AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713320 MtrunA17_Chr5g0399831 98.272 984 17 0 1 984 1 984 0.0 1996
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713320 AT5G41150.1 66.230 992 291 9 1 984 1 956 0.0 1284
Msa0713320 AT5G41150.3 65.439 923 275 9 1 915 1 887 0.0 1161
Msa0713320 AT5G41150.2 61.740 724 233 10 1 716 1 688 0.0 826
Msa0713320 AT5G41150.4 61.740 724 233 10 1 716 1 688 0.0 826

Find 246 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCCTCAGGCGATGGTTTC+TGG 0.039215 5_1:+5477920 Msa0713320:CDS
CAGTCGGGATTTGGTGGTTT+TGG 0.087312 5_1:-5477658 None:intergenic
TTTGAGATGGAAATTGATTT+TGG 0.169113 5_1:-5477624 None:intergenic
CACCGGATGTGGTGGATATT+AGG 0.180382 5_1:+5478044 Msa0713320:CDS
GGATAAGAGCTTCTCATTTC+AGG 0.182092 5_1:+5482303 Msa0713320:CDS
TTCCTTTCCACGCAAATTAA+TGG 0.186365 5_1:-5482172 None:intergenic
TGTATTCTGTCCAAGGGATA+TGG 0.222718 5_1:-5480979 None:intergenic
GGTGACTTACTTGAAATATT+TGG 0.224245 5_1:+5478908 Msa0713320:CDS
CCAAAGGATCCTAAGGGTTT+TGG 0.230872 5_1:+5480936 Msa0713320:CDS
ACATTTATGGCCGAGATTTC+AGG 0.231804 5_1:+5477991 Msa0713320:CDS
GATCCAATTTGGCATACTTT+AGG 0.235008 5_1:+5478229 Msa0713320:CDS
TTCCCTAAAGTATGCCAAAT+TGG 0.239779 5_1:-5478232 None:intergenic
GTGTTACAGATTCTAATTAT+AGG 0.253075 5_1:+5483448 Msa0713320:CDS
GGTTACGGAAGTTACATTTA+TGG 0.258472 5_1:+5477978 Msa0713320:CDS
CAACTTTGATATAATGCTAT+TGG 0.284544 5_1:-5482752 None:intergenic
CGTGGAAAGGAAAAGTATTC+AGG 0.296025 5_1:+5482183 Msa0713320:CDS
TGGAAAAGGCAAGAGAAAAT+TGG 0.303152 5_1:+5481130 Msa0713320:CDS
GAATCCCTCTAAAAGGTTAA+AGG 0.308417 5_1:+5481517 Msa0713320:CDS
TAGCATCTAGAAAGTCTCTA+AGG 0.318207 5_1:-5483566 None:intergenic
AGATACCCCTCAGTCTGATT+TGG 0.321552 5_1:+5481094 Msa0713320:CDS
GAGAGGACGATGAAGTGTTT+AGG 0.322791 5_1:+5477956 Msa0713320:CDS
ATCCAATTTGGCATACTTTA+GGG 0.326230 5_1:+5478230 Msa0713320:CDS
CGGTGATTTCAGTCGGGATT+TGG 0.329036 5_1:-5477667 None:intergenic
TACCAGTCTGCCAGTGATAT+TGG 0.329348 5_1:+5482715 Msa0713320:intron
AGAAAAGCTAGCTGAAATAA+TGG 0.331086 5_1:+5483521 Msa0713320:CDS
TCCAAATATTCTTCATCAAA+AGG 0.334364 5_1:+5482099 Msa0713320:CDS
ACCGGATGTGGTGGATATTA+GGG 0.338897 5_1:+5478045 Msa0713320:CDS
TATCAGAGTGGGCGTGGTTT+AGG 0.339599 5_1:+5481855 Msa0713320:intron
AAGCTGAGAATCCCTCTAAA+AGG 0.342926 5_1:+5481510 Msa0713320:CDS
CCAAAACCCTTAGGATCCTT+TGG 0.343817 5_1:-5480936 None:intergenic
AGAGGACGATGAAGTGTTTA+GGG 0.345932 5_1:+5477957 Msa0713320:CDS
GCAGGAGCATGATGCACTTC+TGG 0.348700 5_1:+5481022 Msa0713320:CDS
TGTTACAGATTCTAATTATA+GGG 0.349584 5_1:+5483449 Msa0713320:CDS
AACTTTGATATAATGCTATT+GGG 0.350549 5_1:-5482751 None:intergenic
AAAAGCTTCGGTGGAAGTTT+CGG 0.357591 5_1:-5477840 None:intergenic
AGAGATGAGGAAGACGAATA+AGG 0.361182 5_1:+5478135 Msa0713320:CDS
CTGCATCAATATATCATCAT+TGG 0.362339 5_1:+5483679 Msa0713320:three_prime_UTR
TAGTATTTAAATCTGAATCT+AGG 0.363787 5_1:-5481890 None:intergenic
TGAAAGTGATCAGCCTATAC+TGG 0.367474 5_1:+5481415 Msa0713320:CDS
GTAAAACAAACCTGGTCAAT+TGG 0.376126 5_1:-5481653 None:intergenic
GGAAAAGGCAAGAGAAAATT+GGG 0.376193 5_1:+5481131 Msa0713320:CDS
GAAAGCGATTGTTGAAGTTA+TGG 0.378027 5_1:+5478099 Msa0713320:CDS
GAAGTGGCAAGTGGTAAAAC+TGG 0.379166 5_1:+5481212 Msa0713320:CDS
TTCTAATTATAGGGCCATAA+TGG 0.379915 5_1:+5483458 Msa0713320:CDS
CCATCTCTTGCCATGGCATC+AGG 0.379982 5_1:-5481359 None:intergenic
AGACAATTCATTTGTCGAAA+TGG 0.381307 5_1:+5483617 Msa0713320:three_prime_UTR
GAACCATTGATGAATAATAA+TGG 0.385614 5_1:-5477433 None:intergenic
GGAGACAGTTGGATCCAATT+TGG 0.389564 5_1:+5478218 Msa0713320:CDS
AATGGATGGGTGTAAAAGTT+TGG 0.391473 5_1:+5483476 Msa0713320:CDS
CCACGCAAATTAATGGTGAT+AGG 0.403076 5_1:-5482165 None:intergenic
CGATGAAGTGTTTAGGGTTA+CGG 0.407072 5_1:+5477963 Msa0713320:CDS
GAGAGAGTGACGGTGGTTAA+CGG 0.411126 5_1:-5477699 None:intergenic
GAGTTTCTAAGACGACTTCC+TGG 0.412129 5_1:+5483426 Msa0713320:CDS
GGTGGACATGTTCGTGGAAA+AGG 0.414905 5_1:+5481116 Msa0713320:CDS
AGAAAATTGGGGAATAGAAA+TGG 0.415060 5_1:+5481143 Msa0713320:CDS
GAAAAGCTAGCTGAAATAAT+GGG 0.415675 5_1:+5483522 Msa0713320:CDS
GATACCCCTCAGTCTGATTT+GGG 0.419551 5_1:+5481095 Msa0713320:CDS
TAAGACGTTGAGGAAGTTGT+TGG 0.419685 5_1:+5478282 Msa0713320:CDS
ATTTCAGGTTTATGTGAGTC+AGG 0.422071 5_1:+5478006 Msa0713320:CDS
GAGGATTTGACGGTGGAGAA+TGG 0.423362 5_1:+5478166 Msa0713320:CDS
CATCCATTATTATTCATCAA+TGG 0.429516 5_1:+5477430 Msa0713320:exon
GGTTCCGATGACGAAGTATA+TGG 0.431073 5_1:+5478066 Msa0713320:CDS
TGAAATATTTGCTTCACTAA+AGG 0.431108 5_1:+5482840 Msa0713320:CDS
CTTGGACAGAATACAGAAAC+TGG 0.434228 5_1:+5480987 Msa0713320:CDS
TAGTGTTCAGAGTAACAATA+AGG 0.435873 5_1:+5481187 Msa0713320:CDS
AATTCTTACAATAAAAGCTT+CGG 0.439814 5_1:-5477852 None:intergenic
TCTCTTACAAAGGTCATGTC+TGG 0.440456 5_1:-5481473 None:intergenic
CCAAATATTCTTCATCAAAA+GGG 0.444882 5_1:+5482100 Msa0713320:CDS
GTATAGGCTGATCACTTTCA+AGG 0.445016 5_1:-5481412 None:intergenic
TTGGATTTGAGAGTGGGAGA+AGG 0.445667 5_1:-5477605 None:intergenic
CATAGTATTGGAAGAAGTCT+TGG 0.450907 5_1:+5479354 Msa0713320:CDS
TTCCCCGGCTACGTATAATC+TGG 0.457803 5_1:+5482794 Msa0713320:CDS
TTGGAATTGAAAATTCTTGA+AGG 0.459000 5_1:-5477372 None:intergenic
CTAGAGCCATCAATAATGAT+TGG 0.459040 5_1:-5481167 None:intergenic
CACCATTAATTTGCGTGGAA+AGG 0.459042 5_1:+5482170 Msa0713320:CDS
TTCTGATCGTCCTCAGGCGA+TGG 0.459265 5_1:+5477913 Msa0713320:CDS
AGGATTTGACGGTGGAGAAT+GGG 0.460766 5_1:+5478167 Msa0713320:CDS
TGCATCAATATATCATCATT+GGG 0.460824 5_1:+5483680 Msa0713320:three_prime_UTR
AGTTGTTGGATTATCTAGTC+AGG 0.461734 5_1:+5478296 Msa0713320:CDS
AATGGCCCAATCATTATTGA+TGG 0.462309 5_1:+5481161 Msa0713320:CDS
GGATATTCTTGAAGAGGTAG+AGG 0.463581 5_1:+5479633 Msa0713320:intron
GGACTCACAATTCTCTCATC+AGG 0.464055 5_1:+5477506 Msa0713320:CDS
TACTATGCCATGATTTGAAC+TGG 0.464434 5_1:-5479338 None:intergenic
TTCAAATCATGGCATAGTAT+TGG 0.467334 5_1:+5479342 Msa0713320:CDS
GTATTCTGTCCAAGGGATAT+GGG 0.469017 5_1:-5480978 None:intergenic
CTTCTCCACTCTTCTTCACA+AGG 0.470225 5_1:+5477563 Msa0713320:CDS
GACTTCGATTTCTCTTACAA+AGG 0.470567 5_1:-5481483 None:intergenic
AAAGAAGCCAAAGGATCCTA+AGG 0.472095 5_1:+5480929 Msa0713320:CDS
TCCACAATTCCTTCTTCTGA+CGG 0.475046 5_1:-5482910 None:intergenic
GGATATAGTCACCAACTTCA+AGG 0.475904 5_1:-5482144 None:intergenic
CAGTTTCTGTATTCTGTCCA+AGG 0.478718 5_1:-5480986 None:intergenic
CACCAATACAATGCCATTGT+CGG 0.479002 5_1:-5479713 None:intergenic
TGAAGGTCATTCAAGATGAA+TGG 0.479387 5_1:+5480856 Msa0713320:intron
AGAGGTTGATAAAGAAATGC+AGG 0.480477 5_1:+5481950 Msa0713320:CDS
TGCATTGAGGATTAATATAC+CGG 0.483156 5_1:-5477807 None:intergenic
GCAAGTATACGTAGAGAGAA+TGG 0.483469 5_1:+5481587 Msa0713320:CDS
ACCCTAATATCCACCACATC+CGG 0.483836 5_1:-5478046 None:intergenic
CCACAATTCCTTCTTCTGAC+GGG 0.485112 5_1:-5482909 None:intergenic
ATGTGAGTCAGGAGCTTGAA+AGG 0.485830 5_1:+5478017 Msa0713320:CDS
CTCCCTACCTCAACAATCTC+CGG 0.486509 5_1:+5477788 Msa0713320:CDS
CGGAAATTGAATGTGCATTG+AGG 0.491952 5_1:-5477820 None:intergenic
CTCTTCCAGAGTTTCACATC+AGG 0.496021 5_1:+5482208 Msa0713320:CDS
CACCGACAATGGCATTGTAT+TGG 0.499306 5_1:+5479711 Msa0713320:CDS
AATTATAGGGCCATAATGGA+TGG 0.499805 5_1:+5483462 Msa0713320:CDS
CTGTAGACGATGCAGTTCTT+CGG 0.500641 5_1:+5481324 Msa0713320:CDS
CTCACATAAACCTGAAATCT+CGG 0.502105 5_1:-5478001 None:intergenic
CGACAATGGCATTGTATTGG+TGG 0.503087 5_1:+5479714 Msa0713320:CDS
TTAAGAATCCCAAAACCCTT+AGG 0.504091 5_1:-5480945 None:intergenic
CCTGATGCCATGGCAAGAGA+TGG 0.505249 5_1:+5481359 Msa0713320:CDS
AGACCAGATTATACGTAGCC+GGG 0.510695 5_1:-5482797 None:intergenic
GAGTAACAATAAGGAGGAAG+TGG 0.511062 5_1:+5481196 Msa0713320:CDS
GGTTGATGTGGAGGATTTGA+CGG 0.512007 5_1:+5478156 Msa0713320:CDS
TGAAAGGGATCCACCGGATG+TGG 0.516823 5_1:+5478033 Msa0713320:CDS
AGGTCGGCGGTGATTTCAGT+CGG 0.517477 5_1:-5477674 None:intergenic
TAGAGCCATCAATAATGATT+GGG 0.519009 5_1:-5481166 None:intergenic
AACTGGCGGCATCAATAAGC+AGG 0.520303 5_1:+5481004 Msa0713320:CDS
GTGGGTGTCCCGTCAGAAGA+AGG 0.521697 5_1:+5482901 Msa0713320:CDS
AGTATTTAAATCTGAATCTA+GGG 0.523014 5_1:-5481889 None:intergenic
AGAGTGGAGAAGAAGAAGAG+AGG 0.523516 5_1:-5477552 None:intergenic
GACGAATAAGGTTGATGTGG+AGG 0.525666 5_1:+5478147 Msa0713320:CDS
GGAGTCACTCCCATATCCCT+TGG 0.526144 5_1:+5480969 Msa0713320:CDS
TCACCAACTTCAAGGGTCAC+TGG 0.527041 5_1:-5482136 None:intergenic
TATCATCTTGTGAGGTCAGA+TGG 0.528309 5_1:+5479020 Msa0713320:CDS
TATTCTTGAAGAGGTAGAGG+AGG 0.530461 5_1:+5479636 Msa0713320:CDS
TCAGGTCATTGTGGACATGC+GGG 0.534537 5_1:+5482060 Msa0713320:intron
AACTCAATAACCAGAAAAGC+AGG 0.535534 5_1:+5481918 Msa0713320:CDS
TGTGAGTCAGGAGCTTGAAA+GGG 0.539494 5_1:+5478018 Msa0713320:CDS
ACACGTAAGACCTTCCACTT+TGG 0.540143 5_1:-5479385 None:intergenic
GATTTGGGTGGACATGTTCG+TGG 0.540278 5_1:+5481110 Msa0713320:CDS
GCCTCAACCAGTTCAAATCA+TGG 0.540311 5_1:+5479331 Msa0713320:CDS
CCTATCACCATTAATTTGCG+TGG 0.542199 5_1:+5482165 Msa0713320:CDS
TACCGGAGATTGTTGAGGTA+GGG 0.544284 5_1:-5477790 None:intergenic
GGTAGAGGAGGAAAGACGAA+AGG 0.544326 5_1:+5479648 Msa0713320:CDS
TGAAACAAAAGCAATGAGAG+TGG 0.545369 5_1:+5482882 Msa0713320:CDS
TGGCTTCCCATCTCTTGCCA+TGG 0.545402 5_1:-5481366 None:intergenic
GGCTTTAATATGTCCAGTAT+AGG 0.545948 5_1:-5481428 None:intergenic
TGATTTCAGTCGGGATTTGG+TGG 0.546327 5_1:-5477664 None:intergenic
ATTCCAGTGACCCTTGAAGT+TGG 0.548185 5_1:+5482133 Msa0713320:CDS
GCTGTTTATCAGAGTGGGCG+TGG 0.552093 5_1:+5481849 Msa0713320:intron
TGCAACATTTCAGGTCATTG+TGG 0.552950 5_1:+5482051 Msa0713320:intron
AGATCAACGATGAGGATTCG+AGG 0.554305 5_1:-5477752 None:intergenic
TTTGATGAAGAATATTTGGA+AGG 0.555720 5_1:-5482096 None:intergenic
ACCGGGCCATTGTTTCCACC+TGG 0.558185 5_1:-5482243 None:intergenic
GATAATGAAGACACTGAAGA+AGG 0.559010 5_1:+5479101 Msa0713320:CDS
CTGATGCCATGGCAAGAGAT+GGG 0.559494 5_1:+5481360 Msa0713320:CDS
TTCAGGTCATTGTGGACATG+CGG 0.559800 5_1:+5482059 Msa0713320:intron
AGTGATGAAACAAACGTGGC+CGG 0.560188 5_1:-5477729 None:intergenic
GTTCTGTGATTATGTGTTCG+TGG 0.560393 5_1:-5477463 None:intergenic
CGTCACTCTCTCTATTCCTC+CGG 0.561209 5_1:+5477710 Msa0713320:CDS
TCTTACAATAAAAGCTTCGG+TGG 0.561222 5_1:-5477849 None:intergenic
CACATCATCACCAATATCAC+TGG 0.561268 5_1:-5482725 None:intergenic
AAAAGCAGGTGGGAGAAAAG+AGG 0.563035 5_1:+5481932 Msa0713320:CDS
GAGGAGGAAAGACGAAAGGA+AGG 0.565647 5_1:+5479652 Msa0713320:CDS
AAATTACAACACATCGGCTG+TGG 0.565719 5_1:+5483404 Msa0713320:CDS
GACGACCTGATGTGAAACTC+TGG 0.566044 5_1:-5482213 None:intergenic
GAGACCAGATTATACGTAGC+CGG 0.566434 5_1:-5482798 None:intergenic
GGCCCGGTATTATAAAATAC+CGG 0.566778 5_1:+5482258 Msa0713320:CDS
GGTCGGCGGTGATTTCAGTC+GGG 0.568350 5_1:-5477673 None:intergenic
TATAGGCTGATCACTTTCAA+GGG 0.569642 5_1:-5481411 None:intergenic
GATATAGTCACCAACTTCAA+GGG 0.570342 5_1:-5482143 None:intergenic
AGAGAAGAAGTGTTGGCTGA+AGG 0.570892 5_1:+5479682 Msa0713320:CDS
GATGATGATTCCAATTGACC+AGG 0.572392 5_1:+5481643 Msa0713320:CDS
GGAGCTTGAAAGGGATCCAC+CGG 0.572541 5_1:+5478027 Msa0713320:CDS
TTCTGTTTGGATATTTGCAG+AGG 0.573410 5_1:+5478959 Msa0713320:CDS
GCATACCTTTCCTGATGCCA+TGG 0.573742 5_1:+5481349 Msa0713320:CDS
TACCGAGGTTCAGAAGTTTG+AGG 0.573827 5_1:+5481565 Msa0713320:CDS
ATACCGGAGATTGTTGAGGT+AGG 0.576613 5_1:-5477791 None:intergenic
GCCATGATTTGAACTGGTTG+AGG 0.578463 5_1:-5479332 None:intergenic
TCTATAGGATATTCTTGAAG+AGG 0.578535 5_1:+5479627 Msa0713320:intron
TTACAAAGGTCATGTCTGGA+TGG 0.580235 5_1:-5481469 None:intergenic
GTGGTTAACGGCGAGGTCGG+CGG 0.582058 5_1:-5477687 None:intergenic
TGGTGGCATGTAAAGATGAA+AGG 0.582112 5_1:+5479731 Msa0713320:CDS
ATGGTAAACGACAATTATAG+AGG 0.582858 5_1:-5481450 None:intergenic
TCTTGCCATGGCATCAGGAA+AGG 0.583375 5_1:-5481354 None:intergenic
ACGGTGGTTAACGGCGAGGT+CGG 0.584337 5_1:-5477690 None:intergenic
CCGATGACGAAGTATATGGT+GGG 0.586824 5_1:+5478070 Msa0713320:CDS
GGAAGAAGCACCAAAGTGGA+AGG 0.587130 5_1:+5479375 Msa0713320:CDS
GTCCACCCAAATCAGACTGA+GGG 0.588033 5_1:-5481100 None:intergenic
AGCATCTAGAAAGTCTCTAA+GGG 0.590263 5_1:-5483565 None:intergenic
GAAGACGAATAAGGTTGATG+TGG 0.590987 5_1:+5478144 Msa0713320:CDS
AGCACTAGTTTCACCCATGT+GGG 0.591717 5_1:-5481258 None:intergenic
TTGCTTGCCTCACAACAAAG+TGG 0.595258 5_1:-5483595 None:intergenic
TGCTTGCCTCACAACAAAGT+GGG 0.596550 5_1:-5483594 None:intergenic
AGTTTCTGTATTCTGTCCAA+GGG 0.598717 5_1:-5480985 None:intergenic
GTGTGCCTTGTGAAGAAGAG+TGG 0.600486 5_1:-5477568 None:intergenic
TGAGATTGTGAGGAGACAGT+TGG 0.601412 5_1:+5478207 Msa0713320:CDS
TAATATACCGGAGATTGTTG+AGG 0.602651 5_1:-5477795 None:intergenic
AAGGGATCCACCGGATGTGG+TGG 0.603412 5_1:+5478036 Msa0713320:CDS
CAGCACTAGTTTCACCCATG+TGG 0.605173 5_1:-5481259 None:intergenic
AAATATCCCACTTTGTTGTG+AGG 0.605641 5_1:+5483588 Msa0713320:CDS
TCCGATGACGAAGTATATGG+TGG 0.605903 5_1:+5478069 Msa0713320:CDS
CCCACCATATACTTCGTCAT+CGG 0.606972 5_1:-5478070 None:intergenic
TTTCTGATCTTAAGACGTTG+AGG 0.607391 5_1:+5478272 Msa0713320:CDS
AGTCGTTTGATGAGATTGTG+AGG 0.607565 5_1:+5478197 Msa0713320:CDS
ACCAGGTGGAAACAATGGCC+CGG 0.608400 5_1:+5482242 Msa0713320:CDS
ATTATAGGGCCATAATGGAT+GGG 0.608748 5_1:+5483463 Msa0713320:CDS
ACGCATCGCGATTAAACGAA+CGG 0.614460 5_1:-5477877 None:intergenic
GAAAACTCAATCAAGAGCAC+CGG 0.619468 5_1:-5482277 None:intergenic
TTTGGATACACTCAGAGTGT+CGG 0.621133 5_1:+5478926 Msa0713320:CDS
GAAACAAAAGCAATGAGAGT+GGG 0.625806 5_1:+5482883 Msa0713320:CDS
ATACAACCAGGTGGAAACAA+TGG 0.625836 5_1:+5482237 Msa0713320:CDS
AACGTGTTTATCATCTTGTG+AGG 0.628573 5_1:+5479012 Msa0713320:CDS
CGATGACGAAGTATATGGTG+GGG 0.628683 5_1:+5478071 Msa0713320:CDS
TGCCTCAAACTTCTGAACCT+CGG 0.633949 5_1:-5481567 None:intergenic
TGGTAAACGACAATTATAGA+GGG 0.634773 5_1:-5481449 None:intergenic
ACCCCTCAGTCTGATTTGGG+TGG 0.635198 5_1:+5481098 Msa0713320:CDS
TCTTGGAAGAAGCACCAAAG+TGG 0.638664 5_1:+5479371 Msa0713320:CDS
AAGAAGCCAAAGGATCCTAA+GGG 0.640306 5_1:+5480930 Msa0713320:CDS
CATGTTGAGAGAAGAAGTGT+TGG 0.640935 5_1:+5479675 Msa0713320:CDS
TGTTCAGAGTAACAATAAGG+AGG 0.640959 5_1:+5481190 Msa0713320:CDS
CTAATATCCACCACATCCGG+TGG 0.646959 5_1:-5478043 None:intergenic
ATCAGGTCGTCTATACAACC+AGG 0.647266 5_1:+5482225 Msa0713320:CDS
AAGTGGCAAGTGGTAAAACT+GGG 0.647794 5_1:+5481213 Msa0713320:CDS
CGGAGGAATAGAGAGAGTGA+CGG 0.653257 5_1:-5477709 None:intergenic
TTGTTAAAAGATCAACGATG+AGG 0.653406 5_1:-5477760 None:intergenic
GACCAGATTATACGTAGCCG+GGG 0.655756 5_1:-5482796 None:intergenic
TAGACGATGCAGTTCTTCGG+AGG 0.657142 5_1:+5481327 Msa0713320:CDS
TGATGTGGAGGATTTGACGG+TGG 0.658243 5_1:+5478159 Msa0713320:CDS
AATAAGGAGGAAGTGGCAAG+TGG 0.663909 5_1:+5481203 Msa0713320:CDS
TAATTAGAATCTGTAACACC+AGG 0.663930 5_1:-5483444 None:intergenic
TCAATAACCAGAAAAGCAGG+TGG 0.667123 5_1:+5481921 Msa0713320:CDS
GAGTTTGTGAAACCAAACAC+GGG 0.667217 5_1:+5481294 Msa0713320:CDS
TTTCTATGAAGATTCTACCG+AGG 0.670018 5_1:+5481550 Msa0713320:CDS
GAAGGTGAAGACACCGACAA+TGG 0.670311 5_1:+5479700 Msa0713320:CDS
AAACCAGAAACCATCGCCTG+AGG 0.670896 5_1:-5477923 None:intergenic
GGCTGAAAATTACAACACAT+CGG 0.677724 5_1:+5483398 Msa0713320:CDS
AGAGTTTGTGAAACCAAACA+CGG 0.679375 5_1:+5481293 Msa0713320:CDS
CAATAACCAGAAAAGCAGGT+GGG 0.683805 5_1:+5481922 Msa0713320:CDS
AAGCTAGCTGAAATAATGGG+TGG 0.684063 5_1:+5483525 Msa0713320:CDS
GATGAAACAAACGTGGCCGG+AGG 0.685510 5_1:-5477726 None:intergenic
TGTCCACCCAAATCAGACTG+AGG 0.686132 5_1:-5481101 None:intergenic
ATGCATGTTTGAAAGAGATG+AGG 0.694727 5_1:+5478122 Msa0713320:CDS
CCCGTCAGAAGAAGGAATTG+TGG 0.696840 5_1:+5482909 Msa0713320:CDS
AGGAATAGAGAGAGTGACGG+TGG 0.698504 5_1:-5477706 None:intergenic
TCCACCCAAATCAGACTGAG+GGG 0.701752 5_1:-5481099 None:intergenic
GAACTTCTAGAAGACAACAA+TGG 0.710472 5_1:+5477482 Msa0713320:CDS
AGTGACGGTGGTTAACGGCG+AGG 0.717877 5_1:-5477694 None:intergenic
CTTCTAGAAGACAACAATGG+CGG 0.720413 5_1:+5477485 Msa0713320:CDS
GAATTGTGGAAAGTGACGTG+AGG 0.720586 5_1:+5482923 Msa0713320:CDS
GAAAAGGCAAGAGAAAATTG+GGG 0.723707 5_1:+5481132 Msa0713320:CDS
GGACAGAATACAGAAACTGG+CGG 0.724595 5_1:+5480990 Msa0713320:CDS
AGGTCGTCTATACAACCAGG+TGG 0.725762 5_1:+5482228 Msa0713320:CDS
AGTTTGTGAAACCAAACACG+GGG 0.728405 5_1:+5481295 Msa0713320:CDS
GAGGAGTGATGAAACAAACG+TGG 0.753230 5_1:-5477733 None:intergenic
TTTGTGAAACCAAACACGGG+GGG 0.756170 5_1:+5481297 Msa0713320:CDS
GTTTGTGAAACCAAACACGG+GGG 0.775210 5_1:+5481296 Msa0713320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTGAATTTGAAAAATTT+AGG - chr5_1:5477399-5477418 None:intergenic 15.0%
!! AGCATTTAAAAAAATAAAAG+AGG + chr5_1:5479208-5479227 Msa0713320:intron 15.0%
!!! TAGTTTAATTTGATAAATGT+TGG + chr5_1:5479571-5479590 Msa0713320:intron 15.0%
!! TTATGTCTTCTTATAAAATA+AGG + chr5_1:5479810-5479829 Msa0713320:intron 15.0%
!!! TCTTTGAAATATTATAAATC+TGG + chr5_1:5479984-5480003 Msa0713320:intron 15.0%
!!! CTTTGAAATATTATAAATCT+GGG + chr5_1:5479985-5480004 Msa0713320:intron 15.0%
!!! TTTGAAATATTATAAATCTG+GGG + chr5_1:5479986-5480005 Msa0713320:intron 15.0%
!!! TTCTTAGTTTTATATTTCTA+AGG + chr5_1:5482957-5482976 Msa0713320:intron 15.0%
!!! GAATTTGAAAAATTTAGGTT+TGG - chr5_1:5477394-5477413 None:intergenic 20.0%
!! AATTCTTACAATAAAAGCTT+CGG - chr5_1:5477855-5477874 None:intergenic 20.0%
!!! TGAATTAGCTTATTGAAAAA+TGG + chr5_1:5478738-5478757 Msa0713320:intron 20.0%
!! CTAACTAAAAAATACATGTT+TGG - chr5_1:5478791-5478810 None:intergenic 20.0%
!! GTCAAAAACAAAAAGAAAAA+AGG + chr5_1:5479071-5479090 Msa0713320:CDS 20.0%
!!! AAAAAATAAAAGAGGCATAA+AGG + chr5_1:5479216-5479235 Msa0713320:intron 20.0%
!!! TATCATCGTTTTATTTGATT+TGG + chr5_1:5479444-5479463 Msa0713320:intron 20.0%
!!! TTGATAAATGTTGGATATTT+TGG + chr5_1:5479580-5479599 Msa0713320:intron 20.0%
!!! TGATAAATGTTGGATATTTT+GGG + chr5_1:5479581-5479600 Msa0713320:intron 20.0%
!!! TAAAAAAAGACAACCTTTTT+TGG - chr5_1:5479793-5479812 None:intergenic 20.0%
!!! CTCTAATTTTATGAAATTTG+TGG + chr5_1:5480226-5480245 Msa0713320:intron 20.0%
!!! AAAAATAGAATTTTCTGTCT+TGG + chr5_1:5480596-5480615 Msa0713320:intron 20.0%
!! CATAATCACAAAAAAAGTAA+AGG - chr5_1:5480729-5480748 None:intergenic 20.0%
!!! TACTTTTTTTGTGATTATGA+TGG + chr5_1:5480730-5480749 Msa0713320:intron 20.0%
!!! CTATTGTTTTTTTATTGTGA+AGG + chr5_1:5480839-5480858 Msa0713320:intron 20.0%
!! AATCAAAAAGAAAAACATGA+GGG - chr5_1:5481690-5481709 None:intergenic 20.0%
!! AGTATTTAAATCTGAATCTA+GGG - chr5_1:5481892-5481911 None:intergenic 20.0%
!! TAGTATTTAAATCTGAATCT+AGG - chr5_1:5481893-5481912 None:intergenic 20.0%
!! CAAATTAGTACTAAATATCT+GGG + chr5_1:5482467-5482486 Msa0713320:intron 20.0%
!! AACTTTGATATAATGCTATT+GGG - chr5_1:5482754-5482773 None:intergenic 20.0%
!! TGTTACAGATTCTAATTATA+GGG + chr5_1:5483449-5483468 Msa0713320:CDS 20.0%
! TTGGAATTGAAAATTCTTGA+AGG - chr5_1:5477375-5477394 None:intergenic 25.0%
! CATCCATTATTATTCATCAA+TGG + chr5_1:5477430-5477449 Msa0713320:exon 25.0%
! GAACCATTGATGAATAATAA+TGG - chr5_1:5477436-5477455 None:intergenic 25.0%
!!! TTTGAGATGGAAATTGATTT+TGG - chr5_1:5477627-5477646 None:intergenic 25.0%
! TTTCTTCAATTAAGAGAACA+AGG + chr5_1:5478662-5478681 Msa0713320:intron 25.0%
! TTCTTCAATTAAGAGAACAA+GGG + chr5_1:5478663-5478682 Msa0713320:intron 25.0%
! GAGAAAAATCATAAGCTATA+AGG + chr5_1:5478697-5478716 Msa0713320:intron 25.0%
! AACAAAAAGAAAAAAGGCAA+AGG + chr5_1:5479077-5479096 Msa0713320:CDS 25.0%
! ACAAAAAGAAAAAAGGCAAA+GGG + chr5_1:5479078-5479097 Msa0713320:CDS 25.0%
!! ACTTATCGTTATGTTTTCTT+TGG + chr5_1:5479129-5479148 Msa0713320:intron 25.0%
! AAGCATGCAAAACAAAATTA+AGG - chr5_1:5479291-5479310 None:intergenic 25.0%
!! TTCGTTTGGATTTTCAAAAT+AGG + chr5_1:5479522-5479541 Msa0713320:intron 25.0%
! TGATTTGATCATATCTCTAT+AGG + chr5_1:5479612-5479631 Msa0713320:intron 25.0%
! TCAAAGTGGAAATAACATAA+TGG + chr5_1:5480189-5480208 Msa0713320:intron 25.0%
! CAAAGTGGAAATAACATAAT+GGG + chr5_1:5480190-5480209 Msa0713320:intron 25.0%
! ATTTGTGGATACATATAATC+TGG + chr5_1:5480241-5480260 Msa0713320:intron 25.0%
!! ACTCATTCGTTCAATTTTAT+TGG + chr5_1:5480331-5480350 Msa0713320:intron 25.0%
!! ATAGCTTAATGCTTTACTTT+TGG + chr5_1:5480531-5480550 Msa0713320:intron 25.0%
!!! TAGCTTAATGCTTTACTTTT+GGG + chr5_1:5480532-5480551 Msa0713320:intron 25.0%
!! TAACAAAAACTTCCTTCTTT+TGG + chr5_1:5480665-5480684 Msa0713320:intron 25.0%
!! TATACCTTTAACCTTTTAGA+GGG - chr5_1:5481524-5481543 None:intergenic 25.0%
! GAATCAAAAAGAAAAACATG+AGG - chr5_1:5481691-5481710 None:intergenic 25.0%
!!! CATGTTTTTCTTTTTGATTC+TGG + chr5_1:5481691-5481710 Msa0713320:intron 25.0%
! TGTAAGATGAAAGTTAGTAT+AGG - chr5_1:5481795-5481814 None:intergenic 25.0%
! TTTGATGAAGAATATTTGGA+AGG - chr5_1:5482099-5482118 None:intergenic 25.0%
! TCCAAATATTCTTCATCAAA+AGG + chr5_1:5482099-5482118 Msa0713320:CDS 25.0%
! CCAAATATTCTTCATCAAAA+GGG + chr5_1:5482100-5482119 Msa0713320:CDS 25.0%
! CCAGATATTTAGTACTAATT+TGG - chr5_1:5482469-5482488 None:intergenic 25.0%
! CCAAATTAGTACTAAATATC+TGG + chr5_1:5482466-5482485 Msa0713320:intron 25.0%
! CAACTTTGATATAATGCTAT+TGG - chr5_1:5482755-5482774 None:intergenic 25.0%
! TGAAATATTTGCTTCACTAA+AGG + chr5_1:5482840-5482859 Msa0713320:CDS 25.0%
! ATTGTAATTGCAAGAAACAT+TGG + chr5_1:5483037-5483056 Msa0713320:intron 25.0%
!!! TGCAGGCTTTATATAATTTT+AGG + chr5_1:5483163-5483182 Msa0713320:intron 25.0%
!! TCTGTTCCTAATGTAAATTT+TGG + chr5_1:5483355-5483374 Msa0713320:intron 25.0%
!! CTGTTCCTAATGTAAATTTT+GGG + chr5_1:5483356-5483375 Msa0713320:intron 25.0%
!! TGTTCCTAATGTAAATTTTG+GGG + chr5_1:5483357-5483376 Msa0713320:intron 25.0%
! TTAACCCCAAAATTTACATT+AGG - chr5_1:5483364-5483383 None:intergenic 25.0%
! GTGTTACAGATTCTAATTAT+AGG + chr5_1:5483448-5483467 Msa0713320:CDS 25.0%
! TGCATCAATATATCATCATT+GGG + chr5_1:5483680-5483699 Msa0713320:three_prime_UTR 25.0%
! TTGATTTTGGATTTGAGAGT+GGG - chr5_1:5477614-5477633 None:intergenic 30.0%
!! ATTGATTTTGGATTTGAGAG+TGG - chr5_1:5477615-5477634 None:intergenic 30.0%
TTGTTAAAAGATCAACGATG+AGG - chr5_1:5477763-5477782 None:intergenic 30.0%
TGCATTGAGGATTAATATAC+CGG - chr5_1:5477810-5477829 None:intergenic 30.0%
ATCCAATTTGGCATACTTTA+GGG + chr5_1:5478230-5478249 Msa0713320:CDS 30.0%
CTTTGTAGTTCTTTGTATTG+TGG + chr5_1:5478401-5478420 Msa0713320:intron 30.0%
TATAGAGAATTTCGTAGACT+AGG + chr5_1:5478457-5478476 Msa0713320:intron 30.0%
ATAGAGAATTTCGTAGACTA+GGG + chr5_1:5478458-5478477 Msa0713320:intron 30.0%
TGGTGAAAAATAACAGATAG+CGG + chr5_1:5478488-5478507 Msa0713320:intron 30.0%
CTGATTGAATTTGTAGTGTT+TGG + chr5_1:5478568-5478587 Msa0713320:intron 30.0%
GTAGTGTTTGGTAAAATTAG+CGG + chr5_1:5478580-5478599 Msa0713320:intron 30.0%
! AAGATATCAGCTATTGATTG+CGG + chr5_1:5478821-5478840 Msa0713320:intron 30.0%
TCAGTGCTCATGATAAAAAA+GGG - chr5_1:5478854-5478873 None:intergenic 30.0%
ATCAGTGCTCATGATAAAAA+AGG - chr5_1:5478855-5478874 None:intergenic 30.0%
!!! TTGTGTGGTTTTTTACTGAT+AGG + chr5_1:5478877-5478896 Msa0713320:intron 30.0%
! TTTTACTGATAGGTATGATG+CGG + chr5_1:5478887-5478906 Msa0713320:intron 30.0%
GGTGACTTACTTGAAATATT+TGG + chr5_1:5478908-5478927 Msa0713320:CDS 30.0%
CAAAAAGAAAAAAGGCAAAG+GGG + chr5_1:5479079-5479098 Msa0713320:CDS 30.0%
! ATAAAAGAGGCATAAAGGAA+AGG + chr5_1:5479221-5479240 Msa0713320:intron 30.0%
TTCAAATCATGGCATAGTAT+TGG + chr5_1:5479342-5479361 Msa0713320:CDS 30.0%
! TTCCTATTCTAGAAAGTCTA+TGG + chr5_1:5479419-5479438 Msa0713320:intron 30.0%
!!! TAATGCTTTTCTAGTTCGTT+TGG + chr5_1:5479508-5479527 Msa0713320:intron 30.0%
TCTATAGGATATTCTTGAAG+AGG + chr5_1:5479627-5479646 Msa0713320:intron 30.0%
!! ACTGCACTGATTAAATAATC+CGG - chr5_1:5479854-5479873 None:intergenic 30.0%
!! AGAATTCGTTAGGATTAGTT+TGG - chr5_1:5479924-5479943 None:intergenic 30.0%
! TTTTCAGCATAGAATTCGTT+AGG - chr5_1:5479934-5479953 None:intergenic 30.0%
! GATGGCAATTTTGGATAATA+AGG + chr5_1:5480035-5480054 Msa0713320:intron 30.0%
! ACCATGGATTTTATTCAAAG+TGG + chr5_1:5480175-5480194 Msa0713320:intron 30.0%
TCCACTTTGAATAAAATCCA+TGG - chr5_1:5480179-5480198 None:intergenic 30.0%
! TCAATTTTATTGGCAGTGAT+TGG + chr5_1:5480341-5480360 Msa0713320:intron 30.0%
AGAAAATTGGGGAATAGAAA+TGG + chr5_1:5481143-5481162 Msa0713320:CDS 30.0%
TAGAGCCATCAATAATGATT+GGG - chr5_1:5481169-5481188 None:intergenic 30.0%
TAGTGTTCAGAGTAACAATA+AGG + chr5_1:5481187-5481206 Msa0713320:CDS 30.0%
!!! GTGGGCTTTATTTTTTGAAT+CGG - chr5_1:5481243-5481262 None:intergenic 30.0%
TTCAAAAAATAAAGCCCACA+TGG + chr5_1:5481244-5481263 Msa0713320:CDS 30.0%
TCAAAAAATAAAGCCCACAT+GGG + chr5_1:5481245-5481264 Msa0713320:CDS 30.0%
TGGTAAACGACAATTATAGA+GGG - chr5_1:5481452-5481471 None:intergenic 30.0%
ATGGTAAACGACAATTATAG+AGG - chr5_1:5481453-5481472 None:intergenic 30.0%
! GTATACCTTTAACCTTTTAG+AGG - chr5_1:5481525-5481544 None:intergenic 30.0%
CAACTATAGTAAAACAAACC+TGG - chr5_1:5481664-5481683 None:intergenic 30.0%
! ATTGTTTCCTCTTTTCTGAT+TGG + chr5_1:5481814-5481833 Msa0713320:intron 30.0%
!!! TTTTCTGGTTATTGAGTTCT+GGG - chr5_1:5481916-5481935 None:intergenic 30.0%
TTCGCAAACTATAAAATCCA+TGG - chr5_1:5482030-5482049 None:intergenic 30.0%
! CCCTTTTGATGAAGAATATT+TGG - chr5_1:5482103-5482122 None:intergenic 30.0%
! TACTGTCTTGTTACTATCAA+TGG + chr5_1:5482361-5482380 Msa0713320:intron 30.0%
AATTTGGACCAAAACAGTAA+CGG - chr5_1:5482453-5482472 None:intergenic 30.0%
CAAACAAGCTATATCATACA+TGG + chr5_1:5482614-5482633 Msa0713320:intron 30.0%
!!! CTTGATTAGCATTTGTTTTG+TGG + chr5_1:5482656-5482675 Msa0713320:intron 30.0%
!! CAACAAATATTGATTTGTGC+AGG + chr5_1:5483146-5483165 Msa0713320:intron 30.0%
GAAATATTCTTGTTGAGACA+TGG - chr5_1:5483213-5483232 None:intergenic 30.0%
TAATTAGAATCTGTAACACC+AGG - chr5_1:5483447-5483466 None:intergenic 30.0%
TTCTAATTATAGGGCCATAA+TGG + chr5_1:5483458-5483477 Msa0713320:CDS 30.0%
AGAAAAGCTAGCTGAAATAA+TGG + chr5_1:5483521-5483540 Msa0713320:CDS 30.0%
GAAAAGCTAGCTGAAATAAT+GGG + chr5_1:5483522-5483541 Msa0713320:CDS 30.0%
AGACAATTCATTTGTCGAAA+TGG + chr5_1:5483617-5483636 Msa0713320:three_prime_UTR 30.0%
CTGCATCAATATATCATCAT+TGG + chr5_1:5483679-5483698 Msa0713320:three_prime_UTR 30.0%
! GAACTTCTAGAAGACAACAA+TGG + chr5_1:5477482-5477501 Msa0713320:CDS 35.0%
!! AGAGGAGATGAGTTTTGATA+AGG - chr5_1:5477537-5477556 None:intergenic 35.0%
TAATATACCGGAGATTGTTG+AGG - chr5_1:5477798-5477817 None:intergenic 35.0%
TCTTACAATAAAAGCTTCGG+TGG - chr5_1:5477852-5477871 None:intergenic 35.0%
GGTTACGGAAGTTACATTTA+TGG + chr5_1:5477978-5477997 Msa0713320:CDS 35.0%
CTCACATAAACCTGAAATCT+CGG - chr5_1:5478004-5478023 None:intergenic 35.0%
!! ATTTCAGGTTTATGTGAGTC+AGG + chr5_1:5478006-5478025 Msa0713320:CDS 35.0%
GAAAGCGATTGTTGAAGTTA+TGG + chr5_1:5478099-5478118 Msa0713320:CDS 35.0%
ATGCATGTTTGAAAGAGATG+AGG + chr5_1:5478122-5478141 Msa0713320:CDS 35.0%
GATCCAATTTGGCATACTTT+AGG + chr5_1:5478229-5478248 Msa0713320:CDS 35.0%
TTCCCTAAAGTATGCCAAAT+TGG - chr5_1:5478235-5478254 None:intergenic 35.0%
TTTCTGATCTTAAGACGTTG+AGG + chr5_1:5478272-5478291 Msa0713320:CDS 35.0%
AGTTGTTGGATTATCTAGTC+AGG + chr5_1:5478296-5478315 Msa0713320:CDS 35.0%
!!! CTCATCGATGTTTTAACTTG+CGG + chr5_1:5478363-5478382 Msa0713320:intron 35.0%
CTTTGTATTGTGGAGAATCA+CGG + chr5_1:5478411-5478430 Msa0713320:intron 35.0%
TTATGGCAGATAGCTTATAG+CGG + chr5_1:5478536-5478555 Msa0713320:intron 35.0%
ATAAGCTCGTGAGAAAATGA+CGG + chr5_1:5478762-5478781 Msa0713320:intron 35.0%
TTCTGTTTGGATATTTGCAG+AGG + chr5_1:5478959-5478978 Msa0713320:CDS 35.0%
AACGTGTTTATCATCTTGTG+AGG + chr5_1:5479012-5479031 Msa0713320:CDS 35.0%
GATAATGAAGACACTGAAGA+AGG + chr5_1:5479101-5479120 Msa0713320:CDS 35.0%
! TTGGTTCTTTAATCTCGCAT+AGG + chr5_1:5479148-5479167 Msa0713320:intron 35.0%
!!! TTTTGTTTTGCATGCTTGTG+TGG + chr5_1:5479294-5479313 Msa0713320:intron 35.0%
TACTATGCCATGATTTGAAC+TGG - chr5_1:5479341-5479360 None:intergenic 35.0%
! CATAGTATTGGAAGAAGTCT+TGG + chr5_1:5479354-5479373 Msa0713320:CDS 35.0%
!! AGCCATAGACTTTCTAGAAT+AGG - chr5_1:5479424-5479443 None:intergenic 35.0%
ATGCAAGACAGACACTAATT+TGG + chr5_1:5479468-5479487 Msa0713320:intron 35.0%
GTGTGATATGAGTGTAATTC+CGG + chr5_1:5479832-5479851 Msa0713320:intron 35.0%
! GTGCAGTAGTCAATTTTGTA+TGG + chr5_1:5479867-5479886 Msa0713320:intron 35.0%
! AAATCTGGGGCAAGATATTA+TGG + chr5_1:5479999-5480018 Msa0713320:intron 35.0%
TATGGAATATGCATCGTTGA+TGG + chr5_1:5480017-5480036 Msa0713320:intron 35.0%
! GTATTTTTCCTGTGAGCTTT+TGG + chr5_1:5480106-5480125 Msa0713320:intron 35.0%
CTGATATGTGATGATTACCA+TGG + chr5_1:5480159-5480178 Msa0713320:intron 35.0%
AGCAGTGATTGACTGAATAT+TGG + chr5_1:5480306-5480325 Msa0713320:intron 35.0%
TGACTGTAGTCTATAGCAAA+AGG + chr5_1:5480378-5480397 Msa0713320:intron 35.0%
ATTGGTTAAGCACCAAAAGA+AGG - chr5_1:5480680-5480699 None:intergenic 35.0%
TATCAACCAGCAAAAACTCA+AGG - chr5_1:5480775-5480794 None:intergenic 35.0%
TGAAGGTCATTCAAGATGAA+TGG + chr5_1:5480856-5480875 Msa0713320:intron 35.0%
GCATAAGAAAAAGAAGCCAA+AGG + chr5_1:5480920-5480939 Msa0713320:CDS 35.0%
TTAAGAATCCCAAAACCCTT+AGG - chr5_1:5480948-5480967 None:intergenic 35.0%
!!! AAGGGTTTTGGGATTCTTAA+TGG + chr5_1:5480948-5480967 Msa0713320:CDS 35.0%
AGTTTCTGTATTCTGTCCAA+GGG - chr5_1:5480988-5481007 None:intergenic 35.0%
TGGAAAAGGCAAGAGAAAAT+TGG + chr5_1:5481130-5481149 Msa0713320:CDS 35.0%
GGAAAAGGCAAGAGAAAATT+GGG + chr5_1:5481131-5481150 Msa0713320:CDS 35.0%
GAAAAGGCAAGAGAAAATTG+GGG + chr5_1:5481132-5481151 Msa0713320:CDS 35.0%
AATGGCCCAATCATTATTGA+TGG + chr5_1:5481161-5481180 Msa0713320:CDS 35.0%
CTAGAGCCATCAATAATGAT+TGG - chr5_1:5481170-5481189 None:intergenic 35.0%
TGTTCAGAGTAACAATAAGG+AGG + chr5_1:5481190-5481209 Msa0713320:CDS 35.0%
AGAGTTTGTGAAACCAAACA+CGG + chr5_1:5481293-5481312 Msa0713320:CDS 35.0%
! TAAAAATGTACTGGTGGTAG+TGG - chr5_1:5481389-5481408 None:intergenic 35.0%
! TCAAGGGCATAAAAATGTAC+TGG - chr5_1:5481398-5481417 None:intergenic 35.0%
TATAGGCTGATCACTTTCAA+GGG - chr5_1:5481414-5481433 None:intergenic 35.0%
! GGCTTTAATATGTCCAGTAT+AGG - chr5_1:5481431-5481450 None:intergenic 35.0%
GACTTCGATTTCTCTTACAA+AGG - chr5_1:5481486-5481505 None:intergenic 35.0%
! GAATCCCTCTAAAAGGTTAA+AGG + chr5_1:5481517-5481536 Msa0713320:CDS 35.0%
TTTCTATGAAGATTCTACCG+AGG + chr5_1:5481550-5481569 Msa0713320:CDS 35.0%
GTAAAACAAACCTGGTCAAT+TGG - chr5_1:5481656-5481675 None:intergenic 35.0%
CCATTATCCACATTCCTATA+CGG - chr5_1:5481755-5481774 None:intergenic 35.0%
CGTATAGGAATGTGGATAAT+GGG + chr5_1:5481753-5481772 Msa0713320:intron 35.0%
!! AAAAGCACCAATCAGAAAAG+AGG - chr5_1:5481824-5481843 None:intergenic 35.0%
!!! CTTTTCTGGTTATTGAGTTC+TGG - chr5_1:5481917-5481936 None:intergenic 35.0%
AACTCAATAACCAGAAAAGC+AGG + chr5_1:5481918-5481937 Msa0713320:CDS 35.0%
!! AGAGGTTGATAAAGAAATGC+AGG + chr5_1:5481950-5481969 Msa0713320:CDS 35.0%
AAATCCATGGCAAGTATATG+AGG - chr5_1:5482017-5482036 None:intergenic 35.0%
TTTGCGAATTGCAACATTTC+AGG + chr5_1:5482042-5482061 Msa0713320:intron 35.0%
GATATAGTCACCAACTTCAA+GGG - chr5_1:5482146-5482165 None:intergenic 35.0%
TTCCTTTCCACGCAAATTAA+TGG - chr5_1:5482175-5482194 None:intergenic 35.0%
! CACCGGTATTTTATAATACC+GGG - chr5_1:5482263-5482282 None:intergenic 35.0%
!! GCACCGGTATTTTATAATAC+CGG - chr5_1:5482264-5482283 None:intergenic 35.0%
!! TCAATGGCTTGTTCATATTC+TGG + chr5_1:5482377-5482396 Msa0713320:intron 35.0%
!! CAATGGCTTGTTCATATTCT+GGG + chr5_1:5482378-5482397 Msa0713320:intron 35.0%
!! AATGGCTTGTTCATATTCTG+GGG + chr5_1:5482379-5482398 Msa0713320:intron 35.0%
CGGCAAGCATTCTTATAAAT+GGG - chr5_1:5482433-5482452 None:intergenic 35.0%
ACGGCAAGCATTCTTATAAA+TGG - chr5_1:5482434-5482453 None:intergenic 35.0%
GAATGACATTTGATCTGTCA+TGG + chr5_1:5482685-5482704 Msa0713320:intron 35.0%
!! CTCATTGCTTTTGTTTCATC+TGG - chr5_1:5482880-5482899 None:intergenic 35.0%
TGAAACAAAAGCAATGAGAG+TGG + chr5_1:5482882-5482901 Msa0713320:CDS 35.0%
GAAACAAAAGCAATGAGAGT+GGG + chr5_1:5482883-5482902 Msa0713320:CDS 35.0%
!! TTCACTTTTCATTTCACCCT+TGG - chr5_1:5482996-5483015 None:intergenic 35.0%
GTAATTGCAAGAAACATTGG+TGG + chr5_1:5483040-5483059 Msa0713320:intron 35.0%
!! CCAACATGGCTTTAAAACTA+TGG - chr5_1:5483076-5483095 None:intergenic 35.0%
!!! CCATAGTTTTAAAGCCATGT+TGG + chr5_1:5483073-5483092 Msa0713320:intron 35.0%
TTTCCATGCTCATGTGATAT+AGG + chr5_1:5483107-5483126 Msa0713320:intron 35.0%
TGAAACCTGTGCATATTGAT+AGG - chr5_1:5483240-5483259 None:intergenic 35.0%
ACATTTAAACTGTAGAGCTC+AGG + chr5_1:5483275-5483294 Msa0713320:intron 35.0%
GGCTGAAAATTACAACACAT+CGG + chr5_1:5483398-5483417 Msa0713320:CDS 35.0%
! AATTATAGGGCCATAATGGA+TGG + chr5_1:5483462-5483481 Msa0713320:CDS 35.0%
!! ATTATAGGGCCATAATGGAT+GGG + chr5_1:5483463-5483482 Msa0713320:CDS 35.0%
! ACTTTTACACCCATCCATTA+TGG - chr5_1:5483475-5483494 None:intergenic 35.0%
AATGGATGGGTGTAAAAGTT+TGG + chr5_1:5483476-5483495 Msa0713320:CDS 35.0%
!!! ATTTCAGCTAGCTTTTCTAC+TGG - chr5_1:5483519-5483538 None:intergenic 35.0%
AGCATCTAGAAAGTCTCTAA+GGG - chr5_1:5483568-5483587 None:intergenic 35.0%
TAGCATCTAGAAAGTCTCTA+AGG - chr5_1:5483569-5483588 None:intergenic 35.0%
! AAATATCCCACTTTGTTGTG+AGG + chr5_1:5483588-5483607 Msa0713320:CDS 35.0%
GTTCTGTGATTATGTGTTCG+TGG - chr5_1:5477466-5477485 None:intergenic 40.0%
! CTTCTAGAAGACAACAATGG+CGG + chr5_1:5477485-5477504 Msa0713320:CDS 40.0%
CGGAAATTGAATGTGCATTG+AGG - chr5_1:5477823-5477842 None:intergenic 40.0%
AAAAGCTTCGGTGGAAGTTT+CGG - chr5_1:5477843-5477862 None:intergenic 40.0%
! AGAGGACGATGAAGTGTTTA+GGG + chr5_1:5477957-5477976 Msa0713320:CDS 40.0%
! CGATGAAGTGTTTAGGGTTA+CGG + chr5_1:5477963-5477982 Msa0713320:CDS 40.0%
ACATTTATGGCCGAGATTTC+AGG + chr5_1:5477991-5478010 Msa0713320:CDS 40.0%
AGAGATGAGGAAGACGAATA+AGG + chr5_1:5478135-5478154 Msa0713320:CDS 40.0%
!! GAAGACGAATAAGGTTGATG+TGG + chr5_1:5478144-5478163 Msa0713320:CDS 40.0%
AGTCGTTTGATGAGATTGTG+AGG + chr5_1:5478197-5478216 Msa0713320:CDS 40.0%
TAAGACGTTGAGGAAGTTGT+TGG + chr5_1:5478282-5478301 Msa0713320:CDS 40.0%
GCTTATAGCAGACGAACTTA+TGG + chr5_1:5478519-5478538 Msa0713320:intron 40.0%
TTTGGATACACTCAGAGTGT+CGG + chr5_1:5478926-5478945 Msa0713320:CDS 40.0%
TATCATCTTGTGAGGTCAGA+TGG + chr5_1:5479020-5479039 Msa0713320:CDS 40.0%
! CTCGCATAGGTTGTGATTTT+TGG + chr5_1:5479161-5479180 Msa0713320:intron 40.0%
CAAAATAGGATGACCTGAAG+CGG + chr5_1:5479536-5479555 Msa0713320:intron 40.0%
AAAATAGGATGACCTGAAGC+GGG + chr5_1:5479537-5479556 Msa0713320:intron 40.0%
! ATTTTTCCATAACCCGCTTC+AGG - chr5_1:5479552-5479571 None:intergenic 40.0%
GGATATTCTTGAAGAGGTAG+AGG + chr5_1:5479633-5479652 Msa0713320:intron 40.0%
TATTCTTGAAGAGGTAGAGG+AGG + chr5_1:5479636-5479655 Msa0713320:CDS 40.0%
! CATGTTGAGAGAAGAAGTGT+TGG + chr5_1:5479675-5479694 Msa0713320:CDS 40.0%
CACCAATACAATGCCATTGT+CGG - chr5_1:5479716-5479735 None:intergenic 40.0%
TGGTGGCATGTAAAGATGAA+AGG + chr5_1:5479731-5479750 Msa0713320:CDS 40.0%
CATCACCAACAGTCCAAAAA+AGG + chr5_1:5479777-5479796 Msa0713320:CDS 40.0%
!!! GACAACCTTTTTTGGACTGT+TGG - chr5_1:5479785-5479804 None:intergenic 40.0%
!!! TGCATCGTTGATGGCAATTT+TGG + chr5_1:5480026-5480045 Msa0713320:intron 40.0%
AAACGATACCAAAAGCTCAC+AGG - chr5_1:5480117-5480136 None:intergenic 40.0%
! TGATGGAAGTGTGCTATTCT+TGG + chr5_1:5480747-5480766 Msa0713320:intron 40.0%
! TTGGTTCCTTGAGTTTTTGC+TGG + chr5_1:5480766-5480785 Msa0713320:intron 40.0%
AAAGAAGCCAAAGGATCCTA+AGG + chr5_1:5480929-5480948 Msa0713320:CDS 40.0%
AAGAAGCCAAAGGATCCTAA+GGG + chr5_1:5480930-5480949 Msa0713320:CDS 40.0%
! CAAAGGATCCTAAGGGTTTT+GGG + chr5_1:5480937-5480956 Msa0713320:CDS 40.0%
GTATTCTGTCCAAGGGATAT+GGG - chr5_1:5480981-5481000 None:intergenic 40.0%
TGTATTCTGTCCAAGGGATA+TGG - chr5_1:5480982-5481001 None:intergenic 40.0%
CAGTTTCTGTATTCTGTCCA+AGG - chr5_1:5480989-5481008 None:intergenic 40.0%
CTTGGACAGAATACAGAAAC+TGG + chr5_1:5480987-5481006 Msa0713320:CDS 40.0%
GAGTAACAATAAGGAGGAAG+TGG + chr5_1:5481196-5481215 Msa0713320:CDS 40.0%
AAGTGGCAAGTGGTAAAACT+GGG + chr5_1:5481213-5481232 Msa0713320:CDS 40.0%
GAGTTTGTGAAACCAAACAC+GGG + chr5_1:5481294-5481313 Msa0713320:CDS 40.0%
AGTTTGTGAAACCAAACACG+GGG + chr5_1:5481295-5481314 Msa0713320:CDS 40.0%
AGGGCATAAAAATGTACTGG+TGG - chr5_1:5481395-5481414 None:intergenic 40.0%
GTATAGGCTGATCACTTTCA+AGG - chr5_1:5481415-5481434 None:intergenic 40.0%
TGAAAGTGATCAGCCTATAC+TGG + chr5_1:5481415-5481434 Msa0713320:CDS 40.0%
TTACAAAGGTCATGTCTGGA+TGG - chr5_1:5481472-5481491 None:intergenic 40.0%
TCTCTTACAAAGGTCATGTC+TGG - chr5_1:5481476-5481495 None:intergenic 40.0%
AAGCTGAGAATCCCTCTAAA+AGG + chr5_1:5481510-5481529 Msa0713320:CDS 40.0%
GCAAGTATACGTAGAGAGAA+TGG + chr5_1:5481587-5481606 Msa0713320:CDS 40.0%
GATGATGATTCCAATTGACC+AGG + chr5_1:5481643-5481662 Msa0713320:CDS 40.0%
! TTTGATTCTGGTTGCTGCTT+CGG + chr5_1:5481703-5481722 Msa0713320:intron 40.0%
TATCCACATTCCTATACGGA+AGG - chr5_1:5481751-5481770 None:intergenic 40.0%
CCGTATAGGAATGTGGATAA+TGG + chr5_1:5481752-5481771 Msa0713320:intron 40.0%
TCAATAACCAGAAAAGCAGG+TGG + chr5_1:5481921-5481940 Msa0713320:CDS 40.0%
CAATAACCAGAAAAGCAGGT+GGG + chr5_1:5481922-5481941 Msa0713320:CDS 40.0%
TATGCCTCATATACTTGCCA+TGG + chr5_1:5482010-5482029 Msa0713320:intron 40.0%
! TGCAACATTTCAGGTCATTG+TGG + chr5_1:5482051-5482070 Msa0713320:intron 40.0%
GGATATAGTCACCAACTTCA+AGG - chr5_1:5482147-5482166 None:intergenic 40.0%
CCACGCAAATTAATGGTGAT+AGG - chr5_1:5482168-5482187 None:intergenic 40.0%
!! CCTATCACCATTAATTTGCG+TGG + chr5_1:5482165-5482184 Msa0713320:CDS 40.0%
!! CACCATTAATTTGCGTGGAA+AGG + chr5_1:5482170-5482189 Msa0713320:CDS 40.0%
!! CGTGGAAAGGAAAAGTATTC+AGG + chr5_1:5482183-5482202 Msa0713320:CDS 40.0%
ATACAACCAGGTGGAAACAA+TGG + chr5_1:5482237-5482256 Msa0713320:CDS 40.0%
GGCCCGGTATTATAAAATAC+CGG + chr5_1:5482258-5482277 Msa0713320:CDS 40.0%
! GAAAACTCAATCAAGAGCAC+CGG - chr5_1:5482280-5482299 None:intergenic 40.0%
! GCTCTTGATTGAGTTTTCAC+AGG + chr5_1:5482282-5482301 Msa0713320:CDS 40.0%
GGATAAGAGCTTCTCATTTC+AGG + chr5_1:5482303-5482322 Msa0713320:CDS 40.0%
!! ATGGCTTGTTCATATTCTGG+GGG + chr5_1:5482380-5482399 Msa0713320:intron 40.0%
! AATGCTTGCCGTTACTGTTT+TGG + chr5_1:5482442-5482461 Msa0713320:intron 40.0%
AGTACTAAATATCTGGGCAC+TGG + chr5_1:5482473-5482492 Msa0713320:intron 40.0%
GTACTAAATATCTGGGCACT+GGG + chr5_1:5482474-5482493 Msa0713320:intron 40.0%
CACATCATCACCAATATCAC+TGG - chr5_1:5482728-5482747 None:intergenic 40.0%
! TACTTGCTCTACATTTTCCC+CGG + chr5_1:5482779-5482798 Msa0713320:CDS 40.0%
TCCACAATTCCTTCTTCTGA+CGG - chr5_1:5482913-5482932 None:intergenic 40.0%
TATCACATGAGCATGGAAAC+AGG - chr5_1:5483106-5483125 None:intergenic 40.0%
AAGCCTATATCACATGAGCA+TGG - chr5_1:5483113-5483132 None:intergenic 40.0%
! AAATTACAACACATCGGCTG+TGG + chr5_1:5483404-5483423 Msa0713320:CDS 40.0%
! AAGCTAGCTGAAATAATGGG+TGG + chr5_1:5483525-5483544 Msa0713320:CDS 40.0%
GGACTCACAATTCTCTCATC+AGG + chr5_1:5477506-5477525 Msa0713320:CDS 45.0%
AGAGTGGAGAAGAAGAAGAG+AGG - chr5_1:5477555-5477574 None:intergenic 45.0%
CTTCTCCACTCTTCTTCACA+AGG + chr5_1:5477563-5477582 Msa0713320:CDS 45.0%
TTGGATTTGAGAGTGGGAGA+AGG - chr5_1:5477608-5477627 None:intergenic 45.0%
!!! TTGGTGGTTTTGGGGGTTTA+GGG - chr5_1:5477651-5477670 None:intergenic 45.0%
!!! TTTGGTGGTTTTGGGGGTTT+AGG - chr5_1:5477652-5477671 None:intergenic 45.0%
!!! AGTCGGGATTTGGTGGTTTT+GGG - chr5_1:5477660-5477679 None:intergenic 45.0%
TGATTTCAGTCGGGATTTGG+TGG - chr5_1:5477667-5477686 None:intergenic 45.0%
AGTGATGAAACAAACGTGGC+CGG - chr5_1:5477732-5477751 None:intergenic 45.0%
GAGGAGTGATGAAACAAACG+TGG - chr5_1:5477736-5477755 None:intergenic 45.0%
AGATCAACGATGAGGATTCG+AGG - chr5_1:5477755-5477774 None:intergenic 45.0%
TACCGGAGATTGTTGAGGTA+GGG - chr5_1:5477793-5477812 None:intergenic 45.0%
ATACCGGAGATTGTTGAGGT+AGG - chr5_1:5477794-5477813 None:intergenic 45.0%
ACGCATCGCGATTAAACGAA+CGG - chr5_1:5477880-5477899 None:intergenic 45.0%
! AGCATTTTCTGATCGTCCTC+AGG + chr5_1:5477907-5477926 Msa0713320:CDS 45.0%
!!! GATGGTTTCTGGTTTTGCGA+AGG + chr5_1:5477931-5477950 Msa0713320:CDS 45.0%
! GAGAGGACGATGAAGTGTTT+AGG + chr5_1:5477956-5477975 Msa0713320:CDS 45.0%
ATGTGAGTCAGGAGCTTGAA+AGG + chr5_1:5478017-5478036 Msa0713320:CDS 45.0%
TGTGAGTCAGGAGCTTGAAA+GGG + chr5_1:5478018-5478037 Msa0713320:CDS 45.0%
!! ACCGGATGTGGTGGATATTA+GGG + chr5_1:5478045-5478064 Msa0713320:CDS 45.0%
ACCCTAATATCCACCACATC+CGG - chr5_1:5478049-5478068 None:intergenic 45.0%
GGTTCCGATGACGAAGTATA+TGG + chr5_1:5478066-5478085 Msa0713320:CDS 45.0%
TCCGATGACGAAGTATATGG+TGG + chr5_1:5478069-5478088 Msa0713320:CDS 45.0%
CCCACCATATACTTCGTCAT+CGG - chr5_1:5478073-5478092 None:intergenic 45.0%
CCGATGACGAAGTATATGGT+GGG + chr5_1:5478070-5478089 Msa0713320:CDS 45.0%
CGATGACGAAGTATATGGTG+GGG + chr5_1:5478071-5478090 Msa0713320:CDS 45.0%
!! GACGAATAAGGTTGATGTGG+AGG + chr5_1:5478147-5478166 Msa0713320:CDS 45.0%
! GGTTGATGTGGAGGATTTGA+CGG + chr5_1:5478156-5478175 Msa0713320:CDS 45.0%
AGGATTTGACGGTGGAGAAT+GGG + chr5_1:5478167-5478186 Msa0713320:CDS 45.0%
TGAGATTGTGAGGAGACAGT+TGG + chr5_1:5478207-5478226 Msa0713320:CDS 45.0%
GGAGACAGTTGGATCCAATT+TGG + chr5_1:5478218-5478237 Msa0713320:CDS 45.0%
TGGAGAATCACGGTGAAATG+TGG + chr5_1:5478421-5478440 Msa0713320:intron 45.0%
!! CATGAGCACTGATTGTTGTG+TGG + chr5_1:5478862-5478881 Msa0713320:intron 45.0%
! CGGAGAGTTTTCGTTCTGTT+TGG + chr5_1:5478946-5478965 Msa0713320:CDS 45.0%
AACAAATGCAGTCCACAGCT+TGG - chr5_1:5479259-5479278 None:intergenic 45.0%
GCCTCAACCAGTTCAAATCA+TGG + chr5_1:5479331-5479350 Msa0713320:CDS 45.0%
GCCATGATTTGAACTGGTTG+AGG - chr5_1:5479335-5479354 None:intergenic 45.0%
!! TCTTGGAAGAAGCACCAAAG+TGG + chr5_1:5479371-5479390 Msa0713320:CDS 45.0%
ACACGTAAGACCTTCCACTT+TGG - chr5_1:5479388-5479407 None:intergenic 45.0%
!! AGAGAAGAAGTGTTGGCTGA+AGG + chr5_1:5479682-5479701 Msa0713320:CDS 45.0%
CACCGACAATGGCATTGTAT+TGG + chr5_1:5479711-5479730 Msa0713320:CDS 45.0%
CGACAATGGCATTGTATTGG+TGG + chr5_1:5479714-5479733 Msa0713320:CDS 45.0%
CAGTCAATCACTGCTACAGA+TGG - chr5_1:5480301-5480320 None:intergenic 45.0%
CCAAAACCCTTAGGATCCTT+TGG - chr5_1:5480939-5480958 None:intergenic 45.0%
! CCAAAGGATCCTAAGGGTTT+TGG + chr5_1:5480936-5480955 Msa0713320:CDS 45.0%
GGACAGAATACAGAAACTGG+CGG + chr5_1:5480990-5481009 Msa0713320:CDS 45.0%
AGATACCCCTCAGTCTGATT+TGG + chr5_1:5481094-5481113 Msa0713320:CDS 45.0%
GATACCCCTCAGTCTGATTT+GGG + chr5_1:5481095-5481114 Msa0713320:CDS 45.0%
AATAAGGAGGAAGTGGCAAG+TGG + chr5_1:5481203-5481222 Msa0713320:CDS 45.0%
GAAGTGGCAAGTGGTAAAAC+TGG + chr5_1:5481212-5481231 Msa0713320:CDS 45.0%
! AGCACTAGTTTCACCCATGT+GGG - chr5_1:5481261-5481280 None:intergenic 45.0%
GTTTGTGAAACCAAACACGG+GGG + chr5_1:5481296-5481315 Msa0713320:CDS 45.0%
TTTGTGAAACCAAACACGGG+GGG + chr5_1:5481297-5481316 Msa0713320:CDS 45.0%
TACCGAGGTTCAGAAGTTTG+AGG + chr5_1:5481565-5481584 Msa0713320:CDS 45.0%
TGCCTCAAACTTCTGAACCT+CGG - chr5_1:5481570-5481589 None:intergenic 45.0%
!! TCGGTCCATTGTTCTGGAAA+TGG + chr5_1:5481722-5481741 Msa0713320:intron 45.0%
!! AGGAATGTGGATAATGGGCA+TGG + chr5_1:5481758-5481777 Msa0713320:intron 45.0%
! TGTCCTGCTGTTTATCAGAG+TGG + chr5_1:5481843-5481862 Msa0713320:intron 45.0%
! GTCCTGCTGTTTATCAGAGT+GGG + chr5_1:5481844-5481863 Msa0713320:intron 45.0%
!! TTTTCTCCCACCTGCTTTTC+TGG - chr5_1:5481931-5481950 None:intergenic 45.0%
AAAAGCAGGTGGGAGAAAAG+AGG + chr5_1:5481932-5481951 Msa0713320:CDS 45.0%
TTCAGGTCATTGTGGACATG+CGG + chr5_1:5482059-5482078 Msa0713320:intron 45.0%
ATTCCAGTGACCCTTGAAGT+TGG + chr5_1:5482133-5482152 Msa0713320:CDS 45.0%
CTCTTCCAGAGTTTCACATC+AGG + chr5_1:5482208-5482227 Msa0713320:CDS 45.0%
ATCAGGTCGTCTATACAACC+AGG + chr5_1:5482225-5482244 Msa0713320:CDS 45.0%
! CTTGTTCATATTCTGGGGGT+GGG + chr5_1:5482384-5482403 Msa0713320:intron 45.0%
!!! GGGATGTTGTTTTGACAGGT+AGG + chr5_1:5482404-5482423 Msa0713320:intron 45.0%
TACCAGTCTGCCAGTGATAT+TGG + chr5_1:5482715-5482734 Msa0713320:intron 45.0%
AGACCAGATTATACGTAGCC+GGG - chr5_1:5482800-5482819 None:intergenic 45.0%
GAGACCAGATTATACGTAGC+CGG - chr5_1:5482801-5482820 None:intergenic 45.0%
CCACAATTCCTTCTTCTGAC+GGG - chr5_1:5482912-5482931 None:intergenic 45.0%
GAATTGTGGAAAGTGACGTG+AGG + chr5_1:5482923-5482942 Msa0713320:CDS 45.0%
AAACAGGAGATGCACCAACA+TGG - chr5_1:5483090-5483109 None:intergenic 45.0%
CCTGTGCATATTGATAGGCA+AGG - chr5_1:5483235-5483254 None:intergenic 45.0%
CCTTGCCTATCAATATGCAC+AGG + chr5_1:5483232-5483251 Msa0713320:intron 45.0%
AACTGTAGAGCTCAGGATGT+TGG + chr5_1:5483282-5483301 Msa0713320:intron 45.0%
GGGTTAATGCTGTGATCACA+GGG + chr5_1:5483377-5483396 Msa0713320:intron 45.0%
!! GAGTTTCTAAGACGACTTCC+TGG + chr5_1:5483426-5483445 Msa0713320:CDS 45.0%
TGCTTGCCTCACAACAAAGT+GGG - chr5_1:5483597-5483616 None:intergenic 45.0%
TTGCTTGCCTCACAACAAAG+TGG - chr5_1:5483598-5483617 None:intergenic 45.0%
GTGTGCCTTGTGAAGAAGAG+TGG - chr5_1:5477571-5477590 None:intergenic 50.0%
!!! GGGGGTTTAGGGTTTTGAGA+TGG - chr5_1:5477640-5477659 None:intergenic 50.0%
!!! TCGGGATTTGGTGGTTTTGG+GGG - chr5_1:5477658-5477677 None:intergenic 50.0%
!!! GTCGGGATTTGGTGGTTTTG+GGG - chr5_1:5477659-5477678 None:intergenic 50.0%
!!! CAGTCGGGATTTGGTGGTTT+TGG - chr5_1:5477661-5477680 None:intergenic 50.0%
CGGTGATTTCAGTCGGGATT+TGG - chr5_1:5477670-5477689 None:intergenic 50.0%
GAGAGAGTGACGGTGGTTAA+CGG - chr5_1:5477702-5477721 None:intergenic 50.0%
AGGAATAGAGAGAGTGACGG+TGG - chr5_1:5477709-5477728 None:intergenic 50.0%
CGGAGGAATAGAGAGAGTGA+CGG - chr5_1:5477712-5477731 None:intergenic 50.0%
CGTCACTCTCTCTATTCCTC+CGG + chr5_1:5477710-5477729 Msa0713320:CDS 50.0%
CTCCCTACCTCAACAATCTC+CGG + chr5_1:5477788-5477807 Msa0713320:CDS 50.0%
AAACCAGAAACCATCGCCTG+AGG - chr5_1:5477926-5477945 None:intergenic 50.0%
CTAATATCCACCACATCCGG+TGG - chr5_1:5478046-5478065 None:intergenic 50.0%
!! CACCGGATGTGGTGGATATT+AGG + chr5_1:5478044-5478063 Msa0713320:CDS 50.0%
TGATGTGGAGGATTTGACGG+TGG + chr5_1:5478159-5478178 Msa0713320:CDS 50.0%
GAGGATTTGACGGTGGAGAA+TGG + chr5_1:5478166-5478185 Msa0713320:CDS 50.0%
TCGTAGACTAGGGCTCTGTT+TGG + chr5_1:5478468-5478487 Msa0713320:intron 50.0%
AGATATGCCATGCCAAGCTG+TGG + chr5_1:5479244-5479263 Msa0713320:intron 50.0%
!! GGAAGAAGCACCAAAGTGGA+AGG + chr5_1:5479375-5479394 Msa0713320:CDS 50.0%
GGTAGAGGAGGAAAGACGAA+AGG + chr5_1:5479648-5479667 Msa0713320:CDS 50.0%
GAGGAGGAAAGACGAAAGGA+AGG + chr5_1:5479652-5479671 Msa0713320:CDS 50.0%
GAAGGTGAAGACACCGACAA+TGG + chr5_1:5479700-5479719 Msa0713320:CDS 50.0%
! TTGGTGCTTAACCAATGCCC+CGG + chr5_1:5480684-5480703 Msa0713320:intron 50.0%
AGAATGTTAACCAGTGCCCC+CGG - chr5_1:5480706-5480725 None:intergenic 50.0%
AACTGGCGGCATCAATAAGC+AGG + chr5_1:5481004-5481023 Msa0713320:CDS 50.0%
TCCACCCAAATCAGACTGAG+GGG - chr5_1:5481102-5481121 None:intergenic 50.0%
GTCCACCCAAATCAGACTGA+GGG - chr5_1:5481103-5481122 None:intergenic 50.0%
TGTCCACCCAAATCAGACTG+AGG - chr5_1:5481104-5481123 None:intergenic 50.0%
GATTTGGGTGGACATGTTCG+TGG + chr5_1:5481110-5481129 Msa0713320:CDS 50.0%
GGTGGACATGTTCGTGGAAA+AGG + chr5_1:5481116-5481135 Msa0713320:CDS 50.0%
! CAGCACTAGTTTCACCCATG+TGG - chr5_1:5481262-5481281 None:intergenic 50.0%
TACAGATATCCCCCCGTGTT+TGG - chr5_1:5481309-5481328 None:intergenic 50.0%
GCATACCTTTCCTGATGCCA+TGG + chr5_1:5481349-5481368 Msa0713320:CDS 50.0%
TCTTGCCATGGCATCAGGAA+AGG - chr5_1:5481357-5481376 None:intergenic 50.0%
CTGATGCCATGGCAAGAGAT+GGG + chr5_1:5481360-5481379 Msa0713320:CDS 50.0%
GGCAGCCATTTCCAGAACAA+TGG - chr5_1:5481730-5481749 None:intergenic 50.0%
GAAATGGCTGCCTTCCGTAT+AGG + chr5_1:5481738-5481757 Msa0713320:intron 50.0%
CTGCCTTCCGTATAGGAATG+TGG + chr5_1:5481745-5481764 Msa0713320:intron 50.0%
TATCAGAGTGGGCGTGGTTT+AGG + chr5_1:5481855-5481874 Msa0713320:intron 50.0%
TCAGGTCATTGTGGACATGC+GGG + chr5_1:5482060-5482079 Msa0713320:intron 50.0%
TCACCAACTTCAAGGGTCAC+TGG - chr5_1:5482139-5482158 None:intergenic 50.0%
GACGACCTGATGTGAAACTC+TGG - chr5_1:5482216-5482235 None:intergenic 50.0%
AGGTCGTCTATACAACCAGG+TGG + chr5_1:5482228-5482247 Msa0713320:CDS 50.0%
! GCTTGTTCATATTCTGGGGG+TGG + chr5_1:5482383-5482402 Msa0713320:intron 50.0%
!!! GGGTGGGATGTTGTTTTGAC+AGG + chr5_1:5482400-5482419 Msa0713320:intron 50.0%
CACCAATATCACTGGCAGAC+TGG - chr5_1:5482720-5482739 None:intergenic 50.0%
TTCCCCGGCTACGTATAATC+TGG + chr5_1:5482794-5482813 Msa0713320:CDS 50.0%
GACCAGATTATACGTAGCCG+GGG - chr5_1:5482799-5482818 None:intergenic 50.0%
CCCGTCAGAAGAAGGAATTG+TGG + chr5_1:5482909-5482928 Msa0713320:CDS 50.0%
AAGGTAGCTTCATGCTGCCA+AGG + chr5_1:5482976-5482995 Msa0713320:intron 50.0%
AGGTAGCTTCATGCTGCCAA+GGG + chr5_1:5482977-5482996 Msa0713320:intron 50.0%
GGGGTTAATGCTGTGATCAC+AGG + chr5_1:5483376-5483395 Msa0713320:intron 50.0%
AGGTCGGCGGTGATTTCAGT+CGG - chr5_1:5477677-5477696 None:intergenic 55.0%
GATGAAACAAACGTGGCCGG+AGG - chr5_1:5477729-5477748 None:intergenic 55.0%
TTCTGATCGTCCTCAGGCGA+TGG + chr5_1:5477913-5477932 Msa0713320:CDS 55.0%
!!! CTGGTTTTGCGAAGGCAGAG+AGG + chr5_1:5477939-5477958 Msa0713320:CDS 55.0%
GGAGCTTGAAAGGGATCCAC+CGG + chr5_1:5478027-5478046 Msa0713320:CDS 55.0%
TGAAAGGGATCCACCGGATG+TGG + chr5_1:5478033-5478052 Msa0713320:CDS 55.0%
ATGCAGTCCACAGCTTGGCA+TGG - chr5_1:5479254-5479273 None:intergenic 55.0%
!! GGATGACCTGAAGCGGGTTA+TGG + chr5_1:5479543-5479562 Msa0713320:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+CGG + chr5_1:5480554-5480573 Msa0713320:intron 55.0%
TCTTGTTAACCAGTGCCCCC+GGG + chr5_1:5480555-5480574 Msa0713320:intron 55.0%
ATTCCTTAACCAGTGCCCCG+GGG - chr5_1:5480574-5480593 None:intergenic 55.0%
CATTCCTTAACCAGTGCCCC+GGG - chr5_1:5480575-5480594 None:intergenic 55.0%
GCATTCCTTAACCAGTGCCC+CGG - chr5_1:5480576-5480595 None:intergenic 55.0%
TGGTGCTTAACCAATGCCCC+GGG + chr5_1:5480685-5480704 Msa0713320:intron 55.0%
AATGTTAACCAGTGCCCCCG+GGG - chr5_1:5480704-5480723 None:intergenic 55.0%
GAATGTTAACCAGTGCCCCC+GGG - chr5_1:5480705-5480724 None:intergenic 55.0%
GGAGTCACTCCCATATCCCT+TGG + chr5_1:5480969-5480988 Msa0713320:CDS 55.0%
! GCAGGAGCATGATGCACTTC+TGG + chr5_1:5481022-5481041 Msa0713320:CDS 55.0%
!! ACCCCTCAGTCTGATTTGGG+TGG + chr5_1:5481098-5481117 Msa0713320:CDS 55.0%
CCATCTCTTGCCATGGCATC+AGG - chr5_1:5481362-5481381 None:intergenic 55.0%
CCTGATGCCATGGCAAGAGA+TGG + chr5_1:5481359-5481378 Msa0713320:CDS 55.0%
TGGCTTCCCATCTCTTGCCA+TGG - chr5_1:5481369-5481388 None:intergenic 55.0%
GCTGCTTCGGTCCATTGTTC+TGG + chr5_1:5481716-5481735 Msa0713320:intron 55.0%
CGCCCACTCTGATAAACAGC+AGG - chr5_1:5481849-5481868 None:intergenic 55.0%
GCTGTTTATCAGAGTGGGCG+TGG + chr5_1:5481849-5481868 Msa0713320:intron 55.0%
ACCAGGTGGAAACAATGGCC+CGG + chr5_1:5482242-5482261 Msa0713320:CDS 55.0%
GGTCGGCGGTGATTTCAGTC+GGG - chr5_1:5477676-5477695 None:intergenic 60.0%
ACGGTGGTTAACGGCGAGGT+CGG - chr5_1:5477693-5477712 None:intergenic 60.0%
AGTGACGGTGGTTAACGGCG+AGG - chr5_1:5477697-5477716 None:intergenic 60.0%
CGTCCTCAGGCGATGGTTTC+TGG + chr5_1:5477920-5477939 Msa0713320:CDS 60.0%
AAGGGATCCACCGGATGTGG+TGG + chr5_1:5478036-5478055 Msa0713320:CDS 60.0%
CTTGTTAACCAGTGCCCCCG+GGG + chr5_1:5480556-5480575 Msa0713320:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG - chr5_1:5480573-5480592 None:intergenic 60.0%
GGTGCTTAACCAATGCCCCG+GGG + chr5_1:5480686-5480705 Msa0713320:intron 60.0%
GTGCTTAACCAATGCCCCGG+GGG + chr5_1:5480687-5480706 Msa0713320:intron 60.0%
ACCGGGCCATTGTTTCCACC+TGG - chr5_1:5482246-5482265 None:intergenic 60.0%
GTGGGTGTCCCGTCAGAAGA+AGG + chr5_1:5482901-5482920 Msa0713320:CDS 60.0%
GTGGTTAACGGCGAGGTCGG+CGG - chr5_1:5477690-5477709 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr5_1:5480568-5480587 Msa0713320:intron 70.0%
! AACCAATGCCCCGGGGGCAC+TGG + chr5_1:5480693-5480712 Msa0713320:intron 70.0%
AACCAGTGCCCCCGGGGCAT+TGG - chr5_1:5480698-5480717 None:intergenic 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr5_1:5480562-5480581 Msa0713320:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr5_1:5480567-5480586 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5477346 5483750 5477346 ID=Msa0713320;Name=Msa0713320
chr5_1 mRNA 5477346 5483750 5477346 ID=Msa0713320-mRNA-1;Parent=Msa0713320;Name=Msa0713320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|1|9|142|984
chr5_1 exon 5477346 5478317 5477346 ID=Msa0713320-mRNA-1:exon:2369;Parent=Msa0713320-mRNA-1
chr5_1 exon 5478899 5479122 5478899 ID=Msa0713320-mRNA-1:exon:2370;Parent=Msa0713320-mRNA-1
chr5_1 exon 5479320 5479405 5479320 ID=Msa0713320-mRNA-1:exon:2371;Parent=Msa0713320-mRNA-1
chr5_1 exon 5479634 5479798 5479634 ID=Msa0713320-mRNA-1:exon:2372;Parent=Msa0713320-mRNA-1
chr5_1 exon 5480861 5481664 5480861 ID=Msa0713320-mRNA-1:exon:2373;Parent=Msa0713320-mRNA-1
chr5_1 exon 5481861 5481971 5481861 ID=Msa0713320-mRNA-1:exon:2374;Parent=Msa0713320-mRNA-1
chr5_1 exon 5482064 5482324 5482064 ID=Msa0713320-mRNA-1:exon:2375;Parent=Msa0713320-mRNA-1
chr5_1 exon 5482721 5482944 5482721 ID=Msa0713320-mRNA-1:exon:2376;Parent=Msa0713320-mRNA-1
chr5_1 exon 5483398 5483750 5483398 ID=Msa0713320-mRNA-1:exon:2377;Parent=Msa0713320-mRNA-1
chr5_1 five_prime_UTR 5477346 5477448 5477346 ID=Msa0713320-mRNA-1:five_prime_utr;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5477449 5478317 5477449 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5478899 5479122 5478899 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5479320 5479405 5479320 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5479634 5479798 5479634 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5480861 5481664 5480861 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5481861 5481971 5481861 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5482064 5482324 5482064 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5482721 5482944 5482721 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 CDS 5483398 5483608 5483398 ID=Msa0713320-mRNA-1:cds;Parent=Msa0713320-mRNA-1
chr5_1 three_prime_UTR 5483609 5483750 5483609 ID=Msa0713320-mRNA-1:three_prime_utr;Parent=Msa0713320-mRNA-1
Gene Sequence

>Msa0713320

ATGGTTCTTCAATTCCACGAACACATAATCACAGAACTTCTAGAAGACAACAATGGCGGACTCACAATTCTCTCATCAGGTCTCTCCTTATCAAAACTCATCTCCTCTCTTCTTCTTCTCCACTCTTCTTCACAAGGCACACTTCTCATTCTCTCTCCTTCTCCCACTCTCAAATCCAAAATCAATTTCCATCTCAAAACCCTAAACCCCCAAAACCACCAAATCCCGACTGAAATCACCGCCGACCTCGCCGTTAACCACCGTCACTCTCTCTATTCCTCCGGCCACGTTTGTTTCATCACTCCTCGAATCCTCATCGTTGATCTTTTAACAAACAAACTCCCTACCTCAACAATCTCCGGTATATTAATCCTCAATGCACATTCAATTTCCGAAACTTCCACCGAAGCTTTTATTGTAAGAATTTTCCGTTCGTTTAATCGCGATGCGTATGTTAGAGCATTTTCTGATCGTCCTCAGGCGATGGTTTCTGGTTTTGCGAAGGCAGAGAGGACGATGAAGTGTTTAGGGTTACGGAAGTTACATTTATGGCCGAGATTTCAGGTTTATGTGAGTCAGGAGCTTGAAAGGGATCCACCGGATGTGGTGGATATTAGGGTTCCGATGACGAAGTATATGGTGGGGATTCAGAAAGCGATTGTTGAAGTTATGGATGCATGTTTGAAAGAGATGAGGAAGACGAATAAGGTTGATGTGGAGGATTTGACGGTGGAGAATGGGTTGTTTAAGTCGTTTGATGAGATTGTGAGGAGACAGTTGGATCCAATTTGGCATACTTTAGGGAAGAAGACTAAGCAGCTTGTTTCTGATCTTAAGACGTTGAGGAAGTTGTTGGATTATCTAGTCAGGTATGATGCGGTGACTTACTTGAAATATTTGGATACACTCAGAGTGTCGGAGAGTTTTCGTTCTGTTTGGATATTTGCAGAGGCAAGCTATAAGATATTTGACTATGCAAAGAAACGTGTTTATCATCTTGTGAGGTCAGATGGTGTGAAATTGAACGAGTCTAGTAAGAATGTCAAAAACAAAAAGAAAAAAGGCAAAGGGGATAATGAAGACACTGAAGAAGCTGATGTCACTGCCTCAACCAGTTCAAATCATGGCATAGTATTGGAAGAAGTCTTGGAAGAAGCACCAAAGTGGAAGGTCTTACGTGATATTCTTGAAGAGGTAGAGGAGGAAAGACGAAAGGAAGGCATGTTGAGAGAAGAAGTGTTGGCTGAAGGTGAAGACACCGACAATGGCATTGTATTGGTGGCATGTAAAGATGAAAGGTCGTGCTTGCAGCTTGAAGAATGCATCACCAACAGTCCAAAAAAGGTCATTCAAGATGAATGGAAGAAGTACTTACTGAACAAAGTACAACTGCGTGATGTAGTGCATAAGAAAAAGAAGCCAAAGGATCCTAAGGGTTTTGGGATTCTTAATGGAGTCACTCCCATATCCCTTGGACAGAATACAGAAACTGGCGGCATCAATAAGCAGGAGCATGATGCACTTCTGGCAGCAGCTTCGAAACTGCGAAATCTTTCTGAAAAAAATCATGTTGTTGAAGATACCCCTCAGTCTGATTTGGGTGGACATGTTCGTGGAAAAGGCAAGAGAAAATTGGGGAATAGAAATGGCCCAATCATTATTGATGGCTCTAGTGTTCAGAGTAACAATAAGGAGGAAGTGGCAAGTGGTAAAACTGGGATATCCGATTCAAAAAATAAAGCCCACATGGGTGAAACTAGTGCTGTCAGTAATGATAGAGTTTGTGAAACCAAACACGGGGGGATATCTGTAGACGATGCAGTTCTTCGGAGGCATACCTTTCCTGATGCCATGGCAAGAGATGGGAAGCCACTACCACCAGTACATTTTTATGCCCTTGAAAGTGATCAGCCTATACTGGACATATTAAAGCCCTCTATAATTGTCGTTTACCATCCAGACATGACCTTTGTAAGAGAAATCGAAGTCTACAAAGCTGAGAATCCCTCTAAAAGGTTAAAGGTATACTTTATTTTCTATGAAGATTCTACCGAGGTTCAGAAGTTTGAGGCAAGTATACGTAGAGAGAATGGAGCATTTGAATCTTTGATCAGACAAAAATCTATGATGATGATTCCAATTGACCAGAGTGGGCGTGGTTTAGGATTTAATTCTACCCTAGATTCAGATTTAAATACTACCCAGAACTCAATAACCAGAAAAGCAGGTGGGAGAAAAGAGGTTGATAAAGAAATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTTCCAAATATTCTTCATCAAAAGGGAATGCGCATAATTCCAGTGACCCTTGAAGTTGGTGACTATATCCTATCACCATTAATTTGCGTGGAAAGGAAAAGTATTCAGGATCTCTTCCAGAGTTTCACATCAGGTCGTCTATACAACCAGGTGGAAACAATGGCCCGGTATTATAAAATACCGGTGCTCTTGATTGAGTTTTCACAGGATAAGAGCTTCTCATTTCAGTCTGCCAGTGATATTGGTGATGATGTGACGCCCAATAGCATTATATCAAAGTTGTCATTACTTGCTCTACATTTTCCCCGGCTACGTATAATCTGGTCTCGAAGTTTGCATGCAACATCTGAAATATTTGCTTCACTAAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTCCCGTCAGAAGAAGGAATTGTGGAAAGTGACGTGAGGGCTGAAAATTACAACACATCGGCTGTGGAGTTTCTAAGACGACTTCCTGGTGTTACAGATTCTAATTATAGGGCCATAATGGATGGGTGTAAAAGTTTGGCAGAACTTGCACTTCTTCCAGTAGAAAAGCTAGCTGAAATAATGGGTGGTCATAAAGCTGCTCGTACCCTTAGAGACTTTCTAGATGCTAAATATCCCACTTTGTTGTGA
Protein sequence

>Msa0713320

MVLQFHEHIITELLEDNNGGLTILSSGLSLSKLISSLLLLHSSSQGTLLILSPSPTLKSKINFHLKTLNPQNHQIPTEITADLAVNHRHSLYSSGHVCFITPRILIVDLLTNKLPTSTISGILILNAHSISETSTEAFIVRIFRSFNRDAYVRAFSDRPQAMVSGFAKAERTMKCLGLRKLHLWPRFQVYVSQELERDPPDVVDIRVPMTKYMVGIQKAIVEVMDACLKEMRKTNKVDVEDLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIFAEASYKIFDYAKKRVYHLVRSDGVKLNESSKNVKNKKKKGKGDNEDTEEADVTASTSSNHGIVLEEVLEEAPKWKVLRDILEEVEEERRKEGMLREEVLAEGEDTDNGIVLVACKDERSCLQLEECITNSPKKVIQDEWKKYLLNKVQLRDVVHKKKKPKDPKGFGILNGVTPISLGQNTETGGINKQEHDALLAAASKLRNLSEKNHVVEDTPQSDLGGHVRGKGKRKLGNRNGPIIIDGSSVQSNNKEEVASGKTGISDSKNKAHMGETSAVSNDRVCETKHGGISVDDAVLRRHTFPDAMARDGKPLPPVHFYALESDQPILDILKPSIIVVYHPDMTFVREIEVYKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQKSMMMIPIDQSGRGLGFNSTLDSDLNTTQNSITRKAGGRKEVDKEMQVIVDMREFMSSLPNILHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFQSFTSGRLYNQVETMARYYKIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATSEIFASLKANQDEPDETKAMRVGVPSEEGIVESDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCKSLAELALLPVEKLAEIMGGHKAARTLRDFLDAKYPTLL*