AlfalfaGEDB | Msa0215830

M. sativa cultivar zhongmu-4 / Msa0215830

KEGG: -
GO: -
PFAM: PF04935.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0215830	PNY13417.1	62.626	198	45	3	1	175	102	293	2.61e-66	216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0215830	A0A2K3PDP7	62.626	198	45	3	1	175	102	293	1.24e-66	216

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa0215830	-0.812991	3.207688e-51	-8.615850e-47
Msa0017510	Msa0215830	0.813455	2.537156e-51	-8.615850e-47
Msa0101710	Msa0215830	0.805448	1.328410e-49	-8.615850e-47
Msa0113790	Msa0215830	0.819569	1.084356e-52	-8.615850e-47
Msa0157290	Msa0215830	0.812752	3.618971e-51	-8.615850e-47
Msa0165220	Msa0215830	0.803257	3.800031e-49	-8.615850e-47
Msa0188630	Msa0215830	0.810800	9.627244e-51	-8.615850e-47
Msa0192060	Msa0215830	0.804215	2.404150e-49	-8.615850e-47
Msa0195770	Msa0215830	0.805436	1.336104e-49	-8.615850e-47
Msa0210450	Msa0215830	0.813133	2.987133e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0215830	MtrunA17_Chr5g0399351	61.929	197	48	4	10	179	109	305	2.88e-65	204
Msa0215830	MtrunA17_Chr2g0317181	79.208	101	19	1	91	191	1	99	2.29e-45	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0215830	AT5G05210.1	45.588	204	79	6	1	179	144	340	9.77e-41	142
Msa0215830	AT5G05210.2	45.588	204	79	6	1	179	136	332	1.13e-40	142
Msa0215830	AT2G27750.1	45.946	111	54	3	74	179	39	148	4.79e-20	83.2

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Find 46 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGAAGAGTTTCGGTC+AGG	0.519958	2_1:-61367440	Msa0215830:CDS
AAGAAAGATAGAGTTTCCGG+AGG	0.655190	2_1:-61367375	Msa0215830:CDS
AAGAAGAATGATCCTGAGAA+GGG	0.591026	2_1:-61367212	Msa0215830:CDS
AATGAATGACAGCGATGGAG+AGG	0.585376	2_1:-61367549	Msa0215830:CDS
AATGACAGCGATGGAGAGGA+AGG	0.580649	2_1:-61367545	Msa0215830:CDS
AGAGTTTCCGGAGGAGAAGG+TGG	0.570130	2_1:-61367366	Msa0215830:CDS
AGCAGAAAATCGCAGTGAAA+TGG	0.374864	2_1:-61367073	Msa0215830:CDS
AGCAGCAATGAATAGAGCTT+CGG	0.425070	2_1:-61367159	Msa0215830:CDS
AGGGTTCAAAGTTCAAACAA+AGG	0.644899	2_1:-61367044	Msa0215830:CDS
AGGTCCTAACTGTGCAAATC+TGG	0.341251	2_1:-61367420	Msa0215830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGGAAAATGCTAATAAG+AGG	-	chr2_1:61367140-61367159	Msa0215830:CDS	30.0%
TCTGGAAAATGCTAATAAGA+GGG	-	chr2_1:61367141-61367160	Msa0215830:CDS	30.0%
TGAAAGAAAGATAGAGTTTC+CGG	-	chr2_1:61367165-61367184	Msa0215830:CDS	30.0%
GTATACAGAAATGGAAGAAT+AGG	-	chr2_1:61367446-61367465	Msa0215830:CDS	30.0%
ATCGCAAACTTGAAGAGTTT+CGG	-	chr2_1:61367098-61367117	Msa0215830:CDS	35.0%
GGCAATGTTAAACTTCAGAA+TGG	-	chr2_1:61367238-61367257	Msa0215830:CDS	35.0%
TTCAGAATGGTGAAATGCAA+GGG	-	chr2_1:61367251-61367270	Msa0215830:CDS	35.0%
TGAAAGAGCTAAGAAGTTAG+AGG	-	chr2_1:61367303-61367322	Msa0215830:CDS	35.0%
AAGAAGAATGATCCTGAGAA+GGG	-	chr2_1:61367331-61367350	Msa0215830:CDS	35.0%
CTATTGCTAAAAAGGAAGCA+TGG	-	chr2_1:61367359-61367378	Msa0215830:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	61366995	61367570	61366995	ID=Msa0215830;Name=Msa0215830
chr2_1	mRNA	61366995	61367570	61366995	ID=Msa0215830-mRNA-1;Parent=Msa0215830;Name=Msa0215830-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|191
chr2_1	exon	61366995	61367570	61366995	ID=Msa0215830-mRNA-1:exon:16937;Parent=Msa0215830-mRNA-1
chr2_1	CDS	61366995	61367570	61366995	ID=Msa0215830-mRNA-1:cds;Parent=Msa0215830-mRNA-1

Gene Sequence

>Msa0215830

ATGAATGACAGCGATGGAGAGGAAGGTGCGGTTAAGCCTTTCATGTCGGGGTTGGAAGCAGATGATCGGTTTACGACCTTTGAAGAACTACACGAAAGGCTTCATCGCAAACTTGAAGAGTTTCGGTCAGGTCCTAACTGTGCAAATCTGGAAAATGCTAATAAGAGGGATGAAAGAAAGATAGAGTTTCCGGAGGAGAAGGTGGTAAAGGAGGCCACAGAGTCTTTAAAAGAGCTTGTGTTTGGCAATGTTAAACTTCAGAATGGTGAAATGCAAGGGAAGAGAAAAGTTTCCAAGCACAAGGAACTTGAAAGAGCTAAGAAGTTAGAGGAAGTGAAGAAGAATGATCCTGAGAAGGGTGAAGCTATTGCTAAAAAGGAAGCATGGAAAGCAGCAATGAATAGAGCTTCGGGAATCAAGGTTCATGATGATCCTAAACTGATAAAGAGAAGTATACAGAAATGGAAGAATAGGCAGCAGAAAATCGCAGTGAAATGGGAAGAGAGGGTTCAAAGTTCAAACAAAGGATCAGTTGAAGGCAGAGAAACAACAAAAAAGGTATGCAAATATAGCTGA

Protein sequence

>Msa0215830

MNDSDGEEGAVKPFMSGLEADDRFTTFEELHERLHRKLEEFRSGPNCANLENANKRDERKIEFPEEKVVKEATESLKELVFGNVKLQNGEMQGKRKVSKHKELERAKKLEEVKKNDPEKGEAIAKKEAWKAAMNRASGIKVHDDPKLIKRSIQKWKNRQQKIAVKWEERVQSSNKGSVEGRETTKKVCKYS*