AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163230 MtrunA17_Chr1g0177811 97.465 868 22 0 1 868 1 868 0.0 1726
Msa0163230 MtrunA17_Chr5g0443461 69.203 276 13 2 445 720 1 204 5.69e-118 357
Msa0163230 MtrunA17_Chr7g0264611 27.972 429 282 11 434 853 113 523 9.92e-42 160
Msa0163230 MtrunA17_Chr1g0177821 47.143 140 6 2 582 721 25 96 3.74e-27 108
Msa0163230 MtrunA17_Chr4g0073411 83.333 54 9 0 516 569 1 54 1.70e-25 99.8
Msa0163230 MtrunA17_Chr4g0033521 26.696 457 274 21 439 862 788 1216 2.42e-23 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163230 AT3G02760.2 56.678 891 349 12 2 866 4 883 0.0 906
Msa0163230 AT3G02760.1 56.678 891 349 12 2 866 4 883 0.0 906
Msa0163230 AT3G46100.1 30.093 432 269 13 434 853 72 482 6.45e-45 169
Msa0163230 AT3G59410.4 25.814 430 261 16 447 840 797 1204 2.69e-28 123
Msa0163230 AT3G59410.1 25.814 430 261 16 447 840 796 1203 2.88e-28 123
Msa0163230 AT3G59410.3 25.814 430 261 16 447 840 796 1203 2.88e-28 123
Msa0163230 AT3G59410.5 25.814 430 261 16 447 840 796 1203 3.22e-28 123
Msa0163230 AT3G59410.2 25.814 430 261 16 447 840 820 1227 3.32e-28 123
Msa0163230 AT5G03406.1 32.620 187 119 4 434 614 72 257 1.36e-20 92.8

Find 209 sgRNAs with CRISPR-Local

Find 767 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCTTAGTGAGCATATT+AGG 0.176578 1_4:-41209558 Msa0163230:CDS
AGTTTCGATAACAATGTTAA+TGG 0.190060 1_4:+41214951 None:intergenic
GGGACATAAGTTGGGGAAAT+TGG 0.195576 1_4:-41218726 Msa0163230:CDS
GAAGAAGAAGAAAGCTGTTT+TGG 0.204635 1_4:-41218321 Msa0163230:CDS
CATCAATCAGCGGGTTTGTT+AGG 0.213228 1_4:-41219007 Msa0163230:CDS
TTCTGTAGACTTTAGCTATT+TGG 0.222469 1_4:+41216896 None:intergenic
ATTGGAAATGTTCGGGAAAA+TGG 0.223672 1_4:-41218365 Msa0163230:CDS
TCACGGTATCTTCCTTTAGA+TGG 0.228361 1_4:+41216865 None:intergenic
GGCAATGGCGTTGAGGGAAT+TGG 0.254810 1_4:-41218660 Msa0163230:CDS
GCTTGGGGTTTCCGCGGTTT+TGG 0.260225 1_4:-41219032 Msa0163230:CDS
GCGACAAATACCGGGACTTA+TGG 0.264714 1_4:+41209279 None:intergenic
TTCATCTAGGGTTAGGAATT+CGG 0.265210 1_4:+41219234 None:intergenic
CATCCTACTTAGCATGTATT+TGG 0.267581 1_4:-41209257 Msa0163230:three_prime_UTR
TGAATTGCGAGAAACTCTTA+TGG 0.273622 1_4:-41217318 Msa0163230:CDS
CTTCTGCTGTTGCTCCATTA+TGG 0.296000 1_4:+41210064 None:intergenic
TTGCTTGATGAGCTGAATAT+TGG 0.297291 1_4:-41216760 Msa0163230:CDS
GAGAGAGAGAAACAGGGTTT+AGG 0.297576 1_4:+41219419 None:intergenic
GTTGAATCATAGAAAGTTAC+TGG 0.300163 1_4:-41215998 Msa0163230:CDS
TCGGGTCTCGGTGAAATCTT+TGG 0.300184 1_4:-41218575 Msa0163230:CDS
TAAAATCACCTTAGGGATCT+TGG 0.302295 1_4:+41218100 None:intergenic
AATTGACAACAAATTACTTT+TGG 0.309741 1_4:+41218616 None:intergenic
TCATCTAGGGTTAGGAATTC+GGG 0.309870 1_4:+41219235 None:intergenic
GAAACTCTTATGGGAAAATA+TGG 0.310245 1_4:-41217308 Msa0163230:CDS
TGTAGAGAATTCGCGGAAAT+TGG 0.310312 1_4:-41218234 Msa0163230:CDS
GTGAAAATTGTTAAAGTTCA+TGG 0.310530 1_4:-41218806 Msa0163230:CDS
TGTTTCTCTCTCTCGCAAAA+TGG 0.314207 1_4:-41219410 Msa0163230:exon
ACGAGTGTGCGGCGTTGCTT+GGG 0.320606 1_4:-41219048 Msa0163230:CDS
CTCTTCATCAAATCGAAAAC+TGG 0.325895 1_4:+41219111 None:intergenic
AGAGAGAGAAACAGGGTTTA+GGG 0.326821 1_4:+41219420 None:intergenic
AGGGGTCTTGATTATTATAC+TGG 0.328727 1_4:-41214798 Msa0163230:CDS
AACGAGTGTGCGGCGTTGCT+TGG 0.330273 1_4:-41219049 Msa0163230:CDS
CTTAATGGATCTAAGTTTGT+TGG 0.336591 1_4:-41218851 Msa0163230:CDS
AAGGAGGAAGTTGGTGTTGC+TGG 0.340439 1_4:-41218890 Msa0163230:CDS
CAATGTGACTTTGATATTGC+TGG 0.341855 1_4:-41216835 Msa0163230:CDS
TCCAGCAGTTGGTGTAAGTC+TGG 0.342849 1_4:-41210105 Msa0163230:CDS
TTCGATCTTGGCGTTGCTTA+AGG 0.343576 1_4:-41218285 Msa0163230:CDS
TGCTTGATGAGCTGAATATT+GGG 0.348924 1_4:-41216759 Msa0163230:CDS
TGGAGTTAAAGCAGAATTCT+TGG 0.351175 1_4:-41209487 Msa0163230:CDS
ATTCTAACAACCTCAAAATC+TGG 0.356532 1_4:+41216793 None:intergenic
ATGAAAAGATTGGAAATGTT+CGG 0.358192 1_4:-41218373 Msa0163230:CDS
CGACAAATACCGGGACTTAT+GGG 0.358472 1_4:+41209280 None:intergenic
GATTTATGATCTTGCTGATC+AGG 0.370898 1_4:-41217270 Msa0163230:intron
TTTGCATAGTCAAAGTGCTT+TGG 0.379340 1_4:+41209450 None:intergenic
GATGCGGGTTGAGTTGAATT+CGG 0.381314 1_4:-41218747 Msa0163230:CDS
TGAAAAGATTGGAAATGTTC+GGG 0.384406 1_4:-41218372 Msa0163230:CDS
CGAGAGAGTATTTGCCATAA+TGG 0.385031 1_4:-41210078 Msa0163230:CDS
GTGTCCAACTGATGCTAGTT+TGG 0.386260 1_4:-41218546 Msa0163230:CDS
TTCGCGGAAATTGGAGAGTT+GGG 0.386277 1_4:-41218225 Msa0163230:CDS
GTGGAGAGCTCTGTTCTTTG+AGG 0.387870 1_4:-41216984 Msa0163230:CDS
GCTGAGACAGCCGACAGAAT+TGG 0.389382 1_4:-41214999 Msa0163230:CDS
TGGTAGCGATGATTTGAAAT+CGG 0.389582 1_4:-41218594 Msa0163230:CDS
GGTCGATATGATAACCTGAT+AGG 0.391800 1_4:-41210149 Msa0163230:CDS
GAATTGCGAGAAACTCTTAT+GGG 0.394526 1_4:-41217317 Msa0163230:CDS
TATTTGACTTGAGTCTTGCC+AGG 0.396219 1_4:-41214818 Msa0163230:CDS
AAAAGTAATTTGTTGTCAAT+TGG 0.401444 1_4:-41218614 Msa0163230:CDS
GCTAGATTTGTAGCTATGAA+TGG 0.403216 1_4:-41216940 Msa0163230:CDS
TCCTTTGGCAATGGCGTTGA+GGG 0.405634 1_4:-41218666 Msa0163230:CDS
TTAAAGTTCATGGGGTTATG+AGG 0.405693 1_4:-41218796 Msa0163230:CDS
ATGCGGGTTGAGTTGAATTC+GGG 0.408913 1_4:-41218746 Msa0163230:CDS
TTGAATTCGGGACATAAGTT+GGG 0.409138 1_4:-41218734 Msa0163230:CDS
GAGCTCTGAACAAAATTTCC+AGG 0.409583 1_4:+41214871 None:intergenic
GTGTGATGTGTTGTTTCCTT+TGG 0.414975 1_4:-41218681 Msa0163230:CDS
TCGAACCAAACATCCCTATC+AGG 0.415605 1_4:+41210135 None:intergenic
TGAAAATTGTTAAAGTTCAT+GGG 0.417187 1_4:-41218805 Msa0163230:CDS
GCTGATTTGAATGAAAAGAT+TGG 0.418490 1_4:-41218383 Msa0163230:CDS
GGAAGGCGCGAGTTTCATCT+AGG 0.419763 1_4:+41219221 None:intergenic
CATATAGTTCTAAACTTCTC+AGG 0.422854 1_4:+41215946 None:intergenic
GCTGGTGAACTGTGGGATGC+TGG 0.422884 1_4:-41209507 Msa0163230:CDS
AAAATCACCTTAGGGATCTT+GGG 0.423985 1_4:+41218101 None:intergenic
GCAATGGCGTTGAGGGAATT+GGG 0.424124 1_4:-41218659 Msa0163230:CDS
GATAACCTGATAGGGATGTT+TGG 0.424615 1_4:-41210140 Msa0163230:CDS
GTTTGTGGTACTCTAGTTGA+AGG 0.427143 1_4:-41209158 Msa0163230:three_prime_UTR
AGGATGGTGGTGAGGTTAAT+CGG 0.427546 1_4:+41219278 None:intergenic
TGGTGATGGACATAGTTCTA+AGG 0.428148 1_4:-41218909 Msa0163230:CDS
AGTTGGGGAAATTGGATCTT+GGG 0.430935 1_4:-41218718 Msa0163230:CDS
CGCGAGTTTCATCTAGGGTT+AGG 0.432765 1_4:+41219227 None:intergenic
AAGTCTTAGTGAGCATATTA+GGG 0.434249 1_4:-41209557 Msa0163230:CDS
CGGGTCTCGGTGAAATCTTT+GGG 0.436415 1_4:-41218574 Msa0163230:CDS
GAAATTATCTCAGGTAACTT+AGG 0.439616 1_4:+41209203 None:intergenic
TGAACAGATAAGAAAAGAAA+TGG 0.440667 1_4:-41215890 Msa0163230:intron
ATCAATCAGCGGGTTTGTTA+GGG 0.445914 1_4:-41219006 Msa0163230:CDS
CACGGTATCTTCCTTTAGAT+GGG 0.451775 1_4:+41216866 None:intergenic
ATAGCTACAAATCTAGCAAA+TGG 0.455387 1_4:+41216946 None:intergenic
AGGGTTCAGTTCAGAAATGC+AGG 0.455430 1_4:+41219439 None:intergenic
TGGATCTAAGTTTGTTGGAA+AGG 0.456790 1_4:-41218846 Msa0163230:CDS
GGAGTAGACTAATTGAACTT+TGG 0.457489 1_4:-41209024 Msa0163230:three_prime_UTR
CGCCGTAACACTCGGCGGCA+AGG 0.459752 1_4:-41219380 Msa0163230:CDS
TAAATCAAAACGCCTTGATA+AGG 0.460427 1_4:-41214844 Msa0163230:CDS
AAGTAGGATGCGACAAATAC+CGG 0.461873 1_4:+41209270 None:intergenic
ACCCTTGCCGCCGAGTGTTA+CGG 0.463734 1_4:+41219378 None:intergenic
GGGAATGATGTAACACTAGC+TGG 0.463967 1_4:-41209537 Msa0163230:CDS
AAGTTGGGGAAATTGGATCT+TGG 0.464449 1_4:-41218719 Msa0163230:CDS
AAGCGAAATCGGTGCATTCG+AGG 0.464943 1_4:-41218769 Msa0163230:CDS
ATTCGCGGAAATTGGAGAGT+TGG 0.467424 1_4:-41218226 Msa0163230:CDS
GGTAGCGATGATTTGAAATC+GGG 0.469298 1_4:-41218593 Msa0163230:CDS
GTTGAATTCGGGACATAAGT+TGG 0.469912 1_4:-41218735 Msa0163230:CDS
CCCAGACTTACACCAACTGC+TGG 0.472667 1_4:+41210104 None:intergenic
TTTGTTAGGGTTTGCTGATG+TGG 0.473132 1_4:-41218993 Msa0163230:CDS
GAGAGGAACTAGTTCGATCT+TGG 0.477327 1_4:-41218297 Msa0163230:CDS
GTATAAAACCAAAAGCGTAT+TGG 0.479240 1_4:+41208913 None:intergenic
GTTTCTCGCAATTCAAAGAC+AGG 0.479367 1_4:+41217326 None:intergenic
CACGGTGGTTCCATTGTTTG+TGG 0.479593 1_4:-41209173 Msa0163230:three_prime_UTR
ATGAAATCAATGTGTTGCTT+GGG 0.491011 1_4:-41218463 Msa0163230:CDS
AGTCACATTGATAAAATTCA+CGG 0.491051 1_4:+41216848 None:intergenic
TATGAGGGAGAAAGCGAAAT+CGG 0.493860 1_4:-41218780 Msa0163230:CDS
GATAGTGATATTCTGCTTTG+AGG 0.496041 1_4:+41219258 None:intergenic
GAGGCATGGTGCCACAGCCT+TGG 0.499195 1_4:-41217354 Msa0163230:CDS
CATGAAATCAATGTGTTGCT+TGG 0.503155 1_4:-41218464 Msa0163230:CDS
GCCGTAACACTCGGCGGCAA+GGG 0.505341 1_4:-41219379 Msa0163230:CDS
AACAAAAGTTCCAATTCTGT+CGG 0.506503 1_4:+41214989 None:intergenic
GCTCACTAAGACTTCTGTCT+TGG 0.507939 1_4:+41209566 None:intergenic
TAAAGTTCATGGGGTTATGA+GGG 0.508126 1_4:-41218795 Msa0163230:CDS
AATTTGATGGATTCTGGTGA+TGG 0.511330 1_4:-41218923 Msa0163230:CDS
CAAAAGAATCAAGAATCCCT+TGG 0.512906 1_4:-41209431 Msa0163230:CDS
TCTGATGGCGGTGGCGTAGA+CGG 0.513905 1_4:+41219336 None:intergenic
GATGATACTTGTTGGTGAGC+AGG 0.515279 1_4:-41209409 Msa0163230:CDS
AGAGTGATGTAGAGAATTCG+CGG 0.518794 1_4:-41218241 Msa0163230:CDS
AGAAGGGACAACCCATCTAA+AGG 0.520662 1_4:-41216877 Msa0163230:CDS
CAACTGAAAAGCCTCGAGTC+AGG 0.521052 1_4:-41209366 Msa0163230:CDS
TGTGTTGTTTCCTTTGGCAA+TGG 0.522917 1_4:-41218675 Msa0163230:CDS
ACTCCAAATACATGCTAAGT+AGG 0.524092 1_4:+41209254 None:intergenic
CTAAAATAACTGTTCCGTTG+TGG 0.525861 1_4:-41208994 Msa0163230:three_prime_UTR
TTGGTGTTGCTGGTGATATG+AGG 0.526184 1_4:-41218880 Msa0163230:CDS
GGCGGTGGCGTAGACGGTGG+AGG 0.526251 1_4:+41219342 None:intergenic
TTCCTTTGGCAATGGCGTTG+AGG 0.526856 1_4:-41218667 Msa0163230:CDS
AATCGGTGCATTCGAGGATG+CGG 0.527933 1_4:-41218763 Msa0163230:CDS
CGAGTGTGCGGCGTTGCTTG+GGG 0.528173 1_4:-41219047 Msa0163230:CDS
ATGCTGTAGGTGGAAGAGAA+AGG 0.530345 1_4:-41215029 Msa0163230:intron
CAGGTTGGTTCAATTGCTGC+TGG 0.530641 1_4:-41210173 Msa0163230:CDS
AGTGCTTTCTTAGAAAATGC+TGG 0.533444 1_4:-41214915 Msa0163230:CDS
ATGGCCTGACATCTTTGAAA+AGG 0.534756 1_4:-41216921 Msa0163230:CDS
ATCGGTGCATTCGAGGATGC+GGG 0.536101 1_4:-41218762 Msa0163230:CDS
TACTCTAGTTGAAGGAGTAT+AGG 0.539108 1_4:-41209150 Msa0163230:three_prime_UTR
ACTAAGACTTCTGTCTTGGT+TGG 0.540129 1_4:+41209570 None:intergenic
CATAGTTCTAAGGAGGAAGT+TGG 0.543348 1_4:-41218899 Msa0163230:CDS
TTGTTGAGGAACTTCGGAAA+CGG 0.545775 1_4:-41209308 Msa0163230:CDS
AGTCAAATACAACCTTATCA+AGG 0.546616 1_4:+41214832 None:intergenic
ATTTGACTTGAGTCTTGCCA+GGG 0.551096 1_4:-41214817 Msa0163230:CDS
ATCCCTTGGATGATACTTGT+TGG 0.551773 1_4:-41209417 Msa0163230:CDS
TAAAACCAAAAGCGTATTGG+AGG 0.552907 1_4:+41208916 None:intergenic
TCGAAGCAAGTTCCAGCAGT+TGG 0.553760 1_4:-41210116 Msa0163230:CDS
GATGATTTGAAATCGGGTCT+CGG 0.554379 1_4:-41218587 Msa0163230:CDS
TGGCACTGAGAAATTATCTC+AGG 0.555236 1_4:+41209194 None:intergenic
CCAGCAGTTGGTGTAAGTCT+GGG 0.556025 1_4:-41210104 Msa0163230:CDS
ATGTGTTGCTTGGGCTTGTG+TGG 0.556758 1_4:-41218454 Msa0163230:CDS
CGAGTGCGGAAGAATCGATT+CGG 0.557554 1_4:+41219302 None:intergenic
ACACTAGCTGGAGAGCTAGC+TGG 0.561864 1_4:-41209525 Msa0163230:CDS
TCTTGGCGTTGCTTAAGGAA+AGG 0.562932 1_4:-41218280 Msa0163230:CDS
TCCCTCAACGCCATTGCCAA+AGG 0.563042 1_4:+41218665 None:intergenic
TTATCGAAACTTAAACAAGA+AGG 0.563144 1_4:-41214939 Msa0163230:CDS
GAAAATTGTTAAAGTTCATG+GGG 0.564398 1_4:-41218804 Msa0163230:CDS
AAATAGCTAAAGTCTACAGA+AGG 0.569159 1_4:-41216894 Msa0163230:CDS
AACTAGAGTACCACAAACAA+TGG 0.571390 1_4:+41209163 None:intergenic
CATAATGGAGCAACAGCAGA+AGG 0.571956 1_4:-41210063 Msa0163230:CDS
CTGCTTTGAGGATGGTGGTG+AGG 0.574468 1_4:+41219270 None:intergenic
GTCGATATGATAACCTGATA+GGG 0.575105 1_4:-41210148 Msa0163230:CDS
GACAGGTGTATCCAAGGCTG+TGG 0.579031 1_4:+41217343 None:intergenic
GGCGTTGAAGGCTGATGTGA+CGG 0.579034 1_4:-41218951 Msa0163230:CDS
GTGATATTCTGCTTTGAGGA+TGG 0.581331 1_4:+41219262 None:intergenic
TTGTGTGGAAAATTGTGGCG+TGG 0.583231 1_4:-41218439 Msa0163230:CDS
GTTGAGAAGAACGATGAGGA+AGG 0.585073 1_4:+41219204 None:intergenic
CTAACCAAACTAGCATCAGT+TGG 0.585403 1_4:+41218542 None:intergenic
TTCAAAGACAGGTGTATCCA+AGG 0.588118 1_4:+41217337 None:intergenic
ACGGTTAAACCCATAAGTCC+CGG 0.590116 1_4:-41209289 Msa0163230:exon
GGTGAGCAGGAAATAAAAGA+AGG 0.593607 1_4:-41209396 Msa0163230:CDS
GAACTCTCCGCCGTAACACT+CGG 0.593765 1_4:-41219388 Msa0163230:CDS
AATCATAGAAAGTTACTGGA+TGG 0.599873 1_4:-41215994 Msa0163230:CDS
GAGAGCTAGCTGGTGAACTG+TGG 0.602920 1_4:-41209515 Msa0163230:CDS
GGCGTTGCTTGGGGTTTCCG+CGG 0.603370 1_4:-41219038 Msa0163230:CDS
TGAATTCGGGACATAAGTTG+GGG 0.603870 1_4:-41218733 Msa0163230:CDS
TGAGGTTAATCGGTCGAGTG+CGG 0.608685 1_4:+41219288 None:intergenic
AGTAGGATGCGACAAATACC+GGG 0.613137 1_4:+41209271 None:intergenic
AGAGCTAGCTGGTGAACTGT+GGG 0.614291 1_4:-41209514 Msa0163230:CDS
AGTATAATAATCAAGACCCC+TGG 0.615200 1_4:+41214800 None:intergenic
GAAGGCGCGAGTTTCATCTA+GGG 0.616860 1_4:+41219222 None:intergenic
GCTTGATGAGCTGAATATTG+GGG 0.617460 1_4:-41216758 Msa0163230:CDS
ACAGCAGAAGGATCAGAACC+AGG 0.623020 1_4:-41210051 Msa0163230:intron
TGGGCTTGTGTGGAAAATTG+TGG 0.624425 1_4:-41218444 Msa0163230:CDS
TCACCAACAAGTATCATCCA+AGG 0.624639 1_4:+41209414 None:intergenic
TGTGTGGAAAATTGTGGCGT+GGG 0.624758 1_4:-41218438 Msa0163230:CDS
GATGGCGGTGGCGTAGACGG+TGG 0.625826 1_4:+41219339 None:intergenic
TGTTGATGCATTGAATGACC+TGG 0.626342 1_4:-41214889 Msa0163230:CDS
TCTCGGTGAAATCTTTGGGA+AGG 0.626530 1_4:-41218570 Msa0163230:CDS
GGGTTCAGTTCAGAAATGCA+GGG 0.627664 1_4:+41219440 None:intergenic
TTACATCATTACCTGACTCG+AGG 0.629762 1_4:+41209355 None:intergenic
CATCTAGGGTTAGGAATTCG+GGG 0.632926 1_4:+41219236 None:intergenic
AAGATTGCCCAAGATCCCTA+AGG 0.635165 1_4:-41218108 Msa0163230:intron
GACTGCTTATGCTGTACTCG+AGG 0.635527 1_4:-41218408 Msa0163230:CDS
GTTGGTTCAATTGCTGCTGG+TGG 0.636788 1_4:-41210170 Msa0163230:CDS
CACCAACAAGTATCATCCAA+GGG 0.637651 1_4:+41209415 None:intergenic
GATGGCATGATGCAAATATG+TGG 0.639864 1_4:-41215976 Msa0163230:CDS
ATATTCTGCTTTGAGGATGG+TGG 0.642392 1_4:+41219265 None:intergenic
GAGATAATTTCTCAGTGCCA+CGG 0.643742 1_4:-41209191 Msa0163230:three_prime_UTR
TTTGACTTGAGTCTTGCCAG+GGG 0.652899 1_4:-41214816 Msa0163230:CDS
GTTTGTTGAGAAGAACGATG+AGG 0.658497 1_4:+41219200 None:intergenic
TGATGGACATAGTTCTAAGG+AGG 0.659094 1_4:-41218906 Msa0163230:CDS
AAAGGAAAGTGTTCCTGAGG+TGG 0.663181 1_4:-41218828 Msa0163230:CDS
GCAGGAAATAAAAGAAGGCA+CGG 0.665098 1_4:-41209391 Msa0163230:CDS
AATAGCTAAAGTCTACAGAA+GGG 0.665580 1_4:-41216893 Msa0163230:CDS
CTTGCCGCCGAGTGTTACGG+CGG 0.669433 1_4:+41219381 None:intergenic
GTTAGGGTTTGCTGATGTGG+CGG 0.684998 1_4:-41218990 Msa0163230:CDS
ATAGTTCTAAACTTCTCAGG+AGG 0.685246 1_4:+41215949 None:intergenic
GTTGATGAACAACGAGTGTG+CGG 0.691627 1_4:-41219059 Msa0163230:CDS
TGGAAAGGAAAGTGTTCCTG+AGG 0.704848 1_4:-41218831 Msa0163230:CDS
TTTACACAGATAAACCACAA+CGG 0.726125 1_4:+41208980 None:intergenic
CACAAACAATGGAACCACCG+TGG 0.745883 1_4:+41209174 None:intergenic
CTCTCCGCCGTAACACTCGG+CGG 0.746601 1_4:-41219385 Msa0163230:CDS
TGATTGATGATCCAAAACCG+CGG 0.764436 1_4:+41219021 None:intergenic
ATAATTTCTCAGTGCCACGG+TGG 0.774807 1_4:-41209188 Msa0163230:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATGAATGATATTATA+AGG + chr1_4:41212223-41212242 None:intergenic 10.0%
!! ATAATAAAATCAATTACAAA+GGG + chr1_4:41212534-41212553 None:intergenic 10.0%
!! TATAATAAAATCAATTACAA+AGG + chr1_4:41212535-41212554 None:intergenic 10.0%
!!! TTGATTTTATTATAATTGAA+CGG - chr1_4:41212541-41212560 Msa0163230:intron 10.0%
!!! TTTTAATAAAGAAAAAAAAC+AGG + chr1_4:41218613-41218632 None:intergenic 10.0%
!! AATAAAAATTCATTGAATTC+AGG + chr1_4:41210207-41210226 None:intergenic 15.0%
!!! TGAATTTTTATTGAAAGTAA+AGG - chr1_4:41210215-41210234 Msa0163230:intron 15.0%
!!! TGATTTTATTGATTCTTTTA+GGG - chr1_4:41210286-41210305 Msa0163230:intron 15.0%
!! AACTTAACTATTTCATAAAT+TGG + chr1_4:41210507-41210526 None:intergenic 15.0%
!! ATTGTTAAAATCATATTTCA+AGG - chr1_4:41210725-41210744 Msa0163230:intron 15.0%
!! ATATAATTTGAATGCATTAT+TGG + chr1_4:41212297-41212316 None:intergenic 15.0%
!! TTAAAATAGTAAATTTGCAT+TGG - chr1_4:41213049-41213068 Msa0163230:intron 15.0%
!! AACAACAATTATTTATCAAA+AGG + chr1_4:41213104-41213123 None:intergenic 15.0%
!!! AACTCTAAACTTTTTTTTTT+TGG - chr1_4:41213225-41213244 Msa0163230:intron 15.0%
!! ATTTCTTATCTTTATTAATG+TGG - chr1_4:41213304-41213323 Msa0163230:intron 15.0%
!! AAAGAGATTAATTAAAACAA+TGG - chr1_4:41213892-41213911 Msa0163230:intron 15.0%
!! TAAAAACTAAATCCTAATTT+AGG + chr1_4:41214128-41214147 None:intergenic 15.0%
!!! AATTAGGATTTAGTTTTTAA+TGG - chr1_4:41214129-41214148 Msa0163230:intron 15.0%
!! TAACACAAAAAAACAATATT+CGG + chr1_4:41214576-41214595 None:intergenic 15.0%
!! TAAAAAAAAAAACAGGTATT+AGG + chr1_4:41214692-41214711 None:intergenic 15.0%
!! ATGTAACTTAAAAAAGATAA+AGG + chr1_4:41214742-41214761 None:intergenic 15.0%
!!! ATCTTTTTTAAGTTACATAT+TGG - chr1_4:41214744-41214763 Msa0163230:intron 15.0%
!!! AAATAGGTAAATGTTAATTT+TGG + chr1_4:41215087-41215106 None:intergenic 15.0%
!!! AATTTCTACTAGATTTATTT+TGG + chr1_4:41215125-41215144 None:intergenic 15.0%
!!! TTTTTAATTTTGCTTCATTT+GGG + chr1_4:41216009-41216028 None:intergenic 15.0%
!!! TTTTTTAATTTTGCTTCATT+TGG + chr1_4:41216010-41216029 None:intergenic 15.0%
!! ATGAAGCAAAATTAAAAAAA+TGG - chr1_4:41216011-41216030 Msa0163230:intron 15.0%
!! TGAAGCAAAATTAAAAAAAT+GGG - chr1_4:41216012-41216031 Msa0163230:intron 15.0%
!!! TTTAGATTATTATTTAAGAC+TGG - chr1_4:41217095-41217114 Msa0163230:intron 15.0%
!!! TTTAAGATTTCTTAGAATTT+CGG + chr1_4:41217368-41217387 None:intergenic 15.0%
!!! ATTCTAAGAAATCTTAAAAA+AGG - chr1_4:41217370-41217389 Msa0163230:CDS 15.0%
!! TCAAAGAATTAGTAAAAATT+AGG + chr1_4:41217445-41217464 None:intergenic 15.0%
!!! TTTTTATTAATAGTTATCCT+AGG + chr1_4:41217835-41217854 None:intergenic 15.0%
!!! AAAATAACTTGTGTTAAAAT+GGG + chr1_4:41218429-41218448 None:intergenic 15.0%
!! AAAATCAACAGATTATAAAA+AGG + chr1_4:41218767-41218786 None:intergenic 15.0%
!! TGAAAATTGTTAAAGTTCAT+GGG - chr1_4:41209566-41209585 Msa0163230:CDS 20.0%
!!! AATTGACAACAAATTACTTT+TGG + chr1_4:41209758-41209777 None:intergenic 20.0%
!!! AAAAGTAATTTGTTGTCAAT+TGG - chr1_4:41209757-41209776 Msa0163230:intron 20.0%
!!! GTGATTTTATTGATTCTTTT+AGG - chr1_4:41210285-41210304 Msa0163230:intron 20.0%
!! TTAAAAAACCATTCATTAGA+AGG - chr1_4:41210446-41210465 Msa0163230:intron 20.0%
!! TAAAAAACCATTCATTAGAA+GGG - chr1_4:41210447-41210466 Msa0163230:intron 20.0%
!! AAGCTTGTATCATATTATTA+TGG - chr1_4:41210538-41210557 Msa0163230:intron 20.0%
!!! TGAGTTGATTTTAAGAATAT+TGG - chr1_4:41211153-41211172 Msa0163230:intron 20.0%
!! AAATTCATCAACTTTATCTA+TGG + chr1_4:41211330-41211349 None:intergenic 20.0%
!! TAAATTATAGCAAATAAGCT+GGG + chr1_4:41212089-41212108 None:intergenic 20.0%
!! TTAAATTATAGCAAATAAGC+TGG + chr1_4:41212090-41212109 None:intergenic 20.0%
!!! ACATTTTAATGTCATTCATT+TGG - chr1_4:41212109-41212128 Msa0163230:intron 20.0%
!!! GTAATTATTTTTTGTTTCAC+AGG - chr1_4:41212346-41212365 Msa0163230:intron 20.0%
!! AAACTATTTACCATTGATAA+AGG + chr1_4:41212664-41212683 None:intergenic 20.0%
!! TTTATCAATGGTAAATAGTT+TGG - chr1_4:41212663-41212682 Msa0163230:intron 20.0%
!! TTAAATGAAAAAGGATTCAT+TGG - chr1_4:41212892-41212911 Msa0163230:intron 20.0%
!! TAAATCTAAACTGTTAATAC+TGG - chr1_4:41213257-41213276 Msa0163230:intron 20.0%
!! AAATCTAAACTGTTAATACT+GGG - chr1_4:41213258-41213277 Msa0163230:intron 20.0%
!!! ATATTTGAAGCTGTTTTTAA+AGG - chr1_4:41213600-41213619 Msa0163230:intron 20.0%
!!! TATTTGAAGCTGTTTTTAAA+GGG - chr1_4:41213601-41213620 Msa0163230:intron 20.0%
!! ATATGACTTGAGATTTAAAT+AGG + chr1_4:41213923-41213942 None:intergenic 20.0%
!! TGGAGATATTAACTTTAATT+GGG - chr1_4:41213972-41213991 Msa0163230:intron 20.0%
!! GTGAATTTAAACATTGTTAA+TGG - chr1_4:41214016-41214035 Msa0163230:intron 20.0%
!!! TTGTCAGAAAATTATTTTGT+TGG - chr1_4:41214253-41214272 Msa0163230:intron 20.0%
!!! TTAGTTTGTTTTTGAAATGA+TGG - chr1_4:41214338-41214357 Msa0163230:intron 20.0%
!!! CAATTTTGTTTTTTTACCAA+AGG + chr1_4:41214441-41214460 None:intergenic 20.0%
!! GGTATTGTAAAAAAAAAAAC+AGG + chr1_4:41214699-41214718 None:intergenic 20.0%
!! AACTTAAAAAAGATAAAGGA+AGG + chr1_4:41214738-41214757 None:intergenic 20.0%
!!! GTCATTTAACTTTTTTAAGT+GGG - chr1_4:41214766-41214785 Msa0163230:CDS 20.0%
!! AAACCAACAAATTGAAAATT+AGG - chr1_4:41214915-41214934 Msa0163230:CDS 20.0%
!! ATTAAATTCCATCTAATAGA+CGG - chr1_4:41215142-41215161 Msa0163230:intron 20.0%
!! AGATTATGATTATTAAAGAC+TGG + chr1_4:41215202-41215221 None:intergenic 20.0%
!!! CAATGAATTATAAAGGTATA+GGG - chr1_4:41216145-41216164 Msa0163230:intron 20.0%
!!! ATTTTTCCAATTGTTTCATT+TGG - chr1_4:41216341-41216360 Msa0163230:intron 20.0%
!!! TTTTTCCAATTGTTTCATTT+GGG - chr1_4:41216342-41216361 Msa0163230:intron 20.0%
!!! ATTAAATTTTGTCTCATACA+CGG + chr1_4:41217155-41217174 None:intergenic 20.0%
!!! CAAAATTTAATTTCCTCTTT+CGG - chr1_4:41217164-41217183 Msa0163230:intron 20.0%
!!! TATTAACTTGAAATAGTAGA+TGG - chr1_4:41217777-41217796 Msa0163230:intron 20.0%
!! TAATGAGTTTGATAGAAATA+TGG - chr1_4:41217863-41217882 Msa0163230:intron 20.0%
!!! ATATTTTAGTGATGGATTTA+TGG - chr1_4:41218167-41218186 Msa0163230:CDS 20.0%
!! AAATATTCCTTGATTATTCT+GGG - chr1_4:41218395-41218414 Msa0163230:CDS 20.0%
!!! GAAAATAACTTGTGTTAAAA+TGG + chr1_4:41218430-41218449 None:intergenic 20.0%
!! ATTATAAAAAGGAAAACAGT+TGG + chr1_4:41218756-41218775 None:intergenic 20.0%
! GTGAAAATTGTTAAAGTTCA+TGG - chr1_4:41209565-41209584 Msa0163230:CDS 25.0%
! GAAAATTGTTAAAGTTCATG+GGG - chr1_4:41209567-41209586 Msa0163230:CDS 25.0%
!!! GAATCTTTTAAGTTGTATTC+TGG - chr1_4:41209862-41209881 Msa0163230:intron 25.0%
!!! TTTTAAGTTGTATTCTGGTA+GGG - chr1_4:41209867-41209886 Msa0163230:intron 25.0%
! ATGAAAAGATTGGAAATGTT+CGG - chr1_4:41209998-41210017 Msa0163230:intron 25.0%
! GAATCAATAAAATCACCTTA+GGG + chr1_4:41210281-41210300 None:intergenic 25.0%
! AGAATCAATAAAATCACCTT+AGG + chr1_4:41210282-41210301 None:intergenic 25.0%
!!! TAACTTTATCACTTTTTTCG+TGG - chr1_4:41210349-41210368 Msa0163230:intron 25.0%
! TATATGTTAATTTCTGTTCC+TGG - chr1_4:41210864-41210883 Msa0163230:intron 25.0%
! TCTCACAATATGAAAATATC+AGG - chr1_4:41210921-41210940 Msa0163230:intron 25.0%
! CTCACAATATGAAAATATCA+GGG - chr1_4:41210922-41210941 Msa0163230:intron 25.0%
!!! TAATAGAAGAAGTTTTTGAG+AGG - chr1_4:41210998-41211017 Msa0163230:intron 25.0%
! ATTATTGCTTATTCACTTCT+TGG - chr1_4:41211125-41211144 Msa0163230:intron 25.0%
! ATCAACTTTATCTATGGATT+TGG + chr1_4:41211324-41211343 None:intergenic 25.0%
! AGTCACATTGATAAAATTCA+CGG + chr1_4:41211526-41211545 None:intergenic 25.0%
!!! TCTATAACCGTTATTTTTCA+TGG - chr1_4:41211737-41211756 Msa0163230:intron 25.0%
! ATATGTATTAGTATATGTGC+TGG - chr1_4:41211811-41211830 Msa0163230:intron 25.0%
! TATGTATTAGTATATGTGCT+GGG - chr1_4:41211812-41211831 Msa0163230:intron 25.0%
! TAAAATATCGCAGATAAGTT+TGG + chr1_4:41212199-41212218 None:intergenic 25.0%
!!! ATCATTCATTTTAATGTGTC+TGG - chr1_4:41212229-41212248 Msa0163230:intron 25.0%
! TGAACAGATAAGAAAAGAAA+TGG - chr1_4:41212481-41212500 Msa0163230:intron 25.0%
!! TGTTCATTGTGTTTTACATT+TGG - chr1_4:41212586-41212605 Msa0163230:intron 25.0%
!! TTTTACATTTGGAAAGATGT+AGG - chr1_4:41212597-41212616 Msa0163230:intron 25.0%
! CATAGTTTATCCTTTATCAA+TGG - chr1_4:41212651-41212670 Msa0163230:intron 25.0%
!! AATGGTAAATAGTTTGGTTT+AGG - chr1_4:41212669-41212688 Msa0163230:intron 25.0%
!! ATGGTAAATAGTTTGGTTTA+GGG - chr1_4:41212670-41212689 Msa0163230:intron 25.0%
! TTTAGGGATGAAATTTAAGT+TGG - chr1_4:41212686-41212705 Msa0163230:intron 25.0%
! TATTTACCAAAAGAATGCTA+AGG + chr1_4:41212714-41212733 None:intergenic 25.0%
!!! TTCATTTTTGAGCAAATATC+TGG - chr1_4:41212813-41212832 Msa0163230:intron 25.0%
! TGGACTTGATTAAATGAAAA+AGG - chr1_4:41212883-41212902 Msa0163230:intron 25.0%
! ATTGGAACTTGTGTATTTAA+TGG - chr1_4:41213067-41213086 Msa0163230:intron 25.0%
! AGTTTCGATAACAATGTTAA+TGG + chr1_4:41213423-41213442 None:intergenic 25.0%
! TTATCGAAACTTAAACAAGA+AGG - chr1_4:41213432-41213451 Msa0163230:intron 25.0%
!!! ATTTGAAGCTGTTTTTAAAG+GGG - chr1_4:41213602-41213621 Msa0163230:intron 25.0%
! TGAAAAGAACATAAAAGACA+CGG + chr1_4:41213643-41213662 None:intergenic 25.0%
! AAAAATTCATTATATCTGCC+CGG - chr1_4:41213705-41213724 Msa0163230:intron 25.0%
! TCTAACACAAGATATAATGA+AGG - chr1_4:41213811-41213830 Msa0163230:intron 25.0%
!!! ACAGAAGCTTTAGATTTTTT+AGG - chr1_4:41213949-41213968 Msa0163230:intron 25.0%
! GTGGAGATATTAACTTTAAT+TGG - chr1_4:41213971-41213990 Msa0163230:intron 25.0%
! AAACTAAATCCTAATTTAGG+AGG + chr1_4:41214125-41214144 None:intergenic 25.0%
!!! TGAATTGCTTTTTGATGATT+TGG - chr1_4:41214178-41214197 Msa0163230:intron 25.0%
! CAATATTCGGTAAAAGATAA+AGG + chr1_4:41214563-41214582 None:intergenic 25.0%
!! ACAATACCTAATGTTTGTTT+TGG - chr1_4:41214711-41214730 Msa0163230:intron 25.0%
!!! GGTCATTTAACTTTTTTAAG+TGG - chr1_4:41214765-41214784 Msa0163230:CDS 25.0%
! TGAAGTAGACAACAATATTA+AGG + chr1_4:41214892-41214911 None:intergenic 25.0%
!! AAGCCTAATTTTCAATTTGT+TGG + chr1_4:41214921-41214940 None:intergenic 25.0%
! ACAAATTGAAAATTAGGCTT+AGG - chr1_4:41214921-41214940 Msa0163230:CDS 25.0%
! CAAATTGAAAATTAGGCTTA+GGG - chr1_4:41214922-41214941 Msa0163230:CDS 25.0%
!!! AAAAAAATGCTGACTTTCAA+TGG + chr1_4:41215043-41215062 None:intergenic 25.0%
! TACCTATTTAAAAAAGACGA+AGG - chr1_4:41215098-41215117 Msa0163230:intron 25.0%
!! GCAATGAATTATAAAGGTAT+AGG - chr1_4:41216144-41216163 Msa0163230:intron 25.0%
!!! TGGATATTTTGATAATCATG+AGG - chr1_4:41216296-41216315 Msa0163230:intron 25.0%
! TAATATGTGGAGATAGTTAT+TGG + chr1_4:41216423-41216442 None:intergenic 25.0%
!! AATCTGAAACACAAAGATAT+AGG - chr1_4:41216556-41216575 Msa0163230:intron 25.0%
!! ATCTGAAACACAAAGATATA+GGG - chr1_4:41216557-41216576 Msa0163230:intron 25.0%
! TCTTTCACTTAATATCTGTT+TGG + chr1_4:41217398-41217417 None:intergenic 25.0%
! AGATATTAAGTGAAAGAGAA+AGG - chr1_4:41217401-41217420 Msa0163230:CDS 25.0%
!! GCTAAGAATTTCTTTTTGTA+TGG - chr1_4:41217691-41217710 Msa0163230:intron 25.0%
!!! TTCTGCTTATATTTTAGTGA+TGG - chr1_4:41218159-41218178 Msa0163230:CDS 25.0%
! GAAATATTCCTTGATTATTC+TGG - chr1_4:41218394-41218413 Msa0163230:CDS 25.0%
! TTAGTGACACAATTATGTAA+TGG + chr1_4:41218465-41218484 None:intergenic 25.0%
!! AGTTGTTTCCTTGTTAAATT+GGG - chr1_4:41218695-41218714 Msa0163230:CDS 25.0%
!!! AATCTGTTGATTTTGTTAGA+TGG - chr1_4:41218773-41218792 Msa0163230:CDS 25.0%
!! AAAATTTTGTTGAGGAACTT+CGG - chr1_4:41219057-41219076 Msa0163230:CDS 25.0%
!!! GTTTTCAATTTGATGGATTC+TGG - chr1_4:41209442-41209461 Msa0163230:CDS 30.0%
! GATATGAGGATTTTGCTTAA+TGG - chr1_4:41209505-41209524 Msa0163230:CDS 30.0%
! CTTAATGGATCTAAGTTTGT+TGG - chr1_4:41209520-41209539 Msa0163230:CDS 30.0%
!!! CTTTTAAGTTGTATTCTGGT+AGG - chr1_4:41209866-41209885 Msa0163230:intron 30.0%
!! ATGAAATCAATGTGTTGCTT+GGG - chr1_4:41209908-41209927 Msa0163230:intron 30.0%
!! GCTGATTTGAATGAAAAGAT+TGG - chr1_4:41209988-41210007 Msa0163230:intron 30.0%
TGAAAAGATTGGAAATGTTC+GGG - chr1_4:41209999-41210018 Msa0163230:intron 30.0%
!! AAGAAGAAGAAAGCTGTTTT+GGG - chr1_4:41210051-41210070 Msa0163230:intron 30.0%
!! TAATTTGTTAGAGCATCTGT+AGG + chr1_4:41210629-41210648 None:intergenic 30.0%
TAACTCTTACCTCATGTATT+TGG - chr1_4:41210766-41210785 Msa0163230:intron 30.0%
CTCAAAACACAAGTTCAAAA+AGG + chr1_4:41210802-41210821 None:intergenic 30.0%
! CTTTTTGAACTTGTGTTTTG+AGG - chr1_4:41210800-41210819 Msa0163230:intron 30.0%
! TTTTCATATTGTGAGACTCA+AGG + chr1_4:41210917-41210936 None:intergenic 30.0%
GAAACTCTTATGGGAAAATA+TGG - chr1_4:41211063-41211082 Msa0163230:intron 30.0%
ATAGCTACAAATCTAGCAAA+TGG + chr1_4:41211428-41211447 None:intergenic 30.0%
TTCTGTAGACTTTAGCTATT+TGG + chr1_4:41211478-41211497 None:intergenic 30.0%
AAATAGCTAAAGTCTACAGA+AGG - chr1_4:41211477-41211496 Msa0163230:intron 30.0%
AATAGCTAAAGTCTACAGAA+GGG - chr1_4:41211478-41211497 Msa0163230:intron 30.0%
ATTCTAACAACCTCAAAATC+TGG + chr1_4:41211581-41211600 None:intergenic 30.0%
!! AACCAATACTTTTTGTAGCA+GGG + chr1_4:41211664-41211683 None:intergenic 30.0%
!! AAACCAATACTTTTTGTAGC+AGG + chr1_4:41211665-41211684 None:intergenic 30.0%
AGACAGACCATGAAAAATAA+CGG + chr1_4:41211747-41211766 None:intergenic 30.0%
! TGGTCTGTCTATATGTATTT+TGG - chr1_4:41211757-41211776 Msa0163230:intron 30.0%
! ATGACAAAGACTTGATAACA+AGG + chr1_4:41211994-41212013 None:intergenic 30.0%
GTGATATTGTTAAATGTGAC+TGG - chr1_4:41212054-41212073 Msa0163230:intron 30.0%
GTCACATTTAACAAGATCAT+GGG + chr1_4:41212164-41212183 None:intergenic 30.0%
AGTCACATTTAACAAGATCA+TGG + chr1_4:41212165-41212184 None:intergenic 30.0%
ACTGTACTTCTCTAATTTAG+CGG - chr1_4:41212258-41212277 Msa0163230:intron 30.0%
GTTGAATCATAGAAAGTTAC+TGG - chr1_4:41212373-41212392 Msa0163230:intron 30.0%
AATCATAGAAAGTTACTGGA+TGG - chr1_4:41212377-41212396 Msa0163230:intron 30.0%
!! CATATAGTTCTAAACTTCTC+AGG + chr1_4:41212428-41212447 None:intergenic 30.0%
AGATAAGAAAAGAAATGGTG+AGG - chr1_4:41212486-41212505 Msa0163230:intron 30.0%
GATAAGAAAAGAAATGGTGA+GGG - chr1_4:41212487-41212506 Msa0163230:intron 30.0%
CAGATTAAGCACAACAAAAT+TGG + chr1_4:41212568-41212587 None:intergenic 30.0%
TTTGCTCAAAAATGAAGACA+CGG + chr1_4:41212809-41212828 None:intergenic 30.0%
! ACCTGTATGTTTTCAAATGT+TGG - chr1_4:41212863-41212882 Msa0163230:intron 30.0%
TCCAACATTTGAAAACATAC+AGG + chr1_4:41212867-41212886 None:intergenic 30.0%
!!! AAGTTGTTGCCTTTTAGAAT+AGG - chr1_4:41212987-41213006 Msa0163230:intron 30.0%
!!! AGTTGTTGCCTTTTAGAATA+GGG - chr1_4:41212988-41213007 Msa0163230:intron 30.0%
TAGGAAAACCCTATTCTAAA+AGG + chr1_4:41212999-41213018 None:intergenic 30.0%
AATGTTACAACGAATTGTGT+CGG + chr1_4:41213192-41213211 None:intergenic 30.0%
AACAAAAGTTCCAATTCTGT+CGG + chr1_4:41213385-41213404 None:intergenic 30.0%
! GGAACTTTTGTTAAAGAGAA+AGG - chr1_4:41213393-41213412 Msa0163230:intron 30.0%
TAAATCAAAACGCCTTGATA+AGG - chr1_4:41213527-41213546 Msa0163230:intron 30.0%
AGTCAAATACAACCTTATCA+AGG + chr1_4:41213542-41213561 None:intergenic 30.0%
!!! TTTGAAGCTGTTTTTAAAGG+GGG - chr1_4:41213603-41213622 Msa0163230:intron 30.0%
GAAAAGAACATAAAAGACAC+GGG + chr1_4:41213642-41213661 None:intergenic 30.0%
! TTTTTCCTCTCAAAGAATGA+AGG + chr1_4:41213690-41213709 None:intergenic 30.0%
TTAAACCAACTCGTGAAAAT+GGG + chr1_4:41213781-41213800 None:intergenic 30.0%
TTTAAACCAACTCGTGAAAA+TGG + chr1_4:41213782-41213801 None:intergenic 30.0%
!!! GAAGCTTTAGATTTTTTAGG+TGG - chr1_4:41213952-41213971 Msa0163230:intron 30.0%
AACATTGTTAATGGTTTGAG+TGG - chr1_4:41214025-41214044 Msa0163230:intron 30.0%
TTTGAGTGGTCAAGATAAAT+AGG - chr1_4:41214039-41214058 Msa0163230:intron 30.0%
AGGTAAGAAAATGCGATTTA+AGG - chr1_4:41214062-41214081 Msa0163230:intron 30.0%
AAACACATATAACCAAGGAT+TGG + chr1_4:41214089-41214108 None:intergenic 30.0%
ACAGAAAACACATATAACCA+AGG + chr1_4:41214094-41214113 None:intergenic 30.0%
TACAGATTACCTCCTAAATT+AGG - chr1_4:41214113-41214132 Msa0163230:intron 30.0%
TAGATTATGTGTTTCTCTTG+TGG + chr1_4:41214490-41214509 None:intergenic 30.0%
CACATAATCTAGATAGATCA+AGG - chr1_4:41214499-41214518 Msa0163230:intron 30.0%
! GTTGCTGCAATAGTATTTTA+AGG - chr1_4:41214521-41214540 Msa0163230:intron 30.0%
!!! GTTTTTTTGTGTTAACCCTT+CGG - chr1_4:41214582-41214601 Msa0163230:intron 30.0%
GACTTAACAATGCTTATTTG+AGG - chr1_4:41214841-41214860 Msa0163230:CDS 30.0%
TTGGATGTCAATTGAGATAT+TGG - chr1_4:41214981-41215000 Msa0163230:CDS 30.0%
GGCATAATTATTGTCTCAAT+TGG + chr1_4:41215010-41215029 None:intergenic 30.0%
ACTTTCAATGGTTAAATAGG+CGG + chr1_4:41215031-41215050 None:intergenic 30.0%
CTGACTTTCAATGGTTAAAT+AGG + chr1_4:41215034-41215053 None:intergenic 30.0%
!!! GTCCTTCGTCTTTTTTAAAT+AGG + chr1_4:41215103-41215122 None:intergenic 30.0%
ATTAAAGACTGGTGTTCAAT+TGG + chr1_4:41215191-41215210 None:intergenic 30.0%
AAATTCTTCTCAAAACGAGA+AGG + chr1_4:41215397-41215416 None:intergenic 30.0%
CTCAGAAAATGAAAAGGAAA+AGG + chr1_4:41215428-41215447 None:intergenic 30.0%
TACTAGCTCAGAAAATGAAA+AGG + chr1_4:41215434-41215453 None:intergenic 30.0%
!! TGAAGAGTATTCAAAGCATT+AGG - chr1_4:41215738-41215757 Msa0163230:intron 30.0%
TAAACTTGAATAGCATCCTA+GGG + chr1_4:41215901-41215920 None:intergenic 30.0%
ATAAACTTGAATAGCATCCT+AGG + chr1_4:41215902-41215921 None:intergenic 30.0%
! GATGCTATTCAAGTTTATGA+AGG - chr1_4:41215904-41215923 Msa0163230:CDS 30.0%
GAATCTGTTGATATTGTTCT+TGG - chr1_4:41215926-41215945 Msa0163230:CDS 30.0%
TGTAGCACATACAATTGAAT+CGG + chr1_4:41216039-41216058 None:intergenic 30.0%
TGTGCTACATGATTATCAAA+AGG - chr1_4:41216050-41216069 Msa0163230:intron 30.0%
GTTCATACCTGAAATGATTA+GGG - chr1_4:41216072-41216091 Msa0163230:intron 30.0%
TTCATACCTGAAATGATTAG+GGG - chr1_4:41216073-41216092 Msa0163230:intron 30.0%
TATGGTTACAAGGAATTTCT+TGG + chr1_4:41216122-41216141 None:intergenic 30.0%
CTTTATAATTCATTGCGCTA+TGG + chr1_4:41216140-41216159 None:intergenic 30.0%
CATAGCGCAATGAATTATAA+AGG - chr1_4:41216138-41216157 Msa0163230:intron 30.0%
! ATAAAGGTATAGGGAACATA+AGG - chr1_4:41216154-41216173 Msa0163230:intron 30.0%
! TAAAGGTATAGGGAACATAA+GGG - chr1_4:41216155-41216174 Msa0163230:intron 30.0%
! GAACATAAGGGAGTATATTA+TGG - chr1_4:41216167-41216186 Msa0163230:intron 30.0%
! AAGGGAGTATATTATGGAAA+TGG - chr1_4:41216173-41216192 Msa0163230:intron 30.0%
ATCCATACCTGAAATGATTA+GGG + chr1_4:41216281-41216300 None:intergenic 30.0%
TATCCATACCTGAAATGATT+AGG + chr1_4:41216282-41216301 None:intergenic 30.0%
! AATTGTTTCATTTGGGTTCT+CGG - chr1_4:41216349-41216368 Msa0163230:intron 30.0%
GTGAGATATAAGCTAATCAA+GGG + chr1_4:41216774-41216793 None:intergenic 30.0%
AGTGAGATATAAGCTAATCA+AGG + chr1_4:41216775-41216794 None:intergenic 30.0%
AAACTCTTCTCAAAACAAGA+AGG - chr1_4:41216884-41216903 Msa0163230:CDS 30.0%
ATGAATCATTCAACATCACT+TGG + chr1_4:41217029-41217048 None:intergenic 30.0%
TGTTGAATGATTCATCTATG+TGG - chr1_4:41217034-41217053 Msa0163230:intron 30.0%
GTTGAATGATTCATCTATGT+GGG - chr1_4:41217035-41217054 Msa0163230:intron 30.0%
!! ATTTAAGACTGGTCTTCATT+TGG - chr1_4:41217106-41217125 Msa0163230:intron 30.0%
CATTCTTGTTCATTTAGAGA+TGG - chr1_4:41217202-41217221 Msa0163230:intron 30.0%
AATGGGATATAGTCAAACTT+TGG - chr1_4:41217483-41217502 Msa0163230:intron 30.0%
TAACTTGAAATAGTAGATGG+AGG - chr1_4:41217780-41217799 Msa0163230:intron 30.0%
AACTTGAAATAGTAGATGGA+GGG - chr1_4:41217781-41217800 Msa0163230:intron 30.0%
TGGTATATGATAGAACATCA+CGG - chr1_4:41217883-41217902 Msa0163230:intron 30.0%
ATGTCTTATCACATTAAGAG+GGG + chr1_4:41217932-41217951 None:intergenic 30.0%
CATGTCTTATCACATTAAGA+GGG + chr1_4:41217933-41217952 None:intergenic 30.0%
! TGGTTGTTGTTGTTGTAAAT+TGG - chr1_4:41217951-41217970 Msa0163230:intron 30.0%
! GGTTGTTGTTGTTGTAAATT+GGG - chr1_4:41217952-41217971 Msa0163230:intron 30.0%
AAATTCTTGATTCTTGTGAG+TGG - chr1_4:41218058-41218077 Msa0163230:intron 30.0%
TATGTAAATGAAACTGACAC+AGG + chr1_4:41218124-41218143 None:intergenic 30.0%
! TGGATTTATGGTTTTTACAC+AGG - chr1_4:41218179-41218198 Msa0163230:CDS 30.0%
! TTTATGGTTTTTACACAGGT+TGG - chr1_4:41218183-41218202 Msa0163230:CDS 30.0%
ACAATTATGTAATGGCAGAT+AGG + chr1_4:41218457-41218476 None:intergenic 30.0%
TTATCATCACTTCATCAATC+AGG + chr1_4:41218665-41218684 None:intergenic 30.0%
! GAGTTGTTTCCTTGTTAAAT+TGG - chr1_4:41218694-41218713 Msa0163230:CDS 30.0%
GTCTAGGCAATAATATAACA+AGG + chr1_4:41218726-41218745 None:intergenic 30.0%
AAGTCTTAGTGAGCATATTA+GGG - chr1_4:41218814-41218833 Msa0163230:CDS 30.0%
! CCTCAACAAAATTTTCTCTA+GGG + chr1_4:41219052-41219071 None:intergenic 30.0%
! TCCTCAACAAAATTTTCTCT+AGG + chr1_4:41219053-41219072 None:intergenic 30.0%
GAAATTATCTCAGGTAACTT+AGG + chr1_4:41219171-41219190 None:intergenic 30.0%
! GTCGAAAAAGATATTTGTTG+TGG - chr1_4:41219326-41219345 Msa0163230:CDS 30.0%
TTTACACAGATAAACCACAA+CGG + chr1_4:41219394-41219413 None:intergenic 30.0%
! GTATAAAACCAAAAGCGTAT+TGG + chr1_4:41219461-41219480 None:intergenic 30.0%
!! GATTTGAGATTTTCTGATGG+CGG + chr1_4:41209050-41209069 None:intergenic 35.0%
!! TCGGATTTGAGATTTTCTGA+TGG + chr1_4:41209053-41209072 None:intergenic 35.0%
GATAGTGATATTCTGCTTTG+AGG + chr1_4:41209116-41209135 None:intergenic 35.0%
! TTCATCTAGGGTTAGGAATT+CGG + chr1_4:41209140-41209159 None:intergenic 35.0%
! AATCGCTAATGCAACGTTTT+TGG + chr1_4:41209215-41209234 None:intergenic 35.0%
CTCTTCATCAAATCGAAAAC+TGG + chr1_4:41209263-41209282 None:intergenic 35.0%
! TGTGACGGTTTTCAATTTGA+TGG - chr1_4:41209435-41209454 Msa0163230:CDS 35.0%
!! AATTTGATGGATTCTGGTGA+TGG - chr1_4:41209448-41209467 Msa0163230:CDS 35.0%
!! TGGATCTAAGTTTGTTGGAA+AGG - chr1_4:41209525-41209544 Msa0163230:CDS 35.0%
! TTAACAATTTTCACCACCTC+AGG + chr1_4:41209559-41209578 None:intergenic 35.0%
TTAAAGTTCATGGGGTTATG+AGG - chr1_4:41209575-41209594 Msa0163230:CDS 35.0%
TAAAGTTCATGGGGTTATGA+GGG - chr1_4:41209576-41209595 Msa0163230:CDS 35.0%
TTGAATTCGGGACATAAGTT+GGG - chr1_4:41209637-41209656 Msa0163230:intron 35.0%
! TGGTAGCGATGATTTGAAAT+CGG - chr1_4:41209777-41209796 Msa0163230:intron 35.0%
! CATGAAATCAATGTGTTGCT+TGG - chr1_4:41209907-41209926 Msa0163230:intron 35.0%
ATTGGAAATGTTCGGGAAAA+TGG - chr1_4:41210006-41210025 Msa0163230:intron 35.0%
! GAAGAAGAAGAAAGCTGTTT+TGG - chr1_4:41210050-41210069 Msa0163230:intron 35.0%
!! AGAAGAAGAAAGCTGTTTTG+GGG - chr1_4:41210052-41210071 Msa0163230:CDS 35.0%
!!! TGCTGATTTTCTGTCGTTTT+TGG - chr1_4:41210170-41210189 Msa0163230:CDS 35.0%
AAAATCACCTTAGGGATCTT+GGG + chr1_4:41210273-41210292 None:intergenic 35.0%
TAAAATCACCTTAGGGATCT+TGG + chr1_4:41210274-41210293 None:intergenic 35.0%
!!! CTCTTTTAGTTTGACAACCT+TGG - chr1_4:41210659-41210678 Msa0163230:intron 35.0%
!!! TTTTAGTTTGACAACCTTGG+CGG - chr1_4:41210662-41210681 Msa0163230:intron 35.0%
! TTACCTCATGTATTTGGAAC+TGG - chr1_4:41210772-41210791 Msa0163230:intron 35.0%
TGTTAATTTCTGTTCCTGGT+TGG - chr1_4:41210868-41210887 Msa0163230:intron 35.0%
GTTAATTTCTGTTCCTGGTT+GGG - chr1_4:41210869-41210888 Msa0163230:intron 35.0%
TGAATTGCGAGAAACTCTTA+TGG - chr1_4:41211053-41211072 Msa0163230:intron 35.0%
GAATTGCGAGAAACTCTTAT+GGG - chr1_4:41211054-41211073 Msa0163230:intron 35.0%
GATTTATGATCTTGCTGATC+AGG - chr1_4:41211101-41211120 Msa0163230:intron 35.0%
GAATTTCAGCTCATTCTAAC+TGG - chr1_4:41211344-41211363 Msa0163230:intron 35.0%
! TGGTAATCAACTTGTTTGAC+AGG - chr1_4:41211364-41211383 Msa0163230:intron 35.0%
! GGTAATCAACTTGTTTGACA+GGG - chr1_4:41211365-41211384 Msa0163230:intron 35.0%
GCTAGATTTGTAGCTATGAA+TGG - chr1_4:41211431-41211450 Msa0163230:intron 35.0%
CAATGTGACTTTGATATTGC+TGG - chr1_4:41211536-41211555 Msa0163230:intron 35.0%
! AAAAATGGCTCCAGATTTTG+AGG - chr1_4:41211568-41211587 Msa0163230:intron 35.0%
TTGCTTGATGAGCTGAATAT+TGG - chr1_4:41211611-41211630 Msa0163230:intron 35.0%
TGCTTGATGAGCTGAATATT+GGG - chr1_4:41211612-41211631 Msa0163230:intron 35.0%
ACCTGAAATGCCATATTTGT+CGG - chr1_4:41211866-41211885 Msa0163230:intron 35.0%
TCAATTATCAGATTACCTGC+TGG - chr1_4:41212015-41212034 Msa0163230:intron 35.0%
!! ATAGTTCTAAACTTCTCAGG+AGG + chr1_4:41212425-41212444 None:intergenic 35.0%
GAAGTAAGTAACCAGTTACA+AGG + chr1_4:41212767-41212786 None:intergenic 35.0%
! TTGAGCAAATATCTGGAATC+TGG - chr1_4:41212820-41212839 Msa0163230:intron 35.0%
TCAAGTATACAGCATTACAC+TGG - chr1_4:41212940-41212959 Msa0163230:intron 35.0%
TGTGCAAATTTGCACATGAT+AGG + chr1_4:41213018-41213037 None:intergenic 35.0%
!! TTTACTGACTTTCATGCTGT+AGG - chr1_4:41213329-41213348 Msa0163230:intron 35.0%
AGTGCTTTCTTAGAAAATGC+TGG - chr1_4:41213456-41213475 Msa0163230:intron 35.0%
AGTATAATAATCAAGACCCC+TGG + chr1_4:41213574-41213593 None:intergenic 35.0%
AGGGGTCTTGATTATTATAC+TGG - chr1_4:41213573-41213592 Msa0163230:intron 35.0%
TAGTTCCTTCATTCTTTGAG+AGG - chr1_4:41213682-41213701 Msa0163230:intron 35.0%
AAGGATTAACAGTTCTTTGC+TGG - chr1_4:41213830-41213849 Msa0163230:intron 35.0%
TCTTTGCTGGATTAAACCAA+AGG - chr1_4:41213843-41213862 Msa0163230:intron 35.0%
GAGCTTTCACACTCAATATA+AGG - chr1_4:41213865-41213884 Msa0163230:intron 35.0%
!!! TTACCCTTGCTTTTTGTAGA+TGG - chr1_4:41214287-41214306 Msa0163230:intron 35.0%
!!! TACCCTTGCTTTTTGTAGAT+GGG - chr1_4:41214288-41214307 Msa0163230:intron 35.0%
TACCCATCTACAAAAAGCAA+GGG + chr1_4:41214293-41214312 None:intergenic 35.0%
ATACCCATCTACAAAAAGCA+AGG + chr1_4:41214294-41214313 None:intergenic 35.0%
AGGGTAAGAAATATCCCTAT+AGG + chr1_4:41214406-41214425 None:intergenic 35.0%
CCAAAGGAATAGATCATTGA+GGG + chr1_4:41214425-41214444 None:intergenic 35.0%
ACCAAAGGAATAGATCATTG+AGG + chr1_4:41214426-41214445 None:intergenic 35.0%
GAAGGACCAAAACAAACATT+AGG + chr1_4:41214720-41214739 None:intergenic 35.0%
TTTAACCTGCTGTGAGAAAA+AGG + chr1_4:41214801-41214820 None:intergenic 35.0%
AGACAGTAATTGTGACATGT+TGG - chr1_4:41214962-41214981 Msa0163230:CDS 35.0%
GGCACATGTTCAATATGAAA+AGG + chr1_4:41215066-41215085 None:intergenic 35.0%
GCTGAAAGATTCATCTATGT+GGG + chr1_4:41215265-41215284 None:intergenic 35.0%
TGCTGAAAGATTCATCTATG+TGG + chr1_4:41215266-41215285 None:intergenic 35.0%
ATGAATCTTTCAGCATCACT+TGG - chr1_4:41215271-41215290 Msa0163230:intron 35.0%
CAAGAAAACAGGACATATGA+AGG + chr1_4:41215354-41215373 None:intergenic 35.0%
TGTTTCATCTGCAAGAAAAC+AGG + chr1_4:41215365-41215384 None:intergenic 35.0%
AATGAAAAGGAAAAGGACTG+CGG + chr1_4:41215421-41215440 None:intergenic 35.0%
AGTGAGATATAAGCTCATTG+AGG - chr1_4:41215509-41215528 Msa0163230:intron 35.0%
GTGAGATATAAGCTCATTGA+GGG - chr1_4:41215510-41215529 Msa0163230:intron 35.0%
TGAGATATAAGCTCATTGAG+GGG - chr1_4:41215511-41215530 Msa0163230:intron 35.0%
AGTGAGTTACAATACTCAGA+AGG + chr1_4:41215545-41215564 None:intergenic 35.0%
!!! ACACATCTCCTTATTTTCAC+CGG - chr1_4:41215617-41215636 Msa0163230:intron 35.0%
TAATGGAGTCGTGAAAAGAA+GGG + chr1_4:41215653-41215672 None:intergenic 35.0%
! ATTCAAAGCATTAGGAGTAC+CGG - chr1_4:41215746-41215765 Msa0163230:intron 35.0%
TAGTATAACAACTGGATCCA+TGG + chr1_4:41215844-41215863 None:intergenic 35.0%
TTAATCTGAGCAGCAAAGTT+GGG + chr1_4:41215872-41215891 None:intergenic 35.0%
CTCAGATTAACAATATCCCT+AGG - chr1_4:41215882-41215901 Msa0163230:intron 35.0%
TGATATTGTTCTTGGATGCA+TGG - chr1_4:41215934-41215953 Msa0163230:CDS 35.0%
GGTTCATACCTGAAATGATT+AGG - chr1_4:41216071-41216090 Msa0163230:intron 35.0%
! ATTCTTTGCCTTGAGTTTTG+AGG + chr1_4:41216208-41216227 None:intergenic 35.0%
TCCATACCTGAAATGATTAG+GGG + chr1_4:41216280-41216299 None:intergenic 35.0%
GAGAACCCAAATGAAACAAT+TGG + chr1_4:41216350-41216369 None:intergenic 35.0%
CATGGATTTGAATTTATCCG+AGG + chr1_4:41216397-41216416 None:intergenic 35.0%
CAAGTCTTGGAAGTAATATG+TGG + chr1_4:41216436-41216455 None:intergenic 35.0%
AGTTGTCTTGATTGTGCATT+TGG - chr1_4:41216679-41216698 Msa0163230:intron 35.0%
TCAACGTGAGTTACAATACT+CGG - chr1_4:41216735-41216754 Msa0163230:intron 35.0%
CTTATATCTCACTTTGCAAG+AGG - chr1_4:41216782-41216801 Msa0163230:CDS 35.0%
TTCTCAAAACAAGAAGGCAA+AGG - chr1_4:41216890-41216909 Msa0163230:CDS 35.0%
AAGAAACATGTGGATTCCAT+TGG + chr1_4:41216921-41216940 None:intergenic 35.0%
TTTCTTGCAGAAGAAACATG+TGG + chr1_4:41216931-41216950 None:intergenic 35.0%
ATTGTTCCAAATACACCACA+TGG - chr1_4:41216970-41216989 Msa0163230:CDS 35.0%
TCTGAGCATGACTTTATAAG+TGG - chr1_4:41217278-41217297 Msa0163230:CDS 35.0%
CTGAGCATGACTTTATAAGT+GGG - chr1_4:41217279-41217298 Msa0163230:CDS 35.0%
TGAGCATGACTTTATAAGTG+GGG - chr1_4:41217280-41217299 Msa0163230:CDS 35.0%
!! TCATCCGAAATTCTAAGGTT+AGG - chr1_4:41217337-41217356 Msa0163230:CDS 35.0%
TGAGCCTAACCTTAGAATTT+CGG + chr1_4:41217344-41217363 None:intergenic 35.0%
TGTAGCAAAACATGTTATGC+AGG - chr1_4:41217608-41217627 Msa0163230:intron 35.0%
AAACATGTTATGCAGGATAG+TGG - chr1_4:41217615-41217634 Msa0163230:intron 35.0%
TTACTGATCAGATAGAGGAA+AGG + chr1_4:41217657-41217676 None:intergenic 35.0%
CCATGTCTTATCACATTAAG+AGG + chr1_4:41217934-41217953 None:intergenic 35.0%
CCTCTTAATGTGATAAGACA+TGG - chr1_4:41217931-41217950 Msa0163230:intron 35.0%
! GTTGTTGTTGTAAATTGGGA+TGG - chr1_4:41217956-41217975 Msa0163230:intron 35.0%
TAAATGAAACTGACACAGGA+GGG + chr1_4:41218120-41218139 None:intergenic 35.0%
GTCGATATGATAACCTGATA+GGG - chr1_4:41218223-41218242 Msa0163230:CDS 35.0%
TATCAAGCATTATGATCACC+TGG + chr1_4:41218341-41218360 None:intergenic 35.0%
TTCGATACCCAGAATAATCA+AGG + chr1_4:41218405-41218424 None:intergenic 35.0%
TATGTAATGGCAGATAGGAT+TGG + chr1_4:41218452-41218471 None:intergenic 35.0%
GAAGTCTTAGTGAGCATATT+AGG - chr1_4:41218813-41218832 Msa0163230:CDS 35.0%
TGGAGTTAAAGCAGAATTCT+TGG - chr1_4:41218884-41218903 Msa0163230:CDS 35.0%
! TTTGCATAGTCAAAGTGCTT+TGG + chr1_4:41218924-41218943 None:intergenic 35.0%
CAAAAGAATCAAGAATCCCT+TGG - chr1_4:41218940-41218959 Msa0163230:CDS 35.0%
! CCCTAGAGAAAATTTTGTTG+AGG - chr1_4:41219049-41219068 Msa0163230:CDS 35.0%
CATCCTACTTAGCATGTATT+TGG - chr1_4:41219114-41219133 Msa0163230:CDS 35.0%
ACTCCAAATACATGCTAAGT+AGG + chr1_4:41219120-41219139 None:intergenic 35.0%
! AACTAGAGTACCACAAACAA+TGG + chr1_4:41219211-41219230 None:intergenic 35.0%
! TACTCTAGTTGAAGGAGTAT+AGG - chr1_4:41219221-41219240 Msa0163230:CDS 35.0%
GGAGTAGACTAATTGAACTT+TGG - chr1_4:41219347-41219366 Msa0163230:CDS 35.0%
!!! ACGGAACAGTTATTTTAGGT+TGG + chr1_4:41219375-41219394 None:intergenic 35.0%
!! CACAACGGAACAGTTATTTT+AGG + chr1_4:41219379-41219398 None:intergenic 35.0%
CTAAAATAACTGTTCCGTTG+TGG - chr1_4:41219377-41219396 Msa0163230:CDS 35.0%
! ATTTTCCTCCAATACGCTTT+TGG - chr1_4:41219450-41219469 Msa0163230:five_prime_UTR 35.0%
! TAAAACCAAAAGCGTATTGG+AGG + chr1_4:41219458-41219477 None:intergenic 35.0%
AGAGAGAGAAACAGGGTTTA+GGG + chr1_4:41208954-41208973 None:intergenic 40.0%
! TTTTGCGAGAGAGAGAAACA+GGG + chr1_4:41208961-41208980 None:intergenic 40.0%
! ATTTTGCGAGAGAGAGAAAC+AGG + chr1_4:41208962-41208981 None:intergenic 40.0%
TGTTTCTCTCTCTCGCAAAA+TGG - chr1_4:41208961-41208980 Msa0163230:three_prime_UTR 40.0%
!! ATATTCTGCTTTGAGGATGG+TGG + chr1_4:41209109-41209128 None:intergenic 40.0%
!! GTGATATTCTGCTTTGAGGA+TGG + chr1_4:41209112-41209131 None:intergenic 40.0%
! TCATCTAGGGTTAGGAATTC+GGG + chr1_4:41209139-41209158 None:intergenic 40.0%
! GTTTGTTGAGAAGAACGATG+AGG + chr1_4:41209174-41209193 None:intergenic 40.0%
! TGATTGATGATCCAAAACCG+CGG + chr1_4:41209353-41209372 None:intergenic 40.0%
!!! GGTTTTGGATCATCAATCAG+CGG - chr1_4:41209354-41209373 Msa0163230:CDS 40.0%
!! GTTTTGGATCATCAATCAGC+GGG - chr1_4:41209355-41209374 Msa0163230:CDS 40.0%
!! ATCAATCAGCGGGTTTGTTA+GGG - chr1_4:41209365-41209384 Msa0163230:CDS 40.0%
!! TTTGTTAGGGTTTGCTGATG+TGG - chr1_4:41209378-41209397 Msa0163230:CDS 40.0%
!! TGGTGATGGACATAGTTCTA+AGG - chr1_4:41209462-41209481 Msa0163230:CDS 40.0%
!! TGATGGACATAGTTCTAAGG+AGG - chr1_4:41209465-41209484 Msa0163230:CDS 40.0%
!! CATAGTTCTAAGGAGGAAGT+TGG - chr1_4:41209472-41209491 Msa0163230:CDS 40.0%
TATGAGGGAGAAAGCGAAAT+CGG - chr1_4:41209591-41209610 Msa0163230:intron 40.0%
GTTGAATTCGGGACATAAGT+TGG - chr1_4:41209636-41209655 Msa0163230:intron 40.0%
TGAATTCGGGACATAAGTTG+GGG - chr1_4:41209638-41209657 Msa0163230:intron 40.0%
AAGTTGGGGAAATTGGATCT+TGG - chr1_4:41209652-41209671 Msa0163230:intron 40.0%
AGTTGGGGAAATTGGATCTT+GGG - chr1_4:41209653-41209672 Msa0163230:intron 40.0%
!! GTGTGATGTGTTGTTTCCTT+TGG - chr1_4:41209690-41209709 Msa0163230:intron 40.0%
!! TGTGTTGTTTCCTTTGGCAA+TGG - chr1_4:41209696-41209715 Msa0163230:intron 40.0%
! GGTAGCGATGATTTGAAATC+GGG - chr1_4:41209778-41209797 Msa0163230:intron 40.0%
! GATGATTTGAAATCGGGTCT+CGG - chr1_4:41209784-41209803 Msa0163230:intron 40.0%
CTAACCAAACTAGCATCAGT+TGG + chr1_4:41209832-41209851 None:intergenic 40.0%
AGAGTGATGTAGAGAATTCG+CGG - chr1_4:41210130-41210149 Msa0163230:CDS 40.0%
TGTAGAGAATTCGCGGAAAT+TGG - chr1_4:41210137-41210156 Msa0163230:CDS 40.0%
AAACCATTCATTAGAAGGGC+TGG - chr1_4:41210451-41210470 Msa0163230:intron 40.0%
TAACCAGCCCTTCTAATGAA+TGG + chr1_4:41210457-41210476 None:intergenic 40.0%
GTAATCTGATCTGGTATGAC+AGG - chr1_4:41210689-41210708 Msa0163230:intron 40.0%
ACACCAGTTCCAAATACATG+AGG + chr1_4:41210778-41210797 None:intergenic 40.0%
!! GAAGAAGTTTTTGAGAGGCA+TGG - chr1_4:41211003-41211022 Msa0163230:intron 40.0%
TTCAAAGACAGGTGTATCCA+AGG + chr1_4:41211037-41211056 None:intergenic 40.0%
GTTTCTCGCAATTCAAAGAC+AGG + chr1_4:41211048-41211067 None:intergenic 40.0%
TATAAACCAGACCGCCATTA+AGG - chr1_4:41211287-41211306 Msa0163230:intron 40.0%
! AATCAACTTGTTTGACAGGG+TGG - chr1_4:41211368-41211387 Msa0163230:intron 40.0%
! ATGGCCTGACATCTTTGAAA+AGG - chr1_4:41211450-41211469 Msa0163230:intron 40.0%
! GGTACCTTTTCAAAGATGTC+AGG + chr1_4:41211457-41211476 None:intergenic 40.0%
CACGGTATCTTCCTTTAGAT+GGG + chr1_4:41211508-41211527 None:intergenic 40.0%
TCACGGTATCTTCCTTTAGA+TGG + chr1_4:41211509-41211528 None:intergenic 40.0%
GCTTGATGAGCTGAATATTG+GGG - chr1_4:41211613-41211632 Msa0163230:intron 40.0%
! GCTGAATATTGGGGATTTTG+AGG - chr1_4:41211622-41211641 Msa0163230:intron 40.0%
! GTCCCTGCTACAAAAAGTAT+TGG - chr1_4:41211659-41211678 Msa0163230:intron 40.0%
AGTATATGTGCTGGGCTTAT+AGG - chr1_4:41211820-41211839 Msa0163230:intron 40.0%
TAAACTGTAGCACATGAGAC+AGG + chr1_4:41211970-41211989 None:intergenic 40.0%
GATGGCATGATGCAAATATG+TGG - chr1_4:41212395-41212414 Msa0163230:intron 40.0%
!! TTGGTGCCTTAGCATTCTTT+TGG - chr1_4:41212705-41212724 Msa0163230:intron 40.0%
AGATGCAAACACCTTGTAAC+TGG - chr1_4:41212753-41212772 Msa0163230:intron 40.0%
TGTTGATGCATTGAATGACC+TGG - chr1_4:41213482-41213501 Msa0163230:intron 40.0%
!! GAGCTCTGAACAAAATTTCC+AGG + chr1_4:41213503-41213522 None:intergenic 40.0%
! GGAAATTTTGTTCAGAGCTC+TGG - chr1_4:41213503-41213522 Msa0163230:intron 40.0%
!! TATTTGACTTGAGTCTTGCC+AGG - chr1_4:41213553-41213572 Msa0163230:intron 40.0%
!! ATTTGACTTGAGTCTTGCCA+GGG - chr1_4:41213554-41213573 Msa0163230:intron 40.0%
TTATATCTGCCCGGATATAG+TGG - chr1_4:41213714-41213733 Msa0163230:intron 40.0%
AGTGAACATCCACTATATCC+GGG + chr1_4:41213726-41213745 None:intergenic 40.0%
CAGTGAACATCCACTATATC+CGG + chr1_4:41213727-41213746 None:intergenic 40.0%
ATTGAGTGTGAAAGCTCCTT+TGG + chr1_4:41213862-41213881 None:intergenic 40.0%
GAGTGGTCAAGATAAATAGG+AGG - chr1_4:41214042-41214061 Msa0163230:intron 40.0%
GTAGATGGGTATATTGCGTT+TGG - chr1_4:41214302-41214321 Msa0163230:intron 40.0%
! TTTTGCTGCTGTAGCCTATA+GGG - chr1_4:41214389-41214408 Msa0163230:intron 40.0%
CCCTCAATGATCTATTCCTT+TGG - chr1_4:41214422-41214441 Msa0163230:intron 40.0%
TTCCTGAGTGCAACAATTCT+TGG + chr1_4:41214661-41214680 None:intergenic 40.0%
GAATTGTTGCACTCAGGAAT+AGG - chr1_4:41214662-41214681 Msa0163230:intron 40.0%
TTGTTGCACCGTCTATTAGA+TGG + chr1_4:41215153-41215172 None:intergenic 40.0%
! AACCCTTTCTTTTCATGCCA+TGG - chr1_4:41215311-41215330 Msa0163230:intron 40.0%
! ACCCTTTCTTTTCATGCCAT+GGG - chr1_4:41215312-41215331 Msa0163230:intron 40.0%
! ACTGTTCTAAATACACCCCA+TGG + chr1_4:41215331-41215350 None:intergenic 40.0%
ATGAAAAGGAAAAGGACTGC+GGG + chr1_4:41215420-41215439 None:intergenic 40.0%
!! AGATGTGTTGATTGTGCACT+TGG + chr1_4:41215605-41215624 None:intergenic 40.0%
AATGGAGTCGTGAAAAGAAG+GGG + chr1_4:41215652-41215671 None:intergenic 40.0%
CTAATGGAGTCGTGAAAAGA+AGG + chr1_4:41215654-41215673 None:intergenic 40.0%
TCACGACTCCATTAGATCTA+TGG - chr1_4:41215659-41215678 Msa0163230:intron 40.0%
! GCTTTTCGCCATAGATCTAA+TGG + chr1_4:41215670-41215689 None:intergenic 40.0%
TGATTCAGATTATTGCCGAG+AGG + chr1_4:41215692-41215711 None:intergenic 40.0%
GTTAATCTGAGCAGCAAAGT+TGG + chr1_4:41215873-41215892 None:intergenic 40.0%
!! TTCATTTGGGTTCTAAGCAG+TGG + chr1_4:41215996-41216015 None:intergenic 40.0%
ATTGAGCCCCTAATCATTTC+AGG + chr1_4:41216271-41216290 None:intergenic 40.0%
TTCATTGCGCTATGGTTACA+AGG + chr1_4:41216132-41216151 None:intergenic 40.0%
!!! CTTGAGTTTTGAGGTGAGAT+TGG + chr1_4:41216199-41216218 None:intergenic 40.0%
CAATCTCACCTCAAAACTCA+AGG - chr1_4:41216197-41216216 Msa0163230:intron 40.0%
CAAGGCAAAGAATTACTCCA+CGG - chr1_4:41216215-41216234 Msa0163230:intron 40.0%
AGAATTACTCCACGGTTTCA+AGG - chr1_4:41216223-41216242 Msa0163230:intron 40.0%
CAAGAAATTCCTTGAAACCG+TGG + chr1_4:41216235-41216254 None:intergenic 40.0%
CACGGTTTCAAGGAATTTCT+TGG - chr1_4:41216233-41216252 Msa0163230:intron 40.0%
ATTGAGCCCCTAATCATTTC+AGG - chr1_4:41216271-41216290 Msa0163230:intron 40.0%
TGAGGCACATACGATTGTAT+CGG - chr1_4:41216314-41216333 Msa0163230:intron 40.0%
GGAGATAGTTATTGGATGCA+TGG + chr1_4:41216415-41216434 None:intergenic 40.0%
ATGGGGTGAAATTCAAGTCT+TGG + chr1_4:41216449-41216468 None:intergenic 40.0%
GACTTGAATTTCACCCCATT+CGG - chr1_4:41216450-41216469 Msa0163230:intron 40.0%
GCACGAGGTTATTGTTAATC+TGG - chr1_4:41216472-41216491 Msa0163230:intron 40.0%
TTAATCTGGTCAGCGAAGTT+GGG - chr1_4:41216486-41216505 Msa0163230:intron 40.0%
! TTGCTAGAGACTTTTTGCCA+TGG + chr1_4:41216535-41216554 None:intergenic 40.0%
TAAGCTAATCAAGGGACCAT+TGG + chr1_4:41216766-41216785 None:intergenic 40.0%
! TATTCTGAGAGCTAGTAGTC+GGG + chr1_4:41216845-41216864 None:intergenic 40.0%
! GTATTCTGAGAGCTAGTAGT+CGG + chr1_4:41216846-41216865 None:intergenic 40.0%
! CTACTAGCTCTCAGAATACA+AGG - chr1_4:41216847-41216866 Msa0163230:CDS 40.0%
GCTCTCAGAATACAAGGAAA+AGG - chr1_4:41216853-41216872 Msa0163230:CDS 40.0%
GAATACAAGGAAAAGGACTG+CGG - chr1_4:41216860-41216879 Msa0163230:CDS 40.0%
TTCACACCATGTGGTGTATT+TGG + chr1_4:41216979-41216998 None:intergenic 40.0%
ACCACATGGTGTGAAAGAAT+GGG - chr1_4:41216984-41217003 Msa0163230:CDS 40.0%
AAAGTTGCAGCAGATGCTAT+AGG - chr1_4:41217068-41217087 Msa0163230:intron 40.0%
AAGTTGCAGCAGATGCTATA+GGG - chr1_4:41217069-41217088 Msa0163230:intron 40.0%
TTTCCTCTTTCGGACAAATC+TGG - chr1_4:41217174-41217193 Msa0163230:intron 40.0%
TAACCAGATTTGTCCGAAAG+AGG + chr1_4:41217180-41217199 None:intergenic 40.0%
AAAGAGTCCCAAATTGCATG+AGG - chr1_4:41217255-41217274 Msa0163230:intron 40.0%
GAGCATGACTTTATAAGTGG+GGG - chr1_4:41217281-41217300 Msa0163230:CDS 40.0%
TAGGCTCATCCGAAATTCTA+AGG - chr1_4:41217332-41217351 Msa0163230:CDS 40.0%
! TAGCTCGACTTGTACTTCAA+TGG - chr1_4:41217465-41217484 Msa0163230:intron 40.0%
! AGCTCGACTTGTACTTCAAT+GGG - chr1_4:41217466-41217485 Msa0163230:intron 40.0%
ATAGTCAAACTTTGGCGAAC+TGG - chr1_4:41217491-41217510 Msa0163230:intron 40.0%
GAACTGGTTGTTCAAAGAAG+AGG - chr1_4:41217507-41217526 Msa0163230:intron 40.0%
TGCAGGTAGGTTATTGAACT+TGG + chr1_4:41217534-41217553 None:intergenic 40.0%
CAGAGAAAGAAAGGGCTTAT+AGG + chr1_4:41217559-41217578 None:intergenic 40.0%
CTCGTTTACTGATCAGATAG+AGG + chr1_4:41217662-41217681 None:intergenic 40.0%
AGTCAAATCACTAGAGGTAG+AGG - chr1_4:41217805-41217824 Msa0163230:intron 40.0%
AAATCACTAGAGGTAGAGGA+AGG - chr1_4:41217809-41217828 Msa0163230:intron 40.0%
CTTATCACATTAAGAGGGGT+CGG + chr1_4:41217928-41217947 None:intergenic 40.0%
GTAAATGAAACTGACACAGG+AGG + chr1_4:41218121-41218140 None:intergenic 40.0%
GGTCGATATGATAACCTGAT+AGG - chr1_4:41218222-41218241 Msa0163230:CDS 40.0%
GATAACCTGATAGGGATGTT+TGG - chr1_4:41218231-41218250 Msa0163230:CDS 40.0%
!! CGAGAGAGTATTTGCCATAA+TGG - chr1_4:41218293-41218312 Msa0163230:CDS 40.0%
TCTGATGGAGGATATGGTTT+AGG + chr1_4:41218494-41218513 None:intergenic 40.0%
TATCTGTCTGATGGAGGATA+TGG + chr1_4:41218500-41218519 None:intergenic 40.0%
CAGACAGTATAAGAAACAGC+AGG + chr1_4:41218525-41218544 None:intergenic 40.0%
!! CTGCTGTTTCTTATACTGTC+TGG - chr1_4:41218523-41218542 Msa0163230:CDS 40.0%
GATGACTTGATTCATCACCA+CGG - chr1_4:41218548-41218567 Msa0163230:CDS 40.0%
ATGACTTGATTCATCACCAC+GGG - chr1_4:41218549-41218568 Msa0163230:CDS 40.0%
GAGAAAACAGGCAGGAAAAA+AGG + chr1_4:41218641-41218660 None:intergenic 40.0%
CATCAATCAGGTGAGAAAAC+AGG + chr1_4:41218653-41218672 None:intergenic 40.0%
AGGACGTTCCCAATTTAACA+AGG + chr1_4:41218706-41218725 None:intergenic 40.0%
! AACAGTTGGTTCATCTGTCT+AGG + chr1_4:41218742-41218761 None:intergenic 40.0%
ACTAAGACTTCTGTCTTGGT+TGG + chr1_4:41218804-41218823 None:intergenic 40.0%
ATCCCTTGGATGATACTTGT+TGG - chr1_4:41218954-41218973 Msa0163230:CDS 40.0%
CACCAACAAGTATCATCCAA+GGG + chr1_4:41218959-41218978 None:intergenic 40.0%
TCACCAACAAGTATCATCCA+AGG + chr1_4:41218960-41218979 None:intergenic 40.0%
GGTGAGCAGGAAATAAAAGA+AGG - chr1_4:41218975-41218994 Msa0163230:CDS 40.0%
GCAGGAAATAAAAGAAGGCA+CGG - chr1_4:41218980-41218999 Msa0163230:CDS 40.0%
! TTACATCATTACCTGACTCG+AGG + chr1_4:41219019-41219038 None:intergenic 40.0%
TTGTTGAGGAACTTCGGAAA+CGG - chr1_4:41219063-41219082 Msa0163230:CDS 40.0%
AAGTAGGATGCGACAAATAC+CGG + chr1_4:41219104-41219123 None:intergenic 40.0%
!! GCGTTTTCACAGTGATAATG+CGG - chr1_4:41219142-41219161 Msa0163230:CDS 40.0%
! TGGCACTGAGAAATTATCTC+AGG + chr1_4:41219180-41219199 None:intergenic 40.0%
GAGATAATTTCTCAGTGCCA+CGG - chr1_4:41219180-41219199 Msa0163230:CDS 40.0%
GTTTGTGGTACTCTAGTTGA+AGG - chr1_4:41219213-41219232 Msa0163230:CDS 40.0%
GGGTTCAGTTCAGAAATGCA+GGG + chr1_4:41208934-41208953 None:intergenic 45.0%
AGGGTTCAGTTCAGAAATGC+AGG + chr1_4:41208935-41208954 None:intergenic 45.0%
GAGAGAGAGAAACAGGGTTT+AGG + chr1_4:41208955-41208974 None:intergenic 45.0%
!!! TTGAGATTTTCTGATGGCGG+TGG + chr1_4:41209047-41209066 None:intergenic 45.0%
! AGGATGGTGGTGAGGTTAAT+CGG + chr1_4:41209096-41209115 None:intergenic 45.0%
! CATCTAGGGTTAGGAATTCG+GGG + chr1_4:41209138-41209157 None:intergenic 45.0%
GTTGAGAAGAACGATGAGGA+AGG + chr1_4:41209170-41209189 None:intergenic 45.0%
!! CGTTTTTGGATGAACTGCAG+AGG + chr1_4:41209201-41209220 None:intergenic 45.0%
! GTTGATGAACAACGAGTGTG+CGG - chr1_4:41209312-41209331 Msa0163230:CDS 45.0%
! CATCAATCAGCGGGTTTGTT+AGG - chr1_4:41209364-41209383 Msa0163230:CDS 45.0%
!! TTGGTGTTGCTGGTGATATG+AGG - chr1_4:41209491-41209510 Msa0163230:CDS 45.0%
!! TGGAAAGGAAAGTGTTCCTG+AGG - chr1_4:41209540-41209559 Msa0163230:CDS 45.0%
!! AAAGGAAAGTGTTCCTGAGG+TGG - chr1_4:41209543-41209562 Msa0163230:CDS 45.0%
!! GATGCGGGTTGAGTTGAATT+CGG - chr1_4:41209624-41209643 Msa0163230:intron 45.0%
!! ATGCGGGTTGAGTTGAATTC+GGG - chr1_4:41209625-41209644 Msa0163230:intron 45.0%
! GGGACATAAGTTGGGGAAAT+TGG - chr1_4:41209645-41209664 Msa0163230:intron 45.0%
! TCTCGGTGAAATCTTTGGGA+AGG - chr1_4:41209801-41209820 Msa0163230:intron 45.0%
GTGTCCAACTGATGCTAGTT+TGG - chr1_4:41209825-41209844 Msa0163230:intron 45.0%
TGGGCTTGTGTGGAAAATTG+TGG - chr1_4:41209927-41209946 Msa0163230:intron 45.0%
TTGTGTGGAAAATTGTGGCG+TGG - chr1_4:41209932-41209951 Msa0163230:intron 45.0%
TGTGTGGAAAATTGTGGCGT+GGG - chr1_4:41209933-41209952 Msa0163230:intron 45.0%
!!! AAGAAAGCTGTTTTGGGGAG+AGG - chr1_4:41210057-41210076 Msa0163230:CDS 45.0%
GAGAGGAACTAGTTCGATCT+TGG - chr1_4:41210074-41210093 Msa0163230:CDS 45.0%
TTCGATCTTGGCGTTGCTTA+AGG - chr1_4:41210086-41210105 Msa0163230:CDS 45.0%
TCTTGGCGTTGCTTAAGGAA+AGG - chr1_4:41210091-41210110 Msa0163230:CDS 45.0%
ATTCGCGGAAATTGGAGAGT+TGG - chr1_4:41210145-41210164 Msa0163230:CDS 45.0%
TTCGCGGAAATTGGAGAGTT+GGG - chr1_4:41210146-41210165 Msa0163230:CDS 45.0%
AAGATTGCCCAAGATCCCTA+AGG - chr1_4:41210263-41210282 Msa0163230:intron 45.0%
ATCAGATTACAACTCCGCCA+AGG + chr1_4:41210679-41210698 None:intergenic 45.0%
TGCGAACCAATCCTTAATGG+CGG + chr1_4:41211301-41211320 None:intergenic 45.0%
TGGTGCGAACCAATCCTTAA+TGG + chr1_4:41211304-41211323 None:intergenic 45.0%
AGAAGGGACAACCCATCTAA+AGG - chr1_4:41211494-41211513 Msa0163230:intron 45.0%
TGCTGGTCCAGCTGAAAAAA+TGG - chr1_4:41211553-41211572 Msa0163230:intron 45.0%
!!! TCTGGAGCCATTTTTTCAGC+TGG + chr1_4:41211563-41211582 None:intergenic 45.0%
GCCGACAAATATGGCATTTC+AGG + chr1_4:41211870-41211889 None:intergenic 45.0%
ATGCCATATTTGTCGGCATC+TGG - chr1_4:41211873-41211892 Msa0163230:intron 45.0%
TGACCAGATGCCGACAAATA+TGG + chr1_4:41211879-41211898 None:intergenic 45.0%
CTGGTCATAAGAATACCTGC+TGG - chr1_4:41211892-41211911 Msa0163230:intron 45.0%
TCATAAGAATACCTGCTGGC+TGG - chr1_4:41211896-41211915 Msa0163230:intron 45.0%
!! TGCCTGCTGATTGAGTTTTG+CGG - chr1_4:41212135-41212154 Msa0163230:intron 45.0%
! ACTGACTTTCATGCTGTAGG+TGG - chr1_4:41213332-41213351 Msa0163230:intron 45.0%
ATGCTGTAGGTGGAAGAGAA+AGG - chr1_4:41213342-41213361 Msa0163230:intron 45.0%
!! TTTGACTTGAGTCTTGCCAG+GGG - chr1_4:41213555-41213574 Msa0163230:intron 45.0%
!!! TGTTTTTAAAGGGGGTGCTC+AGG - chr1_4:41213611-41213630 Msa0163230:intron 45.0%
! CTAGACCCATTTTCACGAGT+TGG - chr1_4:41213773-41213792 Msa0163230:intron 45.0%
! GCGATTTAAGGTCCAATCCT+TGG - chr1_4:41214074-41214093 Msa0163230:intron 45.0%
! CTTTTGCTGCTGTAGCCTAT+AGG - chr1_4:41214388-41214407 Msa0163230:intron 45.0%
TGGCAATAAAGTTGCAGCAG+AGG + chr1_4:41217061-41217080 None:intergenic 45.0%
AGATTCATCTATGTGGGCGA+TGG + chr1_4:41215259-41215278 None:intergenic 45.0%
CCCCATGGCATGAAAAGAAA+GGG + chr1_4:41215316-41215335 None:intergenic 45.0%
! CCCTTTCTTTTCATGCCATG+GGG - chr1_4:41215313-41215332 Msa0163230:intron 45.0%
ACCCCATGGCATGAAAAGAA+AGG + chr1_4:41215317-41215336 None:intergenic 45.0%
TCTTCTCAAAACGAGAAGGC+AGG + chr1_4:41215393-41215412 None:intergenic 45.0%
TATATCTCACTGTGCGCAAG+AGG + chr1_4:41215500-41215519 None:intergenic 45.0%
! TGCATGTGCCGGTGAAAATA+AGG + chr1_4:41215628-41215647 None:intergenic 45.0%
ATCTATGGCGAAAAGCCTCT+CGG - chr1_4:41215674-41215693 Msa0163230:intron 45.0%
! AGCACTTATGGCTTGTGATC+CGG + chr1_4:41215768-41215787 None:intergenic 45.0%
AGACGAGTAACGAGCACTTA+TGG + chr1_4:41215780-41215799 None:intergenic 45.0%
! ATCCATGGCTGAAGGTCTTT+TGG + chr1_4:41215829-41215848 None:intergenic 45.0%
GGGAGTGGTAGTATAACAAC+TGG + chr1_4:41215852-41215871 None:intergenic 45.0%
TGTTCTTGGATGCATGGACT+TGG - chr1_4:41215940-41215959 Msa0163230:CDS 45.0%
! AGTGAGGCATTCTTTGCTCA+GGG + chr1_4:41215972-41215991 None:intergenic 45.0%
! GCCCCTAATCATTTCAGGTA+TGG - chr1_4:41216276-41216295 Msa0163230:intron 45.0%
ACAATAACCTCGTGCCGAAT+GGG + chr1_4:41216467-41216486 None:intergenic 45.0%
AACAATAACCTCGTGCCGAA+TGG + chr1_4:41216468-41216487 None:intergenic 45.0%
GTTAATCTGGTCAGCGAAGT+TGG - chr1_4:41216485-41216504 Msa0163230:intron 45.0%
GATGAGTAACGAGCACTTGT+TGG - chr1_4:41216579-41216598 Msa0163230:intron 45.0%
GCTTGTAGTTCTTCCTCAAC+CGG - chr1_4:41216601-41216620 Msa0163230:intron 45.0%
TGAATTGCCCAAAGTGTGGA+GGG + chr1_4:41216718-41216737 None:intergenic 45.0%
TTGAATTGCCCAAAGTGTGG+AGG + chr1_4:41216719-41216738 None:intergenic 45.0%
ACGTTGAATTGCCCAAAGTG+TGG + chr1_4:41216722-41216741 None:intergenic 45.0%
CGTGAGTTACAATACTCGGA+AGG - chr1_4:41216739-41216758 Msa0163230:intron 45.0%
ACAATACTCGGAAGGACCAA+TGG - chr1_4:41216747-41216766 Msa0163230:intron 45.0%
AAGAGGAAGAGATGCTGAAG+AGG - chr1_4:41216799-41216818 Msa0163230:CDS 45.0%
AGAGGAAGAGATGCTGAAGA+GGG - chr1_4:41216800-41216819 Msa0163230:CDS 45.0%
GAAGGCAAAGGAACAACCAA+TGG - chr1_4:41216902-41216921 Msa0163230:CDS 45.0%
CACCACATGGTGTGAAAGAA+TGG - chr1_4:41216983-41217002 Msa0163230:CDS 45.0%
ACCCATTCTTTCACACCATG+TGG + chr1_4:41216988-41217007 None:intergenic 45.0%
! GTGAAAGAATGGGTTCCTTG+TGG - chr1_4:41216994-41217013 Msa0163230:intron 45.0%
! AAAGAATGGGTTCCTTGTGG+AGG - chr1_4:41216997-41217016 Msa0163230:intron 45.0%
TGATTCATCTATGTGGGCGA+TGG - chr1_4:41217041-41217060 Msa0163230:intron 45.0%
GCTCAGACCTCATGCAATTT+GGG + chr1_4:41217265-41217284 None:intergenic 45.0%
TGCTCAGACCTCATGCAATT+TGG + chr1_4:41217266-41217285 None:intergenic 45.0%
GAAAGGGCTTATAGGAATGC+AGG + chr1_4:41217551-41217570 None:intergenic 45.0%
CCACGCAACAGAGAAAGAAA+GGG + chr1_4:41217567-41217586 None:intergenic 45.0%
GAGGGTAGTCAAATCACTAG+AGG - chr1_4:41217799-41217818 Msa0163230:intron 45.0%
ATTAAGAGGGGTCGGCTATA+TGG + chr1_4:41217920-41217939 None:intergenic 45.0%
TCTTGATTCTTGTGAGTGGC+TGG - chr1_4:41218062-41218081 Msa0163230:intron 45.0%
TCGAACCAAACATCCCTATC+AGG + chr1_4:41218239-41218258 None:intergenic 45.0%
CTTCTGCTGTTGCTCCATTA+TGG + chr1_4:41218310-41218329 None:intergenic 45.0%
! CATAATGGAGCAACAGCAGA+AGG - chr1_4:41218308-41218327 Msa0163230:CDS 45.0%
TGACTTGATTCATCACCACG+GGG - chr1_4:41218550-41218569 Msa0163230:CDS 45.0%
AATCAGGTGAGAAAACAGGC+AGG + chr1_4:41218649-41218668 None:intergenic 45.0%
GCTCACTAAGACTTCTGTCT+TGG + chr1_4:41218808-41218827 None:intergenic 45.0%
GGGAATGATGTAACACTAGC+TGG - chr1_4:41218834-41218853 Msa0163230:CDS 45.0%
! GATGATACTTGTTGGTGAGC+AGG - chr1_4:41218962-41218981 Msa0163230:CDS 45.0%
ACGGTTAAACCCATAAGTCC+CGG - chr1_4:41219082-41219101 Msa0163230:CDS 45.0%
CGACAAATACCGGGACTTAT+GGG + chr1_4:41219094-41219113 None:intergenic 45.0%
AGTAGGATGCGACAAATACC+GGG + chr1_4:41219103-41219122 None:intergenic 45.0%
ATAATTTCTCAGTGCCACGG+TGG - chr1_4:41219183-41219202 Msa0163230:CDS 45.0%
CGAGTGCGGAAGAATCGATT+CGG + chr1_4:41209072-41209091 None:intergenic 50.0%
TGAGGTTAATCGGTCGAGTG+CGG + chr1_4:41209086-41209105 None:intergenic 50.0%
! CGCGAGTTTCATCTAGGGTT+AGG + chr1_4:41209147-41209166 None:intergenic 50.0%
! GAAGGCGCGAGTTTCATCTA+GGG + chr1_4:41209152-41209171 None:intergenic 50.0%
!! GTTAGGGTTTGCTGATGTGG+CGG - chr1_4:41209381-41209400 Msa0163230:CDS 50.0%
!!! GTTTTCGTGTGAGGCGTTGA+AGG - chr1_4:41209408-41209427 Msa0163230:CDS 50.0%
!! AAGGAGGAAGTTGGTGTTGC+TGG - chr1_4:41209481-41209500 Msa0163230:CDS 50.0%
AAGCGAAATCGGTGCATTCG+AGG - chr1_4:41209602-41209621 Msa0163230:intron 50.0%
AATCGGTGCATTCGAGGATG+CGG - chr1_4:41209608-41209627 Msa0163230:intron 50.0%
TTCCTTTGGCAATGGCGTTG+AGG - chr1_4:41209704-41209723 Msa0163230:intron 50.0%
! TCCTTTGGCAATGGCGTTGA+GGG - chr1_4:41209705-41209724 Msa0163230:intron 50.0%
! GCAATGGCGTTGAGGGAATT+GGG - chr1_4:41209712-41209731 Msa0163230:intron 50.0%
TCGGGTCTCGGTGAAATCTT+TGG - chr1_4:41209796-41209815 Msa0163230:intron 50.0%
CGGGTCTCGGTGAAATCTTT+GGG - chr1_4:41209797-41209816 Msa0163230:intron 50.0%
!! ATGTGTTGCTTGGGCTTGTG+TGG - chr1_4:41209917-41209936 Msa0163230:intron 50.0%
GACTGCTTATGCTGTACTCG+AGG - chr1_4:41209963-41209982 Msa0163230:intron 50.0%
GGCGGAGTTGTAATCTGATC+TGG - chr1_4:41210680-41210699 Msa0163230:intron 50.0%
GTTCCTGGTTGGGATGCAAT+TGG - chr1_4:41210879-41210898 Msa0163230:intron 50.0%
CAACCAATTGCATCCCAACC+AGG + chr1_4:41210885-41210904 None:intergenic 50.0%
CTGGTTGGGATGCAATTGGT+TGG - chr1_4:41210883-41210902 Msa0163230:intron 50.0%
ACCAGACCGCCATTAAGGAT+TGG - chr1_4:41211292-41211311 Msa0163230:intron 50.0%
ACCAATCCTTAATGGCGGTC+TGG + chr1_4:41211296-41211315 None:intergenic 50.0%
GTGGAGAGCTCTGTTCTTTG+AGG - chr1_4:41211387-41211406 Msa0163230:intron 50.0%
AAACTCATCAACCAGCCAGC+AGG + chr1_4:41211910-41211929 None:intergenic 50.0%
GAAAGATCACATCAGCCAGC+AGG + chr1_4:41212033-41212052 None:intergenic 50.0%
!! GCCTGCTGATTGAGTTTTGC+GGG - chr1_4:41212136-41212155 Msa0163230:intron 50.0%
TGTTAACCCTTCGGTTCCCA+AGG - chr1_4:41214591-41214610 Msa0163230:intron 50.0%
GTTAACCCTTCGGTTCCCAA+GGG - chr1_4:41214592-41214611 Msa0163230:intron 50.0%
TTAACCCTTCGGTTCCCAAG+GGG - chr1_4:41214593-41214612 Msa0163230:intron 50.0%
CTTGGCCAAGCATTACTCAC+CGG + chr1_4:41214643-41214662 None:intergenic 50.0%
GGCCAAGAATTGTTGCACTC+AGG - chr1_4:41214656-41214675 Msa0163230:intron 50.0%
! CGTAGCCTTTTTCTCACAGC+AGG - chr1_4:41214793-41214812 Msa0163230:CDS 50.0%
AAGTTGCAGCAGAGGCTGTA+GGG + chr1_4:41215231-41215250 None:intergenic 50.0%
AAAGTTGCAGCAGAGGCTGT+AGG + chr1_4:41215232-41215251 None:intergenic 50.0%
TTGAATTGCCCCAAGTGTGC+AGG - chr1_4:41215565-41215584 Msa0163230:intron 50.0%
TGAATTGCCCCAAGTGTGCA+GGG - chr1_4:41215566-41215585 Msa0163230:intron 50.0%
ACTTCTCTCCCTGCACACTT+GGG + chr1_4:41215577-41215596 None:intergenic 50.0%
AAAGAAGGGGTTGCATGTGC+CGG + chr1_4:41216648-41216667 None:intergenic 50.0%
TGCCAAAAGACCTTCAGCCA+TGG - chr1_4:41215824-41215843 Msa0163230:intron 50.0%
ACAACTGGATCCATGGCTGA+AGG + chr1_4:41215837-41215856 None:intergenic 50.0%
! CAGTGAGGCATTCTTTGCTC+AGG + chr1_4:41215973-41215992 None:intergenic 50.0%
! TTCATTTGGGTTCTCGGCAG+TGG - chr1_4:41216355-41216374 Msa0163230:intron 50.0%
CAATAACCTCGTGCCGAATG+GGG + chr1_4:41216466-41216485 None:intergenic 50.0%
AGCAGCAACAACTGGATCCA+TGG - chr1_4:41216515-41216534 Msa0163230:intron 50.0%
TTTCACGACTCCATGGCATC+GGG + chr1_4:41216631-41216650 None:intergenic 50.0%
CTTTCACGACTCCATGGCAT+CGG + chr1_4:41216632-41216651 None:intergenic 50.0%
TGCCATGGAGTCGTGAAAGA+AGG - chr1_4:41216633-41216652 Msa0163230:intron 50.0%
GCCATGGAGTCGTGAAAGAA+GGG - chr1_4:41216634-41216653 Msa0163230:intron 50.0%
CCATGGAGTCGTGAAAGAAG+GGG - chr1_4:41216635-41216654 Msa0163230:intron 50.0%
AAAGAAGGGGTTGCATGTGC+TGG - chr1_4:41216648-41216667 Msa0163230:intron 50.0%
ACTTCTCTCCCTCCACACTT+TGG - chr1_4:41216707-41216726 Msa0163230:intron 50.0%
CTTCTCTCCCTCCACACTTT+GGG - chr1_4:41216708-41216727 Msa0163230:intron 50.0%
GCAATCCTCACCTTACAAGC+CGG - chr1_4:41217303-41217322 Msa0163230:CDS 50.0%
!! CCTAACTCAACCGGCTTGTA+AGG + chr1_4:41217316-41217335 None:intergenic 50.0%
CCTTACAAGCCGGTTGAGTT+AGG - chr1_4:41217313-41217332 Msa0163230:CDS 50.0%
TCGGATGAGCCTAACTCAAC+CGG + chr1_4:41217325-41217344 None:intergenic 50.0%
GGGCTTATAGGAATGCAGGT+AGG + chr1_4:41217547-41217566 None:intergenic 50.0%
CCCTTTCTTTCTCTGTTGCG+TGG - chr1_4:41217564-41217583 Msa0163230:intron 50.0%
GCCACGCAACAGAGAAAGAA+AGG + chr1_4:41217568-41217587 None:intergenic 50.0%
!! TCTTGTGAGTGGCTGGCTTA+TGG - chr1_4:41218069-41218088 Msa0163230:intron 50.0%
!! CAGGTTGGTTCAATTGCTGC+TGG - chr1_4:41218198-41218217 Msa0163230:CDS 50.0%
! GTTGGTTCAATTGCTGCTGG+TGG - chr1_4:41218201-41218220 Msa0163230:CDS 50.0%
TCGAAGCAAGTTCCAGCAGT+TGG - chr1_4:41218255-41218274 Msa0163230:CDS 50.0%
! TCCAGCAGTTGGTGTAAGTC+TGG - chr1_4:41218266-41218285 Msa0163230:CDS 50.0%
! CCAGCAGTTGGTGTAAGTCT+GGG - chr1_4:41218267-41218286 Msa0163230:CDS 50.0%
ACAGCAGAAGGATCAGAACC+AGG - chr1_4:41218320-41218339 Msa0163230:CDS 50.0%
!! CAGGAGTATCTGTCTGATGG+AGG + chr1_4:41218506-41218525 None:intergenic 50.0%
!! CAGCAGGAGTATCTGTCTGA+TGG + chr1_4:41218509-41218528 None:intergenic 50.0%
CGTGATTAGATACATCCCCG+TGG + chr1_4:41218568-41218587 None:intergenic 50.0%
AGAGCTAGCTGGTGAACTGT+GGG - chr1_4:41218857-41218876 Msa0163230:CDS 50.0%
CAACTGAAAAGCCTCGAGTC+AGG - chr1_4:41219005-41219024 Msa0163230:CDS 50.0%
GCGACAAATACCGGGACTTA+TGG + chr1_4:41219095-41219114 None:intergenic 50.0%
CACAAACAATGGAACCACCG+TGG + chr1_4:41219200-41219219 None:intergenic 50.0%
CACGGTGGTTCCATTGTTTG+TGG - chr1_4:41219198-41219217 Msa0163230:CDS 50.0%
GAACTCTCCGCCGTAACACT+CGG - chr1_4:41208983-41209002 Msa0163230:three_prime_UTR 55.0%
!! CTGCTTTGAGGATGGTGGTG+AGG + chr1_4:41209104-41209123 None:intergenic 55.0%
! GGAAGGCGCGAGTTTCATCT+AGG + chr1_4:41209153-41209172 None:intergenic 55.0%
! GGCGTTGAAGGCTGATGTGA+CGG - chr1_4:41209420-41209439 Msa0163230:CDS 55.0%
ATCGGTGCATTCGAGGATGC+GGG - chr1_4:41209609-41209628 Msa0163230:intron 55.0%
TCCCTCAACGCCATTGCCAA+AGG + chr1_4:41209709-41209728 None:intergenic 55.0%
! GGCAATGGCGTTGAGGGAAT+TGG - chr1_4:41209711-41209730 Msa0163230:intron 55.0%
GACAGGTGTATCCAAGGCTG+TGG + chr1_4:41211031-41211050 None:intergenic 55.0%
GCCCGCAAAACTCAATCAGC+AGG + chr1_4:41212140-41212159 None:intergenic 55.0%
GCTGAGACAGCCGACAGAAT+TGG - chr1_4:41213372-41213391 Msa0163230:intron 55.0%
GCCCGTGGTAATCCAGAGTT+CGG - chr1_4:41214617-41214636 Msa0163230:intron 55.0%
GCCGAACTCTGGATTACCAC+GGG + chr1_4:41214621-41214640 None:intergenic 55.0%
GGCCGAACTCTGGATTACCA+CGG + chr1_4:41214622-41214641 None:intergenic 55.0%
GTGGTAATCCAGAGTTCGGC+CGG - chr1_4:41214621-41214640 Msa0163230:intron 55.0%
ATTACTCACCGGCCGAACTC+TGG + chr1_4:41214632-41214651 None:intergenic 55.0%
TTCGGCCGGTGAGTAATGCT+TGG - chr1_4:41214635-41214654 Msa0163230:intron 55.0%
AGAGGAAGAGAGGCTGACGA+GGG + chr1_4:41215482-41215501 None:intergenic 55.0%
AAGAGGAAGAGAGGCTGACG+AGG + chr1_4:41215483-41215502 None:intergenic 55.0%
ACTGTGCGCAAGAGGAAGAG+AGG + chr1_4:41215492-41215511 None:intergenic 55.0%
CTTCTCTCCCTGCACACTTG+GGG + chr1_4:41215576-41215595 None:intergenic 55.0%
GACTTCTCTCCCTGCACACT+TGG + chr1_4:41215578-41215597 None:intergenic 55.0%
CTGAGCAGCAAAGTTGGGAG+TGG + chr1_4:41215867-41215886 None:intergenic 55.0%
!! GGTTCTAAGCAGTGGCAGTG+AGG + chr1_4:41215988-41216007 None:intergenic 55.0%
!!! GCAGTGGGGCGTTTTTTCCT+CGG - chr1_4:41216377-41216396 Msa0163230:intron 55.0%
ATTTCACCCCATTCGGCACG+AGG - chr1_4:41216457-41216476 Msa0163230:intron 55.0%
CCCCTTCTTTCACGACTCCA+TGG + chr1_4:41216638-41216657 None:intergenic 55.0%
ACTTGGCAGACACCTCCACA+AGG + chr1_4:41217012-41217031 None:intergenic 55.0%
!! CTCAACCGGCTTGTAAGGTG+AGG + chr1_4:41217311-41217330 None:intergenic 55.0%
CTAGAGGTAGAGGAAGGCCT+AGG - chr1_4:41217815-41217834 Msa0163230:intron 55.0%
CCCAGACTTACACCAACTGC+TGG + chr1_4:41218270-41218289 None:intergenic 55.0%
ACACTAGCTGGAGAGCTAGC+TGG - chr1_4:41218846-41218865 Msa0163230:CDS 55.0%
GAGAGCTAGCTGGTGAACTG+TGG - chr1_4:41218856-41218875 Msa0163230:CDS 55.0%
ACCCTTGCCGCCGAGTGTTA+CGG + chr1_4:41208996-41209015 None:intergenic 60.0%
!! TCTGATGGCGGTGGCGTAGA+CGG + chr1_4:41209038-41209057 None:intergenic 60.0%
AACGAGTGTGCGGCGTTGCT+TGG - chr1_4:41209322-41209341 Msa0163230:CDS 60.0%
ACGAGTGTGCGGCGTTGCTT+GGG - chr1_4:41209323-41209342 Msa0163230:CDS 60.0%
! GCTTGGGGTTTCCGCGGTTT+TGG - chr1_4:41209339-41209358 Msa0163230:CDS 60.0%
GATTACCACGGGCTCCCCTT+GGG + chr1_4:41214610-41214629 None:intergenic 60.0%
CTGGTCAGCGAAGTTGGGAG+CGG - chr1_4:41216491-41216510 Msa0163230:intron 60.0%
GGAGCGGTAGCAGCAACAAC+TGG - chr1_4:41216507-41216526 Msa0163230:intron 60.0%
AACCGGTACTCCCGATGCCA+TGG - chr1_4:41216618-41216637 Msa0163230:intron 60.0%
! CTCCATGGCATCGGGAGTAC+CGG + chr1_4:41216623-41216642 None:intergenic 60.0%
GCTGGTGAACTGTGGGATGC+TGG - chr1_4:41218864-41218883 Msa0163230:CDS 60.0%
CTCTCCGCCGTAACACTCGG+CGG - chr1_4:41208986-41209005 Msa0163230:three_prime_UTR 65.0%
CTTGCCGCCGAGTGTTACGG+CGG + chr1_4:41208993-41209012 None:intergenic 65.0%
GCCGTAACACTCGGCGGCAA+GGG - chr1_4:41208992-41209011 Msa0163230:three_prime_UTR 65.0%
CGAGTGTGCGGCGTTGCTTG+GGG - chr1_4:41209324-41209343 Msa0163230:CDS 65.0%
GGCGTTGCTTGGGGTTTCCG+CGG - chr1_4:41209333-41209352 Msa0163230:CDS 65.0%
! GGCGGCAGCGTTTTCGTGTG+AGG - chr1_4:41209399-41209418 Msa0163230:CDS 65.0%
!! GAGGCATGGTGCCACAGCCT+TGG - chr1_4:41211017-41211036 Msa0163230:intron 65.0%
GGCTCCCCTTGGGAACCGAA+GGG + chr1_4:41214600-41214619 None:intergenic 65.0%
GGATTACCACGGGCTCCCCT+TGG + chr1_4:41214611-41214630 None:intergenic 65.0%
TGGGTTCTCGGCAGTGGCAG+TGG - chr1_4:41216361-41216380 Msa0163230:intron 65.0%
GGGTTCTCGGCAGTGGCAGT+GGG - chr1_4:41216362-41216381 Msa0163230:intron 65.0%
GGTTCTCGGCAGTGGCAGTG+GGG - chr1_4:41216363-41216382 Msa0163230:intron 65.0%
!! GGCATCGGGAGTACCGGTTG+AGG + chr1_4:41216617-41216636 None:intergenic 65.0%
CGCCGTAACACTCGGCGGCA+AGG - chr1_4:41208991-41209010 Msa0163230:three_prime_UTR 70.0%
! GATGGCGGTGGCGTAGACGG+TGG + chr1_4:41209035-41209054 None:intergenic 70.0%
GGGCTCCCCTTGGGAACCGA+AGG + chr1_4:41214601-41214620 None:intergenic 70.0%
GGCGGTGGCGTAGACGGTGG+AGG + chr1_4:41209032-41209051 None:intergenic 75.0%
CGGTTCCCAAGGGGAGCCCG+TGG - chr1_4:41214602-41214621 Msa0163230:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41208909 41219484 41208909 ID=Msa0163230;Name=Msa0163230
chr1_4 mRNA 41208909 41219484 41208909 ID=Msa0163230-mRNA-1;Parent=Msa0163230;Name=Msa0163230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=71|1|1|1|0.83|1|7|387|868
chr1_4 exon 41208909 41209601 41208909 ID=Msa0163230-mRNA-1:exon:11859;Parent=Msa0163230-mRNA-1
chr1_4 exon 41210052 41210192 41210052 ID=Msa0163230-mRNA-1:exon:11858;Parent=Msa0163230-mRNA-1
chr1_4 exon 41214761 41215042 41214761 ID=Msa0163230-mRNA-1:exon:11857;Parent=Msa0163230-mRNA-1
chr1_4 exon 41215891 41216025 41215891 ID=Msa0163230-mRNA-1:exon:11856;Parent=Msa0163230-mRNA-1
chr1_4 exon 41216750 41217007 41216750 ID=Msa0163230-mRNA-1:exon:11855;Parent=Msa0163230-mRNA-1
chr1_4 exon 41217271 41217450 41217271 ID=Msa0163230-mRNA-1:exon:11854;Parent=Msa0163230-mRNA-1
chr1_4 exon 41218109 41219484 41218109 ID=Msa0163230-mRNA-1:exon:11853;Parent=Msa0163230-mRNA-1
chr1_4 five_prime_UTR 41219414 41219484 41219414 ID=Msa0163230-mRNA-1:five_prime_utr;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41218109 41219413 41218109 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41217271 41217450 41217271 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41216750 41217007 41216750 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41215891 41216025 41215891 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41214761 41215042 41214761 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41210052 41210192 41210052 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 CDS 41209296 41209601 41209296 ID=Msa0163230-mRNA-1:cds;Parent=Msa0163230-mRNA-1
chr1_4 three_prime_UTR 41208909 41209295 41208909 ID=Msa0163230-mRNA-1:three_prime_utr;Parent=Msa0163230-mRNA-1
Gene Sequence

>Msa0163230

ATGGAACTCTCCGCCGTAACACTCGGCGGCAAGGGTTCATCACTCTCTTCCTCCACCGTCTACGCCACCGCCATCAGAAAATCTCAAATCCGAATCGATTCTTCCGCACTCGACCGATTAACCTCACCACCATCCTCAAAGCAGAATATCACTATCCCCGAATTCCTAACCCTAGATGAAACTCGCGCCTTCCTCATCGTTCTTCTCAACAAACTCATCCTCTGCAGTTCATCCAAAAACGTTGCATTAGCGATTTCAGAATCTCTCAATTCGAATCAAACCAGTTTTCGATTTGATGAAGAGTTTGATGTAACTGAAGATGAACACTCGTTGTTGATGAACAACGAGTGTGCGGCGTTGCTTGGGGTTTCCGCGGTTTTGGATCATCAATCAGCGGGTTTGTTAGGGTTTGCTGATGTGGCGGCAGCGTTTTCGTGTGAGGCGTTGAAGGCTGATGTGACGGTTTTCAATTTGATGGATTCTGGTGATGGACATAGTTCTAAGGAGGAAGTTGGTGTTGCTGGTGATATGAGGATTTTGCTTAATGGATCTAAGTTTGTTGGAAAGGAAAGTGTTCCTGAGGTGGTGAAAATTGTTAAAGTTCATGGGGTTATGAGGGAGAAAGCGAAATCGGTGCATTCGAGGATGCGGGTTGAGTTGAATTCGGGACATAAGTTGGGGAAATTGGATCTTGGGAGTGAGCATACTGTGTGTGATGTGTTGTTTCCTTTGGCAATGGCGTTGAGGGAATTGGGTGAGTGTAGTTTTGCTCGTGCCAAAAGTAATTTGTTGTCAATTGGTAGCGATGATTTGAAATCGGGTCTCGGTGAAATCTTTGGGAAGGAGTGTCCAACTGATGCTAGTTTGGTTAGTAGTTTTAATGAATCTTTTAAGTTGTATTCTGGTAGGGTTTATGATAATTTTGCACATGAAATCAATGTGTTGCTTGGGCTTGTGTGGAAAATTGTGGCGTGGGAACTTATGACTGCTTATGCTGTACTCGAGGCTGCTGATTTGAATGAAAAGATTGGAAATGTTCGGGAAAATGGAGAGAATAACAAAGTAGAAAAGAAGAAGAAGAAAGCTGTTTTGGGGAGAGGAACTAGTTCGATCTTGGCGTTGCTTAAGGAAAGGTTGTCGAGTGAAAAAAAGAGTGATGTAGAGAATTCGCGGAAATTGGAGAGTTGGGTTGCTGATTTTCTGTCGTTTTTGGATTTAGCTAAGCCTGAATTCAATGAATTTTTATTGAAAGTAAAGGATGTTGTTGAAAGCAATGAAAGCAGAAGATTGCCCAAGATCCCTAAGGGAACACGTGATTTCGCTAAAGAACAAATGACAATTAGAAAGAAAGCTTTTTCAGTAATAGAAGAAGTTTTTGAGAGGCATGGTGCCACAGCCTTGGATACACCTGTCTTTGAATTGCGAGAAACTCTTATGGGAAAATATGGAGAAGACTCAAAGTTGATTTATGATCTTGCTGATCAGGGTGGAGAGCTCTGTTCTTTGAGGTATGACTTGACAGTTCCATTTGCTAGATTTGTAGCTATGAATGGCCTGACATCTTTGAAAAGGTACCAAATAGCTAAAGTCTACAGAAGGGACAACCCATCTAAAGGAAGATACCGTGAATTTTATCAATGTGACTTTGATATTGCTGGTCCAGCTGAAAAAATGGCTCCAGATTTTGAGGTTGTTAGAATTTTGACTGAATTGCTTGATGAGCTGAATATTGGGGATTTTGAGGTAAAGTTGAATCATAGAAAGTTACTGGATGGCATGATGCAAATATGTGGAGTACCTCCTGAGAAGTTTAGAACTATATGCTCAAGTATTGACAAGTTAGACAAACAATCATTTGAACAGATAAGAAAAGAAATGGTGGAAGAGAAAGGATTAACTGCTGAGACAGCCGACAGAATTGGAACTTTTGTTAAAGAGAAAGGACATCCATTAACATTGTTATCGAAACTTAAACAAGAAGGCAGTGCTTTCTTAGAAAATGCTGGATCTGTTGATGCATTGAATGACCTGGAAATTTTGTTCAGAGCTCTGGATAAATCAAAACGCCTTGATAAGGTTGTATTTGACTTGAGTCTTGCCAGGGGTCTTGATTATTATACTGGAGTTATATTTGAAGCTGTTTTTAAAGGGGGTGCTCAGGTTGGTTCAATTGCTGCTGGTGGTCGATATGATAACCTGATAGGGATGTTTGGTTCGAAGCAAGTTCCAGCAGTTGGTGTAAGTCTGGGAATCGAGAGAGTATTTGCCATAATGGAGCAACAGCAGAAGGATCAGAACCAGATGGCTCGACCAACCAAGACAGAAGTCTTAGTGAGCATATTAGGGAATGATGTAACACTAGCTGGAGAGCTAGCTGGTGAACTGTGGGATGCTGGAGTTAAAGCAGAATTCTTGGTCAACAAAAGAAGACCAAAGCACTTTGACTATGCAAAAGAATCAAGAATCCCTTGGATGATACTTGTTGGTGAGCAGGAAATAAAAGAAGGCACGGTGCAACTGAAAAGCCTCGAGTCAGGTAATGATGTAAACATAAACATCCCTAGAGAAAATTTTGTTGAGGAACTTCGGAAACGGTTAAACCCATAA
Protein sequence

>Msa0163230

MELSAVTLGGKGSSLSSSTVYATAIRKSQIRIDSSALDRLTSPPSSKQNITIPEFLTLDETRAFLIVLLNKLILCSSSKNVALAISESLNSNQTSFRFDEEFDVTEDEHSLLMNNECAALLGVSAVLDHQSAGLLGFADVAAAFSCEALKADVTVFNLMDSGDGHSSKEEVGVAGDMRILLNGSKFVGKESVPEVVKIVKVHGVMREKAKSVHSRMRVELNSGHKLGKLDLGSEHTVCDVLFPLAMALRELGECSFARAKSNLLSIGSDDLKSGLGEIFGKECPTDASLVSSFNESFKLYSGRVYDNFAHEINVLLGLVWKIVAWELMTAYAVLEAADLNEKIGNVRENGENNKVEKKKKKAVLGRGTSSILALLKERLSSEKKSDVENSRKLESWVADFLSFLDLAKPEFNEFLLKVKDVVESNESRRLPKIPKGTRDFAKEQMTIRKKAFSVIEEVFERHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARFVAMNGLTSLKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGPAEKMAPDFEVVRILTELLDELNIGDFEVKLNHRKLLDGMMQICGVPPEKFRTICSSIDKLDKQSFEQIRKEMVEEKGLTAETADRIGTFVKEKGHPLTLLSKLKQEGSAFLENAGSVDALNDLEILFRALDKSKRLDKVVFDLSLARGLDYYTGVIFEAVFKGGAQVGSIAAGGRYDNLIGMFGSKQVPAVGVSLGIERVFAIMEQQQKDQNQMARPTKTEVLVSILGNDVTLAGELAGELWDAGVKAEFLVNKRRPKHFDYAKESRIPWMILVGEQEIKEGTVQLKSLESGNDVNINIPRENFVEELRKRLNP*