AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0241720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241720 MtrunA17_Chr2g0293441 95.502 289 13 0 283 571 25 313 0.0 574
Msa0241720 MtrunA17_Chr2g0293451 96.078 204 5 2 17 218 11 213 1.51e-132 388
Msa0241720 MtrunA17_Chr8g0352621 46.795 312 162 1 264 571 1 312 4.20e-100 306
Msa0241720 MtrunA17_Chr3g0083901 47.751 289 151 0 281 569 23 311 2.86e-99 303
Msa0241720 MtrunA17_Chr5g0425971 47.619 294 154 0 277 570 20 313 8.41e-98 300
Msa0241720 MtrunA17_Chr3g0083921 47.059 289 153 0 283 571 25 313 2.63e-92 286
Msa0241720 MtrunA17_Chr8g0352611 44.932 296 162 1 276 571 18 312 3.29e-87 273
Msa0241720 MtrunA17_Chr8g0352591 45.392 293 149 1 277 569 19 300 1.89e-86 270
Msa0241720 MtrunA17_Chr8g0382281 43.643 291 164 0 281 571 24 314 7.76e-81 256
Msa0241720 MtrunA17_Chr8g0352571 37.329 292 180 1 281 569 24 315 1.25e-60 203
Msa0241720 MtrunA17_Chr8g0393281 35.135 296 190 2 275 569 18 312 7.23e-60 201
Msa0241720 MtrunA17_Chr6g0479411 35.135 296 190 2 275 569 45 339 4.39e-59 200
Msa0241720 MtrunA17_Chr6g0479421 35.473 296 189 2 275 569 18 312 3.58e-57 194
Msa0241720 MtrunA17_Chr8g0352581 37.618 319 174 6 268 569 1 311 1.05e-55 190
Msa0241720 MtrunA17_Chr1g0210981 34.122 296 193 2 275 569 18 312 4.86e-54 186
Msa0241720 MtrunA17_Chr1g0162071 33.108 296 196 2 277 571 20 314 1.14e-53 185
Msa0241720 MtrunA17_Chr6g0479391 33.784 296 194 2 275 569 18 312 2.02e-51 179
Msa0241720 MtrunA17_Chr6g0461141 26.277 274 194 4 302 567 34 307 1.10e-24 105
Msa0241720 MtrunA17_Chr3g0084021 44.118 68 38 0 402 469 5 72 1.12e-14 69.3
Msa0241720 MtrunA17_Chr3g0084011 55.102 49 22 0 283 331 25 73 3.28e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0241720 AT5G12380.1 59.028 288 118 0 283 570 25 312 1.76e-120 358
Msa0241720 AT5G10230.1 46.441 295 158 0 277 571 20 314 1.64e-92 286
Msa0241720 AT5G10220.1 47.138 297 155 1 277 571 20 316 5.12e-92 285
Msa0241720 AT1G35720.1 45.205 292 159 1 281 571 24 315 2.94e-89 278
Msa0241720 AT5G65020.1 43.345 293 165 1 279 570 22 314 2.00e-84 266
Msa0241720 AT4G20760.1 76.331 169 40 0 50 218 44 212 3.95e-84 264
Msa0241720 AT4G20760.2 76.331 169 40 0 50 218 64 232 9.45e-84 264
Msa0241720 AT5G65020.2 43.253 289 163 1 283 570 11 299 3.78e-83 262
Msa0241720 AT2G38760.1 41.017 295 168 2 283 571 26 320 1.10e-69 228
Msa0241720 AT1G68090.1 32.154 311 207 2 263 569 3 313 1.64e-54 187
Msa0241720 AT2G38750.1 35.082 305 173 6 282 568 18 315 1.83e-50 177
Msa0241720 AT2G38750.2 35.082 305 173 6 282 568 1 298 2.42e-50 176
Msa0241720 AT1G68090.2 31.452 248 166 2 263 506 3 250 4.01e-40 147

Find 111 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTTTCAATATCTTTA+AGG 0.055725 2_2:-17629113 Msa0241720:CDS
GTATTTCTGTCTTTGTTTCT+TGG 0.183447 2_2:-17634603 Msa0241720:five_prime_UTR
AAGTCATCTTACCTTATTAA+TGG 0.196321 2_2:+17629075 None:intergenic
TTCAATCAATTGATGAAGTA+TGG 0.245555 2_2:+17629201 None:intergenic
TTACCTTGGCCAAGTATCTT+TGG 0.262025 2_2:+17628849 None:intergenic
TAATGATGTGCAACAACTTT+TGG 0.278163 2_2:+17631677 None:intergenic
CAGATTACCAAGGAATTTCT+TGG 0.283940 2_2:+17631608 None:intergenic
AGAAACCACATTGAACAAAT+TGG 0.288395 2_2:-17632544 Msa0241720:CDS
TTACCTGGTTGCAGCACTTC+AGG 0.309608 2_2:+17632851 None:intergenic
CAGCTCAAAACTGAACTTTC+AGG 0.310428 2_2:-17629791 Msa0241720:CDS
TTTCAATTGTAGGGATTATC+AGG 0.320601 2_2:-17628932 Msa0241720:intron
TAGAAATACTGAAGAGCTTC+TGG 0.326830 2_2:-17629497 Msa0241720:CDS
ATCTTTAATGCTTTCTTATG+AGG 0.347301 2_2:-17632514 Msa0241720:CDS
GTATGGCACAACCATTAATA+AGG 0.354944 2_2:-17629086 Msa0241720:intron
TGAAGAAGAGAATGCTCTTC+TGG 0.356280 2_2:+17634457 None:intergenic
TCAATAATCACTTTGTAATC+TGG 0.360081 2_2:+17629532 None:intergenic
AATATCTTTAAGGACTTGTA+TGG 0.373979 2_2:-17629103 Msa0241720:CDS
CAGTTGATGCATTAGGATTA+CGG 0.378721 2_2:+17634085 None:intergenic
AGTGCAAGGGTTGCATCTAT+TGG 0.379178 2_2:-17632221 Msa0241720:CDS
CATTAATGAGAAGGTTTAGA+TGG 0.381244 2_2:+17632894 None:intergenic
CGTAATCCTAATGCATCAAC+TGG 0.384959 2_2:-17634084 Msa0241720:CDS
AACTGGGCTTCTTCATTTGA+AGG 0.387513 2_2:-17634067 Msa0241720:CDS
CTTAAAGCTGGAGGTGGCAT+TGG 0.391361 2_2:-17632278 Msa0241720:CDS
GCTCCAATGTATTCATCAAT+TGG 0.396159 2_2:+17628905 None:intergenic
ATTCATTTCCCAACAATTCA+AGG 0.397289 2_2:+17628548 None:intergenic
AACCTTCTCATTAATGCATC+TGG 0.398628 2_2:-17632887 Msa0241720:CDS
TTCATTTGCCAGATCATTCA+AGG 0.399618 2_2:+17628711 None:intergenic
AGAAGCCCAGTTGATGCATT+AGG 0.400206 2_2:+17634078 None:intergenic
GAGAGGCAACATCTTCTTCA+AGG 0.414127 2_2:+17629437 None:intergenic
TCATCATCTTCTCAAGCTAA+TGG 0.425069 2_2:-17634434 Msa0241720:CDS
ATCCATTGTCCAATGACTAA+TGG 0.425161 2_2:+17629606 None:intergenic
TGCAATAGAATACATATGAT+TGG 0.426249 2_2:+17631784 None:intergenic
CGATGACAGCCAAAGATACT+TGG 0.427900 2_2:-17628858 Msa0241720:CDS
TAATGCCGTCGGTCCTATCT+TGG 0.436507 2_2:-17632490 Msa0241720:CDS
CAATGGCAAGTTCTTTGCTT+GGG 0.439897 2_2:-17631635 Msa0241720:CDS
AATGGTGTTTCCTTAGTTCA+AGG 0.447999 2_2:-17634416 Msa0241720:CDS
TTAAAGCTGGAGGTGGCATT+GGG 0.448490 2_2:-17632277 Msa0241720:CDS
TTCATTTCGGTGTGCTAGTA+CGG 0.451418 2_2:+17629874 None:intergenic
TTGTGGCTAGTTTGAGTGCA+AGG 0.455555 2_2:-17632235 Msa0241720:CDS
TCTGGAAGCTCCTTGAACTA+AGG 0.459833 2_2:+17634406 None:intergenic
TTATCAAGAAATTTATCATC+AGG 0.460775 2_2:-17629825 Msa0241720:CDS
TGAACTTTCAGGAAACTTTG+AGG 0.461813 2_2:-17629780 Msa0241720:intron
CTATTGGCGATAATCGTCTC+GGG 0.464427 2_2:-17632205 Msa0241720:CDS
ATCTCACGCCTTGAATGATC+TGG 0.465214 2_2:-17628719 Msa0241720:CDS
GGCAAGTTCTTTGCTTGGGA+TGG 0.466937 2_2:-17631631 Msa0241720:CDS
TCAAAGAAAACTTGTGAGGC+TGG 0.474305 2_2:-17629849 Msa0241720:CDS
GTTACCTTGATAACCAAGAT+AGG 0.479512 2_2:+17632477 None:intergenic
CGGTCCTATCTTGGTTATCA+AGG 0.479719 2_2:-17632481 Msa0241720:intron
CAAGGAGCTTCCAGAGGAAT+CGG 0.479788 2_2:-17634398 Msa0241720:CDS
ACAATGGCAAGTTCTTTGCT+TGG 0.481131 2_2:-17631636 Msa0241720:CDS
TCGTGCAGAGAAGGACTTGA+AGG 0.481757 2_2:-17628659 Msa0241720:CDS
GACTGTTGAAAGTTCTATTG+AGG 0.482023 2_2:-17634004 Msa0241720:intron
ATCAGAGAGCCATTAGTCAT+TGG 0.483585 2_2:-17629615 Msa0241720:intron
ATGTGGCCTCTTCTTAAAGC+TGG 0.492856 2_2:-17632290 Msa0241720:CDS
GAATTCAAGACCGATTCCTC+TGG 0.498734 2_2:+17634388 None:intergenic
AGTGTAGCATCTCTTTCAGC+TGG 0.500813 2_2:+17629583 None:intergenic
TATTAATGAGGCACTAAAGA+AGG 0.504365 2_2:-17629560 Msa0241720:CDS
CCATGGCTTCACGTTCCCCT+CGG 0.507270 2_2:-17634493 Msa0241720:CDS
GGGATGGCCAAGAAATTCCT+TGG 0.510368 2_2:-17631615 Msa0241720:intron
AGATCTGTGTCAACTGTACC+AGG 0.510748 2_2:+17631760 None:intergenic
GGCAATGCTTGTAAAGAGAA+TGG 0.512438 2_2:+17629458 None:intergenic
TTGTCAATAAAAGAGACATA+TGG 0.523455 2_2:-17632917 Msa0241720:CDS
CTTCTCCAATTTGTTCAATG+TGG 0.532375 2_2:+17632539 None:intergenic
CCATTCATGATTCTGTTGCT+AGG 0.535196 2_2:-17628600 Msa0241720:CDS
GATGTTGCCTCTCAAACTAC+TGG 0.536143 2_2:-17629427 Msa0241720:CDS
GGAAAGAAGTGGTGCAGTTG+TGG 0.541874 2_2:-17632252 Msa0241720:CDS
CCGAGGGGAACGTGAAGCCA+TGG 0.545507 2_2:+17634493 None:intergenic
ATTCTGTTGCTAGGAAGACA+TGG 0.545887 2_2:-17628591 Msa0241720:CDS
TCTATTGGCGATAATCGTCT+CGG 0.545892 2_2:-17632206 Msa0241720:CDS
TGCCAGATGCATTAATGAGA+AGG 0.549104 2_2:+17632885 None:intergenic
CCCCACTCATAACACTTCCA+TGG 0.559867 2_2:-17634510 Msa0241720:CDS
TGTGGCTAGTTTGAGTGCAA+GGG 0.561568 2_2:-17632234 Msa0241720:CDS
CCTCTTCTTAAAGCTGGAGG+TGG 0.561667 2_2:-17632284 Msa0241720:CDS
CCTAGCAACAGAATCATGAA+TGG 0.562607 2_2:+17628600 None:intergenic
AGTCCAATTGATGAATACAT+TGG 0.565821 2_2:-17628908 Msa0241720:CDS
TCTTATGAGGTTAATGCCGT+CGG 0.566525 2_2:-17632501 Msa0241720:CDS
CCACCTCCAGCTTTAAGAAG+AGG 0.569003 2_2:+17632284 None:intergenic
TATTGTCACTCGTGCAGAGA+AGG 0.570093 2_2:-17628668 Msa0241720:CDS
AGCTGGAGGTGGCATTGGGA+CGG 0.573880 2_2:-17632273 Msa0241720:CDS
ATATGTATTCTATTGCATCC+TGG 0.575422 2_2:-17631778 Msa0241720:CDS
GCCATGGAAGTGTTATGAGT+GGG 0.585439 2_2:+17634509 None:intergenic
TGGCCTCTTCTTAAAGCTGG+AGG 0.586099 2_2:-17632287 Msa0241720:CDS
TGGCTAGTGATAGAAGCCGA+GGG 0.589776 2_2:+17634477 None:intergenic
CAAAGAACTTGCCATTGTCA+TGG 0.596876 2_2:+17631641 None:intergenic
AGATGCTACACTTATTAATG+AGG 0.597858 2_2:-17629572 Msa0241720:CDS
GCTGTCATCGATGCATCGAA+CGG 0.601285 2_2:+17628871 None:intergenic
CTGGCTAGTGATAGAAGCCG+AGG 0.605793 2_2:+17634476 None:intergenic
ATACCTGAAGTGCTGCAACC+AGG 0.607063 2_2:-17632854 Msa0241720:intron
TATTGGCGATAATCGTCTCG+GGG 0.615665 2_2:-17632204 Msa0241720:CDS
TTCTGTTGCTAGGAAGACAT+GGG 0.615900 2_2:-17628590 Msa0241720:CDS
AATTTCTAAATCAGCACATG+TGG 0.616873 2_2:-17632307 Msa0241720:intron
AATATCACCAGTAGTTTGAG+AGG 0.620279 2_2:+17629420 None:intergenic
CATGGAAGTGTTATGAGTGG+GGG 0.623448 2_2:+17634511 None:intergenic
GGCATTGGGACGGAAAGAAG+TGG 0.627744 2_2:-17632263 Msa0241720:CDS
CCATGGAAGTGTTATGAGTG+GGG 0.629223 2_2:+17634510 None:intergenic
CTTTCAACAGTCAAATCCAA+AGG 0.633353 2_2:+17634015 None:intergenic
TTAGTTCAAGGAGCTTCCAG+AGG 0.637415 2_2:-17634404 Msa0241720:CDS
CAGCCAAAGATACTTGGCCA+AGG 0.646550 2_2:-17628852 Msa0241720:intron
AAGCTCAAAGAAAACTTGTG+AGG 0.650998 2_2:-17629853 Msa0241720:CDS
AGCCATTAGTCATTGGACAA+TGG 0.653584 2_2:-17629608 Msa0241720:CDS
AATGTCAAGAGCCATGACAA+TGG 0.667426 2_2:-17631652 Msa0241720:CDS
AGAGAAAAGAACATGAAGCG+TGG 0.679057 2_2:+17634569 None:intergenic
ATGGAAGTGTTATGAGTGGG+GGG 0.679177 2_2:+17634512 None:intergenic
GATAACCAAGATAGGACCGA+CGG 0.679582 2_2:+17632485 None:intergenic
AGATGAGTTTGATGAGAATG+TGG 0.686942 2_2:-17629239 Msa0241720:CDS
GTAATCCTAATGCATCAACT+GGG 0.689940 2_2:-17634083 Msa0241720:CDS
ATAAGCACTTACAAGTACGA+TGG 0.694159 2_2:-17629262 Msa0241720:CDS
ATTGGCGATAATCGTCTCGG+GGG 0.707865 2_2:-17632203 Msa0241720:CDS
TCTGTTGCTAGGAAGACATG+GGG 0.714554 2_2:-17628589 Msa0241720:CDS
GGCTAGTGATAGAAGCCGAG+GGG 0.717127 2_2:+17634478 None:intergenic
AGCCATGGAAGTGTTATGAG+TGG 0.728190 2_2:+17634508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATGAAAAAAATATTT+TGG + chr2_2:17629597-17629616 None:intergenic 10.0%
!! TGTATTTATTATAATATTTC+AGG - chr2_2:17630212-17630231 Msa0241720:intron 10.0%
!!! ATAATTTTAGAAGTAAAATT+GGG - chr2_2:17630756-17630775 Msa0241720:intron 10.0%
!! ATATTTATTTATTAGTGATA+TGG - chr2_2:17631959-17631978 Msa0241720:intron 10.0%
!! ATTTCCAAAAAAAAAAAAAA+TGG + chr2_2:17632612-17632631 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGGAAATT+AGG - chr2_2:17632613-17632632 Msa0241720:intron 10.0%
!! AGTTATTATTATATTGAAAA+GGG - chr2_2:17632780-17632799 Msa0241720:intron 10.0%
!!! ATGAAGAAAAGTAATTTTTT+TGG + chr2_2:17628859-17628878 None:intergenic 15.0%
!!! AAAAAAATTACTTTTCTTCA+TGG - chr2_2:17628858-17628877 Msa0241720:CDS 15.0%
!!! AAAAAATTACTTTTCTTCAT+GGG - chr2_2:17628859-17628878 Msa0241720:CDS 15.0%
!!! TTTAGCTAATATTTAACTTT+AGG - chr2_2:17629334-17629353 Msa0241720:intron 15.0%
!! TTTATTTGTTTATCTATTTG+TGG - chr2_2:17630733-17630752 Msa0241720:intron 15.0%
!!! GATAATTTTAGAAGTAAAAT+TGG - chr2_2:17630755-17630774 Msa0241720:intron 15.0%
!! AAAACAACTTATAGATTATA+TGG - chr2_2:17631211-17631230 Msa0241720:intron 15.0%
!!! TTAGCAATATTTTTTTGAAA+TGG + chr2_2:17631433-17631452 None:intergenic 15.0%
!!! TAAAAACATTGATTATTAGT+CGG - chr2_2:17632046-17632065 Msa0241720:intron 15.0%
!! CAGTTATTATTATATTGAAA+AGG - chr2_2:17632779-17632798 Msa0241720:intron 15.0%
!! AAAAAACGTATTTAGTTATT+AGG - chr2_2:17632878-17632897 Msa0241720:CDS 15.0%
!!! TTAGTTATTAGGAATATTTT+AGG - chr2_2:17632889-17632908 Msa0241720:CDS 15.0%
!! AAAAATTATCAAATAGAGAA+TGG + chr2_2:17634364-17634383 None:intergenic 15.0%
!! TATGTTTAGTAAAAACTATA+GGG + chr2_2:17634390-17634409 None:intergenic 15.0%
!! ATATGTTTAGTAAAAACTAT+AGG + chr2_2:17634391-17634410 None:intergenic 15.0%
!!! AAAGAAAAACATTGTTTTCA+AGG + chr2_2:17628813-17628832 None:intergenic 20.0%
!!! AAAAATTACTTTTCTTCATG+GGG - chr2_2:17628860-17628879 Msa0241720:CDS 20.0%
!!! TTTTATCTGTTTTTTAGTCT+AGG - chr2_2:17628891-17628910 Msa0241720:CDS 20.0%
!!! TTGTGTTTTGTATTGTATAT+AGG - chr2_2:17629003-17629022 Msa0241720:intron 20.0%
!! TTATATCCTCAAATAATCTT+TGG - chr2_2:17629460-17629479 Msa0241720:CDS 20.0%
!!! ATGAAAAAAATATTTTGGCA+AGG + chr2_2:17629592-17629611 None:intergenic 20.0%
!!! TATTTTGATACAACTAAGAA+TGG + chr2_2:17629729-17629748 None:intergenic 20.0%
!! ATTCTTAGTTGTATCAAAAT+AGG - chr2_2:17629728-17629747 Msa0241720:intron 20.0%
!! TTCTTAGTTGTATCAAAATA+GGG - chr2_2:17629729-17629748 Msa0241720:intron 20.0%
!!! TTAACAAATGAATAGGTTTT+TGG + chr2_2:17630186-17630205 None:intergenic 20.0%
!!! TAAAGATTTGTTTCATTCTT+TGG - chr2_2:17630329-17630348 Msa0241720:intron 20.0%
!! CTAAAAACAGAATAATCAAA+AGG - chr2_2:17630410-17630429 Msa0241720:intron 20.0%
!! CTTATCATATTGAATATAAC+AGG + chr2_2:17631051-17631070 None:intergenic 20.0%
!! AAGCACTTATAGAATTATTT+GGG - chr2_2:17631119-17631138 Msa0241720:intron 20.0%
!!! ATATTATAAGCTATTTCCAT+AGG + chr2_2:17631149-17631168 None:intergenic 20.0%
!! ATATGATAAACTGTTTGAAA+TGG - chr2_2:17631272-17631291 Msa0241720:intron 20.0%
!!! ATATTTGTTGTTGAAGATAA+AGG - chr2_2:17631690-17631709 Msa0241720:CDS 20.0%
!!! AAAAACATTGATTATTAGTC+GGG - chr2_2:17632047-17632066 Msa0241720:intron 20.0%
!! AAAGAATATAGTGATGATAA+GGG - chr2_2:17632084-17632103 Msa0241720:intron 20.0%
!!! TTATCTTATTTCTTTATCGT+TGG + chr2_2:17632360-17632379 None:intergenic 20.0%
!!! GTGTCCATTTTTTTTTTTTT+TGG - chr2_2:17632605-17632624 Msa0241720:intron 20.0%
!! TATATCCATGCAATAATATA+TGG + chr2_2:17632653-17632672 None:intergenic 20.0%
!!! GAAAATGTTTTATGTAAAAG+TGG + chr2_2:17632725-17632744 None:intergenic 20.0%
!!! AGTTTTTTTCTTCTTCTTTT+AGG - chr2_2:17632824-17632843 Msa0241720:intron 20.0%
!! ATATTCATGTCTAATAACAA+AGG - chr2_2:17633173-17633192 Msa0241720:intron 20.0%
!! TATTCATGTCTAATAACAAA+GGG - chr2_2:17633174-17633193 Msa0241720:intron 20.0%
!! TTATCAAGAAATTTATCATC+AGG - chr2_2:17633335-17633354 Msa0241720:intron 20.0%
!! TATTTCATGCAATAAAATCA+AGG - chr2_2:17634180-17634199 Msa0241720:intron 20.0%
!!! AATTTGTTGTTTTCAATTGT+AGG - chr2_2:17634218-17634237 Msa0241720:intron 20.0%
!!! ATTTGTTGTTTTCAATTGTA+GGG - chr2_2:17634219-17634238 Msa0241720:intron 20.0%
!!! TATGTATGTTAACTTGATTT+AGG - chr2_2:17634414-17634433 Msa0241720:CDS 20.0%
!!! ATTTTTATCCTTGAATTGTT+GGG - chr2_2:17634604-17634623 Msa0241720:five_prime_UTR 20.0%
! ATACAATACAAAACACAACA+CGG + chr2_2:17629001-17629020 None:intergenic 25.0%
!!! TTCTAGTCTTGTAACTAAAA+GGG + chr2_2:17629248-17629267 None:intergenic 25.0%
!!! TGTTTTTTATCTTAACCTTC+CGG + chr2_2:17629544-17629563 None:intergenic 25.0%
! TCTTAGTTGTATCAAAATAG+GGG - chr2_2:17629730-17629749 Msa0241720:intron 25.0%
! ACAAAGCTTAACAAATGAAT+AGG + chr2_2:17630193-17630212 None:intergenic 25.0%
! TTGTCAATAAAAGAGACATA+TGG - chr2_2:17630243-17630262 Msa0241720:intron 25.0%
! TTTGTTTCATTCTTTGGTAA+TGG - chr2_2:17630335-17630354 Msa0241720:intron 25.0%
! GAATACATGAAGAAAAACTT+GGG + chr2_2:17630373-17630392 None:intergenic 25.0%
! AAAAAGTAATGAGTGTGTAA+TGG - chr2_2:17630492-17630511 Msa0241720:intron 25.0%
! ATCTTTAATGCTTTCTTATG+AGG - chr2_2:17630646-17630665 Msa0241720:intron 25.0%
!! GAAGCACTTATAGAATTATT+TGG - chr2_2:17631118-17631137 Msa0241720:intron 25.0%
! TGCAATAGAATACATATGAT+TGG + chr2_2:17631379-17631398 None:intergenic 25.0%
! TATCATACATGCTATGTTAT+TGG + chr2_2:17631590-17631609 None:intergenic 25.0%
! GAAAGAATATAGTGATGATA+AGG - chr2_2:17632083-17632102 Msa0241720:intron 25.0%
!!! CGTAATTGATTGCTTTTTTT+AGG - chr2_2:17632689-17632708 Msa0241720:intron 25.0%
!!! TATTAGGAATATTTTAGGAC+TGG - chr2_2:17632894-17632913 Msa0241720:CDS 25.0%
! GCTTGAAGAAAGAAAAAAAA+TGG - chr2_2:17633017-17633036 Msa0241720:intron 25.0%
!! AAGGGAATAAATTTTATTCG+AGG - chr2_2:17633192-17633211 Msa0241720:intron 25.0%
!! ATGTGATTTTTATCATGTAC+AGG - chr2_2:17633234-17633253 Msa0241720:intron 25.0%
!! TTTTTATCATGTACAGGATT+CGG - chr2_2:17633240-17633259 Msa0241720:intron 25.0%
! GTTTCAAAATCTATACTTTG+AGG - chr2_2:17633471-17633490 Msa0241720:intron 25.0%
! ATTGCCAAAAATTTATACCA+TGG - chr2_2:17633520-17633539 Msa0241720:intron 25.0%
! TCAATAATCACTTTGTAATC+TGG + chr2_2:17633631-17633650 None:intergenic 25.0%
!!! AACAGTTTTGTTATGTTACA+TGG - chr2_2:17633808-17633827 Msa0241720:intron 25.0%
! TTCAATCAATTGATGAAGTA+TGG + chr2_2:17633962-17633981 None:intergenic 25.0%
! TGTGACTTTCAATATCTTTA+AGG - chr2_2:17634047-17634066 Msa0241720:CDS 25.0%
!! AATATCTTTAAGGACTTGTA+TGG - chr2_2:17634057-17634076 Msa0241720:CDS 25.0%
! AAGTCATCTTACCTTATTAA+TGG + chr2_2:17634088-17634107 None:intergenic 25.0%
!!! TTCTTTGAGAAATCTTTTGA+AGG + chr2_2:17634145-17634164 None:intergenic 25.0%
! CAATAAAATCAAGGATATCA+TGG - chr2_2:17634189-17634208 Msa0241720:intron 25.0%
! ACCAAAGTCACAAAAAATAT+TGG - chr2_2:17634333-17634352 Msa0241720:intron 25.0%
!!! TCCAATATTTTTTGTGACTT+TGG + chr2_2:17634337-17634356 None:intergenic 25.0%
!! CATTGTTTCTCTTCAAAAAA+TGG + chr2_2:17634537-17634556 None:intergenic 25.0%
!! GATTTTTATCCTTGAATTGT+TGG - chr2_2:17634603-17634622 Msa0241720:five_prime_UTR 25.0%
! GTATTTCTGTCTTTGTTTCT+TGG - chr2_2:17628557-17628576 Msa0241720:CDS 30.0%
!!! TTTTTTGGCAATGTAGTGAA+TGG + chr2_2:17628844-17628863 None:intergenic 30.0%
AACTAAAAACTCTATACCAC+CGG + chr2_2:17628977-17628996 None:intergenic 30.0%
!! CTTCTAGTCTTGTAACTAAA+AGG + chr2_2:17629249-17629268 None:intergenic 30.0%
!! CTTTTAGTTACAAGACTAGA+AGG - chr2_2:17629247-17629266 Msa0241720:CDS 30.0%
GGTAGATGCTAAAGTTAATA+TGG - chr2_2:17629268-17629287 Msa0241720:CDS 30.0%
TAGATATGAGATTTGTGACA+AGG - chr2_2:17629298-17629317 Msa0241720:intron 30.0%
ATTGAGTCTAACAACATAGA+AGG + chr2_2:17629398-17629417 None:intergenic 30.0%
TCTATGTTGTTAGACTCAAT+TGG - chr2_2:17629398-17629417 Msa0241720:intron 30.0%
ACATTTCAACAATGCTACAT+TGG - chr2_2:17629636-17629655 Msa0241720:intron 30.0%
! TGCAATATCTTTTATGCTCA+AGG + chr2_2:17629774-17629793 None:intergenic 30.0%
CTTATCAGCGTAGTAAATAA+TGG + chr2_2:17629805-17629824 None:intergenic 30.0%
GTGATTTCAATTGTATATCG+CGG - chr2_2:17629824-17629843 Msa0241720:CDS 30.0%
GTTCAAATTCTACTATGCTA+TGG - chr2_2:17629860-17629879 Msa0241720:CDS 30.0%
GGAAGGATTAACAAATATAG+CGG - chr2_2:17630043-17630062 Msa0241720:intron 30.0%
AATACCAGTCTTGATAGAAA+AGG + chr2_2:17630069-17630088 None:intergenic 30.0%
TTTCTATCAAGACTGGTATT+AGG - chr2_2:17630069-17630088 Msa0241720:intron 30.0%
AATTTAACGTGATCAGCTAT+AGG - chr2_2:17630116-17630135 Msa0241720:intron 30.0%
CATTAATGAGAAGGTTTAGA+TGG + chr2_2:17630269-17630288 None:intergenic 30.0%
GAATGAAACAAATCTTTACC+TGG + chr2_2:17630327-17630346 None:intergenic 30.0%
ATGAAGAAAAACTTGGGAAA+TGG + chr2_2:17630367-17630386 None:intergenic 30.0%
GGAATACATGAAGAAAAACT+TGG + chr2_2:17630374-17630393 None:intergenic 30.0%
AGAAACCACATTGAACAAAT+TGG - chr2_2:17630616-17630635 Msa0241720:intron 30.0%
AATTTCTAAATCAGCACATG+TGG - chr2_2:17630853-17630872 Msa0241720:intron 30.0%
CAATATGATAAGTGCATCAT+TGG - chr2_2:17631059-17631078 Msa0241720:intron 30.0%
TGACACTGTTTGAATATAAG+CGG + chr2_2:17631320-17631339 None:intergenic 30.0%
ATATGTATTCTATTGCATCC+TGG - chr2_2:17631382-17631401 Msa0241720:intron 30.0%
! TAATGATGTGCAACAACTTT+TGG + chr2_2:17631486-17631505 None:intergenic 30.0%
ACAAATATGACAGATTACCA+AGG + chr2_2:17631565-17631584 None:intergenic 30.0%
TTTACCATCATTTCCTGTTA+AGG - chr2_2:17631751-17631770 Msa0241720:CDS 30.0%
ATCATTTCCTGTTAAGGAAA+CGG - chr2_2:17631757-17631776 Msa0241720:CDS 30.0%
CAATGTTGTCAAAATGGAAT+TGG - chr2_2:17631788-17631807 Msa0241720:CDS 30.0%
! TTTTCAAATTCTCGGTTGAA+CGG + chr2_2:17631820-17631839 None:intergenic 30.0%
! TTGATCGACTCTAAAAGTAA+AGG + chr2_2:17631875-17631894 None:intergenic 30.0%
ATTAGTGATATGGTTCATTG+TGG - chr2_2:17631969-17631988 Msa0241720:intron 30.0%
!! AATCTTGTTGGTTTGATCTT+CGG - chr2_2:17632015-17632034 Msa0241720:intron 30.0%
TTATTAGTCGGGTATGAATA+TGG - chr2_2:17632058-17632077 Msa0241720:intron 30.0%
TATTAGTCGGGTATGAATAT+GGG - chr2_2:17632059-17632078 Msa0241720:intron 30.0%
TGTCACGGAAATAAAAAAAC+AGG - chr2_2:17632196-17632215 Msa0241720:CDS 30.0%
! AACAAAACTCTTTTCGTAGT+TGG - chr2_2:17632418-17632437 Msa0241720:intron 30.0%
TAATGCATTTATCAAACACG+TGG - chr2_2:17632473-17632492 Msa0241720:intron 30.0%
ACGTATTCGACTTTATAGTT+AGG - chr2_2:17632583-17632602 Msa0241720:intron 30.0%
ACTTGCCATATATTATTGCA+TGG - chr2_2:17632645-17632664 Msa0241720:intron 30.0%
!!! TAGGACTGGAAGTTTTTTTT+AGG - chr2_2:17632908-17632927 Msa0241720:CDS 30.0%
!!! AGGACTGGAAGTTTTTTTTA+GGG - chr2_2:17632909-17632928 Msa0241720:CDS 30.0%
ATAGTTTCAGCATCTTCAAT+TGG + chr2_2:17633072-17633091 None:intergenic 30.0%
!!! AATTTTATTCGAGGCATTGT+CGG - chr2_2:17633201-17633220 Msa0241720:intron 30.0%
! TTTTATCATGTACAGGATTC+GGG - chr2_2:17633241-17633260 Msa0241720:intron 30.0%
! GTTTTCTTTGAGCTTCATTT+CGG + chr2_2:17633302-17633321 None:intergenic 30.0%
AGATGCTACACTTATTAATG+AGG - chr2_2:17633588-17633607 Msa0241720:intron 30.0%
! TATTAATGAGGCACTAAAGA+AGG - chr2_2:17633600-17633619 Msa0241720:intron 30.0%
TTTGAACAAGTGCAACAAAA+TGG - chr2_2:17633838-17633857 Msa0241720:intron 30.0%
! AGCTTTTAACGATGATGAAA+TGG - chr2_2:17633987-17634006 Msa0241720:intron 30.0%
TTTCAATTGTAGGGATTATC+AGG - chr2_2:17634228-17634247 Msa0241720:intron 30.0%
AGTCCAATTGATGAATACAT+TGG - chr2_2:17634252-17634271 Msa0241720:intron 30.0%
ATTCATTTCCCAACAATTCA+AGG + chr2_2:17634615-17634634 None:intergenic 30.0%
TCATCATCTTCTCAAGCTAA+TGG - chr2_2:17628726-17628745 Msa0241720:CDS 35.0%
AATGGTGTTTCCTTAGTTCA+AGG - chr2_2:17628744-17628763 Msa0241720:intron 35.0%
! CAGTTGATGCATTAGGATTA+CGG + chr2_2:17629078-17629097 None:intergenic 35.0%
GTAATCCTAATGCATCAACT+GGG - chr2_2:17629077-17629096 Msa0241720:intron 35.0%
! TCGACTTCAAATTTTGCCTT+TGG - chr2_2:17629129-17629148 Msa0241720:CDS 35.0%
CTTTCAACAGTCAAATCCAA+AGG + chr2_2:17629148-17629167 None:intergenic 35.0%
GACTGTTGAAAGTTCTATTG+AGG - chr2_2:17629156-17629175 Msa0241720:CDS 35.0%
! TTAGACACCAAGTTGAGATT+TGG - chr2_2:17629219-17629238 Msa0241720:CDS 35.0%
GTCTGACCAAAGATTATTTG+AGG + chr2_2:17629469-17629488 None:intergenic 35.0%
AATGCTACATTGGATAAGTG+AGG - chr2_2:17629646-17629665 Msa0241720:intron 35.0%
GATACAACTAAGAATGGCAA+TGG + chr2_2:17629723-17629742 None:intergenic 35.0%
ATCAGCGTAGTAAATAATGG+TGG + chr2_2:17629802-17629821 None:intergenic 35.0%
CCATAGCGAATTTGAACAAA+TGG + chr2_2:17629954-17629973 None:intergenic 35.0%
CCATTTGTTCAAATTCGCTA+TGG - chr2_2:17629951-17629970 Msa0241720:intron 35.0%
!! CAAGTGGGTTAACTTAATCA+GGG + chr2_2:17629997-17630016 None:intergenic 35.0%
!! ACAAGTGGGTTAACTTAATC+AGG + chr2_2:17629998-17630017 None:intergenic 35.0%
!! ATCAGCTATAGGCTTTGTTT+AGG - chr2_2:17630127-17630146 Msa0241720:intron 35.0%
! CTCTTTTATTGACAATGCAG+AGG + chr2_2:17630238-17630257 None:intergenic 35.0%
AACCTTCTCATTAATGCATC+TGG - chr2_2:17630273-17630292 Msa0241720:intron 35.0%
AAGTAATGAGTGTGTAATGG+AGG - chr2_2:17630495-17630514 Msa0241720:intron 35.0%
! CTTCTCCAATTTGTTCAATG+TGG + chr2_2:17630624-17630643 None:intergenic 35.0%
! GTTACCTTGATAACCAAGAT+AGG + chr2_2:17630686-17630705 None:intergenic 35.0%
TGGGTTTCTTTATGTGTATG+AGG - chr2_2:17630775-17630794 Msa0241720:intron 35.0%
TATGAGGTTATAGAAGCCTT+AGG - chr2_2:17630791-17630810 Msa0241720:intron 35.0%
ATGAGGTTATAGAAGCCTTA+GGG - chr2_2:17630792-17630811 Msa0241720:intron 35.0%
GAATTATTTGGGAGAACCTA+TGG - chr2_2:17631130-17631149 Msa0241720:intron 35.0%
CAGATTACCAAGGAATTTCT+TGG + chr2_2:17631555-17631574 None:intergenic 35.0%
GTTTCCTTAACAGGAAATGA+TGG + chr2_2:17631758-17631777 None:intergenic 35.0%
ACCTAGCAATGTTGTCAAAA+TGG - chr2_2:17631782-17631801 Msa0241720:CDS 35.0%
!! TCCATTTTGACAACATTGCT+AGG + chr2_2:17631786-17631805 None:intergenic 35.0%
! CCGGAAGATTTTCAAATTCT+CGG + chr2_2:17631828-17631847 None:intergenic 35.0%
CCGAGAATTTGAAAATCTTC+CGG - chr2_2:17631825-17631844 Msa0241720:intron 35.0%
GAATTTGAAAATCTTCCGGT+TGG - chr2_2:17631829-17631848 Msa0241720:intron 35.0%
AGTAAAGGATGGATCAAATG+CGG + chr2_2:17631860-17631879 None:intergenic 35.0%
! TCGACTCTAAAAGTAAAGGA+TGG + chr2_2:17631871-17631890 None:intergenic 35.0%
! AAACCAACAAGATTTTCAGC+TGG + chr2_2:17632009-17632028 None:intergenic 35.0%
!! CAATCTGATTGGTAACGAAT+TGG + chr2_2:17632178-17632197 None:intergenic 35.0%
TATTTCCGTGACAATCTGAT+TGG + chr2_2:17632189-17632208 None:intergenic 35.0%
ACTATCAAGAATGCATGCAA+AGG - chr2_2:17633087-17633106 Msa0241720:intron 35.0%
AAGCTCAAAGAAAACTTGTG+AGG - chr2_2:17633307-17633326 Msa0241720:intron 35.0%
TGAACTTTCAGGAAACTTTG+AGG - chr2_2:17633380-17633399 Msa0241720:intron 35.0%
ATCCATTGTCCAATGACTAA+TGG + chr2_2:17633557-17633576 None:intergenic 35.0%
TAGAAATACTGAAGAGCTTC+TGG - chr2_2:17633663-17633682 Msa0241720:intron 35.0%
AATATCACCAGTAGTTTGAG+AGG + chr2_2:17633743-17633762 None:intergenic 35.0%
! ACTATTTCTCATGCAGTTGT+TGG - chr2_2:17633867-17633886 Msa0241720:intron 35.0%
ATAAGCACTTACAAGTACGA+TGG - chr2_2:17633898-17633917 Msa0241720:intron 35.0%
AGATGAGTTTGATGAGAATG+TGG - chr2_2:17633921-17633940 Msa0241720:intron 35.0%
GTATGGCACAACCATTAATA+AGG - chr2_2:17634074-17634093 Msa0241720:CDS 35.0%
GCTCCAATGTATTCATCAAT+TGG + chr2_2:17634258-17634277 None:intergenic 35.0%
! TTTTGTGACTTTGGTTACCT+TGG + chr2_2:17634328-17634347 None:intergenic 35.0%
TTCATTTGCCAGATCATTCA+AGG + chr2_2:17634452-17634471 None:intergenic 35.0%
AGAGAAAAGAACATGAAGCG+TGG + chr2_2:17628594-17628613 None:intergenic 40.0%
TGAAGAAGAGAATGCTCTTC+TGG + chr2_2:17628706-17628725 None:intergenic 40.0%
CACTGACACAAACATAGACA+CGG - chr2_2:17628917-17628936 Msa0241720:CDS 40.0%
ACAAACATAGACACGGACAT+TGG - chr2_2:17628924-17628943 Msa0241720:intron 40.0%
GACATTGGACACAATTGTTG+CGG - chr2_2:17628939-17628958 Msa0241720:intron 40.0%
CGTAATCCTAATGCATCAAC+TGG - chr2_2:17629076-17629095 Msa0241720:intron 40.0%
AACTGGGCTTCTTCATTTGA+AGG - chr2_2:17629093-17629112 Msa0241720:CDS 40.0%
! CAGTAATCTGGAATTCGTCT+GGG + chr2_2:17629503-17629522 None:intergenic 40.0%
ATATGTCAGCTACTAGTTGG+AGG + chr2_2:17629680-17629699 None:intergenic 40.0%
TCCAACTAGTAGCTGACATA+TGG - chr2_2:17629679-17629698 Msa0241720:intron 40.0%
TCCATATGTCAGCTACTAGT+TGG + chr2_2:17629683-17629702 None:intergenic 40.0%
GAATGGCAATGGTTATAGTG+TGG + chr2_2:17629712-17629731 None:intergenic 40.0%
TTGTACCAAATAGCACATCG+CGG - chr2_2:17629920-17629939 Msa0241720:intron 40.0%
CCATTTCGAAACTGACAAGT+GGG + chr2_2:17630012-17630031 None:intergenic 40.0%
CCACTTGTCAGTTTCGAAAT+GGG - chr2_2:17630010-17630029 Msa0241720:intron 40.0%
TGCCAGATGCATTAATGAGA+AGG + chr2_2:17630278-17630297 None:intergenic 40.0%
TCTTATGAGGTTAATGCCGT+CGG - chr2_2:17630659-17630678 Msa0241720:intron 40.0%
TCTATTGGCGATAATCGTCT+CGG - chr2_2:17630954-17630973 Msa0241720:intron 40.0%
! CTTTTGGACTGAGTACTCTT+TGG + chr2_2:17631470-17631489 None:intergenic 40.0%
AATGTCAAGAGCCATGACAA+TGG - chr2_2:17631508-17631527 Msa0241720:intron 40.0%
CAAAGAACTTGCCATTGTCA+TGG + chr2_2:17631522-17631541 None:intergenic 40.0%
ACAATGGCAAGTTCTTTGCT+TGG - chr2_2:17631524-17631543 Msa0241720:intron 40.0%
CAATGGCAAGTTCTTTGCTT+GGG - chr2_2:17631525-17631544 Msa0241720:intron 40.0%
TAGGTAACCGTTTCCTTAAC+AGG + chr2_2:17631767-17631786 None:intergenic 40.0%
!!! CTTTTAGAGTCGATCAAACC+CGG - chr2_2:17631878-17631897 Msa0241720:intron 40.0%
GAACCAGCTGAAAATCTTGT+TGG - chr2_2:17632003-17632022 Msa0241720:intron 40.0%
CGTTACCAATCAGATTGTCA+CGG - chr2_2:17632181-17632200 Msa0241720:intron 40.0%
CATTCATCTTGTAAGCTGTG+AGG + chr2_2:17632244-17632263 None:intergenic 40.0%
!!! AAGCTAGCCATTTTTGTACG+AGG - chr2_2:17632331-17632350 Msa0241720:intron 40.0%
AGATCGTAGGCTCTATCAAT+CGG + chr2_2:17632543-17632562 None:intergenic 40.0%
! TTCATTTCGGTGTGCTAGTA+CGG + chr2_2:17633289-17633308 None:intergenic 40.0%
TCAAAGAAAACTTGTGAGGC+TGG - chr2_2:17633311-17633330 Msa0241720:intron 40.0%
CAGCTCAAAACTGAACTTTC+AGG - chr2_2:17633369-17633388 Msa0241720:intron 40.0%
AGCCATTAGTCATTGGACAA+TGG - chr2_2:17633552-17633571 Msa0241720:intron 40.0%
GGCAATGCTTGTAAAGAGAA+TGG + chr2_2:17633705-17633724 None:intergenic 40.0%
TTACCTTGGCCAAGTATCTT+TGG + chr2_2:17634314-17634333 None:intergenic 40.0%
CCTAGCAACAGAATCATGAA+TGG + chr2_2:17634563-17634582 None:intergenic 40.0%
CCATTCATGATTCTGTTGCT+AGG - chr2_2:17634560-17634579 Msa0241720:CDS 40.0%
ATTCTGTTGCTAGGAAGACA+TGG - chr2_2:17634569-17634588 Msa0241720:exon 40.0%
TTCTGTTGCTAGGAAGACAT+GGG - chr2_2:17634570-17634589 Msa0241720:exon 40.0%
!! ATGGAAGTGTTATGAGTGGG+GGG + chr2_2:17628651-17628670 None:intergenic 45.0%
!! CATGGAAGTGTTATGAGTGG+GGG + chr2_2:17628652-17628671 None:intergenic 45.0%
!! CCATGGAAGTGTTATGAGTG+GGG + chr2_2:17628653-17628672 None:intergenic 45.0%
!! GCCATGGAAGTGTTATGAGT+GGG + chr2_2:17628654-17628673 None:intergenic 45.0%
!! AGCCATGGAAGTGTTATGAG+TGG + chr2_2:17628655-17628674 None:intergenic 45.0%
TCTGGAAGCTCCTTGAACTA+AGG + chr2_2:17628757-17628776 None:intergenic 45.0%
TTAGTTCAAGGAGCTTCCAG+AGG - chr2_2:17628756-17628775 Msa0241720:intron 45.0%
! GAATTCAAGACCGATTCCTC+TGG + chr2_2:17628775-17628794 None:intergenic 45.0%
! AGAAGCCCAGTTGATGCATT+AGG + chr2_2:17629085-17629104 None:intergenic 45.0%
AGGGTCACCAAATCTCAACT+TGG + chr2_2:17629229-17629248 None:intergenic 45.0%
! GCAGTAATCTGGAATTCGTC+TGG + chr2_2:17629504-17629523 None:intergenic 45.0%
! TTGTTCCGCGATGTGCTATT+TGG + chr2_2:17629928-17629947 None:intergenic 45.0%
CCCACTTGTCAGTTTCGAAA+TGG - chr2_2:17630009-17630028 Msa0241720:intron 45.0%
CCCATTTCGAAACTGACAAG+TGG + chr2_2:17630013-17630032 None:intergenic 45.0%
TTCGAAATGGGAACGTGTCT+AGG - chr2_2:17630022-17630041 Msa0241720:intron 45.0%
AAATGGGAACGTGTCTAGGA+AGG - chr2_2:17630026-17630045 Msa0241720:intron 45.0%
!!! TGTTTTTAGTGCGTGCAAGC+GGG + chr2_2:17630399-17630418 None:intergenic 45.0%
!!! CTGTTTTTAGTGCGTGCAAG+CGG + chr2_2:17630400-17630419 None:intergenic 45.0%
GCAGCAGATTTGTGAGAACA+CGG - chr2_2:17630468-17630487 Msa0241720:intron 45.0%
GATAACCAAGATAGGACCGA+CGG + chr2_2:17630678-17630697 None:intergenic 45.0%
CGGTCCTATCTTGGTTATCA+AGG - chr2_2:17630679-17630698 Msa0241720:intron 45.0%
GACTCAAACTACATGCCCTA+AGG + chr2_2:17630810-17630829 None:intergenic 45.0%
ATGTGGCCTCTTCTTAAAGC+TGG - chr2_2:17630870-17630889 Msa0241720:intron 45.0%
TTAAAGCTGGAGGTGGCATT+GGG - chr2_2:17630883-17630902 Msa0241720:intron 45.0%
!! TTGTGGCTAGTTTGAGTGCA+AGG - chr2_2:17630925-17630944 Msa0241720:intron 45.0%
!! TGTGGCTAGTTTGAGTGCAA+GGG - chr2_2:17630926-17630945 Msa0241720:intron 45.0%
AGTGCAAGGGTTGCATCTAT+TGG - chr2_2:17630939-17630958 Msa0241720:intron 45.0%
CTATTGGCGATAATCGTCTC+GGG - chr2_2:17630955-17630974 Msa0241720:intron 45.0%
TATTGGCGATAATCGTCTCG+GGG - chr2_2:17630956-17630975 Msa0241720:intron 45.0%
AGTGTCAAAGACGATCTCGT+TGG - chr2_2:17631333-17631352 Msa0241720:intron 45.0%
AGATCTGTGTCAACTGTACC+AGG + chr2_2:17631403-17631422 None:intergenic 45.0%
TCAAATGCGGTTGAACCAAC+CGG + chr2_2:17631847-17631866 None:intergenic 45.0%
TTCAAACTGATTGTCCCACC+GGG + chr2_2:17631899-17631918 None:intergenic 45.0%
GTTCAAACTGATTGTCCCAC+CGG + chr2_2:17631900-17631919 None:intergenic 45.0%
GGTGGGACAATCAGTTTGAA+CGG - chr2_2:17631899-17631918 Msa0241720:intron 45.0%
!!! CTAGCCATTTTTGTACGAGG+AGG - chr2_2:17632334-17632353 Msa0241720:intron 45.0%
TTGGCCTCCTCGTACAAAAA+TGG + chr2_2:17632341-17632360 None:intergenic 45.0%
GTGTGATACGACTAGATCGT+AGG + chr2_2:17632556-17632575 None:intergenic 45.0%
AGTGTAGCATCTCTTTCAGC+TGG + chr2_2:17633580-17633599 None:intergenic 45.0%
GAGAGGCAACATCTTCTTCA+AGG + chr2_2:17633726-17633745 None:intergenic 45.0%
GATGTTGCCTCTCAAACTAC+TGG - chr2_2:17633733-17633752 Msa0241720:intron 45.0%
CGATGACAGCCAAAGATACT+TGG - chr2_2:17634302-17634321 Msa0241720:intron 45.0%
ATCTCACGCCTTGAATGATC+TGG - chr2_2:17634441-17634460 Msa0241720:CDS 45.0%
TATTGTCACTCGTGCAGAGA+AGG - chr2_2:17634492-17634511 Msa0241720:CDS 45.0%
TCTGTTGCTAGGAAGACATG+GGG - chr2_2:17634571-17634590 Msa0241720:exon 45.0%
!!! TAAATTTTATTTTATTTTTG+AGG + chr2_2:17632517-17632536 None:intergenic 5.0%
!! TCAAAAATAAAATAAAATTT+AGG - chr2_2:17632516-17632535 Msa0241720:CDS 5.0%
CCCCACTCATAACACTTCCA+TGG - chr2_2:17628650-17628669 Msa0241720:CDS 50.0%
TGGCTAGTGATAGAAGCCGA+GGG + chr2_2:17628686-17628705 None:intergenic 50.0%
CAAGGAGCTTCCAGAGGAAT+CGG - chr2_2:17628762-17628781 Msa0241720:intron 50.0%
ATTACTGCTGCCCTCTTCCT+TGG - chr2_2:17629516-17629535 Msa0241720:CDS 50.0%
ATCTTAACCTTCCGGCACCA+AGG + chr2_2:17629536-17629555 None:intergenic 50.0%
! GCGGCCTTTTCTATCAAGAC+TGG - chr2_2:17630062-17630081 Msa0241720:intron 50.0%
!! ATACCTGAAGTGCTGCAACC+AGG - chr2_2:17630306-17630325 Msa0241720:intron 50.0%
TTACCTGGTTGCAGCACTTC+AGG + chr2_2:17630312-17630331 None:intergenic 50.0%
!!! GTTTTTAGTGCGTGCAAGCG+GGG + chr2_2:17630398-17630417 None:intergenic 50.0%
TAATGCCGTCGGTCCTATCT+TGG - chr2_2:17630670-17630689 Msa0241720:intron 50.0%
TGGCCTCTTCTTAAAGCTGG+AGG - chr2_2:17630873-17630892 Msa0241720:intron 50.0%
!! CCACCTCCAGCTTTAAGAAG+AGG + chr2_2:17630879-17630898 None:intergenic 50.0%
CCTCTTCTTAAAGCTGGAGG+TGG - chr2_2:17630876-17630895 Msa0241720:intron 50.0%
CTTAAAGCTGGAGGTGGCAT+TGG - chr2_2:17630882-17630901 Msa0241720:intron 50.0%
GGAAAGAAGTGGTGCAGTTG+TGG - chr2_2:17630908-17630927 Msa0241720:intron 50.0%
ATTGGCGATAATCGTCTCGG+GGG - chr2_2:17630957-17630976 Msa0241720:intron 50.0%
! TCGGGGGTTGGCATTCATAT+CGG - chr2_2:17630973-17630992 Msa0241720:intron 50.0%
GTTGGAGTTTGCGAGGAAGA+AGG - chr2_2:17631351-17631370 Msa0241720:intron 50.0%
GGCAAGTTCTTTGCTTGGGA+TGG - chr2_2:17631529-17631548 Msa0241720:intron 50.0%
GGGATGGCCAAGAAATTCCT+TGG - chr2_2:17631545-17631564 Msa0241720:intron 50.0%
TTAGAGTCGATCAAACCCGG+TGG - chr2_2:17631881-17631900 Msa0241720:intron 50.0%
TAGAGTCGATCAAACCCGGT+GGG - chr2_2:17631882-17631901 Msa0241720:intron 50.0%
GGGACAATCAGTTTGAACGG+TGG - chr2_2:17631902-17631921 Msa0241720:intron 50.0%
GCTGTCATCGATGCATCGAA+CGG + chr2_2:17634292-17634311 None:intergenic 50.0%
CAGCCAAAGATACTTGGCCA+AGG - chr2_2:17634308-17634327 Msa0241720:intron 50.0%
TCGTGCAGAGAAGGACTTGA+AGG - chr2_2:17634501-17634520 Msa0241720:CDS 50.0%
! GAAGTGTTATGAGTGGGGGG+TGG + chr2_2:17628648-17628667 None:intergenic 55.0%
GGCTAGTGATAGAAGCCGAG+GGG + chr2_2:17628685-17628704 None:intergenic 55.0%
CTGGCTAGTGATAGAAGCCG+AGG + chr2_2:17628687-17628706 None:intergenic 55.0%
CTCTATACCACCGGCATGTG+CGG + chr2_2:17628968-17628987 None:intergenic 55.0%
GGAAGAGGGCAGCAGTAATC+TGG + chr2_2:17629515-17629534 None:intergenic 55.0%
! GGCATTGGGACGGAAAGAAG+TGG - chr2_2:17630897-17630916 Msa0241720:intron 55.0%
CGATCTCGTTGGAGTTTGCG+AGG - chr2_2:17631344-17631363 Msa0241720:intron 55.0%
CCATGGCTTCACGTTCCCCT+CGG - chr2_2:17628667-17628686 Msa0241720:CDS 60.0%
CCTTCCGGCACCAAGGAAGA+GGG + chr2_2:17629529-17629548 None:intergenic 60.0%
ACCTTCCGGCACCAAGGAAG+AGG + chr2_2:17629530-17629549 None:intergenic 60.0%
TTTAGTGCGTGCAAGCGGGG+TGG + chr2_2:17630395-17630414 None:intergenic 60.0%
! AGCTGGAGGTGGCATTGGGA+CGG - chr2_2:17630887-17630906 Msa0241720:intron 60.0%
GCGATAATCGTCTCGGGGGT+TGG - chr2_2:17630961-17630980 Msa0241720:intron 60.0%
CCGAGGGGAACGTGAAGCCA+TGG + chr2_2:17628670-17628689 None:intergenic 65.0%
GTTGCGGACACCGCACATGC+CGG - chr2_2:17628955-17628974 Msa0241720:intron 65.0%
! GCTGCCCTCTTCCTTGGTGC+CGG - chr2_2:17629522-17629541 Msa0241720:CDS 65.0%
!! CCCTCTTCCTTGGTGCCGGA+AGG - chr2_2:17629526-17629545 Msa0241720:CDS 65.0%
GCGGACACCGCACATGCCGG+TGG - chr2_2:17628958-17628977 Msa0241720:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 17628546 17634636 17628546 ID=Msa0241720;Name=Msa0241720
chr2_2 mRNA 17628546 17634636 17628546 ID=Msa0241720-mRNA-1;Parent=Msa0241720;Name=Msa0241720-mRNA-1;_AED=0.24;_eAED=0.24;_QI=54|0.5|0.36|1|0.8|0.81|11|0|571
chr2_2 exon 17628546 17628746 17628546 ID=Msa0241720-mRNA-1:exon:7208;Parent=Msa0241720-mRNA-1
chr2_2 exon 17628853 17628942 17628853 ID=Msa0241720-mRNA-1:exon:7207;Parent=Msa0241720-mRNA-1
chr2_2 exon 17629087 17629299 17629087 ID=Msa0241720-mRNA-1:exon:7206;Parent=Msa0241720-mRNA-1
chr2_2 exon 17629414 17629632 17629414 ID=Msa0241720-mRNA-1:exon:7205;Parent=Msa0241720-mRNA-1
chr2_2 exon 17629781 17629926 17629781 ID=Msa0241720-mRNA-1:exon:7204;Parent=Msa0241720-mRNA-1
chr2_2 exon 17631616 17631809 17631616 ID=Msa0241720-mRNA-1:exon:7203;Parent=Msa0241720-mRNA-1
chr2_2 exon 17632188 17632315 17632188 ID=Msa0241720-mRNA-1:exon:7202;Parent=Msa0241720-mRNA-1
chr2_2 exon 17632482 17632564 17632482 ID=Msa0241720-mRNA-1:exon:7201;Parent=Msa0241720-mRNA-1
chr2_2 exon 17632855 17632948 17632855 ID=Msa0241720-mRNA-1:exon:7200;Parent=Msa0241720-mRNA-1
chr2_2 exon 17634005 17634157 17634005 ID=Msa0241720-mRNA-1:exon:7199;Parent=Msa0241720-mRNA-1
chr2_2 exon 17634388 17634636 17634388 ID=Msa0241720-mRNA-1:exon:7198;Parent=Msa0241720-mRNA-1
chr2_2 five_prime_UTR 17634583 17634636 17634583 ID=Msa0241720-mRNA-1:five_prime_utr;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17634388 17634582 17634388 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17634005 17634157 17634005 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17632855 17632948 17632855 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17632482 17632564 17632482 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17632188 17632315 17632188 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17631616 17631809 17631616 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17629781 17629926 17629781 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17629414 17629632 17629414 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17629087 17629299 17629087 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17628853 17628942 17628853 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
chr2_2 CDS 17628546 17628746 17628546 ID=Msa0241720-mRNA-1:cds;Parent=Msa0241720-mRNA-1
Gene Sequence

>Msa0241720

ATGTTCTTTTCTCTTTCATATGATTCTCTATTGCTATCGCTATTGCCACCCCCCACTCATAACACTTCCATGGCTTCACGTTCCCCTCGGCTTCTATCACTAGCCAGAAGAGCATTCTCTTCTTCATCATCATCTTCTCAAGCTAATGGTGTTTCCTTAGTTCAAGGAGCTTCCAGAGGAATCGGTCTTGAATTCGTGAAACAATTGTTAGAGAAGAATGATAAAGAGCATGTTGTTGCTACTTGCCGTAATCCTAATGCATCAACTGGGCTTCTTCATTTGAAGGATAGATTTGATGATCGACTTCAAATTTTGCCTTTGGATTTGACTGTTGAAAGTTCTATTGAGGCCTCTGCATTGTCAATAAAAGAGACATATGGCCATCTAAACCTTCTCATTAATGCATCTGGCATTCTTTCAATACCTGAAGTGCTGCAACCAGAAACCACATTGAACAAATTGGAGAAGTCATCTTTAATGCTTTCTTATGAGGTTAATGCCGTCGGTCCTATCTTGGTTATCAAGCACATGTGGCCTCTTCTTAAAGCTGGAGGTGGCATTGGGACGGAAAGAAGTGGTGCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGCATCTATTGGCGATAATCGTCTCGGGGGTTGGCATTCATATCGGATCCAATCATATGTATTCTATTGCATCCTGGTACAGTTGACACAGATCTTTCTAAGCCATTTCAAAAAAATATTGCTAAAGAAAAGCTCTTCACCAAAGAGTACTCAGTCCAAAAGTTGTTGCACATCATTAACAATGTCAAGAGCCATGACAATGGCAAGTTCTTTGCTTGGGATGGCCAAGAAATTCCTTGGATTCGGGACAAATGAGACTGCGATTATATCCGTACTAGCACACCGAAATGAAGCTCAAAGAAAACTTGTGAGGCTGGCTTATCAAGAAATTTATCATCAGGATCTTATAGAACAGCTCAAAACTGAACTTTCAGGAAACTTTGAGAGAGCCATTAGTCATTGGACAATGGATCCAGCTGAAAGAGATGCTACACTTATTAATGAGGCACTAAAGAAGGCAACACCAGATTACAAAGTGATTATTGAGATTGTTTGCACTAGAAATACTGAAGAGCTTCTGGCTTTAAAGCGTTCATACCATTCTCTTTACAAGCATTGCCTTGAAGAAGATGTTGCCTCTCAAACTACTGGTGATATTCGCAAATTGTTGGTTGCAGTTATAAGCACTTACAAGTACGATGGAGATGAGTTTGATGAGAATGTGGCTCATTCTGAAGCAACCATACTTCATCAATTGATTGAAAAGAAAGCTTTTAACGATGATGAAATGGTTAGAATTTTAAGCACAAGAAGTAAGAAGCAGCTATGTGTGACTTTCAATATCTTTAAGGACTTGTATGGCACAACCATTAATAAGGGATTATCAGGTAGTCCAATTGATGAATACATTGGAGCACTGCGTACTACCGTTCGATGCATCGATGACAGCCAAAGATACTTGGCCAAGGTGTTATCTCACGCCTTGAATGATCTGGCAAATGAAGAAAATGCATTGAGTCGTGTTATTGTCACTCGTGCAGAGAAGGACTTGAAGGAAATCAATGACCATTTTTTGAAGAGAAACAATGTCACCATTCATGATTCTGTTGCTAGGAAGACATGGGGAAATTACAAGATTTTTATCCTTGAATTGTTGGGAAATGAATAA

Protein sequence

>Msa0241720

MFFSLSYDSLLLSLLPPPTHNTSMASRSPRLLSLARRAFSSSSSSSQANGVSLVQGASRGIGLEFVKQLLEKNDKEHVVATCRNPNASTGLLHLKDRFDDRLQILPLDLTVESSIEASALSIKETYGHLNLLINASGILSIPEVLQPETTLNKLEKSSLMLSYEVNAVGPILVIKHMWPLLKAGGGIGTERSGAVVASLSARVASIGDNRLGGWHSYRIQSYVFYCILVQLTQIFLSHFKKILLKKSSSPKSTQSKSCCTSLTMSRAMTMASSLLGMAKKFLGFGTNETAIISVLAHRNEAQRKLVRLAYQEIYHQDLIEQLKTELSGNFERAISHWTMDPAERDATLINEALKKATPDYKVIIEIVCTRNTEELLALKRSYHSLYKHCLEEDVASQTTGDIRKLLVAVISTYKYDGDEFDENVAHSEATILHQLIEKKAFNDDEMVRILSTRSKKQLCVTFNIFKDLYGTTINKGLSGSPIDEYIGALRTTVRCIDDSQRYLAKVLSHALNDLANEENALSRVIVTRAEKDLKEINDHFLKRNNVTIHDSVARKTWGNYKIFILELLGNE*