Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287000 | XP_013464630.1 | 81.290 | 465 | 25 | 7 | 321 | 743 | 265 | 709 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287000 | A0A072VKI2 | 81.290 | 465 | 25 | 7 | 321 | 743 | 265 | 709 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001780 | Msa0287000 | 0.804575 | 2.022541e-49 | -8.615850e-47 |
| Msa0017510 | Msa0287000 | 0.830342 | 3.099480e-55 | -8.615850e-47 |
| Msa0028640 | Msa0287000 | 0.800762 | 1.237955e-48 | -8.615850e-47 |
| Msa0064560 | Msa0287000 | 0.804176 | 2.449550e-49 | -8.615850e-47 |
| Msa0110970 | Msa0287000 | 0.817744 | 2.813532e-52 | -8.615850e-47 |
| Msa0140780 | Msa0287000 | 0.808345 | 3.241632e-50 | -8.615850e-47 |
| Msa0157290 | Msa0287000 | 0.830265 | 3.236140e-55 | -8.615850e-47 |
| Msa0200260 | Msa0287000 | 0.820524 | 6.554408e-53 | -8.615850e-47 |
| Msa0215830 | Msa0287000 | 0.817190 | 3.750645e-52 | -8.615850e-47 |
| Msa0220740 | Msa0287000 | 0.804549 | 2.047979e-49 | -8.615850e-47 |
| Msa0222920 | Msa0287000 | 0.810660 | 1.032372e-50 | -8.615850e-47 |
| Msa0234600 | Msa0287000 | 0.800044 | 1.733744e-48 | -8.615850e-47 |
| Msa0243100 | Msa0287000 | 0.815361 | 9.617388e-52 | -8.615850e-47 |
| Msa0244860 | Msa0287000 | 0.812716 | 3.686006e-51 | -8.615850e-47 |
| Msa0258760 | Msa0287000 | 0.817099 | 3.930407e-52 | -8.615850e-47 |
| Msa0264350 | Msa0287000 | 0.801818 | 7.524268e-49 | -8.615850e-47 |
| Msa0283450 | Msa0287000 | 0.815099 | 1.099429e-51 | -8.615850e-47 |
| Msa0283520 | Msa0287000 | 0.807492 | 4.923577e-50 | -8.615850e-47 |
| Msa0287000 | Msa0287650 | 0.819422 | 1.171498e-52 | -8.615850e-47 |
| Msa0287000 | Msa0291540 | 0.805098 | 1.572636e-49 | -8.615850e-47 |
| Msa0287000 | Msa0323080 | 0.801758 | 7.741248e-49 | -8.615850e-47 |
| Msa0287000 | Msa0332000 | 0.803483 | 3.411761e-49 | -8.615850e-47 |
| Msa0287000 | Msa0349080 | 0.817139 | 3.850083e-52 | -8.615850e-47 |
| Msa0287000 | Msa0366240 | 0.807205 | 5.662408e-50 | -8.615850e-47 |
| Msa0287000 | Msa0410650 | 0.800054 | 1.725587e-48 | -8.615850e-47 |
| Msa0287000 | Msa0423360 | -0.801559 | 8.505408e-49 | -8.615850e-47 |
| Msa0287000 | Msa0459770 | -0.801716 | 7.895948e-49 | -8.615850e-47 |
| Msa0287000 | Msa0480980 | 0.830002 | 3.751889e-55 | -8.615850e-47 |
| Msa0287000 | Msa0491040 | 0.806830 | 6.798340e-50 | -8.615850e-47 |
| Msa0287000 | Msa0507680 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
| Msa0287000 | Msa0533070 | 0.812388 | 4.346891e-51 | -8.615850e-47 |
| Msa0287000 | Msa0540870 | 0.809870 | 1.527869e-50 | -8.615850e-47 |
| Msa0287000 | Msa0548280 | -0.822605 | 2.165698e-53 | -8.615850e-47 |
| Msa0287000 | Msa0566030 | 0.820008 | 8.603468e-53 | -8.615850e-47 |
| Msa0287000 | Msa0581760 | 0.823567 | 1.292250e-53 | -8.615850e-47 |
| Msa0287000 | Msa0677400 | 0.801552 | 8.532177e-49 | -8.615850e-47 |
| Msa0287000 | Msa0692230 | 0.817397 | 3.368424e-52 | -8.615850e-47 |
| Msa0287000 | Msa0756630 | -0.810658 | 1.033020e-50 | -8.615850e-47 |
| Msa0287000 | Msa0787260 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0287000 | Msa0844240 | 0.820045 | 8.441428e-53 | -8.615850e-47 |
| Msa0287000 | Msa0880140 | 0.827369 | 1.625303e-54 | -8.615850e-47 |
| Msa0287000 | Msa0891040 | 0.800155 | 1.645833e-48 | -8.615850e-47 |
| Msa0287000 | Msa0930780 | 0.805882 | 1.076833e-49 | -8.615850e-47 |
| Msa0287000 | Msa0981010 | 0.817759 | 2.791850e-52 | -8.615850e-47 |
| Msa0287000 | Msa1040120 | 0.835715 | 1.427786e-56 | -8.615850e-47 |
| Msa0287000 | Msa1075220 | -0.805890 | 1.072902e-49 | -8.615850e-47 |
| Msa0287000 | Msa1128160 | 0.819692 | 1.016102e-52 | -8.615850e-47 |
| Msa0287000 | Msa1165360 | 0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa0287000 | Msa1222970 | 0.830454 | 2.910349e-55 | -8.615850e-47 |
| Msa0287000 | Msa1228210 | 0.815081 | 1.109826e-51 | -8.615850e-47 |
| Msa0287000 | Msa1242230 | 0.825177 | 5.404277e-54 | -8.615850e-47 |
| Msa0287000 | Msa1242240 | 0.828806 | 7.326504e-55 | -8.615850e-47 |
| Msa0287000 | Msa1261250 | 0.812471 | 4.169055e-51 | -8.615850e-47 |
| Msa0287000 | Msa1264020 | 0.817918 | 2.569464e-52 | -8.615850e-47 |
| Msa0287000 | Msa1267220 | 0.807616 | 4.634592e-50 | -8.615850e-47 |
| Msa0287000 | Msa1271280 | 0.823927 | 1.064239e-53 | -8.615850e-47 |
| Msa0287000 | Msa1271300 | 0.811590 | 6.488014e-51 | -8.615850e-47 |
| Msa0287000 | Msa1283840 | 0.820078 | 8.293879e-53 | -8.615850e-47 |
| Msa0287000 | Msa1283860 | 0.802689 | 4.980158e-49 | -8.615850e-47 |
| Msa0287000 | Msa1284260 | 0.835124 | 2.013562e-56 | -8.615850e-47 |
| Msa0287000 | Msa1322860 | 0.827484 | 1.525235e-54 | -8.615850e-47 |
| Msa0287000 | Msa1327050 | 0.827518 | 1.496418e-54 | -8.615850e-47 |
| Msa0287000 | Msa1367080 | 0.845336 | 4.326742e-59 | -8.615850e-47 |
| Msa0287000 | Msa1374550 | 0.804259 | 2.354160e-49 | -8.615850e-47 |
| Msa0287000 | Msa1378760 | 0.811854 | 5.684155e-51 | -8.615850e-47 |
| Msa0287000 | Msa1384350 | 0.814899 | 1.217961e-51 | -8.615850e-47 |
| Msa0287000 | Msa1392260 | 0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0287000 | Msa1409870 | 0.813322 | 2.713977e-51 | -8.615850e-47 |
| Msa0287000 | Msa1429150 | 0.801570 | 8.460016e-49 | -8.615850e-47 |
| Msa0287000 | Msa1429900 | 0.802617 | 5.153951e-49 | -8.615850e-47 |
| Msa0287000 | Msa1445100 | 0.800159 | 1.642199e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287000 | MtrunA17_Chr2g0316841 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 654 |
| Msa0287000 | MtrunA17_Chr2g0316741 | 81.075 | 465 | 26 | 7 | 321 | 743 | 265 | 709 | 0.0 | 651 |
| Msa0287000 | MtrunA17_Chr2g0319971 | 40.625 | 128 | 64 | 5 | 225 | 345 | 134 | 256 | 6.00e-18 | 84.3 |
| Msa0287000 | MtrunA17_Chr2g0284311 | 39.053 | 169 | 83 | 5 | 167 | 320 | 66 | 229 | 3.38e-17 | 81.6 |
| Msa0287000 | MtrunA17_Chr8g0379321 | 39.669 | 121 | 54 | 4 | 216 | 320 | 123 | 240 | 1.06e-15 | 77.4 |
| Msa0287000 | MtrunA17_Chr4g0041451 | 40.367 | 109 | 47 | 3 | 229 | 319 | 128 | 236 | 1.75e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287000 | AT3G15115.1 | 30.259 | 347 | 172 | 15 | 18 | 319 | 12 | 333 | 8.36e-19 | 89.0 |
| Msa0287000 | AT3G15095.1 | 60.317 | 63 | 20 | 1 | 332 | 394 | 267 | 324 | 2.91e-14 | 77.0 |
| Msa0287000 | AT3G15095.2 | 60.317 | 63 | 20 | 1 | 332 | 394 | 135 | 192 | 4.38e-14 | 76.3 |
| Msa0287000 | AT3G15095.3 | 80.000 | 40 | 8 | 0 | 355 | 394 | 7 | 46 | 1.85e-11 | 67.4 |
Find 150 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCGGAGGCTTCTTGTTTC+TGG | -0.002846 | 2_3:+29008966 | Msa0287000:CDS |
| TGATGGGTTTCTTCTGTTTC+TGG | 0.052532 | 2_3:-29008320 | None:intergenic |
| GACATCTTATTTCCCCAATT+TGG | 0.135591 | 2_3:-29007184 | None:intergenic |
| GAAGAAGCTATGAAAGTTTC+AGG | 0.141713 | 2_3:-29008404 | None:intergenic |
| TCTTCTTCTTTCACTCTAAT+TGG | 0.176697 | 2_3:-29005874 | None:intergenic |
| CAACTCCTCCTGTTCCAAAT+TGG | 0.187842 | 2_3:+29007170 | Msa0287000:CDS |
| CTTAAACAAAGAGGGTATTT+TGG | 0.192411 | 2_3:+29006913 | Msa0287000:CDS |
| TGGAGGCAAGTTGTCATTAT+TGG | 0.201109 | 2_3:-29006136 | None:intergenic |
| TTTCTTCATCTTCTACTTGA+TGG | 0.218943 | 2_3:-29008337 | None:intergenic |
| AGTTCAAGGGTTCAAGGATT+TGG | 0.219405 | 2_3:+29007003 | Msa0287000:CDS |
| GTATGTATTCTGAATTTATA+TGG | 0.253315 | 2_3:-29005550 | None:intergenic |
| GAGGATGCGGTTCAAGTTTC+CGG | 0.253854 | 2_3:-29008994 | None:intergenic |
| GGTGCTCTTTGCAGCTTCTT+AGG | 0.254314 | 2_3:-29005841 | None:intergenic |
| GAATGACACCTTAACATCTT+TGG | 0.264564 | 2_3:-29005730 | None:intergenic |
| CAAGAAACTGATTCAAGAAT+TGG | 0.268407 | 2_3:+29006084 | Msa0287000:CDS |
| TAGCTACTTCATCAACTTCT+TGG | 0.268448 | 2_3:-29008175 | None:intergenic |
| GATGTTCTTCTACTTCAATT+TGG | 0.288027 | 2_3:-29007902 | None:intergenic |
| AACTCCTCCTGTTCCAAATT+GGG | 0.290556 | 2_3:+29007171 | Msa0287000:CDS |
| TAGATCTGATCCTGTTAAAA+TGG | 0.314155 | 2_3:+29007830 | Msa0287000:CDS |
| GTTCAAGGGTTCAAGGATTT+GGG | 0.318307 | 2_3:+29007004 | Msa0287000:CDS |
| GGAGGCAAGTTGTCATTATT+GGG | 0.324183 | 2_3:-29006135 | None:intergenic |
| ATTAACAAAAGAGCATTCTT+TGG | 0.324561 | 2_3:-29007801 | None:intergenic |
| ACCCGCCGGAGTGGAGAAAA+AGG | 0.330526 | 2_3:+29008709 | Msa0287000:CDS |
| CAAGAGCTATTATTATCATT+TGG | 0.336403 | 2_3:-29005619 | None:intergenic |
| GAAACTTCCATTGAAAGCTT+TGG | 0.338002 | 2_3:-29008623 | None:intergenic |
| ACTCTAATTGGTGGCATAGA+TGG | 0.345119 | 2_3:-29005862 | None:intergenic |
| CCATCTTTGCCTCCAACAAT+AGG | 0.347224 | 2_3:+29006045 | Msa0287000:CDS |
| TCCTGTTAAAATGGCTGCTT+TGG | 0.359824 | 2_3:+29007839 | Msa0287000:CDS |
| GTCGGAGCTCCGGCTGGTGT+TGG | 0.363415 | 2_3:+29009034 | Msa0287000:CDS |
| TGAAGATCTTGATATTGATT+TGG | 0.363834 | 2_3:+29007698 | Msa0287000:CDS |
| TTCTTCATCTTCTACTTGAT+GGG | 0.368571 | 2_3:-29008336 | None:intergenic |
| AGCTTAGCTAACATAATTCC+TGG | 0.370469 | 2_3:+29007058 | Msa0287000:CDS |
| CTTCTTGTTTCTGGAATAAC+CGG | 0.377554 | 2_3:+29008975 | Msa0287000:CDS |
| GCCTCCAAGGTTAACCTCTA+AGG | 0.388438 | 2_3:+29006152 | Msa0287000:CDS |
| TGATTTCATACGGTGGTTAC+CGG | 0.390540 | 2_3:+29008670 | Msa0287000:CDS |
| GCAGGCTTCACCTTAACTTT+CGG | 0.392026 | 2_3:-29008761 | None:intergenic |
| GAAAAGATACAAGAAGAGTT+TGG | 0.392635 | 2_3:+29007726 | Msa0287000:CDS |
| GACCGGTGCCGGAATGTCTA+TGG | 0.394618 | 2_3:+29008832 | Msa0287000:CDS |
| TCCTCTCTCCCTATTGTTGG+AGG | 0.400398 | 2_3:-29006054 | None:intergenic |
| TCGGAGCTCCGGCTGGTGTT+GGG | 0.400805 | 2_3:+29009035 | Msa0287000:CDS |
| TGGTCTTGTTCTTTGTGAAT+AGG | 0.403593 | 2_3:-29007882 | None:intergenic |
| GAGATCTTCATGTTGTTTGC+CGG | 0.404192 | 2_3:+29008808 | Msa0287000:CDS |
| GCTCCGACTCCAAGCGTTGC+CGG | 0.405038 | 2_3:-29009019 | None:intergenic |
| CATAGTGGCCATAGACATTC+CGG | 0.407449 | 2_3:-29008840 | None:intergenic |
| TGCATCAACGGCGGATGAGC+AGG | 0.411748 | 2_3:-29008779 | None:intergenic |
| TCCTAAATCAGAAAACAATA+AGG | 0.414045 | 2_3:+29006951 | Msa0287000:CDS |
| TTCAACTTTATCATCATCAA+TGG | 0.422771 | 2_3:-29008249 | None:intergenic |
| CATCCTCCTCCGGCAACGCT+TGG | 0.424124 | 2_3:+29009010 | Msa0287000:CDS |
| TTACAGCGCGTGAGAACAAA+TGG | 0.424413 | 2_3:-29008911 | None:intergenic |
| ATCTACAAAGCCGAAAGTTA+AGG | 0.426038 | 2_3:+29008751 | Msa0287000:CDS |
| TTATTTCCCCAATTTGGAAC+AGG | 0.427610 | 2_3:-29007178 | None:intergenic |
| ATATAAAACCAAAGATGTTA+AGG | 0.433545 | 2_3:+29005722 | Msa0287000:CDS |
| GTTGTTCAAAATCTCGTAAT+GGG | 0.435963 | 2_3:+29008882 | Msa0287000:CDS |
| GGAATTATGTTAGCTAAGCT+TGG | 0.440726 | 2_3:-29007055 | None:intergenic |
| AGAATACATACATACATGTA+AGG | 0.443988 | 2_3:+29005562 | Msa0287000:five_prime_UTR |
| GATGAAGATGAAAATGAAGT+TGG | 0.444224 | 2_3:+29008215 | Msa0287000:CDS |
| TCTTCTTTCACTCTAATTGG+TGG | 0.448745 | 2_3:-29005871 | None:intergenic |
| CCTATTGTTGGAGGCAAAGA+TGG | 0.449300 | 2_3:-29006045 | None:intergenic |
| CTTGAGTATGAAGAAGTTCA+AGG | 0.460785 | 2_3:+29006989 | Msa0287000:CDS |
| ATAGAAGTGATAGCAATAGA+AGG | 0.463972 | 2_3:+29006001 | Msa0287000:CDS |
| TCATGTTGTTTGCCGGTGAC+CGG | 0.470939 | 2_3:+29008815 | Msa0287000:CDS |
| TATGTATTCTGAATTTATAT+GGG | 0.471012 | 2_3:-29005549 | None:intergenic |
| CAATGAACAAAGCATCGAAA+TGG | 0.473242 | 2_3:+29008031 | Msa0287000:CDS |
| CAAGAACAAGAGGAAGATAG+TGG | 0.475452 | 2_3:+29007945 | Msa0287000:CDS |
| ATTAGTCTTGTTGAAGGGTA+AGG | 0.475567 | 2_3:-29005757 | None:intergenic |
| CATCTTTGCCTCCAACAATA+GGG | 0.480386 | 2_3:+29006046 | Msa0287000:CDS |
| TGTTCTCACGCGCTGTAAGT+CGG | 0.481920 | 2_3:+29008916 | Msa0287000:CDS |
| GACATTCCGGCACCGGTCAC+CGG | 0.482056 | 2_3:-29008827 | None:intergenic |
| ACTCCAAGCGTTGCCGGAGG+AGG | 0.482424 | 2_3:-29009013 | None:intergenic |
| ACCTTAGAGGTTAACCTTGG+AGG | 0.482914 | 2_3:-29006153 | None:intergenic |
| AGCGTTGCCGGAGGAGGATG+CGG | 0.485071 | 2_3:-29009007 | None:intergenic |
| CTTGGAGTCGGAGCTCCGGC+TGG | 0.485673 | 2_3:+29009028 | Msa0287000:CDS |
| GAGCTGATTAGTCTTGTTGA+AGG | 0.486253 | 2_3:-29005763 | None:intergenic |
| CCCTAAAACCCAACACCAGC+CGG | 0.487929 | 2_3:-29009043 | None:intergenic |
| CATCGGATTCTGCTATGCAC+TGG | 0.495201 | 2_3:+29005935 | Msa0287000:CDS |
| TGTTTGCCGGTGACCGGTGC+CGG | 0.496747 | 2_3:+29008821 | Msa0287000:CDS |
| AACAAAAGAGCATTCTTTGG+TGG | 0.497686 | 2_3:-29007798 | None:intergenic |
| GGTTGTTCAAAATCTCGTAA+TGG | 0.499945 | 2_3:+29008881 | Msa0287000:CDS |
| GGCCATAGACATTCCGGCAC+CGG | 0.500659 | 2_3:-29008834 | None:intergenic |
| GATGAAAATGAAGTTGGTAA+TGG | 0.503125 | 2_3:+29008221 | Msa0287000:CDS |
| GCTTTCAATGGAAGTTTCAA+AGG | 0.505440 | 2_3:+29008628 | Msa0287000:CDS |
| GTAGAAGAAGATGAAGAGAA+AGG | 0.509757 | 2_3:+29007756 | Msa0287000:CDS |
| GATCTCGGCGGCTGCATCAA+CGG | 0.511129 | 2_3:-29008791 | None:intergenic |
| ACTTGAACCGCATCCTCCTC+CGG | 0.514734 | 2_3:+29009000 | Msa0287000:CDS |
| GGCGACGAAGCTTGCGCCGG+AGG | 0.515216 | 2_3:+29008952 | Msa0287000:CDS |
| AAGAAGCTATGAAAGTTTCA+GGG | 0.517355 | 2_3:-29008403 | None:intergenic |
| TGAAGAAGTTCAAGGGTTCA+AGG | 0.522733 | 2_3:+29006997 | Msa0287000:CDS |
| AGTACCTTAGAGGTTAACCT+TGG | 0.525551 | 2_3:-29006156 | None:intergenic |
| GTGAGAGGAGTTATAGTCAA+AGG | 0.525983 | 2_3:+29007664 | Msa0287000:CDS |
| TGTGAAGCCAAAGCTTTCAA+TGG | 0.527931 | 2_3:+29008616 | Msa0287000:intron |
| AACGCTTGGAGTCGGAGCTC+CGG | 0.528527 | 2_3:+29009024 | Msa0287000:CDS |
| AACCATGCCTCTGATAAGTA+AGG | 0.533103 | 2_3:-29007133 | None:intergenic |
| CCTCCGGCAACGCTTGGAGT+CGG | 0.534842 | 2_3:+29009016 | Msa0287000:CDS |
| AGCTTCGTCGCCGACCTCAT+CGG | 0.538485 | 2_3:-29008941 | None:intergenic |
| TGATGAAGTAGCTAATGAAG+AGG | 0.539265 | 2_3:+29008184 | Msa0287000:CDS |
| TCATTATTGGGAGGTGTCGA+TGG | 0.539813 | 2_3:-29006123 | None:intergenic |
| TGGAAGTTTCAAAGGAAACA+TGG | 0.542217 | 2_3:+29008636 | Msa0287000:CDS |
| ATAATGACAACTTGCCTCCA+AGG | 0.544515 | 2_3:+29006139 | Msa0287000:CDS |
| TATGATTGAGCAGAAGTTGG+TGG | 0.546810 | 2_3:+29008859 | Msa0287000:CDS |
| AGATGTAGAACAAGAACAAG+AGG | 0.548389 | 2_3:+29007935 | Msa0287000:CDS |
| GAAAGTTTCAGGGGAAGAAG+AGG | 0.549912 | 2_3:-29008393 | None:intergenic |
| TGAATCTACTTGAAGAGTGT+TGG | 0.552194 | 2_3:+29005680 | Msa0287000:CDS |
| CACCGGAAAACCCGCCGGAG+TGG | 0.554008 | 2_3:+29008700 | Msa0287000:CDS |
| CAACTTCTGCTCAATCATAG+TGG | 0.555579 | 2_3:-29008855 | None:intergenic |
| TTACTTATCAGAGGCATGGT+TGG | 0.560586 | 2_3:+29007135 | Msa0287000:CDS |
| CATCATTGTGCAAAGATGAA+AGG | 0.561895 | 2_3:+29005970 | Msa0287000:CDS |
| TGTTGAACATGAACATGAAG+AGG | 0.562036 | 2_3:+29007983 | Msa0287000:CDS |
| ACTCCTCCTGTTCCAAATTG+GGG | 0.566945 | 2_3:+29007172 | Msa0287000:CDS |
| GGCAAACAACATGAAGATCT+CGG | 0.567033 | 2_3:-29008806 | None:intergenic |
| ATCGGATTCTGCTATGCACT+GGG | 0.568531 | 2_3:+29005936 | Msa0287000:CDS |
| GTCGGCGACGAAGCTTGCGC+CGG | 0.570035 | 2_3:+29008949 | Msa0287000:CDS |
| ATCAACTAAAACACATGGAA+AGG | 0.570735 | 2_3:-29008273 | None:intergenic |
| CTTCATACTCAAGATCACTT+AGG | 0.571003 | 2_3:-29006979 | None:intergenic |
| CAGCATTCCAAGAAGTAGAC+CGG | 0.572646 | 2_3:+29006868 | Msa0287000:CDS |
| GACCTTACTTATCAGAGGCA+TGG | 0.573969 | 2_3:+29007131 | Msa0287000:CDS |
| TTCCAGAAACAAGAAGCCTC+CGG | 0.575555 | 2_3:-29008968 | None:intergenic |
| CACTATGATTGAGCAGAAGT+TGG | 0.575931 | 2_3:+29008856 | Msa0287000:CDS |
| GTTGAAAGCTTAAACAAAGA+GGG | 0.576048 | 2_3:+29006905 | Msa0287000:CDS |
| AGCTGATTAGTCTTGTTGAA+GGG | 0.577448 | 2_3:-29005762 | None:intergenic |
| TTTCCCCAATTTGGAACAGG+AGG | 0.577483 | 2_3:-29007175 | None:intergenic |
| GATTCTGCTATGCACTGGGC+AGG | 0.577944 | 2_3:+29005940 | Msa0287000:CDS |
| TGGTTACCGGAGAGACCCAC+CGG | 0.587320 | 2_3:+29008683 | Msa0287000:CDS |
| GCCTCCAACAATAGGGAGAG+AGG | 0.599344 | 2_3:+29006053 | Msa0287000:CDS |
| AGTTGAAAGCTTAAACAAAG+AGG | 0.608171 | 2_3:+29006904 | Msa0287000:CDS |
| TTGAGTATGAAGAAGTTCAA+GGG | 0.610506 | 2_3:+29006990 | Msa0287000:CDS |
| TATGCAGCACTGATTTCATA+CGG | 0.610683 | 2_3:+29008660 | Msa0287000:CDS |
| GGAAGTTTCAAAGGAAACAT+GGG | 0.611713 | 2_3:+29008637 | Msa0287000:CDS |
| AGACCCACCGGAAAACCCGC+CGG | 0.612268 | 2_3:+29008695 | Msa0287000:CDS |
| AAGTGAAGCACAAGCTAGTG+AGG | 0.615423 | 2_3:+29008124 | Msa0287000:CDS |
| AAGATACAAGAAGAGTTTGG+TGG | 0.616336 | 2_3:+29007729 | Msa0287000:CDS |
| GAGGAAGATAAAGCAGCAAG+AGG | 0.618815 | 2_3:+29007109 | Msa0287000:CDS |
| AAAATTGGTGCATCAAACAT+CGG | 0.619857 | 2_3:+29005918 | Msa0287000:CDS |
| TAAGTCGGAGCCGATGAGGT+CGG | 0.620166 | 2_3:+29008931 | Msa0287000:CDS |
| GAATACATACATACATGTAA+GGG | 0.624199 | 2_3:+29005563 | Msa0287000:five_prime_UTR |
| TGTAGATGAAGATGATTCCA+CGG | 0.625643 | 2_3:-29008735 | None:intergenic |
| GGCAAGTTGTCATTATTGGG+AGG | 0.626871 | 2_3:-29006132 | None:intergenic |
| AGGATGAACAAAATCACCAT+CGG | 0.638726 | 2_3:-29005821 | None:intergenic |
| GTTAGAAAAGTTGAAACACA+TGG | 0.639189 | 2_3:+29005594 | Msa0287000:exon |
| AAGAGGACCTTACTTATCAG+AGG | 0.645280 | 2_3:+29007126 | Msa0287000:CDS |
| ATGATTGAGCAGAAGTTGGT+GGG | 0.646157 | 2_3:+29008860 | Msa0287000:CDS |
| CTCGGCGGCTGCATCAACGG+CGG | 0.646549 | 2_3:-29008788 | None:intergenic |
| TGAACAAAATCACCATCGGA+TGG | 0.647374 | 2_3:-29005817 | None:intergenic |
| AGAAGCTATGAAAGTTTCAG+GGG | 0.654222 | 2_3:-29008402 | None:intergenic |
| TCAGCAAGTAAACCATCCGA+TGG | 0.664328 | 2_3:+29005805 | Msa0287000:CDS |
| GAGGAACAAGTAGAAGAACA+AGG | 0.666204 | 2_3:+29008002 | Msa0287000:CDS |
| CCGACTCCAAGCGTTGCCGG+AGG | 0.666430 | 2_3:-29009016 | None:intergenic |
| AGTGAATCAACTAAAACACA+TGG | 0.674847 | 2_3:-29008278 | None:intergenic |
| GCTGTAAGTCGGAGCCGATG+AGG | 0.689893 | 2_3:+29008927 | Msa0287000:CDS |
| GCAGCACTGATTTCATACGG+TGG | 0.747087 | 2_3:+29008663 | Msa0287000:CDS |
| AAACAACATGAAGATCTCGG+CGG | 0.798508 | 2_3:-29008803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTATTCTGAATTTATAT+GGG | - | chr2_3:29005552-29005571 | None:intergenic | 15.0% |
| !! | ACTTAAATGCTAAAATTATT+TGG | - | chr2_3:29006486-29006505 | None:intergenic | 15.0% |
| !! | GTATGTATTCTGAATTTATA+TGG | - | chr2_3:29005553-29005572 | None:intergenic | 20.0% |
| !! | ATATAAAACCAAAGATGTTA+AGG | + | chr2_3:29005722-29005741 | Msa0287000:CDS | 20.0% |
| !! | GAAGAAAAAGATGATAAAAA+AGG | + | chr2_3:29005892-29005911 | Msa0287000:CDS | 20.0% |
| !! | TGATAAAAAAGGAAGAAAAT+TGG | + | chr2_3:29005903-29005922 | Msa0287000:CDS | 20.0% |
| !! | GACATAATGATTTAAAAAGA+GGG | - | chr2_3:29006385-29006404 | None:intergenic | 20.0% |
| !! | TGACATAATGATTTAAAAAG+AGG | - | chr2_3:29006386-29006405 | None:intergenic | 20.0% |
| !! | TAATATCAATCATAAACTCT+TGG | - | chr2_3:29006412-29006431 | None:intergenic | 20.0% |
| !! | AACACCAATTAATACAAATA+TGG | + | chr2_3:29006452-29006471 | Msa0287000:intron | 20.0% |
| !! | TTAGCCATATTTGTATTAAT+TGG | - | chr2_3:29006459-29006478 | None:intergenic | 20.0% |
| !! | TTAATACAAATATGGCTAAA+AGG | + | chr2_3:29006460-29006479 | Msa0287000:intron | 20.0% |
| !! | ATGATCAATCAAAATATGAT+TGG | - | chr2_3:29006680-29006699 | None:intergenic | 20.0% |
| !!! | TGAAAAAACATATCAAGTTT+TGG | + | chr2_3:29007218-29007237 | Msa0287000:CDS | 20.0% |
| !!! | GAAAAAACATATCAAGTTTT+GGG | + | chr2_3:29007219-29007238 | Msa0287000:CDS | 20.0% |
| !!! | TTATTCTTTTGATTGTTCTT+AGG | - | chr2_3:29007325-29007344 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAACATGGT+CGG | - | chr2_3:29007483-29007502 | None:intergenic | 20.0% |
| !! | TAGGAAAGAAAAAAAAAACA+TGG | - | chr2_3:29007487-29007506 | None:intergenic | 20.0% |
| ! | AGAATACATACATACATGTA+AGG | + | chr2_3:29005562-29005581 | Msa0287000:five_prime_UTR | 25.0% |
| ! | GAATACATACATACATGTAA+GGG | + | chr2_3:29005563-29005582 | Msa0287000:five_prime_UTR | 25.0% |
| ! | CAAGAGCTATTATTATCATT+TGG | - | chr2_3:29005622-29005641 | None:intergenic | 25.0% |
| !! | TTTTTGCAAAGATGAAAAAG+TGG | + | chr2_3:29005651-29005670 | Msa0287000:CDS | 25.0% |
| !! | TGATTTTTATAGTACCTTAG+AGG | - | chr2_3:29006169-29006188 | None:intergenic | 25.0% |
| ! | CGAAGAATTGTGATTTAATA+TGG | + | chr2_3:29006288-29006307 | Msa0287000:intron | 25.0% |
| ! | TAATGATTTAAAAAGAGGGT+AGG | - | chr2_3:29006381-29006400 | None:intergenic | 25.0% |
| !!! | TATTAATTGGTGTTACTTCT+TGG | - | chr2_3:29006446-29006465 | None:intergenic | 25.0% |
| ! | ATAGCATCAGAAATAGAAAA+GGG | + | chr2_3:29006512-29006531 | Msa0287000:intron | 25.0% |
| ! | ATATTTGAACATAGCATGAT+AGG | - | chr2_3:29006587-29006606 | None:intergenic | 25.0% |
| ! | TCCTAAATCAGAAAACAATA+AGG | + | chr2_3:29006951-29006970 | Msa0287000:CDS | 25.0% |
| !! | TCCTTATTGTTTTCTGATTT+AGG | - | chr2_3:29006955-29006974 | None:intergenic | 25.0% |
| ! | AAGAAAAAAAAAACATGGTC+GGG | - | chr2_3:29007482-29007501 | None:intergenic | 25.0% |
| !! | TGAAGATCTTGATATTGATT+TGG | + | chr2_3:29007698-29007717 | Msa0287000:CDS | 25.0% |
| !!! | ATTAACAAAAGAGCATTCTT+TGG | - | chr2_3:29007804-29007823 | None:intergenic | 25.0% |
| ! | TTCAACTTTATCATCATCAA+TGG | - | chr2_3:29008252-29008271 | None:intergenic | 25.0% |
| ! | ATCATCAATAACAAACATTC+TGG | - | chr2_3:29008595-29008614 | None:intergenic | 25.0% |
| GTTAGAAAAGTTGAAACACA+TGG | + | chr2_3:29005594-29005613 | Msa0287000:exon | 30.0% | |
| TCTTCTTCTTTCACTCTAAT+TGG | - | chr2_3:29005877-29005896 | None:intergenic | 30.0% | |
| AAAATTGGTGCATCAAACAT+CGG | + | chr2_3:29005918-29005937 | Msa0287000:CDS | 30.0% | |
| ATAGAAGTGATAGCAATAGA+AGG | + | chr2_3:29006001-29006020 | Msa0287000:CDS | 30.0% | |
| ! | CAAGAAACTGATTCAAGAAT+TGG | + | chr2_3:29006084-29006103 | Msa0287000:CDS | 30.0% |
| ATTTAATATGGCAAGTAGTC+TGG | + | chr2_3:29006300-29006319 | Msa0287000:intron | 30.0% | |
| CATAGCATCAGAAATAGAAA+AGG | + | chr2_3:29006511-29006530 | Msa0287000:intron | 30.0% | |
| ACAAAAAAAGAGAAGAATGC+AGG | + | chr2_3:29006638-29006657 | Msa0287000:intron | 30.0% | |
| ATGCAACAATAATACGTGAA+AGG | - | chr2_3:29006722-29006741 | None:intergenic | 30.0% | |
| AATATCGCTTATTGTTACGA+AGG | - | chr2_3:29006756-29006775 | None:intergenic | 30.0% | |
| AGTTGAAAGCTTAAACAAAG+AGG | + | chr2_3:29006904-29006923 | Msa0287000:CDS | 30.0% | |
| GTTGAAAGCTTAAACAAAGA+GGG | + | chr2_3:29006905-29006924 | Msa0287000:CDS | 30.0% | |
| !!! | CTTAAACAAAGAGGGTATTT+TGG | + | chr2_3:29006913-29006932 | Msa0287000:CDS | 30.0% |
| TTGAGTATGAAGAAGTTCAA+GGG | + | chr2_3:29006990-29007009 | Msa0287000:CDS | 30.0% | |
| GAAAAATAGAGATGAAAGTG+AGG | + | chr2_3:29007090-29007109 | Msa0287000:CDS | 30.0% | |
| CGCATCTATTATCTATAGTT+AGG | - | chr2_3:29007380-29007399 | None:intergenic | 30.0% | |
| ACCTGCAGATTAAAAAAAGA+CGG | + | chr2_3:29007510-29007529 | Msa0287000:intron | 30.0% | |
| GAAAAGATACAAGAAGAGTT+TGG | + | chr2_3:29007726-29007745 | Msa0287000:CDS | 30.0% | |
| ! | AGAATGCTCTTTTGTTAATG+AGG | + | chr2_3:29007805-29007824 | Msa0287000:CDS | 30.0% |
| TAGATCTGATCCTGTTAAAA+TGG | + | chr2_3:29007830-29007849 | Msa0287000:CDS | 30.0% | |
| GATGTTCTTCTACTTCAATT+TGG | - | chr2_3:29007905-29007924 | None:intergenic | 30.0% | |
| GATGAAGATGAAAATGAAGT+TGG | + | chr2_3:29008215-29008234 | Msa0287000:CDS | 30.0% | |
| !! | GATGAAAATGAAGTTGGTAA+TGG | + | chr2_3:29008221-29008240 | Msa0287000:CDS | 30.0% |
| ATCAACTAAAACACATGGAA+AGG | - | chr2_3:29008276-29008295 | None:intergenic | 30.0% | |
| AGTGAATCAACTAAAACACA+TGG | - | chr2_3:29008281-29008300 | None:intergenic | 30.0% | |
| TTCTTCATCTTCTACTTGAT+GGG | - | chr2_3:29008339-29008358 | None:intergenic | 30.0% | |
| TTTCTTCATCTTCTACTTGA+TGG | - | chr2_3:29008340-29008359 | None:intergenic | 30.0% | |
| AAGAAGCTATGAAAGTTTCA+GGG | - | chr2_3:29008406-29008425 | None:intergenic | 30.0% | |
| AGAAGAAAAAGTTTCAACAG+AGG | + | chr2_3:29008466-29008485 | Msa0287000:CDS | 30.0% | |
| GTTGTTCAAAATCTCGTAAT+GGG | + | chr2_3:29008882-29008901 | Msa0287000:CDS | 30.0% | |
| ! | TGAATCTACTTGAAGAGTGT+TGG | + | chr2_3:29005680-29005699 | Msa0287000:CDS | 35.0% |
| GAATGACACCTTAACATCTT+TGG | - | chr2_3:29005733-29005752 | None:intergenic | 35.0% | |
| !! | ATTAGTCTTGTTGAAGGGTA+AGG | - | chr2_3:29005760-29005779 | None:intergenic | 35.0% |
| !! | AGCTGATTAGTCTTGTTGAA+GGG | - | chr2_3:29005765-29005784 | None:intergenic | 35.0% |
| ! | AATCAGCTCAGAACTTTTGA+AGG | + | chr2_3:29005777-29005796 | Msa0287000:CDS | 35.0% |
| AGGATGAACAAAATCACCAT+CGG | - | chr2_3:29005824-29005843 | None:intergenic | 35.0% | |
| TCTTCTTTCACTCTAATTGG+TGG | - | chr2_3:29005874-29005893 | None:intergenic | 35.0% | |
| CATCATTGTGCAAAGATGAA+AGG | + | chr2_3:29005970-29005989 | Msa0287000:CDS | 35.0% | |
| AGAGAAGAATGCAGGAATAT+AGG | + | chr2_3:29006646-29006665 | Msa0287000:intron | 35.0% | |
| !!! | TCAACTTCGATGTTTTTAGC+CGG | - | chr2_3:29006890-29006909 | None:intergenic | 35.0% |
| !! | TATTTTGGAGATGAGGAGAA+AGG | + | chr2_3:29006928-29006947 | Msa0287000:CDS | 35.0% |
| CTTCATACTCAAGATCACTT+AGG | - | chr2_3:29006982-29007001 | None:intergenic | 35.0% | |
| CTTGAGTATGAAGAAGTTCA+AGG | + | chr2_3:29006989-29007008 | Msa0287000:CDS | 35.0% | |
| GGAATTATGTTAGCTAAGCT+TGG | - | chr2_3:29007058-29007077 | None:intergenic | 35.0% | |
| AGCTTAGCTAACATAATTCC+TGG | + | chr2_3:29007058-29007077 | Msa0287000:CDS | 35.0% | |
| !! | CTATTTTTCTCTTGCAAACC+AGG | - | chr2_3:29007079-29007098 | None:intergenic | 35.0% |
| ! | TTATTTCCCCAATTTGGAAC+AGG | - | chr2_3:29007181-29007200 | None:intergenic | 35.0% |
| ! | GACATCTTATTTCCCCAATT+TGG | - | chr2_3:29007187-29007206 | None:intergenic | 35.0% |
| TTAGTCATCCACAAAGTTGA+TGG | - | chr2_3:29007409-29007428 | None:intergenic | 35.0% | |
| AAAAAAAAACATGGTCGGGA+GGG | - | chr2_3:29007478-29007497 | None:intergenic | 35.0% | |
| AAAAAAAAAACATGGTCGGG+AGG | - | chr2_3:29007479-29007498 | None:intergenic | 35.0% | |
| ! | TTTTTAATCTGCAGGTGGAT+AGG | - | chr2_3:29007506-29007525 | None:intergenic | 35.0% |
| !!! | GTCTTTTTTTAATCTGCAGG+TGG | - | chr2_3:29007511-29007530 | None:intergenic | 35.0% |
| !!! | ACCGTCTTTTTTTAATCTGC+AGG | - | chr2_3:29007514-29007533 | None:intergenic | 35.0% |
| AAGATACAAGAAGAGTTTGG+TGG | + | chr2_3:29007729-29007748 | Msa0287000:CDS | 35.0% | |
| GTAGAAGAAGATGAAGAGAA+AGG | + | chr2_3:29007756-29007775 | Msa0287000:CDS | 35.0% | |
| !! | AACAAAAGAGCATTCTTTGG+TGG | - | chr2_3:29007801-29007820 | None:intergenic | 35.0% |
| GAATAGGTGATTCCCAAAAA+CGG | - | chr2_3:29007869-29007888 | None:intergenic | 35.0% | |
| !! | TGGTCTTGTTCTTTGTGAAT+AGG | - | chr2_3:29007885-29007904 | None:intergenic | 35.0% |
| AGATGTAGAACAAGAACAAG+AGG | + | chr2_3:29007935-29007954 | Msa0287000:CDS | 35.0% | |
| TGTTGAACATGAACATGAAG+AGG | + | chr2_3:29007983-29008002 | Msa0287000:CDS | 35.0% | |
| !! | CAATGAACAAAGCATCGAAA+TGG | + | chr2_3:29008031-29008050 | Msa0287000:CDS | 35.0% |
| TAGCTACTTCATCAACTTCT+TGG | - | chr2_3:29008178-29008197 | None:intergenic | 35.0% | |
| TGATGAAGTAGCTAATGAAG+AGG | + | chr2_3:29008184-29008203 | Msa0287000:CDS | 35.0% | |
| AGAAGCTATGAAAGTTTCAG+GGG | - | chr2_3:29008405-29008424 | None:intergenic | 35.0% | |
| GAAGAAGCTATGAAAGTTTC+AGG | - | chr2_3:29008407-29008426 | None:intergenic | 35.0% | |
| GAAACTTCCATTGAAAGCTT+TGG | - | chr2_3:29008626-29008645 | None:intergenic | 35.0% | |
| GCTTTCAATGGAAGTTTCAA+AGG | + | chr2_3:29008628-29008647 | Msa0287000:CDS | 35.0% | |
| TGGAAGTTTCAAAGGAAACA+TGG | + | chr2_3:29008636-29008655 | Msa0287000:CDS | 35.0% | |
| GGAAGTTTCAAAGGAAACAT+GGG | + | chr2_3:29008637-29008656 | Msa0287000:CDS | 35.0% | |
| !! | TATGCAGCACTGATTTCATA+CGG | + | chr2_3:29008660-29008679 | Msa0287000:CDS | 35.0% |
| TGTAGATGAAGATGATTCCA+CGG | - | chr2_3:29008738-29008757 | None:intergenic | 35.0% | |
| ATCTACAAAGCCGAAAGTTA+AGG | + | chr2_3:29008751-29008770 | Msa0287000:CDS | 35.0% | |
| GGTTGTTCAAAATCTCGTAA+TGG | + | chr2_3:29008881-29008900 | Msa0287000:CDS | 35.0% | |
| !! | CTTCTTGTTTCTGGAATAAC+CGG | + | chr2_3:29008975-29008994 | Msa0287000:CDS | 35.0% |
| !! | GAGCTGATTAGTCTTGTTGA+AGG | - | chr2_3:29005766-29005785 | None:intergenic | 40.0% |
| TGAACAAAATCACCATCGGA+TGG | - | chr2_3:29005820-29005839 | None:intergenic | 40.0% | |
| ! | ACTCTAATTGGTGGCATAGA+TGG | - | chr2_3:29005865-29005884 | None:intergenic | 40.0% |
| CATCTTTGCCTCCAACAATA+GGG | + | chr2_3:29006046-29006065 | Msa0287000:CDS | 40.0% | |
| ! | TTTTCCTCTCTCCCTATTGT+TGG | - | chr2_3:29006060-29006079 | None:intergenic | 40.0% |
| GGAGGCAAGTTGTCATTATT+GGG | - | chr2_3:29006138-29006157 | None:intergenic | 40.0% | |
| TGGAGGCAAGTTGTCATTAT+TGG | - | chr2_3:29006139-29006158 | None:intergenic | 40.0% | |
| ATAATGACAACTTGCCTCCA+AGG | + | chr2_3:29006139-29006158 | Msa0287000:CDS | 40.0% | |
| AGTACCTTAGAGGTTAACCT+TGG | - | chr2_3:29006159-29006178 | None:intergenic | 40.0% | |
| TCGTTTATGATTAAGCGCGT+AGG | + | chr2_3:29006232-29006251 | Msa0287000:intron | 40.0% | |
| ATATGGCAAGTAGTCTGGTA+CGG | + | chr2_3:29006305-29006324 | Msa0287000:intron | 40.0% | |
| !! | TTTTTAGCCGGTCTACTTCT+TGG | - | chr2_3:29006878-29006897 | None:intergenic | 40.0% |
| !!! | AAGAGGGTATTTTGGAGATG+AGG | + | chr2_3:29006921-29006940 | Msa0287000:CDS | 40.0% |
| TGAAGAAGTTCAAGGGTTCA+AGG | + | chr2_3:29006997-29007016 | Msa0287000:CDS | 40.0% | |
| AGTTCAAGGGTTCAAGGATT+TGG | + | chr2_3:29007003-29007022 | Msa0287000:CDS | 40.0% | |
| GTTCAAGGGTTCAAGGATTT+GGG | + | chr2_3:29007004-29007023 | Msa0287000:CDS | 40.0% | |
| AAGAGGACCTTACTTATCAG+AGG | + | chr2_3:29007126-29007145 | Msa0287000:CDS | 40.0% | |
| AACCATGCCTCTGATAAGTA+AGG | - | chr2_3:29007136-29007155 | None:intergenic | 40.0% | |
| ! | TTACTTATCAGAGGCATGGT+TGG | + | chr2_3:29007135-29007154 | Msa0287000:CDS | 40.0% |
| AACTCCTCCTGTTCCAAATT+GGG | + | chr2_3:29007171-29007190 | Msa0287000:CDS | 40.0% | |
| AAAAAAAACATGGTCGGGAG+GGG | - | chr2_3:29007477-29007496 | None:intergenic | 40.0% | |
| GTGAGAGGAGTTATAGTCAA+AGG | + | chr2_3:29007664-29007683 | Msa0287000:CDS | 40.0% | |
| TCCTGTTAAAATGGCTGCTT+TGG | + | chr2_3:29007839-29007858 | Msa0287000:CDS | 40.0% | |
| !! | TGCTTTGGCTAACCGTTTTT+GGG | + | chr2_3:29007854-29007873 | Msa0287000:CDS | 40.0% |
| CAAGAACAAGAGGAAGATAG+TGG | + | chr2_3:29007945-29007964 | Msa0287000:CDS | 40.0% | |
| GAGGAACAAGTAGAAGAACA+AGG | + | chr2_3:29008002-29008021 | Msa0287000:CDS | 40.0% | |
| !! | TGATGGGTTTCTTCTGTTTC+TGG | - | chr2_3:29008323-29008342 | None:intergenic | 40.0% |
| TGTGAAGCCAAAGCTTTCAA+TGG | + | chr2_3:29008616-29008635 | Msa0287000:intron | 40.0% | |
| TGATTTCATACGGTGGTTAC+CGG | + | chr2_3:29008670-29008689 | Msa0287000:CDS | 40.0% | |
| AAACAACATGAAGATCTCGG+CGG | - | chr2_3:29008806-29008825 | None:intergenic | 40.0% | |
| GGCAAACAACATGAAGATCT+CGG | - | chr2_3:29008809-29008828 | None:intergenic | 40.0% | |
| ! | GAGATCTTCATGTTGTTTGC+CGG | + | chr2_3:29008808-29008827 | Msa0287000:CDS | 40.0% |
| CAACTTCTGCTCAATCATAG+TGG | - | chr2_3:29008858-29008877 | None:intergenic | 40.0% | |
| CACTATGATTGAGCAGAAGT+TGG | + | chr2_3:29008856-29008875 | Msa0287000:CDS | 40.0% | |
| TATGATTGAGCAGAAGTTGG+TGG | + | chr2_3:29008859-29008878 | Msa0287000:CDS | 40.0% | |
| ! | ATGATTGAGCAGAAGTTGGT+GGG | + | chr2_3:29008860-29008879 | Msa0287000:CDS | 40.0% |
| TCAGCAAGTAAACCATCCGA+TGG | + | chr2_3:29005805-29005824 | Msa0287000:CDS | 45.0% | |
| ATCGGATTCTGCTATGCACT+GGG | + | chr2_3:29005936-29005955 | Msa0287000:CDS | 45.0% | |
| CCTATTGTTGGAGGCAAAGA+TGG | - | chr2_3:29006048-29006067 | None:intergenic | 45.0% | |
| CCATCTTTGCCTCCAACAAT+AGG | + | chr2_3:29006045-29006064 | Msa0287000:CDS | 45.0% | |
| !!! | AGGTGTCGATGGTTGTTTTC+GGG | - | chr2_3:29006115-29006134 | None:intergenic | 45.0% |
| !!! | GAGGTGTCGATGGTTGTTTT+CGG | - | chr2_3:29006116-29006135 | None:intergenic | 45.0% |
| !! | TCATTATTGGGAGGTGTCGA+TGG | - | chr2_3:29006126-29006145 | None:intergenic | 45.0% |
| GGCAAGTTGTCATTATTGGG+AGG | - | chr2_3:29006135-29006154 | None:intergenic | 45.0% | |
| ACCTTAGAGGTTAACCTTGG+AGG | - | chr2_3:29006156-29006175 | None:intergenic | 45.0% | |
| !! | TGGTGTTACTTCTTGGTGCT+AGG | - | chr2_3:29006439-29006458 | None:intergenic | 45.0% |
| CAGCATTCCAAGAAGTAGAC+CGG | + | chr2_3:29006868-29006887 | Msa0287000:CDS | 45.0% | |
| GAGGAAGATAAAGCAGCAAG+AGG | + | chr2_3:29007109-29007128 | Msa0287000:CDS | 45.0% | |
| GACCTTACTTATCAGAGGCA+TGG | + | chr2_3:29007131-29007150 | Msa0287000:CDS | 45.0% | |
| CAACTCCTCCTGTTCCAAAT+TGG | + | chr2_3:29007170-29007189 | Msa0287000:CDS | 45.0% | |
| ACTCCTCCTGTTCCAAATTG+GGG | + | chr2_3:29007172-29007191 | Msa0287000:CDS | 45.0% | |
| ! | TTTCCCCAATTTGGAACAGG+AGG | - | chr2_3:29007178-29007197 | None:intergenic | 45.0% |
| ! | CGAAGCATCCATCAACTTTG+TGG | + | chr2_3:29007398-29007417 | Msa0287000:intron | 45.0% |
| TCTCCGTCGAAAAACCTAGT+TGG | + | chr2_3:29007429-29007448 | Msa0287000:intron | 45.0% | |
| !! | TGGCCAACTAGGTTTTTCGA+CGG | - | chr2_3:29007435-29007454 | None:intergenic | 45.0% |
| GATGTTTGACCCACTAAAGG+TGG | - | chr2_3:29007455-29007474 | None:intergenic | 45.0% | |
| !! | GCCAAAGCAGCCATTTTAAC+AGG | - | chr2_3:29007843-29007862 | None:intergenic | 45.0% |
| ! | CTGCTTTGGCTAACCGTTTT+TGG | + | chr2_3:29007853-29007872 | Msa0287000:CDS | 45.0% |
| AAGTGAAGCACAAGCTAGTG+AGG | + | chr2_3:29008124-29008143 | Msa0287000:CDS | 45.0% | |
| GAAAGTTTCAGGGGAAGAAG+AGG | - | chr2_3:29008396-29008415 | None:intergenic | 45.0% | |
| AATCCATCAAGTACTCGACC+CGG | + | chr2_3:29008499-29008518 | Msa0287000:intron | 45.0% | |
| ! | GGTAACCTTTTTCTCCACTC+CGG | - | chr2_3:29008717-29008736 | None:intergenic | 45.0% |
| AGTGGAGAAAAAGGTTACCG+TGG | + | chr2_3:29008718-29008737 | Msa0287000:CDS | 45.0% | |
| GCAGGCTTCACCTTAACTTT+CGG | - | chr2_3:29008764-29008783 | None:intergenic | 45.0% | |
| CATAGTGGCCATAGACATTC+CGG | - | chr2_3:29008843-29008862 | None:intergenic | 45.0% | |
| TTACAGCGCGTGAGAACAAA+TGG | - | chr2_3:29008914-29008933 | None:intergenic | 45.0% | |
| TTCCAGAAACAAGAAGCCTC+CGG | - | chr2_3:29008971-29008990 | None:intergenic | 45.0% | |
| GGTGCTCTTTGCAGCTTCTT+AGG | - | chr2_3:29005844-29005863 | None:intergenic | 50.0% | |
| CATCGGATTCTGCTATGCAC+TGG | + | chr2_3:29005935-29005954 | Msa0287000:CDS | 50.0% | |
| TCCTCTCTCCCTATTGTTGG+AGG | - | chr2_3:29006057-29006076 | None:intergenic | 50.0% | |
| GCCTCCAAGGTTAACCTCTA+AGG | + | chr2_3:29006152-29006171 | Msa0287000:CDS | 50.0% | |
| GTCTGGTACGGTTCCAATCA+CGG | + | chr2_3:29006317-29006336 | Msa0287000:intron | 50.0% | |
| AACTGCAACGTGACCGTGAT+TGG | - | chr2_3:29006333-29006352 | None:intergenic | 50.0% | |
| ACCTAGTTGGCCACCTTTAG+TGG | + | chr2_3:29007442-29007461 | Msa0287000:intron | 50.0% | |
| CCTAGTTGGCCACCTTTAGT+GGG | + | chr2_3:29007443-29007462 | Msa0287000:intron | 50.0% | |
| GGGGATGTTTGACCCACTAA+AGG | - | chr2_3:29007458-29007477 | None:intergenic | 50.0% | |
| ! | GGGTCGAGTACTTGATGGAT+TGG | - | chr2_3:29008500-29008519 | None:intergenic | 50.0% |
| TTTCCGGGTCGAGTACTTGA+TGG | - | chr2_3:29008505-29008524 | None:intergenic | 50.0% | |
| TCAAGTACTCGACCCGGAAA+TGG | + | chr2_3:29008505-29008524 | Msa0287000:intron | 50.0% | |
| CAAGTACTCGACCCGGAAAT+GGG | + | chr2_3:29008506-29008525 | Msa0287000:intron | 50.0% | |
| !! | GCAGCACTGATTTCATACGG+TGG | + | chr2_3:29008663-29008682 | Msa0287000:CDS | 50.0% |
| ! | AACCTTTTTCTCCACTCCGG+CGG | - | chr2_3:29008714-29008733 | None:intergenic | 50.0% |
| ! | TCATGTTGTTTGCCGGTGAC+CGG | + | chr2_3:29008815-29008834 | Msa0287000:CDS | 50.0% |
| TGTTCTCACGCGCTGTAAGT+CGG | + | chr2_3:29008916-29008935 | Msa0287000:CDS | 50.0% | |
| ! | GAGGATGCGGTTCAAGTTTC+CGG | - | chr2_3:29008997-29009016 | None:intergenic | 50.0% |
| GATTCTGCTATGCACTGGGC+AGG | + | chr2_3:29005940-29005959 | Msa0287000:CDS | 55.0% | |
| GCCTCCAACAATAGGGAGAG+AGG | + | chr2_3:29006053-29006072 | Msa0287000:CDS | 55.0% | |
| CACGGTCACGTTGCAGTTAC+AGG | + | chr2_3:29006335-29006354 | Msa0287000:intron | 55.0% | |
| CCCACTAAAGGTGGCCAACT+AGG | - | chr2_3:29007446-29007465 | None:intergenic | 55.0% | |
| ! | GACCCGGAAATGGGTCTTGT+CGG | + | chr2_3:29008515-29008534 | Msa0287000:intron | 55.0% |
| ! | ACCCGGAAATGGGTCTTGTC+GGG | + | chr2_3:29008516-29008535 | Msa0287000:intron | 55.0% |
| ACCCGACAAGACCCATTTCC+GGG | - | chr2_3:29008520-29008539 | None:intergenic | 55.0% | |
| GACCCGACAAGACCCATTTC+CGG | - | chr2_3:29008521-29008540 | None:intergenic | 55.0% | |
| ! | ACCTTTTTCTCCACTCCGGC+GGG | - | chr2_3:29008713-29008732 | None:intergenic | 55.0% |
| TAAGTCGGAGCCGATGAGGT+CGG | + | chr2_3:29008931-29008950 | Msa0287000:CDS | 55.0% | |
| ACTTGAACCGCATCCTCCTC+CGG | + | chr2_3:29009000-29009019 | Msa0287000:CDS | 55.0% | |
| GGGTCAGCAGAGCGAGGATA+TGG | + | chr2_3:29008536-29008555 | Msa0287000:intron | 60.0% | |
| TGGTTACCGGAGAGACCCAC+CGG | + | chr2_3:29008683-29008702 | Msa0287000:CDS | 60.0% | |
| ! | GGTTTTCCGGTGGGTCTCTC+CGG | - | chr2_3:29008692-29008711 | None:intergenic | 60.0% |
| ACCCGCCGGAGTGGAGAAAA+AGG | + | chr2_3:29008709-29008728 | Msa0287000:CDS | 60.0% | |
| TGCATCAACGGCGGATGAGC+AGG | - | chr2_3:29008782-29008801 | None:intergenic | 60.0% | |
| GATCTCGGCGGCTGCATCAA+CGG | - | chr2_3:29008794-29008813 | None:intergenic | 60.0% | |
| ! | GACCGGTGCCGGAATGTCTA+TGG | + | chr2_3:29008832-29008851 | Msa0287000:CDS | 60.0% |
| GGCCATAGACATTCCGGCAC+CGG | - | chr2_3:29008837-29008856 | None:intergenic | 60.0% | |
| GCTGTAAGTCGGAGCCGATG+AGG | + | chr2_3:29008927-29008946 | Msa0287000:CDS | 60.0% | |
| AGCTTCGTCGCCGACCTCAT+CGG | - | chr2_3:29008944-29008963 | None:intergenic | 60.0% | |
| ! | CGCCGGAGGCTTCTTGTTTC+TGG | + | chr2_3:29008966-29008985 | Msa0287000:CDS | 60.0% |
| AACGCTTGGAGTCGGAGCTC+CGG | + | chr2_3:29009024-29009043 | Msa0287000:CDS | 60.0% | |
| CTTGTCGGGTCAGCAGAGCG+AGG | + | chr2_3:29008530-29008549 | Msa0287000:intron | 65.0% | |
| AGACCCACCGGAAAACCCGC+CGG | + | chr2_3:29008695-29008714 | Msa0287000:CDS | 65.0% | |
| !! | ACTCCGGCGGGTTTTCCGGT+GGG | - | chr2_3:29008701-29008720 | None:intergenic | 65.0% |
| !! | CTCCACTCCGGCGGGTTTTC+CGG | - | chr2_3:29008705-29008724 | None:intergenic | 65.0% |
| TGTTTGCCGGTGACCGGTGC+CGG | + | chr2_3:29008821-29008840 | Msa0287000:CDS | 65.0% | |
| !! | GACATTCCGGCACCGGTCAC+CGG | - | chr2_3:29008830-29008849 | None:intergenic | 65.0% |
| AGCGTTGCCGGAGGAGGATG+CGG | - | chr2_3:29009010-29009029 | None:intergenic | 65.0% | |
| CATCCTCCTCCGGCAACGCT+TGG | + | chr2_3:29009010-29009029 | Msa0287000:CDS | 65.0% | |
| ! | ACTCCAAGCGTTGCCGGAGG+AGG | - | chr2_3:29009016-29009035 | None:intergenic | 65.0% |
| CCTCCGGCAACGCTTGGAGT+CGG | + | chr2_3:29009016-29009035 | Msa0287000:CDS | 65.0% | |
| ! | GCTCCGACTCCAAGCGTTGC+CGG | - | chr2_3:29009022-29009041 | None:intergenic | 65.0% |
| TCGGAGCTCCGGCTGGTGTT+GGG | + | chr2_3:29009035-29009054 | Msa0287000:CDS | 65.0% | |
| !! | CACTCCGGCGGGTTTTCCGG+TGG | - | chr2_3:29008702-29008721 | None:intergenic | 70.0% |
| CACCGGAAAACCCGCCGGAG+TGG | + | chr2_3:29008700-29008719 | Msa0287000:CDS | 70.0% | |
| CTCGGCGGCTGCATCAACGG+CGG | - | chr2_3:29008791-29008810 | None:intergenic | 70.0% | |
| GTCGGCGACGAAGCTTGCGC+CGG | + | chr2_3:29008949-29008968 | Msa0287000:CDS | 70.0% | |
| ! | CCGACTCCAAGCGTTGCCGG+AGG | - | chr2_3:29009019-29009038 | None:intergenic | 70.0% |
| CTTGGAGTCGGAGCTCCGGC+TGG | + | chr2_3:29009028-29009047 | Msa0287000:CDS | 70.0% | |
| GTCGGAGCTCCGGCTGGTGT+TGG | + | chr2_3:29009034-29009053 | Msa0287000:CDS | 70.0% | |
| GGCGACGAAGCTTGCGCCGG+AGG | + | chr2_3:29008952-29008971 | Msa0287000:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 29005517 | 29009063 | 29005517 | ID=Msa0287000;Name=Msa0287000 |
| chr2_3 | mRNA | 29005517 | 29009063 | 29005517 | ID=Msa0287000-mRNA-1;Parent=Msa0287000;Name=Msa0287000-mRNA-1;_AED=0.06;_eAED=0.07;_QI=96|0.33|0.25|1|1|1|4|0|743 |
| chr2_3 | exon | 29005517 | 29006173 | 29005517 | ID=Msa0287000-mRNA-1:exon:10188;Parent=Msa0287000-mRNA-1 |
| chr2_3 | exon | 29006863 | 29007265 | 29006863 | ID=Msa0287000-mRNA-1:exon:10189;Parent=Msa0287000-mRNA-1 |
| chr2_3 | exon | 29007661 | 29008487 | 29007661 | ID=Msa0287000-mRNA-1:exon:10190;Parent=Msa0287000-mRNA-1 |
| chr2_3 | exon | 29008623 | 29009063 | 29008623 | ID=Msa0287000-mRNA-1:exon:10191;Parent=Msa0287000-mRNA-1 |
| chr2_3 | five_prime_UTR | 29005517 | 29005612 | 29005517 | ID=Msa0287000-mRNA-1:five_prime_utr;Parent=Msa0287000-mRNA-1 |
| chr2_3 | CDS | 29005613 | 29006173 | 29005613 | ID=Msa0287000-mRNA-1:cds;Parent=Msa0287000-mRNA-1 |
| chr2_3 | CDS | 29006863 | 29007265 | 29006863 | ID=Msa0287000-mRNA-1:cds;Parent=Msa0287000-mRNA-1 |
| chr2_3 | CDS | 29007661 | 29008487 | 29007661 | ID=Msa0287000-mRNA-1:cds;Parent=Msa0287000-mRNA-1 |
| chr2_3 | CDS | 29008623 | 29009063 | 29008623 | ID=Msa0287000-mRNA-1:cds;Parent=Msa0287000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
