.615850e-47 |
| Msa0304290 | Msa0359560 | 0.816653 | 4.948804e-52 | -8.615850e-47 |
| Msa0304330 | Msa0359560 | 0.819498 | 1.125134e-52 | -8.615850e-47 |
| Msa0305890 | Msa0359560 | 0.805901 | 1.067032e-49 | -8.615850e-47 |
| Msa0306210 | Msa0359560 | -0.804937 | 1.699868e-49 | -8.615850e-47 |
| Msa0314720 | Msa0359560 | 0.813395 | 2.615774e-51 | -8.615850e-47 |
| Msa0327410 | Msa0359560 | 0.801510 | 8.704904e-49 | -8.615850e-47 |
| Msa0340810 | Msa0359560 | 0.805331 | 1.405770e-49 | -8.615850e-47 |
| Msa0347610 | Msa0359560 | 0.813365 | 2.656085e-51 | -8.615850e-47 |
| Msa0359560 | Msa0366890 | 0.801937 | 7.114563e-49 | -8.615850e-47 |
| Msa0359560 | Msa0372670 | 0.800860 | 1.182252e-48 | -8.615850e-47 |
| Msa0359560 | Msa0376300 | 0.807458 | 5.005465e-50 | -8.615850e-47 |
| Msa0359560 | Msa0376690 | 0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0359560 | Msa0379640 | 0.801146 | 1.033448e-48 | -8.615850e-47 |
| Msa0359560 | Msa0385490 | 0.811403 | 7.125878e-51 | -8.615850e-47 |
| Msa0359560 | Msa0392940 | 0.800220 | 1.596350e-48 | -8.615850e-47 |
| Msa0359560 | Msa0393710 | 0.805079 | 1.587039e-49 | -8.615850e-47 |
| Msa0359560 | Msa0394340 | 0.831024 | 2.110387e-55 | -8.615850e-47 |
| Msa0359560 | Msa0415430 | 0.820914 | 5.331920e-53 | -8.615850e-47 |
| Msa0359560 | Msa0416400 | 0.801643 | 8.173176e-49 | -8.615850e-47 |
| Msa0359560 | Msa0419520 | 0.844171 | 8.916811e-59 | -8.615850e-47 |
| Msa0359560 | Msa0442200 | 0.829908 | 3.956274e-55 | -8.615850e-47 |
| Msa0359560 | Msa0453350 | 0.827320 | 1.670074e-54 | -8.615850e-47 |
| Msa0359560 | Msa0457510 | 0.803513 | 3.362789e-49 | -8.615850e-47 |
| Msa0359560 | Msa0464900 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0359560 | Msa0465550 | 0.858933 | 5.860197e-63 | -8.615850e-47 |
| Msa0359560 | Msa0466250 | 0.820166 | 7.918314e-53 | -8.615850e-47 |
| Msa0359560 | Msa0471440 | 0.803813 | 2.914835e-49 | -8.615850e-47 |
| Msa0359560 | Msa0477080 | 0.818467 | 1.930786e-52 | -8.615850e-47 |
| Msa0359560 | Msa0479970 | 0.810518 | 1.107435e-50 | -8.615850e-47 |
| Msa0359560 | Msa0481810 | 0.812182 | 4.821233e-51 | -8.615850e-47 |
| Msa0359560 | Msa0485850 | 0.821600 | 3.703361e-53 | -8.615850e-47 |
| Msa0359560 | Msa0489610 | 0.844895 | 5.692842e-59 | -8.615850e-47 |
| Msa0359560 | Msa0511490 | 0.839477 | 1.547610e-57 | -8.615850e-47 |
| Msa0359560 | Msa0546570 | 0.803205 | 3.895991e-49 | -8.615850e-47 |
| Msa0359560 | Msa0552810 | 0.800936 | 1.140518e-48 | -8.615850e-47 |
| Msa0359560 | Msa0553050 | 0.805866 | 1.085283e-49 | -8.615850e-47 |
| Msa0359560 | Msa0555200 | 0.819205 | 1.312437e-52 | -8.615850e-47 |
| Msa0359560 | Msa0565620 | -0.833708 | 4.567368e-56 | -8.615850e-47 |
| Msa0359560 | Msa0589190 | 0.835655 | 1.478394e-56 | -8.615850e-47 |
| Msa0359560 | Msa0600610 | 0.800638 | 1.312145e-48 | -8.615850e-47 |
| Msa0359560 | Msa0608710 | 0.834044 | 3.763118e-56 | -8.615850e-47 |
| Msa0359560 | Msa0609410 | -0.807322 | 5.349191e-50 | -8.615850e-47 |
| Msa0359560 | Msa0620330 | 0.815526 | 8.836571e-52 | -8.615850e-47 |
| Msa0359560 | Msa0641190 | 0.805314 | 1.416987e-49 | -8.615850e-47 |
| Msa0359560 | Msa0649350 | 0.802152 | 6.424092e-49 | -8.615850e-47 |
| Msa0359560 | Msa0657460 | -0.802406 | 5.695047e-49 | -8.615850e-47 |
| Msa0359560 | Msa0661090 | 0.802778 | 4.773214e-49 | -8.615850e-47 |
| Msa0359560 | Msa0689500 | 0.813326 | 2.709063e-51 | -8.615850e-47 |
| Msa0359560 | Msa0692940 | 0.800896 | 1.162138e-48 | -8.615850e-47 |
| Msa0359560 | Msa0694840 | 0.815759 | 7.841169e-52 | -8.615850e-47 |
| Msa0359560 | Msa0697940 | 0.810143 | 1.334437e-50 | -8.615850e-47 |
| Msa0359560 | Msa0709500 | 0.809075 | 2.264031e-50 | -8.615850e-47 |
| Msa0359560 | Msa0718740 | 0.807210 | 5.649140e-50 | -8.615850e-47 |
| Msa0359560 | Msa0720820 | 0.815609 | 8.468342e-52 | -8.615850e-47 |
| Msa0359560 | Msa0743260 | 0.807110 | 5.931847e-50 | -8.615850e-47 |
| Msa0359560 | Msa0750430 | 0.824059 | 9.910513e-54 | -8.615850e-47 |
| Msa0359560 | Msa0761940 | 0.805781 | 1.131225e-49 | -8.615850e-47 |
| Msa0359560 | Msa0790850 | 0.804486 | 2.110629e-49 | -8.615850e-47 |
| Msa0359560 | Msa0791820 | 0.819895 | 9.135468e-53 | -8.615850e-47 |
| Msa0359560 | Msa0793390 | 0.816643 | 4.975749e-52 | -8.615850e-47 |
| Msa0359560 | Msa0841940 | 0.804494 | 2.102798e-49 | -8.615850e-47 |
| Msa0359560 | Msa0842830 | 0.838106 | 3.502174e-57 | -8.615850e-47 |
| Msa0359560 | Msa0844230 | 0.802661 | 5.046082e-49 | -8.615850e-47 |
| Msa0359560 | Msa0869100 | 0.804186 | 2.437750e-49 | -8.615850e-47 |
| Msa0359560 | Msa0869120 | 0.811767 | 5.936607e-51 | -8.615850e-47 |
| Msa0359560 | Msa0874500 | 0.802807 | 4.707616e-49 | -8.615850e-47 |
| Msa0359560 | Msa0888320 | 0.800070 | 1.712384e-48 | -8.615850e-47 |
| Msa0359560 | Msa0899240 | -0.810013 | 1.423133e-50 | -8.615850e-47 |
| Msa0359560 | Msa0930140 | 0.817720 | 2.848509e-52 | -8.615850e-47 |
| Msa0359560 | Msa0933290 | 0.809599 | 1.747225e-50 | -8.615850e-47 |
| Msa0359560 | Msa0933310 | 0.820842 | 5.538592e-53 | -8.615850e-47 |
| Msa0359560 | Msa0942550 | -0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0359560 | Msa0942560 | -0.822462 | 2.338694e-53 | -8.615850e-47 |
| Msa0359560 | Msa0971020 | 0.808106 | 3.644495e-50 | -8.615850e-47 |
| Msa0359560 | Msa0971090 | 0.810206 | 1.293372e-50 | -8.615850e-47 |
| Msa0359560 | Msa1012830 | 0.802302 | 5.985189e-49 | -8.615850e-47 |
| Msa0359560 | Msa1031770 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0359560 | Msa1040890 | 0.806330 | 8.670554e-50 | -8.615850e-47 |
| Msa0359560 | Msa1046020 | 0.821889 | 3.176021e-53 | -8.615850e-47 |
| Msa0359560 | Msa1046060 | 0.817891 | 2.605877e-52 | -8.615850e-47 |
| Msa0359560 | Msa1063510 | 0.805041 | 1.616397e-49 | -8.615850e-47 |
| Msa0359560 | Msa1072460 | -0.806454 | 8.161325e-50 | -8.615850e-47 |
| Msa0359560 | Msa1089840 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0359560 | Msa1091100 | 0.822161 | 2.746927e-53 | -8.615850e-47 |
| Msa0359560 | Msa1100720 | 0.800353 | 1.499516e-48 | -8.615850e-47 |
| Msa0359560 | Msa1134090 | 0.823517 | 1.327176e-53 | -8.615850e-47 |
| Msa0359560 | Msa1152520 | 0.803661 | 3.133141e-49 | -8.615850e-47 |
| Msa0359560 | Msa1171360 | 0.805444 | 1.331330e-49 | -8.615850e-47 |
| Msa0359560 | Msa1176980 | 0.801406 | 9.139555e-49 | -8.615850e-47 |
| Msa0359560 | Msa1190890 | -0.805147 | 1.536104e-49 | -8.615850e-47 |
| Msa0359560 | Msa1201560 | 0.811883 | 5.602627e-51 | -8.615850e-47 |
| Msa0359560 | Msa1225150 | -0.807332 | 5.322949e-50 | -8.615850e-47 |
| Msa0359560 | Msa1237940 | 0.805343 | 1.397379e-49 | -8.615850e-47 |
| Msa0359560 | Msa1254510 | 0.818902 | 1.538054e-52 | -8.615850e-47 |
| Msa0359560 | Msa1255040 | -0.805529 | 1.277795e-49 | -8.615850e-47 |
| Msa0359560 | Msa1260130 | 0.806290 | 8.836371e-50 | -8.615850e-47 |
| Msa0359560 | Msa1267520 | 0.823574 | 1.287270e-53 | -8.615850e-47 |
| Msa0359560 | Msa1269300 | 0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0359560 | Msa1296830 | 0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa0359560 | Msa1302190 | -0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa0359560 | Msa1304820 | 0.833918 | 4.046456e-56 | -8.615850e-47 |
| Msa0359560 | Msa1305710 | 0.804977 | 1.667162e-49 | -8.615850e-47 |
| Msa0359560 | Msa1306430 | 0.800757 | 1.241037e-48 | -8.615850e-47 |
| Msa0359560 | Msa1335940 | 0.803352 | 3.631645e-49 | -8.615850e-47 |
| Msa0359560 | Msa1340650 | 0.808335 | 3.258440e-50 | -8.615850e-47 |
| Msa0359560 | Msa1342640 | -0.823011 | 1.742463e-53 | -8.615850e-47 |
| Msa0359560 | Msa1342900 | 0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0359560 | Msa1366650 | 0.801103 | 1.054498e-48 | -8.615850e-47 |
| Msa0359560 | Msa1371090 | 0.828141 | 1.060303e-54 | -8.615850e-47 |
| Msa0359560 | Msa1388860 | 0.820874 | 5.446989e-53 | -8.615850e-47 |
| Msa0359560 | Msa1403340 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
| Msa0359560 | Msa1404190 | 0.800787 | 1.223574e-48 | -8.615850e-47 |
| Msa0359560 | Msa1420990 | 0.803426 | 3.505198e-49 | -8.615850e-47 |
| Msa0359560 | Msa1423910 | 0.851465 | 8.721961e-61 | -8.615850e-47 |
| Msa0359560 | Msa1425010 | 0.800858 | 1.183393e-48 | -8.615850e-47 |
| Msa0359560 | Msa1433390 | 0.810052 | 1.395843e-50 | -8.615850e-47 |
| Msa0359560 | Msa1440600 | 0.801078 | 1.066760e-48 | -8.615850e-47 |
| Msa0359560 | Msa1444740 | 0.808816 | 2.572028e-50 | -8.615850e-47 |
| Msa0359560 | Msa1453780 | -0.814733 | 1.325820e-51 | -8.615850e-47 |
| Msa0359560 | Msa1461280 | 0.848947 | 4.429325e-60 | -8.615850e-47 |
| Msa0359560 | Msa1465960 | 0.808096 | 3.663292e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359560 | MtrunA17_Chr3g0099771 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.48e-72 | 209 |
| Msa0359560 | MtrunA17_Chr3g0099761 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 5.23e-72 | 209 |
| Msa0359560 | MtrunA17_Chr8g0337911 | 60.811 | 74 | 29 | 0 | 21 | 94 | 212 | 285 | 1.07e-27 | 103 |
| Msa0359560 | MtrunA17_Chr8g0337911 | 61.972 | 71 | 27 | 0 | 23 | 93 | 291 | 361 | 1.79e-22 | 89.4 |
| Msa0359560 | MtrunA17_Chr8g0337911 | 51.724 | 87 | 38 | 1 | 11 | 93 | 121 | 207 | 1.08e-21 | 87.0 |
| Msa0359560 | MtrunA17_Chr8g0337911 | 46.835 | 79 | 39 | 2 | 23 | 100 | 57 | 133 | 8.21e-16 | 70.9 |
| Msa0359560 | MtrunA17_Chr8g0337921 | 46.237 | 93 | 49 | 1 | 3 | 95 | 64 | 155 | 3.38e-26 | 97.1 |
| Msa0359560 | MtrunA17_Chr8g0337921 | 52.632 | 76 | 36 | 0 | 23 | 98 | 162 | 237 | 1.77e-21 | 84.7 |
| Msa0359560 | MtrunA17_Chr3g0099841 | 45.283 | 53 | 29 | 0 | 29 | 81 | 39 | 91 | 4.07e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359560 | AT5G55160.1 | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.40e-57 | 172 |
| Msa0359560 | AT4G26840.1 | 91.111 | 90 | 8 | 0 | 7 | 96 | 2 | 91 | 1.40e-57 | 172 |
| Msa0359560 | AT5G55160.2 | 80.374 | 107 | 5 | 3 | 5 | 98 | 2 | 105 | 5.12e-54 | 164 |
| Msa0359560 | AT5G55856.1 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.05e-26 | 94.7 |
| Msa0359560 | AT5G55170.1 | 50.562 | 89 | 42 | 1 | 12 | 98 | 5 | 93 | 2.62e-25 | 91.7 |
| Msa0359560 | AT5G55855.2 | 46.512 | 86 | 46 | 0 | 13 | 98 | 5 | 90 | 7.14e-24 | 87.4 |
| Msa0359560 | AT5G48710.3 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0359560 | AT5G48710.2 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0359560 | AT5G48710.1 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.78e-23 | 85.5 |
| Msa0359560 | AT5G55170.3 | 47.191 | 89 | 41 | 2 | 12 | 98 | 5 | 89 | 7.34e-21 | 80.1 |
| Msa0359560 | AT2G32765.1 | 43.421 | 76 | 43 | 0 | 23 | 98 | 28 | 103 | 7.96e-21 | 80.1 |
| Msa0359560 | AT5G48700.1 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 6.84e-18 | 72.8 |
| Msa0359560 | AT5G55170.2 | 47.887 | 71 | 35 | 1 | 12 | 80 | 5 | 75 | 2.25e-17 | 71.2 |
| Msa0359560 | AT5G48710.4 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 3.85e-14 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATGTTTCCTTTGTTAATA+TGG | 0.169926 | 3_1:-47270469 | Msa0359560:three_prime_UTR |
| CGCGTTTGCGTTTGCATAAT+CGG | 0.189456 | 3_1:-47272792 | Msa0359560:five_prime_UTR |
| TGTTGTTTCTGGGCCGGGTT+TGG | 0.225198 | 3_1:+47272888 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+TGG | 0.262343 | 3_1:+47272713 | None:intergenic |
| AACTAATTCTATTCATAATA+TGG | 0.285268 | 3_1:+47270580 | None:intergenic |
| TTCTTGTCTTCCTCAGTGTT+GGG | 0.315048 | 3_1:+47272737 | None:intergenic |
| AATGTTCTGCTCTGTCCTTT+TGG | 0.327149 | 3_1:-47270335 | Msa0359560:three_prime_UTR |
| GTTGTTTCTGGGCCGGGTTT+GGG | 0.332678 | 3_1:+47272889 | None:intergenic |
| CTTCTTGTCTTCCTCAGTGT+TGG | 0.344681 | 3_1:+47272736 | None:intergenic |
| TCTGGGCCGGGTTTGGGCTT+AGG | 0.367948 | 3_1:+47272895 | None:intergenic |
| TTTACAAAGTTCAGCTTCAA+TGG | 0.400039 | 3_1:+47270494 | None:intergenic |
| TTTAATCCCTTTAAGCCAAA+AGG | 0.421714 | 3_1:+47270320 | None:intergenic |
| TTTCAGTTGGAGATGGAAGA+TGG | 0.431884 | 3_1:-47270672 | Msa0359560:intron |
| GCTTGTTCAATAAATCCATA+TGG | 0.445315 | 3_1:-47270396 | Msa0359560:three_prime_UTR |
| TATATCAACCACCACCCATA+TGG | 0.451555 | 3_1:+47270381 | None:intergenic |
| TATCATACAGCTGCTGCAGC+TGG | 0.464158 | 3_1:-47270206 | Msa0359560:three_prime_UTR |
| TGAATATATTTCAACTCTGA+AGG | 0.464186 | 3_1:-47270067 | None:intergenic |
| TCATATTCACGAACCTCATC+GGG | 0.477321 | 3_1:+47270784 | None:intergenic |
| TTAGTTTGTGACTTAGTGCT+AGG | 0.503396 | 3_1:-47270563 | Msa0359560:three_prime_UTR |
| AATTAGTTTAACCTAGGGCC+AGG | 0.504125 | 3_1:-47270266 | Msa0359560:three_prime_UTR |
| GTCATATTCACGAACCTCAT+CGG | 0.504722 | 3_1:+47270783 | None:intergenic |
| CTGTGGAATCACGGCGACGA+TGG | 0.506443 | 3_1:+47272820 | None:intergenic |
| TGTGGAATCACGGCGACGAT+GGG | 0.512141 | 3_1:+47272821 | None:intergenic |
| GAATATATTTCAACTCTGAA+GGG | 0.512596 | 3_1:-47270066 | None:intergenic |
| GAGATTCTGAAGATGTCGTC+AGG | 0.514599 | 3_1:-47272770 | Msa0359560:exon |
| GAAGACAAGAAGCCAGAAGC+AGG | 0.516162 | 3_1:-47272725 | Msa0359560:CDS |
| CAACCTCAAGGTCAAGGGTC+AGG | 0.516757 | 3_1:-47272690 | Msa0359560:intron |
| CAAACGAGTATTACCTTCAC+TGG | 0.525935 | 3_1:+47270425 | None:intergenic |
| TTTGTTAATATGGTTATGAG+TGG | 0.533113 | 3_1:-47270459 | Msa0359560:three_prime_UTR |
| TGTCCTGTTTCAGTTGGAGA+TGG | 0.533449 | 3_1:-47270679 | Msa0359560:intron |
| ATTGAAGCTGAACTTTGTAA+AGG | 0.538782 | 3_1:-47270492 | Msa0359560:three_prime_UTR |
| GAATAGAATTAGTTTAACCT+AGG | 0.543650 | 3_1:-47270272 | Msa0359560:three_prime_UTR |
| TTCAGTTGGAGATGGAAGAT+GGG | 0.544422 | 3_1:-47270671 | Msa0359560:intron |
| ATCAGGCCTAAGCCCAAACC+CGG | 0.555888 | 3_1:-47272901 | Msa0359560:five_prime_UTR |
| GACGCCATGCTTCATCAGAC+AGG | 0.556706 | 3_1:-47270639 | Msa0359560:CDS |
| GCTGCAGCTGGACTTTGTAA+AGG | 0.557140 | 3_1:-47270194 | Msa0359560:three_prime_UTR |
| ATGCATTATATGCATTAGCC+TGG | 0.557360 | 3_1:+47270248 | None:intergenic |
| AATAGAATTAGTTTAACCTA+GGG | 0.559854 | 3_1:-47270271 | Msa0359560:three_prime_UTR |
| ATATGCATTAGCCTGGCCCT+AGG | 0.565187 | 3_1:+47270255 | None:intergenic |
| TTTGTTAATACGATTATGAG+TGG | 0.575035 | 3_1:-47270161 | Msa0359560:three_prime_UTR |
| GAACCTGACCCTTGACCTTG+AGG | 0.575367 | 3_1:+47272687 | None:intergenic |
| CCCATCAAAGAGAAAAGCAA+TGG | 0.577412 | 3_1:+47270831 | None:intergenic |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3_1:+47270635 | None:intergenic |
| TCACATCAACCTCAAGGTCA+AGG | 0.582181 | 3_1:-47272696 | Msa0359560:CDS |
| CACATCAACCTCAAGGTCAA+GGG | 0.593562 | 3_1:-47272695 | Msa0359560:CDS |
| AAATGAGTATAAGCTTTCAC+AGG | 0.606888 | 3_1:+47270122 | None:intergenic |
| GGATTACAATATACCAGTGA+AGG | 0.616535 | 3_1:-47270438 | Msa0359560:three_prime_UTR |
| CAATAAATCCATATGGGTGG+TGG | 0.618886 | 3_1:-47270389 | Msa0359560:three_prime_UTR |
| TTATATGATGAGAAAATCGA+CGG | 0.619799 | 3_1:+47272847 | None:intergenic |
| ACTCATAACCATATTAACAA+AGG | 0.624884 | 3_1:+47270461 | None:intergenic |
| CTTGTTCAATAAATCCATAT+GGG | 0.625492 | 3_1:-47270395 | Msa0359560:three_prime_UTR |
| GCCATGCTTCATCAGACAGG+AGG | 0.629302 | 3_1:-47270636 | Msa0359560:CDS |
| CATCGGGAGTCTGCTCAGCA+CGG | 0.629541 | 3_1:+47270800 | None:intergenic |
| TGGTGCTCACATCAACCTCA+AGG | 0.636973 | 3_1:-47272702 | Msa0359560:CDS |
| ACTCATAATCGTATTAACAA+AGG | 0.637523 | 3_1:+47270163 | None:intergenic |
| TGCTGAGCAGACTCCCGATG+AGG | 0.643397 | 3_1:-47270797 | Msa0359560:intron |
| TCAGTTGGAGATGGAAGATG+GGG | 0.647712 | 3_1:-47270670 | Msa0359560:intron |
| GTTCAATAAATCCATATGGG+TGG | 0.650615 | 3_1:-47270392 | Msa0359560:three_prime_UTR |
| GACAAGAAGCCAGAAGCAGG+TGG | 0.652025 | 3_1:-47272722 | Msa0359560:CDS |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3_1:-47270863 | Msa0359560:CDS |
| TGCAGCTGCTCCCAACACTG+AGG | 0.716752 | 3_1:-47272747 | Msa0359560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGAAATTTCAATTTTT+AGG | - | chr3_1:47270336-47270355 | Msa0359560:three_prime_UTR | 10.0% |
| !!! | TTTTGAAATTTCAATTTTTA+GGG | - | chr3_1:47270337-47270356 | Msa0359560:three_prime_UTR | 10.0% |
| !!! | TGATTAAAGTTTTTTTTTTT+TGG | - | chr3_1:47270507-47270526 | Msa0359560:three_prime_UTR | 10.0% |
| !!! | AATATTTTTTACTATGCTTT+AGG | - | chr3_1:47270571-47270590 | Msa0359560:three_prime_UTR | 15.0% |
| !! | TATAGAGTATAAAATGAATT+TGG | - | chr3_1:47270776-47270795 | Msa0359560:intron | 15.0% |
| !! | AAGCTACAATATAAAATTTA+AGG | + | chr3_1:47271693-47271712 | None:intergenic | 15.0% |
| !! | AACTAATTCTATTCATAATA+TGG | + | chr3_1:47272391-47272410 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTGGATTCA+TGG | - | chr3_1:47270515-47270534 | Msa0359560:three_prime_UTR | 20.0% |
| !!! | TCATTTTATACTCTATAAGT+TGG | + | chr3_1:47270773-47270792 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATAATGAATGC+TGG | - | chr3_1:47271014-47271033 | Msa0359560:intron | 20.0% |
| !!! | TATCTTTTCATGTTTTCATT+AGG | - | chr3_1:47271229-47271248 | Msa0359560:intron | 20.0% |
| !!! | TTATATCTTTGTATCTGTTT+TGG | - | chr3_1:47271336-47271355 | Msa0359560:intron | 20.0% |
| !!! | TGGTTATCTAAATTTTATAG+TGG | - | chr3_1:47271356-47271375 | Msa0359560:intron | 20.0% |
| !! | AAAAAATAATTAGAGATGTG+GGG | + | chr3_1:47271560-47271579 | None:intergenic | 20.0% |
| !! | GAAAAAATAATTAGAGATGT+GGG | + | chr3_1:47271561-47271580 | None:intergenic | 20.0% |
| !! | AGAAAAAATAATTAGAGATG+TGG | + | chr3_1:47271562-47271581 | None:intergenic | 20.0% |
| !!! | AATGTGTTTCTTTTTAATGT+CGG | - | chr3_1:47271600-47271619 | Msa0359560:intron | 20.0% |
| !!! | TTTTTGTTTCTATTGTTTGA+TGG | - | chr3_1:47271713-47271732 | Msa0359560:intron | 20.0% |
| !! | AGAGATATAATTGATCTAAA+AGG | + | chr3_1:47271743-47271762 | None:intergenic | 20.0% |
| !! | TATATCTCTATACTCAAAAT+TGG | - | chr3_1:47271754-47271773 | Msa0359560:intron | 20.0% |
| !!! | AATAGAATTAGTTTAACCTA+GGG | - | chr3_1:47272697-47272716 | Msa0359560:CDS | 20.0% |
| ! | TTATATGATGAGAAAATCGA+CGG | + | chr3_1:47270124-47270143 | None:intergenic | 25.0% |
| !! | TTATTGTTTGTTGAAGCATT+AGG | - | chr3_1:47270449-47270468 | Msa0359560:three_prime_UTR | 25.0% |
| !! | TATTGTTTGTTGAAGCATTA+GGG | - | chr3_1:47270450-47270469 | Msa0359560:three_prime_UTR | 25.0% |
| !!! | TTTTGATTTGATCGTTTGAT+AGG | - | chr3_1:47270482-47270501 | Msa0359560:three_prime_UTR | 25.0% |
| !!! | TTTTACTATGCTTTAGGATT+TGG | - | chr3_1:47270577-47270596 | Msa0359560:three_prime_UTR | 25.0% |
| ! | GATTATGAACACACAAATAA+GGG | + | chr3_1:47270625-47270644 | None:intergenic | 25.0% |
| ! | AGATTATGAACACACAAATA+AGG | + | chr3_1:47270626-47270645 | None:intergenic | 25.0% |
| !! | AATAAGATCTTTTACCAAAG+AGG | - | chr3_1:47270866-47270885 | Msa0359560:CDS | 25.0% |
| !! | ATAAGATCTTTTACCAAAGA+GGG | - | chr3_1:47270867-47270886 | Msa0359560:CDS | 25.0% |
| ! | ATAGAAATTAATTCCCTCTT+TGG | + | chr3_1:47270883-47270902 | None:intergenic | 25.0% |
| ! | TAAATCATGTGTGAAAAAAG+AGG | - | chr3_1:47270980-47270999 | Msa0359560:intron | 25.0% |
| ! | GCTATGAATTATTGTTCATT+CGG | - | chr3_1:47271154-47271173 | Msa0359560:intron | 25.0% |
| ! | CTATGAATTATTGTTCATTC+GGG | - | chr3_1:47271155-47271174 | Msa0359560:intron | 25.0% |
| !! | GTTTTCATTAGGATATCTTT+TGG | - | chr3_1:47271240-47271259 | Msa0359560:intron | 25.0% |
| !! | AAATTTTATAGTGGCACTAT+TGG | - | chr3_1:47271365-47271384 | Msa0359560:intron | 25.0% |
| ! | TGGTTTATTCAGAAAAACAT+AGG | - | chr3_1:47271385-47271404 | Msa0359560:intron | 25.0% |
| !!! | TTTTCTAAAGAGTTTTACTC+TGG | - | chr3_1:47271797-47271816 | Msa0359560:intron | 25.0% |
| ! | TTGGAATTATATGCTAATCT+TGG | - | chr3_1:47272001-47272020 | Msa0359560:intron | 25.0% |
| ! | ACTCATAACCATATTAACAA+AGG | + | chr3_1:47272510-47272529 | None:intergenic | 25.0% |
| ! | TTTGTTAATATGGTTATGAG+TGG | - | chr3_1:47272509-47272528 | Msa0359560:intron | 25.0% |
| ! | CTTGTTCAATAAATCCATAT+GGG | - | chr3_1:47272573-47272592 | Msa0359560:intron | 25.0% |
| !! | GAATAGAATTAGTTTAACCT+AGG | - | chr3_1:47272696-47272715 | Msa0359560:CDS | 25.0% |
| ! | ACTCATAATCGTATTAACAA+AGG | + | chr3_1:47272808-47272827 | None:intergenic | 25.0% |
| ! | TTTGTTAATACGATTATGAG+TGG | - | chr3_1:47272807-47272826 | Msa0359560:five_prime_UTR | 25.0% |
| TCCACAAAGTCTAAATCAAA+CGG | + | chr3_1:47270366-47270385 | None:intergenic | 30.0% | |
| TTGATTTAGACTTTGTGGAT+CGG | - | chr3_1:47270367-47270386 | Msa0359560:three_prime_UTR | 30.0% | |
| !!! | GATTTTTAACTTCGGTTACT+TGG | - | chr3_1:47270391-47270410 | Msa0359560:three_prime_UTR | 30.0% |
| !! | TTTGAGATTGTTTTCGTCTT+TGG | + | chr3_1:47270936-47270955 | None:intergenic | 30.0% |
| ! | TGGGATATATGTATTGCTTT+TGG | - | chr3_1:47271066-47271085 | Msa0359560:intron | 30.0% |
| ACTTCAAAAAACTATGTTCG+TGG | - | chr3_1:47271095-47271114 | Msa0359560:intron | 30.0% | |
| !!! | CTATGTTCGTGGTTATTTTT+TGG | - | chr3_1:47271106-47271125 | Msa0359560:intron | 30.0% |
| AAAAGTGGAACCAAAAGATT+TGG | + | chr3_1:47271187-47271206 | None:intergenic | 30.0% | |
| !!! | AAATCTTTTGGTTCCACTTT+TGG | - | chr3_1:47271186-47271205 | Msa0359560:intron | 30.0% |
| !!! | AATCTTTTGGTTCCACTTTT+GGG | - | chr3_1:47271187-47271206 | Msa0359560:intron | 30.0% |
| TGATGTTTAATTAGAGAGCA+GGG | - | chr3_1:47271408-47271427 | Msa0359560:intron | 30.0% | |
| CAATATCAATTGGAGAGAAT+GGG | - | chr3_1:47271488-47271507 | Msa0359560:intron | 30.0% | |
| ! | CAGTTGTGTTTCATCTTTTA+TGG | - | chr3_1:47271511-47271530 | Msa0359560:intron | 30.0% |
| ! | TATAAGTTTGGCTTACAAAG+AGG | - | chr3_1:47271665-47271684 | Msa0359560:intron | 30.0% |
| CTCGATAATAACACTTTCAA+TGG | + | chr3_1:47271838-47271857 | None:intergenic | 30.0% | |
| ! | AGTTTTCATATCATCAGTCT+TGG | - | chr3_1:47271904-47271923 | Msa0359560:intron | 30.0% |
| TCTTGGTTACTGTTGTAAAT+TGG | - | chr3_1:47271921-47271940 | Msa0359560:intron | 30.0% | |
| ACTGTTGTAAATTGGTTACA+TGG | - | chr3_1:47271929-47271948 | Msa0359560:intron | 30.0% | |
| GGATACATGAAACTAAACAT+TGG | - | chr3_1:47271982-47272001 | Msa0359560:intron | 30.0% | |
| TAAATATGTCCTGTTTCAGT+TGG | - | chr3_1:47272283-47272302 | Msa0359560:intron | 30.0% | |
| TTTACAAAGTTCAGCTTCAA+TGG | + | chr3_1:47272477-47272496 | None:intergenic | 30.0% | |
| ATTGAAGCTGAACTTTGTAA+AGG | - | chr3_1:47272476-47272495 | Msa0359560:intron | 30.0% | |
| CGATGTTTCCTTTGTTAATA+TGG | - | chr3_1:47272499-47272518 | Msa0359560:intron | 30.0% | |
| GCTTGTTCAATAAATCCATA+TGG | - | chr3_1:47272572-47272591 | Msa0359560:intron | 30.0% | |
| TTTAATCCCTTTAAGCCAAA+AGG | + | chr3_1:47272651-47272670 | None:intergenic | 30.0% | |
| AAATGAGTATAAGCTTTCAC+AGG | + | chr3_1:47272849-47272868 | None:intergenic | 30.0% | |
| !!! | CTCTTGCTTTTGTTGTTTCT+GGG | + | chr3_1:47270093-47270112 | None:intergenic | 35.0% |
| !!! | TCTCTTGCTTTTGTTGTTTC+TGG | + | chr3_1:47270094-47270113 | None:intergenic | 35.0% |
| ! | TCCGTTTGATTTAGACTTTG+TGG | - | chr3_1:47270362-47270381 | Msa0359560:three_prime_UTR | 35.0% |
| !!! | GGATCGGTGATTTTTAACTT+CGG | - | chr3_1:47270383-47270402 | Msa0359560:three_prime_UTR | 35.0% |
| ! | TGGTATCTTGTTGATGAGTT+GGG | - | chr3_1:47271047-47271066 | Msa0359560:intron | 35.0% |
| TTGGGTGATATGGAAACATT+AGG | - | chr3_1:47271205-47271224 | Msa0359560:intron | 35.0% | |
| AAACGTGCAAACATGAAAAG+TGG | + | chr3_1:47271268-47271287 | None:intergenic | 35.0% | |
| GTGATGTTTAATTAGAGAGC+AGG | - | chr3_1:47271407-47271426 | Msa0359560:intron | 35.0% | |
| ATATTGCAAGGGAACACTTT+CGG | + | chr3_1:47271474-47271493 | None:intergenic | 35.0% | |
| TGTTCCCTTGCAATATCAAT+TGG | - | chr3_1:47271478-47271497 | Msa0359560:intron | 35.0% | |
| CTCTCCAATTGATATTGCAA+GGG | + | chr3_1:47271485-47271504 | None:intergenic | 35.0% | |
| TCTCTCCAATTGATATTGCA+AGG | + | chr3_1:47271486-47271505 | None:intergenic | 35.0% | |
| GCAATATCAATTGGAGAGAA+TGG | - | chr3_1:47271487-47271506 | Msa0359560:intron | 35.0% | |
| ATACAGATTGCAGACATGAA+GGG | + | chr3_1:47271648-47271667 | None:intergenic | 35.0% | |
| TATACAGATTGCAGACATGA+AGG | + | chr3_1:47271649-47271668 | None:intergenic | 35.0% | |
| GTCTGCAATCTGTATAAGTT+TGG | - | chr3_1:47271653-47271672 | Msa0359560:intron | 35.0% | |
| TTGGACATTTCAAAGTGAAC+TGG | - | chr3_1:47271773-47271792 | Msa0359560:intron | 35.0% | |
| ! | AAAGAGTTTTACTCTGGTGT+TGG | - | chr3_1:47271803-47271822 | Msa0359560:intron | 35.0% |
| TCTTGGTTACTGTCGTAAAT+TGG | - | chr3_1:47271958-47271977 | Msa0359560:intron | 35.0% | |
| ! | ATGCTAATCTTGGTCTGTTT+TGG | - | chr3_1:47272011-47272030 | Msa0359560:intron | 35.0% |
| !! | ATGGTAACGAAGTGTTTTTC+AGG | - | chr3_1:47272044-47272063 | Msa0359560:intron | 35.0% |
| !!! | AAGTGTTTTTCAGGATCAAG+AGG | - | chr3_1:47272053-47272072 | Msa0359560:intron | 35.0% |
| !! | TCCATTGCTTTTCTCTTTGA+TGG | - | chr3_1:47272136-47272155 | Msa0359560:intron | 35.0% |
| !! | CCATTGCTTTTCTCTTTGAT+GGG | - | chr3_1:47272137-47272156 | Msa0359560:intron | 35.0% |
| !! | TTAGTTTGTGACTTAGTGCT+AGG | - | chr3_1:47272405-47272424 | Msa0359560:intron | 35.0% |
| GGATTACAATATACCAGTGA+AGG | - | chr3_1:47272530-47272549 | Msa0359560:intron | 35.0% | |
| GTTCAATAAATCCATATGGG+TGG | - | chr3_1:47272576-47272595 | Msa0359560:intron | 35.0% | |
| ATGCATTATATGCATTAGCC+TGG | + | chr3_1:47272723-47272742 | None:intergenic | 35.0% | |
| TTCTTGTCTTCCTCAGTGTT+GGG | + | chr3_1:47270234-47270253 | None:intergenic | 40.0% | |
| TGCTTCTTCCTTCGATTTCT+AGG | - | chr3_1:47270307-47270326 | Msa0359560:three_prime_UTR | 40.0% | |
| GCTTCTTCCTTCGATTTCTA+GGG | - | chr3_1:47270308-47270327 | Msa0359560:three_prime_UTR | 40.0% | |
| AACGAAACCCTAGAAATCGA+AGG | + | chr3_1:47270318-47270337 | None:intergenic | 40.0% | |
| TGAATGCTGGAATGCTTATG+TGG | - | chr3_1:47271027-47271046 | Msa0359560:intron | 40.0% | |
| ! | GTGGTATCTTGTTGATGAGT+TGG | - | chr3_1:47271046-47271065 | Msa0359560:intron | 40.0% |
| GTTTCCATATCACCCAAAAG+TGG | + | chr3_1:47271202-47271221 | None:intergenic | 40.0% | |
| ! | TACTCTGGTGTTGGATTTGA+TGG | - | chr3_1:47271812-47271831 | Msa0359560:intron | 40.0% |
| ! | TGGTTACATGGAACTAGTCT+TGG | - | chr3_1:47271941-47271960 | Msa0359560:intron | 40.0% |
| TGGTTACTGTCGTAAATTGG+TGG | - | chr3_1:47271961-47271980 | Msa0359560:intron | 40.0% | |
| !! | TGGTCTGTTTTGGATGTTGT+AGG | - | chr3_1:47272021-47272040 | Msa0359560:intron | 40.0% |
| !! | CTGTTTTGGATGTTGTAGGA+TGG | - | chr3_1:47272025-47272044 | Msa0359560:intron | 40.0% |
| CCCATCAAAGAGAAAAGCAA+TGG | + | chr3_1:47272140-47272159 | None:intergenic | 40.0% | |
| TCATATTCACGAACCTCATC+GGG | + | chr3_1:47272187-47272206 | None:intergenic | 40.0% | |
| GTCATATTCACGAACCTCAT+CGG | + | chr3_1:47272188-47272207 | None:intergenic | 40.0% | |
| TTTCAGTTGGAGATGGAAGA+TGG | - | chr3_1:47272296-47272315 | Msa0359560:intron | 40.0% | |
| TTCAGTTGGAGATGGAAGAT+GGG | - | chr3_1:47272297-47272316 | Msa0359560:intron | 40.0% | |
| CAAACGAGTATTACCTTCAC+TGG | + | chr3_1:47272546-47272565 | None:intergenic | 40.0% | |
| CAATAAATCCATATGGGTGG+TGG | - | chr3_1:47272579-47272598 | Msa0359560:intron | 40.0% | |
| TATATCAACCACCACCCATA+TGG | + | chr3_1:47272590-47272609 | None:intergenic | 40.0% | |
| ! | AATGTTCTGCTCTGTCCTTT+TGG | - | chr3_1:47272633-47272652 | Msa0359560:intron | 40.0% |
| !!! | CTCTGTCCTTTTGGCTTAAA+GGG | - | chr3_1:47272642-47272661 | Msa0359560:intron | 40.0% |
| ! | AATTAGTTTAACCTAGGGCC+AGG | - | chr3_1:47272702-47272721 | Msa0359560:CDS | 40.0% |
| !!! | TGCTTTTGTTGTTTCTGGGC+CGG | + | chr3_1:47270089-47270108 | None:intergenic | 45.0% |
| CGCGTTTGCGTTTGCATAAT+CGG | - | chr3_1:47270176-47270195 | Msa0359560:three_prime_UTR | 45.0% | |
| ! | GAGATTCTGAAGATGTCGTC+AGG | - | chr3_1:47270198-47270217 | Msa0359560:three_prime_UTR | 45.0% |
| CTTCTTGTCTTCCTCAGTGT+TGG | + | chr3_1:47270235-47270254 | None:intergenic | 45.0% | |
| TCACATCAACCTCAAGGTCA+AGG | - | chr3_1:47270272-47270291 | Msa0359560:three_prime_UTR | 45.0% | |
| CACATCAACCTCAAGGTCAA+GGG | - | chr3_1:47270273-47270292 | Msa0359560:three_prime_UTR | 45.0% | |
| TGGTTTCATACACTGTCGTG+TGG | + | chr3_1:47270753-47270772 | None:intergenic | 45.0% | |
| ! | CGGGTGATAGCCAAATCTTT+TGG | - | chr3_1:47271174-47271193 | Msa0359560:intron | 45.0% |
| !! | GGTTCCACTTTTGGGTGATA+TGG | - | chr3_1:47271195-47271214 | Msa0359560:intron | 45.0% |
| AGAGCAGGGATAGTGTGTAT+CGG | - | chr3_1:47271422-47271441 | Msa0359560:intron | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | - | chr3_1:47272105-47272124 | Msa0359560:intron | 45.0% | |
| TGTCCTGTTTCAGTTGGAGA+TGG | - | chr3_1:47272289-47272308 | Msa0359560:intron | 45.0% | |
| CTTCCATCTCCAACTGAAAC+AGG | + | chr3_1:47272295-47272314 | None:intergenic | 45.0% | |
| TCAGTTGGAGATGGAAGATG+GGG | - | chr3_1:47272298-47272317 | Msa0359560:intron | 45.0% | |
| !!! | GCTCTGTCCTTTTGGCTTAA+AGG | - | chr3_1:47272641-47272660 | Msa0359560:intron | 45.0% |
| !! | TATTATCAAAAAAATATATT+TGG | + | chr3_1:47272234-47272253 | None:intergenic | 5.0% |
| !!! | GCTTTTGTTGTTTCTGGGCC+GGG | + | chr3_1:47270088-47270107 | None:intergenic | 50.0% |
| ! | CGCGCTTTTCTGTGGAATCA+CGG | + | chr3_1:47270160-47270179 | None:intergenic | 50.0% |
| ! | AACGCAAACGCGCTTTTCTG+TGG | + | chr3_1:47270168-47270187 | None:intergenic | 50.0% |
| GAAGACAAGAAGCCAGAAGC+AGG | - | chr3_1:47270243-47270262 | Msa0359560:three_prime_UTR | 50.0% | |
| TGGTGCTCACATCAACCTCA+AGG | - | chr3_1:47270266-47270285 | Msa0359560:three_prime_UTR | 50.0% | |
| ACCTCCTGTCTGATGAAGCA+TGG | + | chr3_1:47272336-47272355 | None:intergenic | 50.0% | |
| ! | ATATGCATTAGCCTGGCCCT+AGG | + | chr3_1:47272716-47272735 | None:intergenic | 50.0% |
| TATCATACAGCTGCTGCAGC+TGG | - | chr3_1:47272762-47272781 | Msa0359560:exon | 50.0% | |
| GCTGCAGCTGGACTTTGTAA+AGG | - | chr3_1:47272774-47272793 | Msa0359560:exon | 50.0% | |
| !! | GTTGTTTCTGGGCCGGGTTT+GGG | + | chr3_1:47270082-47270101 | None:intergenic | 55.0% |
| !! | TGTTGTTTCTGGGCCGGGTT+TGG | + | chr3_1:47270083-47270102 | None:intergenic | 55.0% |
| TGTGGAATCACGGCGACGAT+GGG | + | chr3_1:47270150-47270169 | None:intergenic | 55.0% | |
| GACAAGAAGCCAGAAGCAGG+TGG | - | chr3_1:47270246-47270265 | Msa0359560:three_prime_UTR | 55.0% | |
| ATGTGAGCACCACCTGCTTC+TGG | + | chr3_1:47270258-47270277 | None:intergenic | 55.0% | |
| CAACCTCAAGGTCAAGGGTC+AGG | - | chr3_1:47270278-47270297 | Msa0359560:three_prime_UTR | 55.0% | |
| GAACCTGACCCTTGACCTTG+AGG | + | chr3_1:47270284-47270303 | None:intergenic | 55.0% | |
| GACGCCATGCTTCATCAGAC+AGG | - | chr3_1:47272329-47272348 | Msa0359560:intron | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | - | chr3_1:47272332-47272351 | Msa0359560:intron | 55.0% | |
| CTGTGGAATCACGGCGACGA+TGG | + | chr3_1:47270151-47270170 | None:intergenic | 60.0% | |
| TGCAGCTGCTCCCAACACTG+AGG | - | chr3_1:47270221-47270240 | Msa0359560:three_prime_UTR | 60.0% | |
| CATCGGGAGTCTGCTCAGCA+CGG | + | chr3_1:47272171-47272190 | None:intergenic | 60.0% | |
| TGCTGAGCAGACTCCCGATG+AGG | - | chr3_1:47272171-47272190 | Msa0359560:intron | 60.0% | |
| TCTGGGCCGGGTTTGGGCTT+AGG | + | chr3_1:47270076-47270095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 47270069 | 47272921 | 47270069 | ID=Msa0359560;Name=Msa0359560 |
| chr3_1 | mRNA | 47270069 | 47272921 | 47270069 | ID=Msa0359560-mRNA-1;Parent=Msa0359560;Name=Msa0359560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|1|1|1|1|1|3|554|101 |
| chr3_1 | exon | 47270069 | 47270688 | 47270069 | ID=Msa0359560-mRNA-1:exon:8314;Parent=Msa0359560-mRNA-1 |
| chr3_1 | exon | 47270798 | 47270947 | 47270798 | ID=Msa0359560-mRNA-1:exon:8313;Parent=Msa0359560-mRNA-1 |
| chr3_1 | exon | 47272691 | 47272921 | 47272691 | ID=Msa0359560-mRNA-1:exon:8312;Parent=Msa0359560-mRNA-1 |
| chr3_1 | five_prime_UTR | 47272781 | 47272921 | 47272781 | ID=Msa0359560-mRNA-1:five_prime_utr;Parent=Msa0359560-mRNA-1 |
| chr3_1 | CDS | 47272691 | 47272780 | 47272691 | ID=Msa0359560-mRNA-1:cds;Parent=Msa0359560-mRNA-1 |
| chr3_1 | CDS | 47270798 | 47270947 | 47270798 | ID=Msa0359560-mRNA-1:cds;Parent=Msa0359560-mRNA-1 |
| chr3_1 | CDS | 47270623 | 47270688 | 47270623 | ID=Msa0359560-mRNA-1:cds;Parent=Msa0359560-mRNA-1 |
| chr3_1 | three_prime_UTR | 47270069 | 47270622 | 47270069 | ID=Msa0359560-mRNA-1:three_prime_utr;Parent=Msa0359560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
