Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215830 | PNY13417.1 | 62.626 | 198 | 45 | 3 | 1 | 175 | 102 | 293 | 2.61e-66 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215830 | A0A2K3PDP7 | 62.626 | 198 | 45 | 3 | 1 | 175 | 102 | 293 | 1.24e-66 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0215830 | -0.812991 | 3.207688e-51 | -8.615850e-47 |
| Msa0017510 | Msa0215830 | 0.813455 | 2.537156e-51 | -8.615850e-47 |
| Msa0101710 | Msa0215830 | 0.805448 | 1.328410e-49 | -8.615850e-47 |
| Msa0113790 | Msa0215830 | 0.819569 | 1.084356e-52 | -8.615850e-47 |
| Msa0157290 | Msa0215830 | 0.812752 | 3.618971e-51 | -8.615850e-47 |
| Msa0165220 | Msa0215830 | 0.803257 | 3.800031e-49 | -8.615850e-47 |
| Msa0188630 | Msa0215830 | 0.810800 | 9.627244e-51 | -8.615850e-47 |
| Msa0192060 | Msa0215830 | 0.804215 | 2.404150e-49 | -8.615850e-47 |
| Msa0195770 | Msa0215830 | 0.805436 | 1.336104e-49 | -8.615850e-47 |
| Msa0210450 | Msa0215830 | 0.813133 | 2.987133e-51 | -8.615850e-47 |
| Msa0215830 | Msa0215840 | 0.801154 | 1.029478e-48 | -8.615850e-47 |
| Msa0215830 | Msa0220580 | 0.804052 | 2.598826e-49 | -8.615850e-47 |
| Msa0215830 | Msa0222890 | 0.800983 | 1.115844e-48 | -8.615850e-47 |
| Msa0215830 | Msa0243710 | 0.809817 | 1.568760e-50 | -8.615850e-47 |
| Msa0215830 | Msa0258760 | 0.819952 | 8.863647e-53 | -8.615850e-47 |
| Msa0215830 | Msa0260950 | -0.800885 | 1.168076e-48 | -8.615850e-47 |
| Msa0215830 | Msa0265380 | 0.801022 | 1.095178e-48 | -8.615850e-47 |
| Msa0215830 | Msa0270100 | 0.822054 | 2.908950e-53 | -8.615850e-47 |
| Msa0215830 | Msa0270270 | 0.812102 | 5.018542e-51 | -8.615850e-47 |
| Msa0215830 | Msa0272690 | 0.813097 | 3.041900e-51 | -8.615850e-47 |
| Msa0215830 | Msa0279790 | 0.805324 | 1.410520e-49 | -8.615850e-47 |
| Msa0215830 | Msa0282250 | 0.822311 | 2.535236e-53 | -8.615850e-47 |
| Msa0215830 | Msa0287000 | 0.817190 | 3.750645e-52 | -8.615850e-47 |
| Msa0215830 | Msa0287650 | 0.819582 | 1.076713e-52 | -8.615850e-47 |
| Msa0215830 | Msa0321860 | 0.807148 | 5.824265e-50 | -8.615850e-47 |
| Msa0215830 | Msa0323080 | 0.819001 | 1.460704e-52 | -8.615850e-47 |
| Msa0215830 | Msa0333030 | 0.819883 | 9.192759e-53 | -8.615850e-47 |
| Msa0215830 | Msa0333720 | -0.810604 | 1.061055e-50 | -8.615850e-47 |
| Msa0215830 | Msa0336420 | 0.806351 | 8.581468e-50 | -8.615850e-47 |
| Msa0215830 | Msa0337620 | 0.800039 | 1.737114e-48 | -8.615850e-47 |
| Msa0215830 | Msa0344830 | 0.818702 | 1.707873e-52 | -8.615850e-47 |
| Msa0215830 | Msa0350990 | 0.812827 | 3.485418e-51 | -8.615850e-47 |
| Msa0215830 | Msa0351030 | 0.810817 | 9.547460e-51 | -8.615850e-47 |
| Msa0215830 | Msa0351100 | 0.808505 | 2.997122e-50 | -8.615850e-47 |
| Msa0215830 | Msa0355220 | 0.804168 | 2.459226e-49 | -8.615850e-47 |
| Msa0215830 | Msa0373930 | 0.809709 | 1.654775e-50 | -8.615850e-47 |
| Msa0215830 | Msa0402290 | 0.807198 | 5.682704e-50 | -8.615850e-47 |
| Msa0215830 | Msa0406880 | 0.824885 | 6.331965e-54 | -8.615850e-47 |
| Msa0215830 | Msa0414950 | -0.809827 | 1.560895e-50 | -8.615850e-47 |
| Msa0215830 | Msa0442850 | 0.805512 | 1.288220e-49 | -8.615850e-47 |
| Msa0215830 | Msa0459770 | -0.817361 | 3.432277e-52 | -8.615850e-47 |
| Msa0215830 | Msa0466390 | 0.804754 | 1.856145e-49 | -8.615850e-47 |
| Msa0215830 | Msa0467900 | -0.802593 | 5.213292e-49 | -8.615850e-47 |
| Msa0215830 | Msa0484780 | 0.801374 | 9.280837e-49 | -8.615850e-47 |
| Msa0215830 | Msa0500360 | 0.800156 | 1.644871e-48 | -8.615850e-47 |
| Msa0215830 | Msa0553220 | -0.824496 | 7.820494e-54 | -8.615850e-47 |
| Msa0215830 | Msa0562440 | 0.815356 | 9.639615e-52 | -8.615850e-47 |
| Msa0215830 | Msa0585000 | -0.814691 | 1.354278e-51 | -8.615850e-47 |
| Msa0215830 | Msa0585300 | 0.801753 | 7.760540e-49 | -8.615850e-47 |
| Msa0215830 | Msa0593650 | 0.808569 | 2.903432e-50 | -8.615850e-47 |
| Msa0215830 | Msa0602390 | 0.801243 | 9.870749e-49 | -8.615850e-47 |
| Msa0215830 | Msa0616160 | 0.817055 | 4.020923e-52 | -8.615850e-47 |
| Msa0215830 | Msa0621490 | 0.842494 | 2.499376e-58 | -8.615850e-47 |
| Msa0215830 | Msa0621590 | 0.833802 | 4.326025e-56 | -8.615850e-47 |
| Msa0215830 | Msa0638070 | 0.815084 | 1.108076e-51 | -8.615850e-47 |
| Msa0215830 | Msa0638280 | 0.802344 | 5.866074e-49 | -8.615850e-47 |
| Msa0215830 | Msa0638320 | 0.812492 | 4.126276e-51 | -8.615850e-47 |
| Msa0215830 | Msa0647450 | -0.816506 | 5.339653e-52 | -8.615850e-47 |
| Msa0215830 | Msa0657580 | 0.806659 | 7.388055e-50 | -8.615850e-47 |
| Msa0215830 | Msa0657970 | 0.801620 | 8.264421e-49 | -8.615850e-47 |
| Msa0215830 | Msa0661190 | -0.825995 | 3.457126e-54 | -8.615850e-47 |
| Msa0215830 | Msa0677270 | 0.800850 | 1.187761e-48 | -8.615850e-47 |
| Msa0215830 | Msa0689010 | 0.815354 | 9.649397e-52 | -8.615850e-47 |
| Msa0215830 | Msa0691380 | 0.811534 | 6.672151e-51 | -8.615850e-47 |
| Msa0215830 | Msa0693380 | 0.802668 | 5.029388e-49 | -8.615850e-47 |
| Msa0215830 | Msa0743260 | 0.808343 | 3.244475e-50 | -8.615850e-47 |
| Msa0215830 | Msa0743720 | 0.810705 | 1.009500e-50 | -8.615850e-47 |
| Msa0215830 | Msa0745790 | 0.811387 | 7.180588e-51 | -8.615850e-47 |
| Msa0215830 | Msa0773840 | 0.801696 | 7.972277e-49 | -8.615850e-47 |
| Msa0215830 | Msa0785740 | 0.800065 | 1.716613e-48 | -8.615850e-47 |
| Msa0215830 | Msa0790510 | 0.817404 | 3.356400e-52 | -8.615850e-47 |
| Msa0215830 | Msa0827040 | 0.810180 | 1.310346e-50 | -8.615850e-47 |
| Msa0215830 | Msa0844240 | 0.810051 | 1.397205e-50 | -8.615850e-47 |
| Msa0215830 | Msa0850960 | 0.803842 | 2.873754e-49 | -8.615850e-47 |
| Msa0215830 | Msa0880140 | 0.810695 | 1.014227e-50 | -8.615850e-47 |
| Msa0215830 | Msa0944190 | 0.803779 | 2.962526e-49 | -8.615850e-47 |
| Msa0215830 | Msa0947660 | 0.813568 | 2.396029e-51 | -8.615850e-47 |
| Msa0215830 | Msa0993290 | 0.829330 | 5.468586e-55 | -8.615850e-47 |
| Msa0215830 | Msa0993600 | 0.834618 | 2.701301e-56 | -8.615850e-47 |
| Msa0215830 | Msa1014540 | 0.800091 | 1.695684e-48 | -8.615850e-47 |
| Msa0215830 | Msa1034360 | 0.803539 | 3.322377e-49 | -8.615850e-47 |
| Msa0215830 | Msa1040120 | 0.800688 | 1.281908e-48 | -8.615850e-47 |
| Msa0215830 | Msa1075220 | -0.817945 | 2.533530e-52 | -8.615850e-47 |
| Msa0215830 | Msa1082500 | 0.809884 | 1.517524e-50 | -8.615850e-47 |
| Msa0215830 | Msa1097800 | 0.815120 | 1.087827e-51 | -8.615850e-47 |
| Msa0215830 | Msa1111110 | 0.810939 | 8.980561e-51 | -8.615850e-47 |
| Msa0215830 | Msa1116130 | -0.821763 | 3.396151e-53 | -8.615850e-47 |
| Msa0215830 | Msa1139000 | -0.804428 | 2.170772e-49 | -8.615850e-47 |
| Msa0215830 | Msa1162550 | -0.812716 | 3.685331e-51 | -8.615850e-47 |
| Msa0215830 | Msa1171870 | 0.805531 | 1.276094e-49 | -8.615850e-47 |
| Msa0215830 | Msa1199560 | 0.804454 | 2.143198e-49 | -8.615850e-47 |
| Msa0215830 | Msa1203250 | 0.842113 | 3.152128e-58 | -8.615850e-47 |
| Msa0215830 | Msa1205130 | 0.802376 | 5.778530e-49 | -8.615850e-47 |
| Msa0215830 | Msa1228210 | 0.807100 | 5.960284e-50 | -8.615850e-47 |
| Msa0215830 | Msa1233890 | 0.824684 | 7.062011e-54 | -8.615850e-47 |
| Msa0215830 | Msa1250890 | 0.833025 | 6.758400e-56 | -8.615850e-47 |
| Msa0215830 | Msa1264020 | 0.809427 | 1.902654e-50 | -8.615850e-47 |
| Msa0215830 | Msa1271210 | 0.806467 | 8.110912e-50 | -8.615850e-47 |
| Msa0215830 | Msa1271280 | 0.803837 | 2.880949e-49 | -8.615850e-47 |
| Msa0215830 | Msa1271300 | 0.810749 | 9.872479e-51 | -8.615850e-47 |
| Msa0215830 | Msa1291660 | 0.808302 | 3.310186e-50 | -8.615850e-47 |
| Msa0215830 | Msa1296880 | 0.805043 | 1.614814e-49 | -8.615850e-47 |
| Msa0215830 | Msa1327050 | 0.801961 | 7.032951e-49 | -8.615850e-47 |
| Msa0215830 | Msa1340650 | 0.828967 | 6.696174e-55 | -8.615850e-47 |
| Msa0215830 | Msa1351620 | 0.807486 | 4.938202e-50 | -8.615850e-47 |
| Msa0215830 | Msa1357530 | 0.809764 | 1.610694e-50 | -8.615850e-47 |
| Msa0215830 | Msa1362880 | 0.824931 | 6.177347e-54 | -8.615850e-47 |
| Msa0215830 | Msa1369530 | 0.810351 | 1.203643e-50 | -8.615850e-47 |
| Msa0215830 | Msa1371430 | 0.803484 | 3.411085e-49 | -8.615850e-47 |
| Msa0215830 | Msa1390050 | 0.814843 | 1.253038e-51 | -8.615850e-47 |
| Msa0215830 | Msa1392260 | 0.803792 | 2.943141e-49 | -8.615850e-47 |
| Msa0215830 | Msa1426030 | 0.810604 | 1.061055e-50 | -8.615850e-47 |
| Msa0215830 | Msa1430680 | 0.800660 | 1.298675e-48 | -8.615850e-47 |
| Msa0215830 | Msa1440000 | 0.800631 | 1.316654e-48 | -8.615850e-47 |
| Msa0215830 | Msa1445100 | 0.809152 | 2.178885e-50 | -8.615850e-47 |
| Msa0215830 | Msa1449250 | -0.802078 | 6.655076e-49 | -8.615850e-47 |
| Msa0215830 | Msa1452240 | 0.804543 | 2.053513e-49 | -8.615850e-47 |
| Msa0215830 | Msa1453780 | -0.825524 | 4.473579e-54 | -8.615850e-47 |
| Msa0215830 | Msa1455490 | 0.804872 | 1.753637e-49 | -8.615850e-47 |
| Msa0215830 | Msa1464830 | 0.800253 | 1.571815e-48 | -8.615850e-47 |
| Msa0215830 | Msa1466300 | 0.820395 | 7.016217e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215830 | MtrunA17_Chr5g0399351 | 61.929 | 197 | 48 | 4 | 10 | 179 | 109 | 305 | 2.88e-65 | 204 |
| Msa0215830 | MtrunA17_Chr2g0317181 | 79.208 | 101 | 19 | 1 | 91 | 191 | 1 | 99 | 2.29e-45 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0215830 | AT5G05210.1 | 45.588 | 204 | 79 | 6 | 1 | 179 | 144 | 340 | 9.77e-41 | 142 |
| Msa0215830 | AT5G05210.2 | 45.588 | 204 | 79 | 6 | 1 | 179 | 136 | 332 | 1.13e-40 | 142 |
| Msa0215830 | AT2G27750.1 | 45.946 | 111 | 54 | 3 | 74 | 179 | 39 | 148 | 4.79e-20 | 83.2 |
Find 46 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGAAGCTATTGCTAAAA+AGG | 0.287342 | 2_1:-61367192 | Msa0215830:CDS |
| ATACTTCTCTTTATCAGTTT+AGG | 0.301257 | 2_1:+61367116 | Msa0215820:intron |
| TGAAAGAAAGATAGAGTTTC+CGG | 0.308185 | 2_1:-61367378 | Msa0215830:CDS |
| AGGTCCTAACTGTGCAAATC+TGG | 0.341251 | 2_1:-61367420 | Msa0215830:CDS |
| ATCGCAAACTTGAAGAGTTT+CGG | 0.345780 | 2_1:-61367445 | Msa0215830:CDS |
| GCGGTTAAGCCTTTCATGTC+GGG | 0.372922 | 2_1:-61367521 | Msa0215830:CDS |
| AGCAGAAAATCGCAGTGAAA+TGG | 0.374864 | 2_1:-61367073 | Msa0215830:CDS |
| TGAAAGAGCTAAGAAGTTAG+AGG | 0.400614 | 2_1:-61367240 | Msa0215830:CDS |
| GTATACAGAAATGGAAGAAT+AGG | 0.408150 | 2_1:-61367097 | Msa0215830:CDS |
| GCAATAGCTTCACCCTTCTC+AGG | 0.419537 | 2_1:+61367200 | Msa0215820:intron |
| AGCAGCAATGAATAGAGCTT+CGG | 0.425070 | 2_1:-61367159 | Msa0215830:CDS |
| GCAGCAATGAATAGAGCTTC+GGG | 0.426903 | 2_1:-61367158 | Msa0215830:CDS |
| TCTTTAAAAGAGCTTGTGTT+TGG | 0.437000 | 2_1:-61367326 | Msa0215830:CDS |
| TCCTTTACCACCTTCTCCTC+CGG | 0.440386 | 2_1:+61367359 | Msa0215820:intron |
| ATCTGGAAAATGCTAATAAG+AGG | 0.444036 | 2_1:-61367403 | Msa0215830:CDS |
| TAAAGAGAAGTATACAGAAA+TGG | 0.461758 | 2_1:-61367106 | Msa0215830:CDS |
| GCAGAAAATCGCAGTGAAAT+GGG | 0.472714 | 2_1:-61367072 | Msa0215830:CDS |
| TCTTTCAAGTTCCTTGTGCT+TGG | 0.476271 | 2_1:+61367256 | Msa0215820:intron |
| GGCAATGTTAAACTTCAGAA+TGG | 0.487362 | 2_1:-61367305 | Msa0215830:CDS |
| GATAGAGTTTCCGGAGGAGA+AGG | 0.496889 | 2_1:-61367369 | Msa0215830:CDS |
| GAATAGAGCTTCGGGAATCA+AGG | 0.497557 | 2_1:-61367150 | Msa0215830:CDS |
| TGCGGTTAAGCCTTTCATGT+CGG | 0.509135 | 2_1:-61367522 | Msa0215830:CDS |
| TCCGGAGGAGAAGGTGGTAA+AGG | 0.513098 | 2_1:-61367360 | Msa0215830:CDS |
| AAACTTGAAGAGTTTCGGTC+AGG | 0.519958 | 2_1:-61367440 | Msa0215830:CDS |
| TAAGCCTTTCATGTCGGGGT+TGG | 0.521349 | 2_1:-61367516 | Msa0215830:CDS |
| TCAAACAAAGGATCAGTTGA+AGG | 0.525525 | 2_1:-61367032 | Msa0215830:CDS |
| CGCAGTGAAATGGGAAGAGA+GGG | 0.547718 | 2_1:-61367063 | Msa0215830:CDS |
| CCTTTCGTGTAGTTCTTCAA+AGG | 0.548079 | 2_1:+61367472 | Msa0215820:intron |
| GCTTCCAACCCCGACATGAA+AGG | 0.556004 | 2_1:+61367512 | Msa0215820:intron |
| CGGGGTTGGAAGCAGATGAT+CGG | 0.561569 | 2_1:-61367502 | Msa0215830:CDS |
| CTTCAGAATGGTGAAATGCA+AGG | 0.562609 | 2_1:-61367293 | Msa0215830:CDS |
| TTCAGAATGGTGAAATGCAA+GGG | 0.568164 | 2_1:-61367292 | Msa0215830:CDS |
| AGAGTTTCCGGAGGAGAAGG+TGG | 0.570130 | 2_1:-61367366 | Msa0215830:CDS |
| AATGACAGCGATGGAGAGGA+AGG | 0.580649 | 2_1:-61367545 | Msa0215830:CDS |
| CGGTTAAGCCTTTCATGTCG+GGG | 0.581496 | 2_1:-61367520 | Msa0215830:CDS |
| AATGAATGACAGCGATGGAG+AGG | 0.585376 | 2_1:-61367549 | Msa0215830:CDS |
| GAAGAAGAATGATCCTGAGA+AGG | 0.589096 | 2_1:-61367213 | Msa0215830:CDS |
| AAGAAGAATGATCCTGAGAA+GGG | 0.591026 | 2_1:-61367212 | Msa0215830:CDS |
| TCTGGAAAATGCTAATAAGA+GGG | 0.594774 | 2_1:-61367402 | Msa0215830:CDS |
| TCGCAGTGAAATGGGAAGAG+AGG | 0.597560 | 2_1:-61367064 | Msa0215830:CDS |
| AGGGTTCAAAGTTCAAACAA+AGG | 0.644899 | 2_1:-61367044 | Msa0215830:CDS |
| GAGAAAAGTTTCCAAGCACA+AGG | 0.645702 | 2_1:-61367267 | Msa0215830:CDS |
| GGAGGAGAAGGTGGTAAAGG+AGG | 0.646856 | 2_1:-61367357 | Msa0215830:CDS |
| AAGAAAGATAGAGTTTCCGG+AGG | 0.655190 | 2_1:-61367375 | Msa0215830:CDS |
| CCTTTGAAGAACTACACGAA+AGG | 0.661334 | 2_1:-61367472 | Msa0215830:CDS |
| CAGCGATGGAGAGGAAGGTG+CGG | 0.700646 | 2_1:-61367540 | Msa0215830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATACTTCTCTTTATCAGTTT+AGG | + | chr2_1:61367430-61367449 | Msa0215820:intron | 25.0% |
| !! | TAAAGAGAAGTATACAGAAA+TGG | - | chr2_1:61367437-61367456 | Msa0215830:CDS | 25.0% |
| ATCTGGAAAATGCTAATAAG+AGG | - | chr2_1:61367140-61367159 | Msa0215830:CDS | 30.0% | |
| TCTGGAAAATGCTAATAAGA+GGG | - | chr2_1:61367141-61367160 | Msa0215830:CDS | 30.0% | |
| TGAAAGAAAGATAGAGTTTC+CGG | - | chr2_1:61367165-61367184 | Msa0215830:CDS | 30.0% | |
| ! | TCTTTAAAAGAGCTTGTGTT+TGG | - | chr2_1:61367217-61367236 | Msa0215830:CDS | 30.0% |
| GTATACAGAAATGGAAGAAT+AGG | - | chr2_1:61367446-61367465 | Msa0215830:CDS | 30.0% | |
| ATCGCAAACTTGAAGAGTTT+CGG | - | chr2_1:61367098-61367117 | Msa0215830:CDS | 35.0% | |
| ! | TTTTCCAGATTTGCACAGTT+AGG | + | chr2_1:61367130-61367149 | Msa0215820:intron | 35.0% |
| !! | AAGCTCTTTTAAAGACTCTG+TGG | + | chr2_1:61367212-61367231 | Msa0215820:intron | 35.0% |
| GGCAATGTTAAACTTCAGAA+TGG | - | chr2_1:61367238-61367257 | Msa0215830:CDS | 35.0% | |
| TTCAGAATGGTGAAATGCAA+GGG | - | chr2_1:61367251-61367270 | Msa0215830:CDS | 35.0% | |
| TGAAAGAGCTAAGAAGTTAG+AGG | - | chr2_1:61367303-61367322 | Msa0215830:CDS | 35.0% | |
| AAGAAGAATGATCCTGAGAA+GGG | - | chr2_1:61367331-61367350 | Msa0215830:CDS | 35.0% | |
| CTATTGCTAAAAAGGAAGCA+TGG | - | chr2_1:61367359-61367378 | Msa0215830:CDS | 35.0% | |
| AGGGTTCAAAGTTCAAACAA+AGG | - | chr2_1:61367499-61367518 | Msa0215830:CDS | 35.0% | |
| TCAAACAAAGGATCAGTTGA+AGG | - | chr2_1:61367511-61367530 | Msa0215830:CDS | 35.0% | |
| AGGCAGAGAAACAACAAAAA+AGG | - | chr2_1:61367531-61367550 | Msa0215830:CDS | 35.0% | |
| CCTTTCGTGTAGTTCTTCAA+AGG | + | chr2_1:61367074-61367093 | Msa0215820:intron | 40.0% | |
| ! | CCTTTGAAGAACTACACGAA+AGG | - | chr2_1:61367071-61367090 | Msa0215830:CDS | 40.0% |
| AAACTTGAAGAGTTTCGGTC+AGG | - | chr2_1:61367103-61367122 | Msa0215830:CDS | 40.0% | |
| AAGAAAGATAGAGTTTCCGG+AGG | - | chr2_1:61367168-61367187 | Msa0215830:CDS | 40.0% | |
| CTTCAGAATGGTGAAATGCA+AGG | - | chr2_1:61367250-61367269 | Msa0215830:CDS | 40.0% | |
| GAGAAAAGTTTCCAAGCACA+AGG | - | chr2_1:61367276-61367295 | Msa0215830:CDS | 40.0% | |
| !! | TCTTTCAAGTTCCTTGTGCT+TGG | + | chr2_1:61367290-61367309 | Msa0215820:intron | 40.0% |
| GAAGAAGAATGATCCTGAGA+AGG | - | chr2_1:61367330-61367349 | Msa0215830:CDS | 40.0% | |
| GGGTGAAGCTATTGCTAAAA+AGG | - | chr2_1:61367351-61367370 | Msa0215830:CDS | 40.0% | |
| AGCAGCAATGAATAGAGCTT+CGG | - | chr2_1:61367384-61367403 | Msa0215830:CDS | 40.0% | |
| AGCAGAAAATCGCAGTGAAA+TGG | - | chr2_1:61367470-61367489 | Msa0215830:CDS | 40.0% | |
| GCAGAAAATCGCAGTGAAAT+GGG | - | chr2_1:61367471-61367490 | Msa0215830:CDS | 40.0% | |
| TGCGGTTAAGCCTTTCATGT+CGG | - | chr2_1:61367021-61367040 | Msa0215830:CDS | 45.0% | |
| AGGTCCTAACTGTGCAAATC+TGG | - | chr2_1:61367123-61367142 | Msa0215830:CDS | 45.0% | |
| GCAGCAATGAATAGAGCTTC+GGG | - | chr2_1:61367385-61367404 | Msa0215830:CDS | 45.0% | |
| GAATAGAGCTTCGGGAATCA+AGG | - | chr2_1:61367393-61367412 | Msa0215830:CDS | 45.0% | |
| AATGACAGCGATGGAGAGGA+AGG | - | chr2_1:61366998-61367017 | Msa0215830:CDS | 50.0% | |
| GCGGTTAAGCCTTTCATGTC+GGG | - | chr2_1:61367022-61367041 | Msa0215830:CDS | 50.0% | |
| CGGTTAAGCCTTTCATGTCG+GGG | - | chr2_1:61367023-61367042 | Msa0215830:CDS | 50.0% | |
| TAAGCCTTTCATGTCGGGGT+TGG | - | chr2_1:61367027-61367046 | Msa0215830:CDS | 50.0% | |
| GATAGAGTTTCCGGAGGAGA+AGG | - | chr2_1:61367174-61367193 | Msa0215830:CDS | 50.0% | |
| TCCTTTACCACCTTCTCCTC+CGG | + | chr2_1:61367187-61367206 | Msa0215820:intron | 50.0% | |
| GCAATAGCTTCACCCTTCTC+AGG | + | chr2_1:61367346-61367365 | Msa0215820:intron | 50.0% | |
| TCGCAGTGAAATGGGAAGAG+AGG | - | chr2_1:61367479-61367498 | Msa0215830:CDS | 50.0% | |
| CGCAGTGAAATGGGAAGAGA+GGG | - | chr2_1:61367480-61367499 | Msa0215830:CDS | 50.0% | |
| GCTTCCAACCCCGACATGAA+AGG | + | chr2_1:61367034-61367053 | Msa0215820:intron | 55.0% | |
| CGGGGTTGGAAGCAGATGAT+CGG | - | chr2_1:61367041-61367060 | Msa0215830:CDS | 55.0% | |
| AGAGTTTCCGGAGGAGAAGG+TGG | - | chr2_1:61367177-61367196 | Msa0215830:CDS | 55.0% | |
| TCCGGAGGAGAAGGTGGTAA+AGG | - | chr2_1:61367183-61367202 | Msa0215830:CDS | 55.0% | |
| GGAGGAGAAGGTGGTAAAGG+AGG | - | chr2_1:61367186-61367205 | Msa0215830:CDS | 55.0% | |
| CAGCGATGGAGAGGAAGGTG+CGG | - | chr2_1:61367003-61367022 | Msa0215830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 61366995 | 61367570 | 61366995 | ID=Msa0215830;Name=Msa0215830 |
| chr2_1 | mRNA | 61366995 | 61367570 | 61366995 | ID=Msa0215830-mRNA-1;Parent=Msa0215830;Name=Msa0215830-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|191 |
| chr2_1 | exon | 61366995 | 61367570 | 61366995 | ID=Msa0215830-mRNA-1:exon:16937;Parent=Msa0215830-mRNA-1 |
| chr2_1 | CDS | 61366995 | 61367570 | 61366995 | ID=Msa0215830-mRNA-1:cds;Parent=Msa0215830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
