Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840850 | XP_003612700.1 | 97.333 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 2.10e-98 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840850 | G7K9J9 | 97.333 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 1.00e-98 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032840 | Msa0840850 | 0.829662 | 4.540333e-55 | -8.615850e-47 |
| Msa0050940 | Msa0840850 | -0.800139 | 1.658257e-48 | -8.615850e-47 |
| Msa0053110 | Msa0840850 | -0.800962 | 1.126790e-48 | -8.615850e-47 |
| Msa0105420 | Msa0840850 | -0.820791 | 5.691731e-53 | -8.615850e-47 |
| Msa0110970 | Msa0840850 | -0.810742 | 9.908835e-51 | -8.615850e-47 |
| Msa0114540 | Msa0840850 | 0.826932 | 2.068136e-54 | -8.615850e-47 |
| Msa0120330 | Msa0840850 | -0.831443 | 1.664638e-55 | -8.615850e-47 |
| Msa0642650 | Msa0840850 | -0.811213 | 7.833980e-51 | -8.615850e-47 |
| Msa0702350 | Msa0840850 | -0.818940 | 1.507467e-52 | -8.615850e-47 |
| Msa0702680 | Msa0840850 | -0.808633 | 2.813882e-50 | -8.615850e-47 |
| Msa0740420 | Msa0840850 | -0.822391 | 2.429502e-53 | -8.615850e-47 |
| Msa0743680 | Msa0840850 | -0.802868 | 4.572966e-49 | -8.615850e-47 |
| Msa0754720 | Msa0840850 | 0.815282 | 1.001458e-51 | -8.615850e-47 |
| Msa0761580 | Msa0840850 | -0.809232 | 2.094478e-50 | -8.615850e-47 |
| Msa0762210 | Msa0840850 | -0.800845 | 1.190677e-48 | -8.615850e-47 |
| Msa0787750 | Msa0840850 | -0.800794 | 1.219392e-48 | -8.615850e-47 |
| Msa0820670 | Msa0840850 | -0.822016 | 2.967807e-53 | -8.615850e-47 |
| Msa0829620 | Msa0840850 | -0.810254 | 1.263235e-50 | -8.615850e-47 |
| Msa0840850 | Msa0842230 | -0.805871 | 1.082782e-49 | -8.615850e-47 |
| Msa0840850 | Msa0852730 | -0.802404 | 5.701836e-49 | -8.615850e-47 |
| Msa0840850 | Msa0867890 | -0.801415 | 9.103249e-49 | -8.615850e-47 |
| Msa0840850 | Msa0922540 | -0.801351 | 9.381552e-49 | -8.615850e-47 |
| Msa0840850 | Msa0977320 | -0.800168 | 1.635401e-48 | -8.615850e-47 |
| Msa0840850 | Msa0990520 | -0.808382 | 3.183417e-50 | -8.615850e-47 |
| Msa0840850 | Msa1009000 | -0.843903 | 1.052188e-58 | -8.615850e-47 |
| Msa0840850 | Msa1012810 | -0.809911 | 1.497525e-50 | -8.615850e-47 |
| Msa0840850 | Msa1014270 | -0.823355 | 1.448539e-53 | -8.615850e-47 |
| Msa0840850 | Msa1041530 | -0.801439 | 8.999751e-49 | -8.615850e-47 |
| Msa0840850 | Msa1055260 | -0.836722 | 7.920300e-57 | -8.615850e-47 |
| Msa0840850 | Msa1055280 | -0.842444 | 2.577009e-58 | -8.615850e-47 |
| Msa0840850 | Msa1078710 | -0.820764 | 5.772387e-53 | -8.615850e-47 |
| Msa0840850 | Msa1098560 | -0.821211 | 4.554134e-53 | -8.615850e-47 |
| Msa0840850 | Msa1123880 | -0.815757 | 7.850885e-52 | -8.615850e-47 |
| Msa0840850 | Msa1124680 | 0.813636 | 2.315791e-51 | -8.615850e-47 |
| Msa0840850 | Msa1127950 | -0.808721 | 2.694445e-50 | -8.615850e-47 |
| Msa0840850 | Msa1133710 | -0.813993 | 1.931517e-51 | -8.615850e-47 |
| Msa0840850 | Msa1159100 | -0.801965 | 7.021064e-49 | -8.615850e-47 |
| Msa0840850 | Msa1178160 | -0.816521 | 5.299298e-52 | -8.615850e-47 |
| Msa0840850 | Msa1211090 | -0.824234 | 9.013393e-54 | -8.615850e-47 |
| Msa0840850 | Msa1222970 | -0.808475 | 3.041319e-50 | -8.615850e-47 |
| Msa0840850 | Msa1224830 | -0.815905 | 7.274425e-52 | -8.615850e-47 |
| Msa0840850 | Msa1228210 | -0.802953 | 4.392714e-49 | -8.615850e-47 |
| Msa0840850 | Msa1228290 | -0.806602 | 7.595908e-50 | -8.615850e-47 |
| Msa0840850 | Msa1236100 | -0.813225 | 2.850655e-51 | -8.615850e-47 |
| Msa0840850 | Msa1264020 | -0.802595 | 5.206973e-49 | -8.615850e-47 |
| Msa0840850 | Msa1269580 | 0.824422 | 8.143450e-54 | -8.615850e-47 |
| Msa0840850 | Msa1320740 | -0.803966 | 2.709157e-49 | -8.615850e-47 |
| Msa0840850 | Msa1351760 | -0.820367 | 7.121107e-53 | -8.615850e-47 |
| Msa0840850 | Msa1362510 | -0.822828 | 1.922226e-53 | -8.615850e-47 |
| Msa0840850 | Msa1364470 | 0.805472 | 1.313250e-49 | -8.615850e-47 |
| Msa0840850 | Msa1373510 | -0.800800 | 1.215685e-48 | -8.615850e-47 |
| Msa0840850 | Msa1390310 | -0.854705 | 1.030020e-61 | -8.615850e-47 |
| Msa0840850 | Msa1398860 | -0.810923 | 9.054955e-51 | -8.615850e-47 |
| Msa0840850 | Msa1414930 | -0.818360 | 2.041679e-52 | -8.615850e-47 |
| Msa0840850 | Msa1429360 | 0.824890 | 6.315805e-54 | -8.615850e-47 |
| Msa0840850 | Msa1445790 | -0.813272 | 2.784282e-51 | -8.615850e-47 |
| Msa0143080 | Msa0840850 | -0.805691 | 1.181168e-49 | -8.615850e-47 |
| Msa0168100 | Msa0840850 | -0.804390 | 2.210537e-49 | -8.615850e-47 |
| Msa0172350 | Msa0840850 | -0.836360 | 9.795031e-57 | -8.615850e-47 |
| Msa0172960 | Msa0840850 | 0.824525 | 7.700264e-54 | -8.615850e-47 |
| Msa0191250 | Msa0840850 | -0.803129 | 4.039541e-49 | -8.615850e-47 |
| Msa0196130 | Msa0840850 | 0.823170 | 1.600094e-53 | -8.615850e-47 |
| Msa0230550 | Msa0840850 | 0.830880 | 2.288709e-55 | -8.615850e-47 |
| Msa0235980 | Msa0840850 | -0.807908 | 4.016497e-50 | -8.615850e-47 |
| Msa0393680 | Msa0840850 | -0.811379 | 7.211465e-51 | -8.615850e-47 |
| Msa0411520 | Msa0840850 | -0.806940 | 6.443000e-50 | -8.615850e-47 |
| Msa0429520 | Msa0840850 | 0.817273 | 3.592110e-52 | -8.615850e-47 |
| Msa0430820 | Msa0840850 | -0.825412 | 4.755536e-54 | -8.615850e-47 |
| Msa0436280 | Msa0840850 | 0.826344 | 2.857005e-54 | -8.615850e-47 |
| Msa0469910 | Msa0840850 | 0.815705 | 8.062158e-52 | -8.615850e-47 |
| Msa0238890 | Msa0840850 | -0.854030 | 1.613938e-61 | -8.615850e-47 |
| Msa0259560 | Msa0840850 | -0.817908 | 2.583783e-52 | -8.615850e-47 |
| Msa0267760 | Msa0840850 | -0.838866 | 2.228890e-57 | -8.615850e-47 |
| Msa0289890 | Msa0840850 | -0.805197 | 1.499254e-49 | -8.615850e-47 |
| Msa0308830 | Msa0840850 | -0.818165 | 2.260364e-52 | -8.615850e-47 |
| Msa0311860 | Msa0840850 | -0.805270 | 1.447800e-49 | -8.615850e-47 |
| Msa0314480 | Msa0840850 | -0.805835 | 1.101790e-49 | -8.615850e-47 |
| Msa0320100 | Msa0840850 | -0.801835 | 7.466248e-49 | -8.615850e-47 |
| Msa0517340 | Msa0840850 | -0.800659 | 1.298964e-48 | -8.615850e-47 |
| Msa0526700 | Msa0840850 | -0.830341 | 3.101392e-55 | -8.615850e-47 |
| Msa0526710 | Msa0840850 | -0.833060 | 6.623276e-56 | -8.615850e-47 |
| Msa0547140 | Msa0840850 | -0.810260 | 1.259250e-50 | -8.615850e-47 |
| Msa0590680 | Msa0840850 | -0.802813 | 4.695014e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840850 | MtrunA17_Chr5g0410051 | 97.333 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 1.93e-102 | 290 |
| Msa0840850 | MtrunA17_Chr8g0375551 | 35.526 | 76 | 49 | 0 | 50 | 125 | 45 | 120 | 3.17e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0840850 | AT1G31940.1 | 68.000 | 150 | 45 | 3 | 1 | 149 | 1 | 148 | 3.93e-61 | 186 |
| Msa0840850 | AT2G35585.1 | 59.091 | 154 | 57 | 3 | 1 | 150 | 1 | 152 | 5.19e-55 | 170 |
| Msa0840850 | AT2G35585.2 | 67.470 | 83 | 25 | 1 | 1 | 83 | 1 | 81 | 3.56e-32 | 111 |
Find 62 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATTGATAAACAATAAA+TGG | 0.225069 | 5_4:+16686432 | None:intergenic |
| GATATACATAACGCATATTC+TGG | 0.229473 | 5_4:+16682810 | None:intergenic |
| GCTGCCACCTCTGAGTTTGC+AGG | 0.300221 | 5_4:+16684639 | None:intergenic |
| CTAAAACTTCTTGAAGAATC+AGG | 0.316902 | 5_4:-16682943 | Msa0840850:CDS |
| CTTTGTAATTATTATACATA+TGG | 0.321855 | 5_4:+16682788 | None:intergenic |
| CGTCTTACATTAAGAATAGA+TGG | 0.331681 | 5_4:+16684489 | None:intergenic |
| ATAATTCGAATTTCTTCTTT+CGG | 0.360445 | 5_4:-16682724 | Msa0840850:three_prime_UTR |
| GCATGAAACGGGTTCTGATC+CGG | 0.380139 | 5_4:+16686285 | None:intergenic |
| GAATAGATGGTTCTGGCAAC+GGG | 0.396306 | 5_4:+16684502 | None:intergenic |
| TTACTTGGCGTGTAGGATGA+TGG | 0.401810 | 5_4:+16686362 | None:intergenic |
| GAAGAATCAGGCATCTAAAC+TGG | 0.403786 | 5_4:-16682931 | Msa0840850:exon |
| ATAATCAGGATGGAAGAATA+TGG | 0.406041 | 5_4:-16683125 | Msa0840850:intron |
| TCTGGCAACGGGCACTGAAT+TGG | 0.410974 | 5_4:+16684513 | None:intergenic |
| ACATTAAGAATAGATGGTTC+TGG | 0.414371 | 5_4:+16684495 | None:intergenic |
| GGTTCAACGGGATGTTCAAC+TGG | 0.450563 | 5_4:+16684552 | None:intergenic |
| AAATCAGTGGTTGCATGAAA+CGG | 0.458606 | 5_4:+16686273 | None:intergenic |
| TCATTATCAAGGGGTTCAAC+GGG | 0.459693 | 5_4:+16684540 | None:intergenic |
| CATGAAACGGGTTCTGATCC+GGG | 0.465281 | 5_4:+16686286 | None:intergenic |
| AATCAGTGGTTGCATGAAAC+GGG | 0.466427 | 5_4:+16686274 | None:intergenic |
| GAGGAGAGGAATCGTTTACT+TGG | 0.468631 | 5_4:+16686347 | None:intergenic |
| GCTGCTACTGCAACTTCTCA+TGG | 0.475047 | 5_4:-16684600 | Msa0840850:CDS |
| TACTTGGCGTGTAGGATGAT+GGG | 0.476346 | 5_4:+16686363 | None:intergenic |
| GATCTTCGCGGCCGAGGAGC+AGG | 0.480306 | 5_4:+16683018 | None:intergenic |
| ATCATTATCAAGGGGTTCAA+CGG | 0.491883 | 5_4:+16684539 | None:intergenic |
| AGAATAGATGGTTCTGGCAA+CGG | 0.495108 | 5_4:+16684501 | None:intergenic |
| GGCGTGTAGGATGATGGGTT+TGG | 0.495666 | 5_4:+16686368 | None:intergenic |
| ATATACATAACGCATATTCT+GGG | 0.509235 | 5_4:+16682811 | None:intergenic |
| AGGCGATCTGCCAGTAATGA+AGG | 0.511434 | 5_4:-16683070 | Msa0840850:CDS |
| GAATTTCATCAACTTATATG+TGG | 0.525259 | 5_4:-16682877 | Msa0840850:three_prime_UTR |
| GAATTGGTCGATCATTATCA+AGG | 0.530282 | 5_4:+16684529 | None:intergenic |
| GAGTGAGATCTTCGCGGCCG+AGG | 0.534691 | 5_4:+16683012 | None:intergenic |
| TCTGCTACCGTGCGTAGAAG+AGG | 0.536224 | 5_4:-16683090 | Msa0840850:CDS |
| AGAGAGAAAGAGTTGAGGAG+AGG | 0.537128 | 5_4:+16686333 | None:intergenic |
| GAATCGTTTACTTGGCGTGT+AGG | 0.540750 | 5_4:+16686355 | None:intergenic |
| GGGCACTTTGTGTTCGTCGA+TGG | 0.540755 | 5_4:+16686085 | None:intergenic |
| TTCATATTGTGCAGGATGAG+AGG | 0.549681 | 5_4:-16684671 | Msa0840850:intron |
| GTTTCAAGCTGAACTTGACC+CGG | 0.550159 | 5_4:-16686304 | Msa0840850:five_prime_UTR |
| AGTCTGAAGGTCCTGCTCCT+CGG | 0.551322 | 5_4:-16683029 | Msa0840850:CDS |
| AATTGGTCGATCATTATCAA+GGG | 0.561117 | 5_4:+16684530 | None:intergenic |
| AGATGAGAGAGAAAGAGTTG+AGG | 0.566224 | 5_4:+16686328 | None:intergenic |
| ATCTGCCAGTAATGAAGGAA+GGG | 0.569466 | 5_4:-16683065 | Msa0840850:CDS |
| CGATTAGAGTGAGATCTTCG+CGG | 0.570292 | 5_4:+16683006 | None:intergenic |
| ATGGATTTAATTTGATACAC+CGG | 0.571364 | 5_4:+16686451 | None:intergenic |
| GATCTGCCAGTAATGAAGGA+AGG | 0.572044 | 5_4:-16683066 | Msa0840850:CDS |
| TCATATTGTGCAGGATGAGA+GGG | 0.588693 | 5_4:-16684670 | Msa0840850:intron |
| TGTAGAAAACTTTACACTGC+CGG | 0.600139 | 5_4:-16686470 | Msa0840850:five_prime_UTR |
| TGTGCAGGATGAGAGGGAAG+TGG | 0.602862 | 5_4:-16684664 | Msa0840850:intron |
| AATAAGCTCAAACTTAACAA+TGG | 0.604327 | 5_4:+16682700 | None:intergenic |
| CAGGAGCACTAAGAGATGGT+AGG | 0.611171 | 5_4:+16682977 | None:intergenic |
| GGCGCCTGCAAACTCAGAGG+TGG | 0.611681 | 5_4:-16684643 | Msa0840850:CDS |
| TGCTCAGGAGCACTAAGAGA+TGG | 0.615904 | 5_4:+16682973 | None:intergenic |
| AACTTCTCATGGAATTGAAG+TGG | 0.616117 | 5_4:-16684589 | Msa0840850:CDS |
| TCGACGAACACAAAGTGCCC+TGG | 0.616207 | 5_4:-16686082 | Msa0840850:intron |
| TCTGCCAGTAATGAAGGAAG+GGG | 0.618044 | 5_4:-16683064 | Msa0840850:CDS |
| GGAGGAGCACTTGAGTCTGA+AGG | 0.620083 | 5_4:-16683042 | Msa0840850:CDS |
| CATATGTATAATAATTACAA+AGG | 0.633859 | 5_4:-16682787 | Msa0840850:three_prime_UTR |
| ATTGGTCGATCATTATCAAG+GGG | 0.658159 | 5_4:+16684531 | None:intergenic |
| TATACATAACGCATATTCTG+GGG | 0.661756 | 5_4:+16682812 | None:intergenic |
| CAGATCGCCTCTTCTACGCA+CGG | 0.667684 | 5_4:+16683083 | None:intergenic |
| TTTGAACAACGTGAAATCAG+TGG | 0.683617 | 5_4:+16686260 | None:intergenic |
| AGTGGCGCCTGCAAACTCAG+AGG | 0.694459 | 5_4:-16684646 | Msa0840850:CDS |
| CTGCCAGTAATGAAGGAAGG+GGG | 0.698973 | 5_4:-16683063 | Msa0840850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAAATAATAAATTTGTT+CGG | - | chr5_4:16683570-16683589 | Msa0840850:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr5_4:16683684-16683703 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr5_4:16683685-16683704 | None:intergenic | 10.0% |
| !! | AACAATTGATAAACAATAAA+TGG | + | chr5_4:16682770-16682789 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAACAAAGAACA+AGG | + | chr5_4:16683275-16683294 | None:intergenic | 15.0% |
| !!! | CTTTGTTTTTTTTTTATTGT+TGG | - | chr5_4:16683279-16683298 | Msa0840850:intron | 15.0% |
| !! | AATTTAATGTGAAGTTTATA+TGG | - | chr5_4:16683438-16683457 | Msa0840850:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr5_4:16683532-16683551 | Msa0840850:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr5_4:16683608-16683627 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr5_4:16683969-16683988 | Msa0840850:intron | 15.0% |
| !! | AATTACTAACAACAATATTA+TGG | - | chr5_4:16685254-16685273 | Msa0840850:intron | 15.0% |
| !! | ATTACTAACAACAATATTAT+GGG | - | chr5_4:16685255-16685274 | Msa0840850:intron | 15.0% |
| !! | CTTTGTAATTATTATACATA+TGG | + | chr5_4:16686414-16686433 | None:intergenic | 15.0% |
| !! | CATATGTATAATAATTACAA+AGG | - | chr5_4:16686412-16686431 | Msa0840850:five_prime_UTR | 15.0% |
| !!! | AAAAACGATTTTTTTGAAGT+TGG | + | chr5_4:16683019-16683038 | None:intergenic | 20.0% |
| !!! | AAAATCGTTTTTTTTCTTTG+TGG | - | chr5_4:16683027-16683046 | Msa0840850:CDS | 20.0% |
| !!! | AAATCGTTTTTTTTCTTTGT+GGG | - | chr5_4:16683028-16683047 | Msa0840850:CDS | 20.0% |
| !!! | AATCATTTTTTTTCTTACCA+GGG | + | chr5_4:16683137-16683156 | None:intergenic | 20.0% |
| !!! | AAATCATTTTTTTTCTTACC+AGG | + | chr5_4:16683138-16683157 | None:intergenic | 20.0% |
| !!! | TTTGTAAAATGTTCTGTTTT+TGG | - | chr5_4:16683228-16683247 | Msa0840850:intron | 20.0% |
| !!! | TTTTATTGTTGGATCAAATT+TGG | - | chr5_4:16683290-16683309 | Msa0840850:intron | 20.0% |
| !! | TTTATTGTTGGATCAAATTT+GGG | - | chr5_4:16683291-16683310 | Msa0840850:intron | 20.0% |
| !!! | TTTAGAAATATAGCTCTATT+TGG | - | chr5_4:16683468-16683487 | Msa0840850:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr5_4:16683996-16684015 | None:intergenic | 20.0% |
| !! | TCAATAACAGGATAAAATAA+AGG | - | chr5_4:16684032-16684051 | Msa0840850:intron | 20.0% |
| !!! | AATAAGTTGAAAACAGTTTA+TGG | - | chr5_4:16684366-16684385 | Msa0840850:intron | 20.0% |
| !!! | TATTGTTGTTAATCAGTATA+TGG | - | chr5_4:16684830-16684849 | Msa0840850:intron | 20.0% |
| !!! | ATTGTTGTTAATCAGTATAT+GGG | - | chr5_4:16684831-16684850 | Msa0840850:intron | 20.0% |
| !! | TTGCAAATTAAGTATCATAT+GGG | + | chr5_4:16684962-16684981 | None:intergenic | 20.0% |
| !! | ATTGCAAATTAAGTATCATA+TGG | + | chr5_4:16684963-16684982 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAATAACAAAC+CGG | + | chr5_4:16685077-16685096 | None:intergenic | 20.0% |
| !!! | ATACTTCTTATATTTTCACA+TGG | + | chr5_4:16685116-16685135 | None:intergenic | 20.0% |
| !! | ACCACTAACATATAAAAAAA+AGG | + | chr5_4:16685366-16685385 | None:intergenic | 20.0% |
| !!! | TTAATTGCTAATGATTCTTT+TGG | - | chr5_4:16685867-16685886 | Msa0840850:intron | 20.0% |
| !! | ATGGTAACAATCAATTAATA+TGG | + | chr5_4:16686021-16686040 | None:intergenic | 20.0% |
| !!! | TTGTTTTTAATGTGGTATTT+TGG | - | chr5_4:16686293-16686312 | Msa0840850:five_prime_UTR | 20.0% |
| !! | ATAATTCGAATTTCTTCTTT+CGG | - | chr5_4:16686475-16686494 | Msa0840850:five_prime_UTR | 20.0% |
| !!! | ATGGATTTAATTTGATACAC+CGG | + | chr5_4:16682751-16682770 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTTTGTGGGTAT+TGG | - | chr5_4:16683034-16683053 | Msa0840850:CDS | 25.0% |
| ! | TTTATGATCTTCACAATTTG+TGG | - | chr5_4:16683197-16683216 | Msa0840850:intron | 25.0% |
| ! | ATGTGAAGTTTATATGGAAT+CGG | - | chr5_4:16683444-16683463 | Msa0840850:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr5_4:16683991-16684010 | None:intergenic | 25.0% |
| ! | AACTGTACTATTTCAATAAC+AGG | - | chr5_4:16684020-16684039 | Msa0840850:intron | 25.0% |
| ! | CTTATGAAAGAAACTTATAG+CGG | + | chr5_4:16684074-16684093 | None:intergenic | 25.0% |
| ! | GAAACAGCTTAACTTTATTA+GGG | + | chr5_4:16684297-16684316 | None:intergenic | 25.0% |
| ! | AAAACAACTTATAGCTCATA+TGG | + | chr5_4:16684319-16684338 | None:intergenic | 25.0% |
| ! | CTTAATGTAAGACGAATATA+TGG | - | chr5_4:16684719-16684738 | Msa0840850:intron | 25.0% |
| ! | ACAACAATAATACAGTTCTA+CGG | + | chr5_4:16684819-16684838 | None:intergenic | 25.0% |
| !! | AATATTGGATTTTATCTTGC+CGG | - | chr5_4:16684926-16684945 | Msa0840850:intron | 25.0% |
| ! | CAAGTATTTAATCCAGAATA+AGG | + | chr5_4:16685007-16685026 | None:intergenic | 25.0% |
| ! | TTGAAATGCACAATTCAATA+AGG | + | chr5_4:16685047-16685066 | None:intergenic | 25.0% |
| !!! | CCGGTTTGTTATTTTTTTTT+TGG | - | chr5_4:16685074-16685093 | Msa0840850:intron | 25.0% |
| !! | TTTTGTTCTGCTTCTTAAAA+TGG | - | chr5_4:16685308-16685327 | Msa0840850:intron | 25.0% |
| !!! | GCCTTTTTTTTATATGTTAG+TGG | - | chr5_4:16685362-16685381 | Msa0840850:intron | 25.0% |
| !!! | ATATGTTAGTGGTTTTTTGT+TGG | - | chr5_4:16685373-16685392 | Msa0840850:intron | 25.0% |
| !!! | TATGTTAGTGGTTTTTTGTT+GGG | - | chr5_4:16685374-16685393 | Msa0840850:intron | 25.0% |
| !!! | TTTAGCTTTTGAAGATAGAA+GGG | + | chr5_4:16685689-16685708 | None:intergenic | 25.0% |
| ! | ACTTTGCATATAAATAAGCA+TGG | - | chr5_4:16685937-16685956 | Msa0840850:intron | 25.0% |
| ! | AATCTTATTCGTCAATAATC+AGG | - | chr5_4:16686060-16686079 | Msa0840850:intron | 25.0% |
| !!! | AACTGGTATTGTTTTTAATG+TGG | - | chr5_4:16686285-16686304 | Msa0840850:five_prime_UTR | 25.0% |
| ! | GAATTTCATCAACTTATATG+TGG | - | chr5_4:16686322-16686341 | Msa0840850:five_prime_UTR | 25.0% |
| ! | ATATACATAACGCATATTCT+GGG | + | chr5_4:16686391-16686410 | None:intergenic | 25.0% |
| !! | TGGTTTTTGAGCTGAAAAAA+TGG | - | chr5_4:16683054-16683073 | Msa0840850:CDS | 30.0% |
| !! | TTTTTGAGCTGAAAAAATGG+TGG | - | chr5_4:16683057-16683076 | Msa0840850:CDS | 30.0% |
| ! | TTTTGAGCTGAAAAAATGGT+GGG | - | chr5_4:16683058-16683077 | Msa0840850:CDS | 30.0% |
| ! | TTGTTTTCTAGATTCTCTGT+TGG | - | chr5_4:16683082-16683101 | Msa0840850:CDS | 30.0% |
| TGTGAAGTTTATATGGAATC+GGG | - | chr5_4:16683445-16683464 | Msa0840850:intron | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr5_4:16683657-16683676 | Msa0840850:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr5_4:16683666-16683685 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | + | chr5_4:16683758-16683777 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr5_4:16683876-16683895 | Msa0840850:intron | 30.0% |
| ATTGTACATGCCAAACAAAA+AGG | + | chr5_4:16683889-16683908 | None:intergenic | 30.0% | |
| !! | AAAGAAACTTATAGCGGATT+CGG | + | chr5_4:16684068-16684087 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAGCTCTAC+AGG | + | chr5_4:16684101-16684120 | None:intergenic | 30.0% |
| TTATGAAAATAAGCTGAGAC+CGG | - | chr5_4:16684108-16684127 | Msa0840850:intron | 30.0% | |
| !! | GGCATATAAGTTGTTTTCAT+AGG | - | chr5_4:16684137-16684156 | Msa0840850:intron | 30.0% |
| TTATCTACTAGCATAAACAC+CGG | + | chr5_4:16684250-16684269 | None:intergenic | 30.0% | |
| GGAAACAGCTTAACTTTATT+AGG | + | chr5_4:16684298-16684317 | None:intergenic | 30.0% | |
| AAGTTAACATGTAGAGCTTA+CGG | - | chr5_4:16684342-16684361 | Msa0840850:intron | 30.0% | |
| CCTATGTTTATTTGTCTGTT+CGG | - | chr5_4:16684463-16684482 | Msa0840850:intron | 30.0% | |
| !! | TTATGTGGACGAGTTTTAAT+TGG | - | chr5_4:16684490-16684509 | Msa0840850:intron | 30.0% |
| AATTGGTCGATCATTATCAA+GGG | + | chr5_4:16684672-16684691 | None:intergenic | 30.0% | |
| ACATTAAGAATAGATGGTTC+TGG | + | chr5_4:16684707-16684726 | None:intergenic | 30.0% | |
| CGTCTTACATTAAGAATAGA+TGG | + | chr5_4:16684713-16684732 | None:intergenic | 30.0% | |
| GGCAAGATAAAATCCAATAT+TGG | + | chr5_4:16684927-16684946 | None:intergenic | 30.0% | |
| GCAATATTTGCATGCTATAA+TGG | - | chr5_4:16684978-16684997 | Msa0840850:intron | 30.0% | |
| !! | TTCAATAAGGCTTCTTGTTT+TGG | + | chr5_4:16685034-16685053 | None:intergenic | 30.0% |
| TCTAACTTATCTGATTACCA+AGG | + | chr5_4:16685155-16685174 | None:intergenic | 30.0% | |
| AACAATATTATGGGATGTTG+TGG | - | chr5_4:16685264-16685283 | Msa0840850:intron | 30.0% | |
| ACAATATTATGGGATGTTGT+GGG | - | chr5_4:16685265-16685284 | Msa0840850:intron | 30.0% | |
| !!! | ATGTTAGTGGTTTTTTGTTG+GGG | - | chr5_4:16685375-16685394 | Msa0840850:intron | 30.0% |
| AATAAAACACGACTCTGTTA+TGG | - | chr5_4:16685517-16685536 | Msa0840850:intron | 30.0% | |
| !!! | CTTTAGCTTTTGAAGATAGA+AGG | + | chr5_4:16685690-16685709 | None:intergenic | 30.0% |
| ATCTTCAAAAGCTAAAGCAA+CGG | - | chr5_4:16685693-16685712 | Msa0840850:intron | 30.0% | |
| GAAAAGCTTATTATTGCACT+TGG | - | chr5_4:16685904-16685923 | Msa0840850:intron | 30.0% | |
| TTGCATATAAATAAGCATGG+TGG | - | chr5_4:16685940-16685959 | Msa0840850:intron | 30.0% | |
| TTTAACCACTGTGCTTAAAT+TGG | + | chr5_4:16685975-16685994 | None:intergenic | 30.0% | |
| !!! | TTGTTACCATTTAGCTTTTG+TGG | - | chr5_4:16686031-16686050 | Msa0840850:intron | 30.0% |
| TTATTCGTCAATAATCAGGA+TGG | - | chr5_4:16686064-16686083 | Msa0840850:intron | 30.0% | |
| ATAATCAGGATGGAAGAATA+TGG | - | chr5_4:16686074-16686093 | Msa0840850:intron | 30.0% | |
| !!! | AGTTTTAGAAGATTATGCTC+AGG | + | chr5_4:16686244-16686263 | None:intergenic | 30.0% |
| CTAAAACTTCTTGAAGAATC+AGG | - | chr5_4:16686256-16686275 | Msa0840850:five_prime_UTR | 30.0% | |
| TATACATAACGCATATTCTG+GGG | + | chr5_4:16686390-16686409 | None:intergenic | 30.0% | |
| GATATACATAACGCATATTC+TGG | + | chr5_4:16686392-16686411 | None:intergenic | 30.0% | |
| TGTAGAAAACTTTACACTGC+CGG | - | chr5_4:16682729-16682748 | Msa0840850:three_prime_UTR | 35.0% | |
| AAATCAGTGGTTGCATGAAA+CGG | + | chr5_4:16682929-16682948 | None:intergenic | 35.0% | |
| TTTGAACAACGTGAAATCAG+TGG | + | chr5_4:16682942-16682961 | None:intergenic | 35.0% | |
| !! | GGTGTGATTTTCTAGTCAAA+GGG | + | chr5_4:16682998-16683017 | None:intergenic | 35.0% |
| !! | TGGTGTGATTTTCTAGTCAA+AGG | + | chr5_4:16682999-16683018 | None:intergenic | 35.0% |
| ACCAAATCACATCATCACAA+GGG | + | chr5_4:16683406-16683425 | None:intergenic | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr5_4:16683598-16683617 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | + | chr5_4:16683667-16683686 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr5_4:16683802-16683821 | None:intergenic | 35.0% | |
| CAACTTATATGCCCATAAAC+CGG | + | chr5_4:16684130-16684149 | None:intergenic | 35.0% | |
| CCGAACAGACAAATAAACAT+AGG | + | chr5_4:16684466-16684485 | None:intergenic | 35.0% | |
| AACTTCTCATGGAATTGAAG+TGG | - | chr5_4:16684610-16684629 | Msa0840850:CDS | 35.0% | |
| ATCATTATCAAGGGGTTCAA+CGG | + | chr5_4:16684663-16684682 | None:intergenic | 35.0% | |
| ATTGGTCGATCATTATCAAG+GGG | + | chr5_4:16684671-16684690 | None:intergenic | 35.0% | |
| GAATTGGTCGATCATTATCA+AGG | + | chr5_4:16684673-16684692 | None:intergenic | 35.0% | |
| CTTTCATCTGTGTCCAATAT+TGG | - | chr5_4:16684911-16684930 | Msa0840850:intron | 35.0% | |
| TCATATGGGTTTGAAAACAC+CGG | + | chr5_4:16684948-16684967 | None:intergenic | 35.0% | |
| CTATAATGGTCACCTTATTC+TGG | - | chr5_4:16684992-16685011 | Msa0840850:intron | 35.0% | |
| !! | ATAAGTTAGAGTGTCGAGAA+GGG | - | chr5_4:16685165-16685184 | Msa0840850:intron | 35.0% |
| ! | ATTGCTCTAAGTAGTCTTGA+TGG | + | chr5_4:16685206-16685225 | None:intergenic | 35.0% |
| GTCTATCCTTTGATACAAGT+AGG | - | chr5_4:16685541-16685560 | Msa0840850:intron | 35.0% | |
| TTTGATACAAGTAGGTAGCT+CGG | - | chr5_4:16685549-16685568 | Msa0840850:intron | 35.0% | |
| ! | CAGGGTTTAAAATTAAACCC+TGG | + | chr5_4:16685616-16685635 | None:intergenic | 35.0% |
| ! | AGTGGTTATCTCAGTTTTCA+GGG | + | chr5_4:16685634-16685653 | None:intergenic | 35.0% |
| ! | TAGTGGTTATCTCAGTTTTC+AGG | + | chr5_4:16685635-16685654 | None:intergenic | 35.0% |
| AGTCAATGACTAACAAGTAG+TGG | + | chr5_4:16685652-16685671 | None:intergenic | 35.0% | |
| TCTTCAAAAGCTAAAGCAAC+GGG | - | chr5_4:16685694-16685713 | Msa0840850:intron | 35.0% | |
| AATAATAGTAGATGCCTACC+TGG | - | chr5_4:16685746-16685765 | Msa0840850:intron | 35.0% | |
| GCAAAAATACTAATCCAGGT+AGG | + | chr5_4:16685763-16685782 | None:intergenic | 35.0% | |
| TGGAGCAAAAATACTAATCC+AGG | + | chr5_4:16685767-16685786 | None:intergenic | 35.0% | |
| GGAAGACAAGACAAAAGTAA+TGG | + | chr5_4:16685787-16685806 | None:intergenic | 35.0% | |
| ATGGTTCACTGTGCTTAAAT+TGG | + | chr5_4:16686002-16686021 | None:intergenic | 35.0% | |
| TCAGAACCACAAAAGCTAAA+TGG | + | chr5_4:16686040-16686059 | None:intergenic | 35.0% | |
| !!! | CGTGCAAAGAGTTTTGAAGT+TGG | + | chr5_4:16682709-16682728 | None:intergenic | 40.0% |
| AGATGAGAGAGAAAGAGTTG+AGG | + | chr5_4:16682874-16682893 | None:intergenic | 40.0% | |
| AATCAGTGGTTGCATGAAAC+GGG | + | chr5_4:16682928-16682947 | None:intergenic | 40.0% | |
| ! | TCCCTTGTGATGATGTGATT+TGG | - | chr5_4:16683402-16683421 | Msa0840850:intron | 40.0% |
| CACCAAATCACATCATCACA+AGG | + | chr5_4:16683407-16683426 | None:intergenic | 40.0% | |
| !! | GTGATGATGTGATTTGGTGT+TGG | - | chr5_4:16683408-16683427 | Msa0840850:intron | 40.0% |
| !! | GATGTGATTTGGTGTTGGAT+TGG | - | chr5_4:16683413-16683432 | Msa0840850:intron | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr5_4:16683597-16683616 | None:intergenic | 40.0% |
| CTAATTTACGTTGAGTCCCA+AGG | - | chr5_4:16683824-16683843 | Msa0840850:intron | 40.0% | |
| ! | AATAAGCTGAGACCGGTTTA+TGG | - | chr5_4:16684115-16684134 | Msa0840850:intron | 40.0% |
| ! | ATAAGCTGAGACCGGTTTAT+GGG | - | chr5_4:16684116-16684135 | Msa0840850:intron | 40.0% |
| ! | ATCATCTGTTTCTCCCAGAT+AGG | - | chr5_4:16684396-16684415 | Msa0840850:intron | 40.0% |
| ! | TCATCTGTTTCTCCCAGATA+GGG | - | chr5_4:16684397-16684416 | Msa0840850:intron | 40.0% |
| ! | AAAGCACTTGTACCCTATCT+GGG | + | chr5_4:16684412-16684431 | None:intergenic | 40.0% |
| !! | AAAAGCACTTGTACCCTATC+TGG | + | chr5_4:16684413-16684432 | None:intergenic | 40.0% |
| !! | GTGTTGACTTCATATTGTGC+AGG | - | chr5_4:16684520-16684539 | Msa0840850:CDS | 40.0% |
| TTCATATTGTGCAGGATGAG+AGG | - | chr5_4:16684528-16684547 | Msa0840850:CDS | 40.0% | |
| TCATATTGTGCAGGATGAGA+GGG | - | chr5_4:16684529-16684548 | Msa0840850:CDS | 40.0% | |
| TCATTATCAAGGGGTTCAAC+GGG | + | chr5_4:16684662-16684681 | None:intergenic | 40.0% | |
| !! | AGAATAGATGGTTCTGGCAA+CGG | + | chr5_4:16684701-16684720 | None:intergenic | 40.0% |
| ! | GACAAAAAGTGTGTCAAGTC+TGG | - | chr5_4:16684855-16684874 | Msa0840850:intron | 40.0% |
| ! | TCAAGTCTGGTTGTGTTGTT+GGG | - | chr5_4:16684868-16684887 | Msa0840850:intron | 40.0% |
| TGTGCATTTCAAAAGCTTGC+CGG | - | chr5_4:16685055-16685074 | Msa0840850:intron | 40.0% | |
| ! | TGATATGCTGTTTAGTGCCT+TGG | - | chr5_4:16685135-16685154 | Msa0840850:intron | 40.0% |
| !! | GATAAGTTAGAGTGTCGAGA+AGG | - | chr5_4:16685164-16685183 | Msa0840850:intron | 40.0% |
| !!! | TTAGTGGTTTTTTGTTGGGG+AGG | - | chr5_4:16685378-16685397 | Msa0840850:intron | 40.0% |
| !!! | TAGTGGTTTTTTGTTGGGGA+GGG | - | chr5_4:16685379-16685398 | Msa0840850:intron | 40.0% |
| GAGCTACCTACTTGTATCAA+AGG | + | chr5_4:16685550-16685569 | None:intergenic | 40.0% | |
| GTAGCTCGGTTAGTGATTAA+GGG | - | chr5_4:16685563-16685582 | Msa0840850:intron | 40.0% | |
| TAGTGATTAAGGGACACCAA+AGG | - | chr5_4:16685573-16685592 | Msa0840850:intron | 40.0% | |
| CCTTCTGCTTAAAACTCCTT+TGG | + | chr5_4:16685592-16685611 | None:intergenic | 40.0% | |
| !!! | CCAAAGGAGTTTTAAGCAGA+AGG | - | chr5_4:16685589-16685608 | Msa0840850:intron | 40.0% |
| !!! | AGTTTTAAGCAGAAGGTCCA+GGG | - | chr5_4:16685596-16685615 | Msa0840850:intron | 40.0% |
| AAAAGCTAAAGCAACGGGTA+GGG | - | chr5_4:16685699-16685718 | Msa0840850:intron | 40.0% | |
| ACACACCAATTTAAGCACAG+TGG | - | chr5_4:16685967-16685986 | Msa0840850:intron | 40.0% | |
| ATCTGCCAGTAATGAAGGAA+GGG | - | chr5_4:16686134-16686153 | Msa0840850:exon | 40.0% | |
| GAAGAATCAGGCATCTAAAC+TGG | - | chr5_4:16686268-16686287 | Msa0840850:five_prime_UTR | 40.0% | |
| TACTTGGCGTGTAGGATGAT+GGG | + | chr5_4:16682839-16682858 | None:intergenic | 45.0% | |
| TTACTTGGCGTGTAGGATGA+TGG | + | chr5_4:16682840-16682859 | None:intergenic | 45.0% | |
| GAATCGTTTACTTGGCGTGT+AGG | + | chr5_4:16682847-16682866 | None:intergenic | 45.0% | |
| GAGGAGAGGAATCGTTTACT+TGG | + | chr5_4:16682855-16682874 | None:intergenic | 45.0% | |
| AGAGAGAAAGAGTTGAGGAG+AGG | + | chr5_4:16682869-16682888 | None:intergenic | 45.0% | |
| GTTTCAAGCTGAACTTGACC+CGG | - | chr5_4:16682895-16682914 | Msa0840850:three_prime_UTR | 45.0% | |
| ! | AAATTTGTTCGGTCCCGACT+TGG | - | chr5_4:16683581-16683600 | Msa0840850:intron | 45.0% |
| ! | AATTTGTTCGGTCCCGACTT+GGG | - | chr5_4:16683582-16683601 | Msa0840850:intron | 45.0% |
| ATTACGTTGCAGCGAACCTT+GGG | + | chr5_4:16683843-16683862 | None:intergenic | 45.0% | |
| AATTACGTTGCAGCGAACCT+TGG | + | chr5_4:16683844-16683863 | None:intergenic | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | - | chr5_4:16683849-16683868 | Msa0840850:intron | 45.0% | |
| AGGCTATCTTGCAGAGCTTA+TGG | - | chr5_4:16684157-16684176 | Msa0840850:intron | 45.0% | |
| ! | GCTTTTCCAAACAGTCTCAC+CGG | - | chr5_4:16684228-16684247 | Msa0840850:intron | 45.0% |
| TAAACACCGGTGAGACTGTT+TGG | + | chr5_4:16684237-16684256 | None:intergenic | 45.0% | |
| TGTCTGTTCGGCAAGTTATG+TGG | - | chr5_4:16684475-16684494 | Msa0840850:intron | 45.0% | |
| !! | GAATAGATGGTTCTGGCAAC+GGG | + | chr5_4:16684700-16684719 | None:intergenic | 45.0% |
| GTCAAGTCTGGTTGTGTTGT+TGG | - | chr5_4:16684867-16684886 | Msa0840850:intron | 45.0% | |
| !!! | AGTGGTTTTTTGTTGGGGAG+GGG | - | chr5_4:16685380-16685399 | Msa0840850:intron | 45.0% |
| AGGGGGAAATTGTTAGCAAG+AGG | - | chr5_4:16685398-16685417 | Msa0840850:intron | 45.0% | |
| GGGGGAAATTGTTAGCAAGA+GGG | - | chr5_4:16685399-16685418 | Msa0840850:intron | 45.0% | |
| GGTATCAAGAAGGAGGTCAA+AGG | + | chr5_4:16685431-16685450 | None:intergenic | 45.0% | |
| GGTAGCTCGGTTAGTGATTA+AGG | - | chr5_4:16685562-16685581 | Msa0840850:intron | 45.0% | |
| !!! | GAGTTTTAAGCAGAAGGTCC+AGG | - | chr5_4:16685595-16685614 | Msa0840850:intron | 45.0% |
| CAAAAGCTAAAGCAACGGGT+AGG | - | chr5_4:16685698-16685717 | Msa0840850:intron | 45.0% | |
| CTTGTCTTCCCTACTTCTGT+TGG | - | chr5_4:16685797-16685816 | Msa0840850:intron | 45.0% | |
| TGACTGTGCCAACAGAAGTA+GGG | + | chr5_4:16685808-16685827 | None:intergenic | 45.0% | |
| GATCTGCCAGTAATGAAGGA+AGG | - | chr5_4:16686133-16686152 | Msa0840850:exon | 45.0% | |
| TCTGCCAGTAATGAAGGAAG+GGG | - | chr5_4:16686135-16686154 | Msa0840850:exon | 45.0% | |
| CGATTAGAGTGAGATCTTCG+CGG | + | chr5_4:16686196-16686215 | None:intergenic | 45.0% | |
| !!! | ATAATAAGATAATAATTTTT+TGG | - | chr5_4:16683635-16683654 | Msa0840850:intron | 5.0% |
| !!! | TAATAAGATAATAATTTTTT+GGG | - | chr5_4:16683636-16683655 | Msa0840850:intron | 5.0% |
| ! | CATGAAACGGGTTCTGATCC+GGG | + | chr5_4:16682916-16682935 | None:intergenic | 50.0% |
| ! | GCATGAAACGGGTTCTGATC+CGG | + | chr5_4:16682917-16682936 | None:intergenic | 50.0% |
| GCTGCTACTGCAACTTCTCA+TGG | - | chr5_4:16684599-16684618 | Msa0840850:CDS | 50.0% | |
| GGTTCAACGGGATGTTCAAC+TGG | + | chr5_4:16684650-16684669 | None:intergenic | 50.0% | |
| !!! | GTGGTTTTTTGTTGGGGAGG+GGG | - | chr5_4:16685381-16685400 | Msa0840850:intron | 50.0% |
| !! | CTGAAGGGGTATCAAGAAGG+AGG | + | chr5_4:16685438-16685457 | None:intergenic | 50.0% |
| !! | ACGCTGAAGGGGTATCAAGA+AGG | + | chr5_4:16685441-16685460 | None:intergenic | 50.0% |
| TCCTGAGGGCTACATCTTTG+AGG | - | chr5_4:16685460-16685479 | Msa0840850:intron | 50.0% | |
| CCTGAGGGCTACATCTTTGA+GGG | - | chr5_4:16685461-16685480 | Msa0840850:intron | 50.0% | |
| GTGACTGTGCCAACAGAAGT+AGG | + | chr5_4:16685809-16685828 | None:intergenic | 50.0% | |
| AGGCGATCTGCCAGTAATGA+AGG | - | chr5_4:16686129-16686148 | Msa0840850:CDS | 50.0% | |
| CTGCCAGTAATGAAGGAAGG+GGG | - | chr5_4:16686136-16686155 | Msa0840850:exon | 50.0% | |
| !! | CAGGAGCACTAAGAGATGGT+AGG | + | chr5_4:16686225-16686244 | None:intergenic | 50.0% |
| !! | TGCTCAGGAGCACTAAGAGA+TGG | + | chr5_4:16686229-16686248 | None:intergenic | 50.0% |
| !! | GGCGTGTAGGATGATGGGTT+TGG | + | chr5_4:16682834-16682853 | None:intergenic | 55.0% |
| GGGCACTTTGTGTTCGTCGA+TGG | + | chr5_4:16683117-16683136 | None:intergenic | 55.0% | |
| ! | TCGACGAACACAAAGTGCCC+TGG | - | chr5_4:16683117-16683136 | Msa0840850:CDS | 55.0% |
| TGTGCAGGATGAGAGGGAAG+TGG | - | chr5_4:16684535-16684554 | Msa0840850:CDS | 55.0% | |
| !! | TCTGGCAACGGGCACTGAAT+TGG | + | chr5_4:16684689-16684708 | None:intergenic | 55.0% |
| ATACCCCTTCAGCGTCCTGA+GGG | - | chr5_4:16685446-16685465 | Msa0840850:intron | 55.0% | |
| CCCTCAAAGATGTAGCCCTC+AGG | + | chr5_4:16685464-16685483 | None:intergenic | 55.0% | |
| GCTAAAGCAACGGGTAGGGT+TGG | - | chr5_4:16685703-16685722 | Msa0840850:intron | 55.0% | |
| TCTGCTACCGTGCGTAGAAG+AGG | - | chr5_4:16686109-16686128 | Msa0840850:CDS | 55.0% | |
| CAGATCGCCTCTTCTACGCA+CGG | + | chr5_4:16686119-16686138 | None:intergenic | 55.0% | |
| CCTCCCCCTTCCTTCATTAC+TGG | + | chr5_4:16686142-16686161 | None:intergenic | 55.0% | |
| CCAGTAATGAAGGAAGGGGG+AGG | - | chr5_4:16686139-16686158 | Msa0840850:exon | 55.0% | |
| !! | GGAGGAGCACTTGAGTCTGA+AGG | - | chr5_4:16686157-16686176 | Msa0840850:five_prime_UTR | 55.0% |
| AGTCTGAAGGTCCTGCTCCT+CGG | - | chr5_4:16686170-16686189 | Msa0840850:five_prime_UTR | 55.0% | |
| AGTGGCGCCTGCAAACTCAG+AGG | - | chr5_4:16684553-16684572 | Msa0840850:CDS | 60.0% | |
| GCTGCCACCTCTGAGTTTGC+AGG | + | chr5_4:16684563-16684582 | None:intergenic | 60.0% | |
| GATACCCCTTCAGCGTCCTG+AGG | - | chr5_4:16685445-16685464 | Msa0840850:intron | 60.0% | |
| TAGCCCTCAGGACGCTGAAG+GGG | + | chr5_4:16685452-16685471 | None:intergenic | 60.0% | |
| GTAGCCCTCAGGACGCTGAA+GGG | + | chr5_4:16685453-16685472 | None:intergenic | 60.0% | |
| TGTAGCCCTCAGGACGCTGA+AGG | + | chr5_4:16685454-16685473 | None:intergenic | 60.0% | |
| GCAACGGGTAGGGTTGGAAG+TGG | - | chr5_4:16685709-16685728 | Msa0840850:intron | 60.0% | |
| GGCGCCTGCAAACTCAGAGG+TGG | - | chr5_4:16684556-16684575 | Msa0840850:CDS | 65.0% | |
| GAGTGAGATCTTCGCGGCCG+AGG | + | chr5_4:16686190-16686209 | None:intergenic | 65.0% | |
| GATCTTCGCGGCCGAGGAGC+AGG | + | chr5_4:16686184-16686203 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 16682706 | 16686515 | 16682706 | ID=Msa0840850;Name=Msa0840850 |
| chr5_4 | mRNA | 16682706 | 16686515 | 16682706 | ID=Msa0840850-mRNA-1;Parent=Msa0840850;Name=Msa0840850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=367|1|1|1|1|1|3|230|150 |
| chr5_4 | exon | 16682706 | 16683139 | 16682706 | ID=Msa0840850-mRNA-1:exon:7175;Parent=Msa0840850-mRNA-1 |
| chr5_4 | exon | 16684497 | 16684679 | 16684497 | ID=Msa0840850-mRNA-1:exon:7174;Parent=Msa0840850-mRNA-1 |
| chr5_4 | exon | 16686083 | 16686515 | 16686083 | ID=Msa0840850-mRNA-1:exon:7173;Parent=Msa0840850-mRNA-1 |
| chr5_4 | five_prime_UTR | 16686149 | 16686515 | 16686149 | ID=Msa0840850-mRNA-1:five_prime_utr;Parent=Msa0840850-mRNA-1 |
| chr5_4 | CDS | 16686083 | 16686148 | 16686083 | ID=Msa0840850-mRNA-1:cds;Parent=Msa0840850-mRNA-1 |
| chr5_4 | CDS | 16684497 | 16684679 | 16684497 | ID=Msa0840850-mRNA-1:cds;Parent=Msa0840850-mRNA-1 |
| chr5_4 | CDS | 16682936 | 16683139 | 16682936 | ID=Msa0840850-mRNA-1:cds;Parent=Msa0840850-mRNA-1 |
| chr5_4 | three_prime_UTR | 16682706 | 16682935 | 16682706 | ID=Msa0840850-mRNA-1:three_prime_utr;Parent=Msa0840850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
