AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211160 MtrunA17_Chr2g0310311 100.000 67 0 0 1 67 1 67 8.50e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211160 AT3G12760.1 73.529 68 17 1 1 67 1 68 9.14e-29 102

Find 32 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCGATTGAGAAGGAAATT+AGG 0.215461 2_1:+52002657 None:intergenic
ATTCTTTGTGCAGCATAAAT+TGG 0.217465 2_1:-52001749 Msa0211160:intron
TGAGAAGGAAATTAGGGTTT+TGG 0.246137 2_1:+52002664 None:intergenic
CAGCAGTTCGTAACGATAAC+TGG 0.329636 2_1:-52001703 Msa0211160:CDS
TGCGATTGAGAAGGAAATTA+GGG 0.350432 2_1:+52002658 None:intergenic
TTCTTTGTGCAGCATAAATT+GGG 0.361871 2_1:-52001748 Msa0211160:intron
GGAAGAAACCCTAAAATCTA+TGG 0.364433 2_1:+52002623 None:intergenic
GAGCTATACAATAGATATAA+AGG 0.381421 2_1:-52000576 Msa0211160:CDS
GATATAAAGGTTAGCAATGA+AGG 0.417028 2_1:-52000563 Msa0211160:exon
CAGCGAGAAAGTGGCAATGC+AGG 0.455285 2_1:-52000694 Msa0211160:CDS
TAAATTGGGGAGAGGTCATC+GGG 0.477715 2_1:-52001734 Msa0211160:CDS
CTTCCACCTTTCTCAAACCA+TGG 0.478061 2_1:-52002605 Msa0211160:intron
CAGTTATCGTTACGAACTGC+TGG 0.487867 2_1:+52001704 None:intergenic
TTGAAAATTGTGAAGTGAGA+AGG 0.493981 2_1:+52002711 None:intergenic
GCCAGTGATTGGAATCTTGA+AGG 0.495038 2_1:-52000663 Msa0211160:CDS
TGTGAAGTGAGAAGGAATGA+AGG 0.496491 2_1:+52002719 None:intergenic
CTTCACTGATACTAGACACT+TGG 0.499772 2_1:-52000601 Msa0211160:CDS
AGTGGCAATGCAGGCTCTGA+AGG 0.501913 2_1:-52000685 Msa0211160:CDS
AGGCTCTGAAGGCCAGTGAT+TGG 0.504876 2_1:-52000674 Msa0211160:CDS
TCCTTCAAGATTCCAATCAC+TGG 0.510299 2_1:+52000662 None:intergenic
CACTGATACTAGACACTTGG+AGG 0.515960 2_1:-52000598 Msa0211160:CDS
AACTAACCATGGTTTGAGAA+AGG 0.535220 2_1:+52002599 None:intergenic
TGAAGGTTCTAAGCTGAGGC+TGG 0.538587 2_1:+52000619 None:intergenic
ATAAATTGGGGAGAGGTCAT+CGG 0.545004 2_1:-52001735 Msa0211160:CDS
GTGCAGCATAAATTGGGGAG+AGG 0.579013 2_1:-52001742 Msa0211160:intron
GTGAAGTGAGAAGGAATGAA+GGG 0.581508 2_1:+52002720 None:intergenic
TAACCATGGTTTGAGAAAGG+TGG 0.588906 2_1:+52002602 None:intergenic
GTGAAGATCTGCGATTGAGA+AGG 0.592865 2_1:+52002649 None:intergenic
TCTTTGTGCAGCATAAATTG+GGG 0.617535 2_1:-52001747 Msa0211160:intron
CAAGTGTCTAGTATCAGTGA+AGG 0.639701 2_1:+52000602 None:intergenic
TCAGTGAAGGTTCTAAGCTG+AGG 0.649173 2_1:+52000615 None:intergenic
TCGTAACGATAACTGGAGCG+AGG 0.712120 2_1:-52001696 Msa0211160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCTTATAAAAATTGATTAT+AGG - chr2_1:52001227-52001246 Msa0211160:intron 15.0%
!!! TTTATTTTATCTTTTACTAG+GGG + chr2_1:52001270-52001289 None:intergenic 15.0%
!!! CTTTATTTTATCTTTTACTA+GGG + chr2_1:52001271-52001290 None:intergenic 15.0%
!!! ACTTTATTTTATCTTTTACT+AGG + chr2_1:52001272-52001291 None:intergenic 15.0%
!!! AGTTTTTTTATAAGCTATTT+TGG - chr2_1:52001343-52001362 Msa0211160:intron 15.0%
!! TTAACAACAGAATTAAATAT+TGG - chr2_1:52001735-52001754 Msa0211160:CDS 15.0%
!! AGCTTATAAAAATTGATTAT+AGG - chr2_1:52001227-52001246 Msa0211160:intron 15.0%
!!! TTTATTTTATCTTTTACTAG+GGG + chr2_1:52001270-52001289 None:intergenic 15.0%
!!! CTTTATTTTATCTTTTACTA+GGG + chr2_1:52001271-52001290 None:intergenic 15.0%
!!! ACTTTATTTTATCTTTTACT+AGG + chr2_1:52001272-52001291 None:intergenic 15.0%
!!! AGTTTTTTTATAAGCTATTT+TGG - chr2_1:52001343-52001362 Msa0211160:intron 15.0%
!! TTAACAACAGAATTAAATAT+TGG - chr2_1:52001735-52001754 Msa0211160:CDS 15.0%
!! AAGAAAAATGATGTGAAAAA+AGG + chr2_1:52000750-52000769 None:intergenic 20.0%
!!! AATATTGTTAGGATTTTGTT+TGG - chr2_1:52000975-52000994 Msa0211160:intron 20.0%
!!! TGAAAAAAGTGTAAGAAAAA+TGG - chr2_1:52001385-52001404 Msa0211160:intron 20.0%
!! GGTATTTATTTACTTATTGA+TGG - chr2_1:52001805-52001824 Msa0211160:intron 20.0%
!! ATTTATTTACTTATTGATGG+TGG - chr2_1:52001808-52001827 Msa0211160:intron 20.0%
!!! ACAACATTTTGTAGTAAATA+GGG + chr2_1:52001983-52002002 None:intergenic 20.0%
!!! TAAGACTTTTGATATTATGT+TGG - chr2_1:52002137-52002156 Msa0211160:intron 20.0%
!! AAGAAAAATGATGTGAAAAA+AGG + chr2_1:52000750-52000769 None:intergenic 20.0%
!!! AATATTGTTAGGATTTTGTT+TGG - chr2_1:52000975-52000994 Msa0211160:intron 20.0%
!!! TGAAAAAAGTGTAAGAAAAA+TGG - chr2_1:52001385-52001404 Msa0211160:intron 20.0%
!! GGTATTTATTTACTTATTGA+TGG - chr2_1:52001805-52001824 Msa0211160:intron 20.0%
!! ATTTATTTACTTATTGATGG+TGG - chr2_1:52001808-52001827 Msa0211160:intron 20.0%
!!! ACAACATTTTGTAGTAAATA+GGG + chr2_1:52001983-52002002 None:intergenic 20.0%
!!! TAAGACTTTTGATATTATGT+TGG - chr2_1:52002137-52002156 Msa0211160:intron 20.0%
! TATAAGCTTATGTAAACTGT+GGG - chr2_1:52001053-52001072 Msa0211160:intron 25.0%
! CTAGTAGATAAGCTAAAATA+AGG + chr2_1:52001092-52001111 None:intergenic 25.0%
!!! TTTAACTTATAACCGCTTTT+AGG + chr2_1:52001204-52001223 None:intergenic 25.0%
! ACATCACTAACAATTACAAA+CGG + chr2_1:52001492-52001511 None:intergenic 25.0%
! TTACTTACACAATTTCTTAG+TGG - chr2_1:52001649-52001668 Msa0211160:intron 25.0%
!! GACAACATTTTGTAGTAAAT+AGG + chr2_1:52001984-52002003 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+CGG - chr2_1:52001990-52002009 Msa0211160:intron 25.0%
! TTGAAAGCTTTCATAAGATT+TGG - chr2_1:52002164-52002183 Msa0211160:intron 25.0%
! TGAAAGCTTTCATAAGATTT+GGG - chr2_1:52002165-52002184 Msa0211160:intron 25.0%
! GTGAAAAAGTTATCAAATAG+CGG - chr2_1:52002341-52002360 Msa0211160:intron 25.0%
! ACATGACTGATATAGAAAAT+AGG + chr2_1:52002445-52002464 None:intergenic 25.0%
!! ATATCAGTCATGTTTAACTT+TGG - chr2_1:52002452-52002471 Msa0211160:intron 25.0%
!! GTTGATTGTGAATTTTACTT+TGG - chr2_1:52002482-52002501 Msa0211160:intron 25.0%
! GAGCTATACAATAGATATAA+AGG - chr2_1:52002722-52002741 Msa0211160:five_prime_UTR 25.0%
! TATAAGCTTATGTAAACTGT+GGG - chr2_1:52001053-52001072 Msa0211160:intron 25.0%
! CTAGTAGATAAGCTAAAATA+AGG + chr2_1:52001092-52001111 None:intergenic 25.0%
!!! TTTAACTTATAACCGCTTTT+AGG + chr2_1:52001204-52001223 None:intergenic 25.0%
! ACATCACTAACAATTACAAA+CGG + chr2_1:52001492-52001511 None:intergenic 25.0%
! TTACTTACACAATTTCTTAG+TGG - chr2_1:52001649-52001668 Msa0211160:intron 25.0%
!! GACAACATTTTGTAGTAAAT+AGG + chr2_1:52001984-52002003 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+CGG - chr2_1:52001990-52002009 Msa0211160:intron 25.0%
! TTGAAAGCTTTCATAAGATT+TGG - chr2_1:52002164-52002183 Msa0211160:intron 25.0%
! TGAAAGCTTTCATAAGATTT+GGG - chr2_1:52002165-52002184 Msa0211160:intron 25.0%
! GTGAAAAAGTTATCAAATAG+CGG - chr2_1:52002341-52002360 Msa0211160:intron 25.0%
! ACATGACTGATATAGAAAAT+AGG + chr2_1:52002445-52002464 None:intergenic 25.0%
!! ATATCAGTCATGTTTAACTT+TGG - chr2_1:52002452-52002471 Msa0211160:intron 25.0%
!! GTTGATTGTGAATTTTACTT+TGG - chr2_1:52002482-52002501 Msa0211160:intron 25.0%
! GAGCTATACAATAGATATAA+AGG - chr2_1:52002722-52002741 Msa0211160:five_prime_UTR 25.0%
! TTTTTGAACAGTGTAAAGTG+TGG + chr2_1:52000551-52000570 None:intergenic 30.0%
TTGAAAATTGTGAAGTGAGA+AGG + chr2_1:52000590-52000609 None:intergenic 30.0%
!!! TTTTGGGATGAAATGGAATT+TGG + chr2_1:52000620-52000639 None:intergenic 30.0%
! TTCACTCTCCATAGATTTTA+GGG - chr2_1:52000667-52000686 Msa0211160:CDS 30.0%
TGTGAAAAAAGGTGAATCAT+CGG + chr2_1:52000739-52000758 None:intergenic 30.0%
! AGTGAGCTTTAATGATTTGT+CGG - chr2_1:52000941-52000960 Msa0211160:intron 30.0%
GTATAAGCTTATGTAAACTG+TGG - chr2_1:52001052-52001071 Msa0211160:intron 30.0%
!!! CTGTTTGAGACATGTTTTTT+CGG - chr2_1:52001134-52001153 Msa0211160:intron 30.0%
GAACTTATGACCTATAATTG+AGG - chr2_1:52001164-52001183 Msa0211160:intron 30.0%
ATGACCTATAATTGAGGATT+TGG - chr2_1:52001170-52001189 Msa0211160:intron 30.0%
! ATAAGCTTTGTGATACTGTT+TGG + chr2_1:52001435-52001454 None:intergenic 30.0%
AAACAGTATCACAAAGCTTA+TGG - chr2_1:52001434-52001453 Msa0211160:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr2_1:52001466-52001485 Msa0211160:intron 30.0%
ATTCTTTGTGCAGCATAAAT+TGG - chr2_1:52001549-52001568 Msa0211160:intron 30.0%
TTCTTTGTGCAGCATAAATT+GGG - chr2_1:52001550-52001569 Msa0211160:intron 30.0%
TTACACAATTTCTTAGTGGA+TGG - chr2_1:52001653-52001672 Msa0211160:intron 30.0%
CAACACATACAAAACCAAAA+GGG + chr2_1:52001786-52001805 None:intergenic 30.0%
GCTATATAACTATTGCTTAG+TGG - chr2_1:52002021-52002040 Msa0211160:intron 30.0%
GATATAAAGGTTAGCAATGA+AGG - chr2_1:52002735-52002754 Msa0211160:five_prime_UTR 30.0%
! TTTTGAACAGTGTAAAGTGT+GGG + chr2_1:52000550-52000569 None:intergenic 30.0%
! TTTTTGAACAGTGTAAAGTG+TGG + chr2_1:52000551-52000570 None:intergenic 30.0%
TTGAAAATTGTGAAGTGAGA+AGG + chr2_1:52000590-52000609 None:intergenic 30.0%
!!! TTTTGGGATGAAATGGAATT+TGG + chr2_1:52000620-52000639 None:intergenic 30.0%
! TTCACTCTCCATAGATTTTA+GGG - chr2_1:52000667-52000686 Msa0211160:CDS 30.0%
TGTGAAAAAAGGTGAATCAT+CGG + chr2_1:52000739-52000758 None:intergenic 30.0%
! AGTGAGCTTTAATGATTTGT+CGG - chr2_1:52000941-52000960 Msa0211160:intron 30.0%
GTATAAGCTTATGTAAACTG+TGG - chr2_1:52001052-52001071 Msa0211160:intron 30.0%
!!! CTGTTTGAGACATGTTTTTT+CGG - chr2_1:52001134-52001153 Msa0211160:intron 30.0%
GAACTTATGACCTATAATTG+AGG - chr2_1:52001164-52001183 Msa0211160:intron 30.0%
ATGACCTATAATTGAGGATT+TGG - chr2_1:52001170-52001189 Msa0211160:intron 30.0%
! ATAAGCTTTGTGATACTGTT+TGG + chr2_1:52001435-52001454 None:intergenic 30.0%
AAACAGTATCACAAAGCTTA+TGG - chr2_1:52001434-52001453 Msa0211160:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr2_1:52001466-52001485 Msa0211160:intron 30.0%
ATTCTTTGTGCAGCATAAAT+TGG - chr2_1:52001549-52001568 Msa0211160:intron 30.0%
TTCTTTGTGCAGCATAAATT+GGG - chr2_1:52001550-52001569 Msa0211160:intron 30.0%
TTACACAATTTCTTAGTGGA+TGG - chr2_1:52001653-52001672 Msa0211160:intron 30.0%
CAACACATACAAAACCAAAA+GGG + chr2_1:52001786-52001805 None:intergenic 30.0%
GCTATATAACTATTGCTTAG+TGG - chr2_1:52002021-52002040 Msa0211160:intron 30.0%
GATATAAAGGTTAGCAATGA+AGG - chr2_1:52002735-52002754 Msa0211160:five_prime_UTR 30.0%
!!! ATTAGGGTTTTGGGATGAAA+TGG + chr2_1:52000627-52000646 None:intergenic 35.0%
! GAGAAGGAAATTAGGGTTTT+GGG + chr2_1:52000636-52000655 None:intergenic 35.0%
! TGAGAAGGAAATTAGGGTTT+TGG + chr2_1:52000637-52000656 None:intergenic 35.0%
TGCGATTGAGAAGGAAATTA+GGG + chr2_1:52000643-52000662 None:intergenic 35.0%
! CTTCACTCTCCATAGATTTT+AGG - chr2_1:52000666-52000685 Msa0211160:CDS 35.0%
GGAAGAAACCCTAAAATCTA+TGG + chr2_1:52000678-52000697 None:intergenic 35.0%
AACTAACCATGGTTTGAGAA+AGG + chr2_1:52000702-52000721 None:intergenic 35.0%
! TGGCGGATGTTAATATTGTT+AGG - chr2_1:52000964-52000983 Msa0211160:intron 35.0%
TAGTACTAGCATAAGCTTTG+TGG - chr2_1:52001109-52001128 Msa0211160:intron 35.0%
!!! GAGACATGTTTTTTCGGTAT+TGG - chr2_1:52001140-52001159 Msa0211160:intron 35.0%
ACTGCCAAATCCTCAATTAT+AGG + chr2_1:52001177-52001196 None:intergenic 35.0%
TTGGCAGTTATACCTAAAAG+CGG - chr2_1:52001189-52001208 Msa0211160:intron 35.0%
! TCTTTTACTAGGGGAATATC+TGG + chr2_1:52001261-52001280 None:intergenic 35.0%
TCTTTGTGCAGCATAAATTG+GGG - chr2_1:52001551-52001570 Msa0211160:intron 35.0%
! AACAAAATTAGACGCCCTTT+TGG - chr2_1:52001769-52001788 Msa0211160:intron 35.0%
CCAACACATACAAAACCAAA+AGG + chr2_1:52001787-52001806 None:intergenic 35.0%
!!! CCTTTTGGTTTTGTATGTGT+TGG - chr2_1:52001784-52001803 Msa0211160:intron 35.0%
GGGAATCTTTGTGTTAATCT+TGG - chr2_1:52001849-52001868 Msa0211160:intron 35.0%
ATGATCAGAAACATACACAC+AGG + chr2_1:52001883-52001902 None:intergenic 35.0%
! TATCCCGCTACAGTATTTTT+GGG - chr2_1:52002380-52002399 Msa0211160:intron 35.0%
AATAGGACAGTAGTCAATTG+CGG + chr2_1:52002428-52002447 None:intergenic 35.0%
! TTGTATTTTCAGCGAGAAAG+TGG - chr2_1:52002595-52002614 Msa0211160:intron 35.0%
!!! ATTAGGGTTTTGGGATGAAA+TGG + chr2_1:52000627-52000646 None:intergenic 35.0%
! GAGAAGGAAATTAGGGTTTT+GGG + chr2_1:52000636-52000655 None:intergenic 35.0%
! TGAGAAGGAAATTAGGGTTT+TGG + chr2_1:52000637-52000656 None:intergenic 35.0%
TGCGATTGAGAAGGAAATTA+GGG + chr2_1:52000643-52000662 None:intergenic 35.0%
! CTTCACTCTCCATAGATTTT+AGG - chr2_1:52000666-52000685 Msa0211160:CDS 35.0%
GGAAGAAACCCTAAAATCTA+TGG + chr2_1:52000678-52000697 None:intergenic 35.0%
AACTAACCATGGTTTGAGAA+AGG + chr2_1:52000702-52000721 None:intergenic 35.0%
! TGGCGGATGTTAATATTGTT+AGG - chr2_1:52000964-52000983 Msa0211160:intron 35.0%
TAGTACTAGCATAAGCTTTG+TGG - chr2_1:52001109-52001128 Msa0211160:intron 35.0%
!!! GAGACATGTTTTTTCGGTAT+TGG - chr2_1:52001140-52001159 Msa0211160:intron 35.0%
ACTGCCAAATCCTCAATTAT+AGG + chr2_1:52001177-52001196 None:intergenic 35.0%
TTGGCAGTTATACCTAAAAG+CGG - chr2_1:52001189-52001208 Msa0211160:intron 35.0%
! TCTTTTACTAGGGGAATATC+TGG + chr2_1:52001261-52001280 None:intergenic 35.0%
TCTTTGTGCAGCATAAATTG+GGG - chr2_1:52001551-52001570 Msa0211160:intron 35.0%
! AACAAAATTAGACGCCCTTT+TGG - chr2_1:52001769-52001788 Msa0211160:intron 35.0%
CCAACACATACAAAACCAAA+AGG + chr2_1:52001787-52001806 None:intergenic 35.0%
!!! CCTTTTGGTTTTGTATGTGT+TGG - chr2_1:52001784-52001803 Msa0211160:intron 35.0%
GGGAATCTTTGTGTTAATCT+TGG - chr2_1:52001849-52001868 Msa0211160:intron 35.0%
ATGATCAGAAACATACACAC+AGG + chr2_1:52001883-52001902 None:intergenic 35.0%
! TATCCCGCTACAGTATTTTT+GGG - chr2_1:52002380-52002399 Msa0211160:intron 35.0%
AATAGGACAGTAGTCAATTG+CGG + chr2_1:52002428-52002447 None:intergenic 35.0%
! TTGTATTTTCAGCGAGAAAG+TGG - chr2_1:52002595-52002614 Msa0211160:intron 35.0%
GTGAAGTGAGAAGGAATGAA+GGG + chr2_1:52000581-52000600 None:intergenic 40.0%
TGTGAAGTGAGAAGGAATGA+AGG + chr2_1:52000582-52000601 None:intergenic 40.0%
CTGCGATTGAGAAGGAAATT+AGG + chr2_1:52000644-52000663 None:intergenic 40.0%
TAACCATGGTTTGAGAAAGG+TGG + chr2_1:52000699-52000718 None:intergenic 40.0%
GAAAGGTGAAGAACTAACCA+TGG + chr2_1:52000713-52000732 None:intergenic 40.0%
! GAGCTTTAATGATTTGTCGG+TGG - chr2_1:52000944-52000963 Msa0211160:intron 40.0%
! CTTTAATGATTTGTCGGTGG+CGG - chr2_1:52000947-52000966 Msa0211160:intron 40.0%
ATGTAAACTGTGGGTCTGTT+TGG - chr2_1:52001062-52001081 Msa0211160:intron 40.0%
ACAATTACAAACGGCCTGTT+TGG + chr2_1:52001483-52001502 None:intergenic 40.0%
ATAAATTGGGGAGAGGTCAT+CGG - chr2_1:52001563-52001582 Msa0211160:intron 40.0%
!! TACTTATTGATGGTGGACAC+TGG - chr2_1:52001815-52001834 Msa0211160:intron 40.0%
!! ACTTATTGATGGTGGACACT+GGG - chr2_1:52001816-52001835 Msa0211160:intron 40.0%
AGAATTCCGCTATGCTTTAG+CGG + chr2_1:52001936-52001955 None:intergenic 40.0%
TAGGGTATAGCAAACAGTAG+CGG + chr2_1:52001965-52001984 None:intergenic 40.0%
TGATCCAGTGTTGTCAATTG+CGG + chr2_1:52002076-52002095 None:intergenic 40.0%
! CTATCCCGCTACAGTATTTT+TGG - chr2_1:52002379-52002398 Msa0211160:intron 40.0%
!! ATCCCGCTACAGTATTTTTG+GGG - chr2_1:52002381-52002400 Msa0211160:intron 40.0%
CATATTGACAGCAGCAGTTT+AGG + chr2_1:52002564-52002583 None:intergenic 40.0%
TCCTTCAAGATTCCAATCAC+TGG + chr2_1:52002639-52002658 None:intergenic 40.0%
CAAGTGTCTAGTATCAGTGA+AGG + chr2_1:52002699-52002718 None:intergenic 40.0%
CTTCACTGATACTAGACACT+TGG - chr2_1:52002697-52002716 Msa0211160:five_prime_UTR 40.0%
GTGAAGTGAGAAGGAATGAA+GGG + chr2_1:52000581-52000600 None:intergenic 40.0%
TGTGAAGTGAGAAGGAATGA+AGG + chr2_1:52000582-52000601 None:intergenic 40.0%
CTGCGATTGAGAAGGAAATT+AGG + chr2_1:52000644-52000663 None:intergenic 40.0%
TAACCATGGTTTGAGAAAGG+TGG + chr2_1:52000699-52000718 None:intergenic 40.0%
GAAAGGTGAAGAACTAACCA+TGG + chr2_1:52000713-52000732 None:intergenic 40.0%
! GAGCTTTAATGATTTGTCGG+TGG - chr2_1:52000944-52000963 Msa0211160:intron 40.0%
! CTTTAATGATTTGTCGGTGG+CGG - chr2_1:52000947-52000966 Msa0211160:intron 40.0%
ATGTAAACTGTGGGTCTGTT+TGG - chr2_1:52001062-52001081 Msa0211160:intron 40.0%
ACAATTACAAACGGCCTGTT+TGG + chr2_1:52001483-52001502 None:intergenic 40.0%
ATAAATTGGGGAGAGGTCAT+CGG - chr2_1:52001563-52001582 Msa0211160:intron 40.0%
!! TACTTATTGATGGTGGACAC+TGG - chr2_1:52001815-52001834 Msa0211160:intron 40.0%
!! ACTTATTGATGGTGGACACT+GGG - chr2_1:52001816-52001835 Msa0211160:intron 40.0%
AGAATTCCGCTATGCTTTAG+CGG + chr2_1:52001936-52001955 None:intergenic 40.0%
TAGGGTATAGCAAACAGTAG+CGG + chr2_1:52001965-52001984 None:intergenic 40.0%
TGATCCAGTGTTGTCAATTG+CGG + chr2_1:52002076-52002095 None:intergenic 40.0%
! CTATCCCGCTACAGTATTTT+TGG - chr2_1:52002379-52002398 Msa0211160:intron 40.0%
!! ATCCCGCTACAGTATTTTTG+GGG - chr2_1:52002381-52002400 Msa0211160:intron 40.0%
CATATTGACAGCAGCAGTTT+AGG + chr2_1:52002564-52002583 None:intergenic 40.0%
TCCTTCAAGATTCCAATCAC+TGG + chr2_1:52002639-52002658 None:intergenic 40.0%
CAAGTGTCTAGTATCAGTGA+AGG + chr2_1:52002699-52002718 None:intergenic 40.0%
CTTCACTGATACTAGACACT+TGG - chr2_1:52002697-52002716 Msa0211160:five_prime_UTR 40.0%
GTGAAGATCTGCGATTGAGA+AGG + chr2_1:52000652-52000671 None:intergenic 45.0%
CTTCCACCTTTCTCAAACCA+TGG - chr2_1:52000693-52000712 Msa0211160:CDS 45.0%
AGGTGAATCATCGGAACGAA+AGG + chr2_1:52000730-52000749 None:intergenic 45.0%
TAAATTGGGGAGAGGTCATC+GGG - chr2_1:52001564-52001583 Msa0211160:intron 45.0%
CAGTTATCGTTACGAACTGC+TGG + chr2_1:52001597-52001616 None:intergenic 45.0%
CAGCAGTTCGTAACGATAAC+TGG - chr2_1:52001595-52001614 Msa0211160:intron 45.0%
!! CTTATTGATGGTGGACACTG+GGG - chr2_1:52001817-52001836 Msa0211160:intron 45.0%
TATGCTTTAGCGGTATAGCG+CGG + chr2_1:52001926-52001945 None:intergenic 45.0%
GCTATACCGCTAAAGCATAG+CGG - chr2_1:52001927-52001946 Msa0211160:intron 45.0%
! GCTAAAGCATAGCGGAATTC+TGG - chr2_1:52001935-52001954 Msa0211160:intron 45.0%
GTATAGCAAACAGTAGCGGT+TGG + chr2_1:52001961-52001980 None:intergenic 45.0%
TGTTGTCAAATAGCGGCTAG+TGG - chr2_1:52001997-52002016 Msa0211160:intron 45.0%
GTTGTCAAATAGCGGCTAGT+GGG - chr2_1:52001998-52002017 Msa0211160:intron 45.0%
TTGTCAAATAGCGGCTAGTG+GGG - chr2_1:52001999-52002018 Msa0211160:intron 45.0%
GTGTTGTCAATTGCGGATAG+CGG + chr2_1:52002069-52002088 None:intergenic 45.0%
CTATCCGCAATTGACAACAC+TGG - chr2_1:52002069-52002088 Msa0211160:intron 45.0%
GACCCCAAAAATACTGTAGC+GGG + chr2_1:52002386-52002405 None:intergenic 45.0%
CGACCCCAAAAATACTGTAG+CGG + chr2_1:52002387-52002406 None:intergenic 45.0%
!!! CGCTACAGTATTTTTGGGGT+CGG - chr2_1:52002385-52002404 Msa0211160:intron 45.0%
CAGTAGTCAATTGCGGATAG+CGG + chr2_1:52002421-52002440 None:intergenic 45.0%
GCCAGTGATTGGAATCTTGA+AGG - chr2_1:52002635-52002654 Msa0211160:five_prime_UTR 45.0%
!! TCAGTGAAGGTTCTAAGCTG+AGG + chr2_1:52002686-52002705 None:intergenic 45.0%
CACTGATACTAGACACTTGG+AGG - chr2_1:52002700-52002719 Msa0211160:five_prime_UTR 45.0%
GTGAAGATCTGCGATTGAGA+AGG + chr2_1:52000652-52000671 None:intergenic 45.0%
CTTCCACCTTTCTCAAACCA+TGG - chr2_1:52000693-52000712 Msa0211160:CDS 45.0%
AGGTGAATCATCGGAACGAA+AGG + chr2_1:52000730-52000749 None:intergenic 45.0%
TAAATTGGGGAGAGGTCATC+GGG - chr2_1:52001564-52001583 Msa0211160:intron 45.0%
CAGTTATCGTTACGAACTGC+TGG + chr2_1:52001597-52001616 None:intergenic 45.0%
CAGCAGTTCGTAACGATAAC+TGG - chr2_1:52001595-52001614 Msa0211160:intron 45.0%
!! CTTATTGATGGTGGACACTG+GGG - chr2_1:52001817-52001836 Msa0211160:intron 45.0%
TATGCTTTAGCGGTATAGCG+CGG + chr2_1:52001926-52001945 None:intergenic 45.0%
GCTATACCGCTAAAGCATAG+CGG - chr2_1:52001927-52001946 Msa0211160:intron 45.0%
! GCTAAAGCATAGCGGAATTC+TGG - chr2_1:52001935-52001954 Msa0211160:intron 45.0%
GTATAGCAAACAGTAGCGGT+TGG + chr2_1:52001961-52001980 None:intergenic 45.0%
TGTTGTCAAATAGCGGCTAG+TGG - chr2_1:52001997-52002016 Msa0211160:intron 45.0%
GTTGTCAAATAGCGGCTAGT+GGG - chr2_1:52001998-52002017 Msa0211160:intron 45.0%
TTGTCAAATAGCGGCTAGTG+GGG - chr2_1:52001999-52002018 Msa0211160:intron 45.0%
GTGTTGTCAATTGCGGATAG+CGG + chr2_1:52002069-52002088 None:intergenic 45.0%
CTATCCGCAATTGACAACAC+TGG - chr2_1:52002069-52002088 Msa0211160:intron 45.0%
GACCCCAAAAATACTGTAGC+GGG + chr2_1:52002386-52002405 None:intergenic 45.0%
CGACCCCAAAAATACTGTAG+CGG + chr2_1:52002387-52002406 None:intergenic 45.0%
!!! CGCTACAGTATTTTTGGGGT+CGG - chr2_1:52002385-52002404 Msa0211160:intron 45.0%
CAGTAGTCAATTGCGGATAG+CGG + chr2_1:52002421-52002440 None:intergenic 45.0%
GCCAGTGATTGGAATCTTGA+AGG - chr2_1:52002635-52002654 Msa0211160:five_prime_UTR 45.0%
!! TCAGTGAAGGTTCTAAGCTG+AGG + chr2_1:52002686-52002705 None:intergenic 45.0%
CACTGATACTAGACACTTGG+AGG - chr2_1:52002700-52002719 Msa0211160:five_prime_UTR 45.0%
GTGCAGCATAAATTGGGGAG+AGG - chr2_1:52001556-52001575 Msa0211160:intron 50.0%
TCGTAACGATAACTGGAGCG+AGG - chr2_1:52001602-52001621 Msa0211160:intron 50.0%
!! TGAAGGTTCTAAGCTGAGGC+TGG + chr2_1:52002682-52002701 None:intergenic 50.0%
GTGCAGCATAAATTGGGGAG+AGG - chr2_1:52001556-52001575 Msa0211160:intron 50.0%
TCGTAACGATAACTGGAGCG+AGG - chr2_1:52001602-52001621 Msa0211160:intron 50.0%
!! TGAAGGTTCTAAGCTGAGGC+TGG + chr2_1:52002682-52002701 None:intergenic 50.0%
!! ATTGATGGTGGACACTGGGG+AGG - chr2_1:52001820-52001839 Msa0211160:intron 55.0%
!! TTGATGGTGGACACTGGGGA+GGG - chr2_1:52001821-52001840 Msa0211160:intron 55.0%
CAGCGAGAAAGTGGCAATGC+AGG - chr2_1:52002604-52002623 Msa0211160:intron 55.0%
! AGTGGCAATGCAGGCTCTGA+AGG - chr2_1:52002613-52002632 Msa0211160:five_prime_UTR 55.0%
!! AGGCTCTGAAGGCCAGTGAT+TGG - chr2_1:52002624-52002643 Msa0211160:five_prime_UTR 55.0%
!! ATTGATGGTGGACACTGGGG+AGG - chr2_1:52001820-52001839 Msa0211160:intron 55.0%
!! TTGATGGTGGACACTGGGGA+GGG - chr2_1:52001821-52001840 Msa0211160:intron 55.0%
CAGCGAGAAAGTGGCAATGC+AGG - chr2_1:52002604-52002623 Msa0211160:intron 55.0%
! AGTGGCAATGCAGGCTCTGA+AGG - chr2_1:52002613-52002632 Msa0211160:five_prime_UTR 55.0%
!! AGGCTCTGAAGGCCAGTGAT+TGG - chr2_1:52002624-52002643 Msa0211160:five_prime_UTR 55.0%
!! TGATGGTGGACACTGGGGAG+GGG - chr2_1:52001822-52001841 Msa0211160:intron 60.0%
!! TGATGGTGGACACTGGGGAG+GGG - chr2_1:52001822-52001841 Msa0211160:intron 60.0%
TGGACACTGGGGAGGGGAGA+GGG - chr2_1:52001828-52001847 Msa0211160:intron 65.0%
! TTGCGGATAGCGGCGCGTAG+CGG + chr2_1:52002411-52002430 None:intergenic 65.0%
TGGACACTGGGGAGGGGAGA+GGG - chr2_1:52001828-52001847 Msa0211160:intron 65.0%
! TTGCGGATAGCGGCGCGTAG+CGG + chr2_1:52002411-52002430 None:intergenic 65.0%
GTGGACACTGGGGAGGGGAG+AGG - chr2_1:52001827-52001846 Msa0211160:intron 70.0%
GGACACTGGGGAGGGGAGAG+GGG - chr2_1:52001829-52001848 Msa0211160:intron 70.0%
GTGGACACTGGGGAGGGGAG+AGG - chr2_1:52001827-52001846 Msa0211160:intron 70.0%
GGACACTGGGGAGGGGAGAG+GGG - chr2_1:52001829-52001848 Msa0211160:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 52000548 52002772 52000548 ID=Msa0211160;Name=Msa0211160
chr2_1 mRNA 52000548 52002772 52000548 ID=Msa0211160-mRNA-1;Parent=Msa0211160;Name=Msa0211160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=164|1|1|1|1|1|3|24|68
chr2_1 exon 52000548 52000713 52000548 ID=Msa0211160-mRNA-1:exon:14463;Parent=Msa0211160-mRNA-1
chr2_1 exon 52001697 52001758 52001697 ID=Msa0211160-mRNA-1:exon:14462;Parent=Msa0211160-mRNA-1
chr2_1 exon 52002606 52002772 52002606 ID=Msa0211160-mRNA-1:exon:14461;Parent=Msa0211160-mRNA-1
chr2_1 five_prime_UTR 52002609 52002772 52002609 ID=Msa0211160-mRNA-1:five_prime_utr;Parent=Msa0211160-mRNA-1
chr2_1 CDS 52002606 52002608 52002606 ID=Msa0211160-mRNA-1:cds;Parent=Msa0211160-mRNA-1
chr2_1 CDS 52001697 52001758 52001697 ID=Msa0211160-mRNA-1:cds;Parent=Msa0211160-mRNA-1
chr2_1 CDS 52000572 52000713 52000572 ID=Msa0211160-mRNA-1:cds;Parent=Msa0211160-mRNA-1
chr2_1 three_prime_UTR 52000548 52000571 52000548 ID=Msa0211160-mRNA-1:three_prime_utr;Parent=Msa0211160-mRNA-1
Gene Sequence

>Msa0211160

ATGCATAAATTGGGGAGAGGTCATCGGGATAAAGTCCAGCAGTTCGTAACGATAACTGGAGCGAGCGAGAAAGTGGCAATGCAGGCTCTGAAGGCCAGTGATTGGAATCTTGAAGGAGCATTTGATTATTTTTACAGCCAGCCTCAGCTTAGAACCTTCACTGATACTAGACACTTGGAGGAGCTATACAATAGATATAAAGGTTAG

Protein sequence

>Msa0211160

MHKLGRGHRDKVQQFVTITGASEKVAMQALKASDWNLEGAFDYFYSQPQLRTFTDTRHLEELYNRYKG*