AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462240 MtrunA17_Chr3g0082841 91.736 242 19 1 14 255 3 243 1.63e-165 457
Msa0462240 MtrunA17_Chr5g0398901 42.045 88 49 1 144 231 17 102 1.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462240 AT3G17670.1 52.155 232 101 2 33 255 6 236 1.89e-82 247
Msa0462240 AT3G17670.2 52.778 216 92 2 33 239 6 220 2.94e-76 232

Find 106 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGCACACCCGTATTTCTT+TGG 0.222264 3_3:-61013616 None:intergenic
CTGCTGCTGCTGTGCTTTGG+TGG 0.284352 3_3:-61013589 None:intergenic
TGTTAATACATCATAGGATT+TGG 0.288091 3_3:+61016205 Msa0462240:exon
ACAGGTGTGTATATGCCTTT+TGG 0.308053 3_3:+61016307 Msa0462240:three_prime_UTR
AATTAATATATATACATATC+TGG 0.309788 3_3:-61013448 None:intergenic
CGGGACGGCTGCTCGTTGTT+TGG 0.315956 3_3:+61013797 Msa0462240:CDS
GGAAGGAAGCCAGCTTTGTT+TGG 0.321861 3_3:-61013562 None:intergenic
CTGCTGTGCTTTGGTGGTGC+AGG 0.322544 3_3:-61013583 None:intergenic
CTTCTGCTGCTGCTGTGCTT+TGG 0.338547 3_3:-61013592 None:intergenic
GCTATAGATTTAAAACCATT+TGG 0.341600 3_3:+61014137 Msa0462240:CDS
GTGCACACCCGTATTTCTTT+GGG 0.344936 3_3:-61013615 None:intergenic
GCCAGCTTTGTTTGGGTGAT+GGG 0.345679 3_3:-61013554 None:intergenic
GAGAAGGGAATGGATAATTA+AGG 0.347193 3_3:-61013414 None:intergenic
GGCATTGAACAAATTCGATT+TGG 0.354216 3_3:+61015479 Msa0462240:CDS
CTGTCAAGGTGATGCCCATT+TGG 0.356146 3_3:+61015458 Msa0462240:CDS
TGTAAAGTCGTCCGGTTGCT+TGG 0.362043 3_3:+61013713 Msa0462240:CDS
TGCTTCTGTTAATACATCAT+AGG 0.368387 3_3:+61016199 Msa0462240:CDS
GGCTCGAATAACAAAGCTTC+AGG 0.382570 3_3:+61016169 Msa0462240:intron
CGAATTTGTTCAATGCCAAA+TGG 0.393150 3_3:-61015473 None:intergenic
TTGGGTCACCTCTGAATACT+TGG 0.395476 3_3:-61014344 None:intergenic
ACCTCATCATCCGCTATTGC+GGG 0.397200 3_3:+61013778 Msa0462240:CDS
GAAGGAAGCCAGCTTTGTTT+GGG 0.402768 3_3:-61013561 None:intergenic
TGGATAATTAAGGATAGAAT+TGG 0.405103 3_3:-61013404 None:intergenic
GAGACCATGGTAAGTCTGTT+TGG 0.410408 3_3:+61013819 Msa0462240:CDS
CAAATTCGATTTGGCAGAGC+AGG 0.423742 3_3:+61015488 Msa0462240:CDS
GACGACTTTACAGAGACGTT+TGG 0.431405 3_3:-61013702 None:intergenic
ACTGGAAATGGCAAACTACT+TGG 0.432811 3_3:+61014282 Msa0462240:CDS
TGCTCTTGCTTTGAGGAAGA+AGG 0.433872 3_3:+61013863 Msa0462240:CDS
AATTGGCGTGGATGCGGTTA+CGG 0.442355 3_3:-61013490 None:intergenic
TGGTGGAGGAGATAATAGTT+TGG 0.444099 3_3:+61013839 Msa0462240:CDS
GTTTGCCATTTCCAGTCTTA+CGG 0.445012 3_3:-61014275 None:intergenic
GAGAGTTTCTAGAGTTTGAA+AGG 0.447053 3_3:-61013664 None:intergenic
TGCTTGGGTAAGTGCGGTGC+TGG 0.449594 3_3:+61013729 Msa0462240:CDS
TAGCGGATGATGAGGTAATC+AGG 0.450567 3_3:-61013771 None:intergenic
AAGAGACTGTGGGATTGAAT+TGG 0.451131 3_3:-61013507 None:intergenic
GTAAAGTCGTCCGGTTGCTT+GGG 0.451387 3_3:+61013714 Msa0462240:CDS
GTCATCCGTAAGACTGGAAA+TGG 0.453951 3_3:+61014270 Msa0462240:CDS
AGCAGAAGCCCAAAGAAATA+CGG 0.454994 3_3:+61013607 Msa0462240:CDS
GTTTGGATGCTCTTGCTTTG+AGG 0.461598 3_3:+61013856 Msa0462240:CDS
AGCCAGCTTTGTTTGGGTGA+TGG 0.465425 3_3:-61013555 None:intergenic
ACCGCACTTACCCAAGCAAC+CGG 0.465811 3_3:-61013724 None:intergenic
CTCTTTGTAAGCTGTCATGT+GGG 0.472330 3_3:+61013525 Msa0462240:CDS
TCAGGAAGGACCACCAGGTT+GGG 0.478230 3_3:-61013753 None:intergenic
CCGTCAGTCTAAATCATTCA+AGG 0.480103 3_3:+61015545 Msa0462240:CDS
AAAGGATCCTTGTTTGCGGC+AGG 0.482679 3_3:-61013646 None:intergenic
TCACTATAAATTGAATTCAC+TGG 0.484930 3_3:-61016249 None:intergenic
TATATATACATATCTGGAGT+TGG 0.484958 3_3:-61013442 None:intergenic
TTGTTTGCGGCAGGCACGGT+TGG 0.493358 3_3:-61013637 None:intergenic
ATCCTTGTTTGCGGCAGGCA+CGG 0.497473 3_3:-61013641 None:intergenic
GACTTTACAGAGACGTTTGG+AGG 0.498021 3_3:-61013699 None:intergenic
TACATCATAGGATTTGGCTT+GGG 0.499162 3_3:+61016211 Msa0462240:exon
GTGAATTCAATTTATAGTGA+TGG 0.500362 3_3:+61016252 Msa0462240:three_prime_UTR
TACATATCTGGAGTTGGAGG+TGG 0.503140 3_3:-61013436 None:intergenic
ATACATCATAGGATTTGGCT+TGG 0.503362 3_3:+61016210 Msa0462240:exon
TCTGGAGTTGGAGGTGGAGA+AGG 0.504411 3_3:-61013430 None:intergenic
CTGGAGTTGGAGGTGGAGAA+GGG 0.510430 3_3:-61013429 None:intergenic
GAATTTGTTCAATGCCAAAT+GGG 0.511521 3_3:-61015472 None:intergenic
AACGTCTCTGTAAAGTCGTC+CGG 0.511697 3_3:+61013705 Msa0462240:CDS
GGATAGAATTGGCGTGGATG+CGG 0.513125 3_3:-61013393 None:intergenic
CCAGCTTTGTTTGGGTGATG+GGG 0.513955 3_3:-61013553 None:intergenic
GGTAATCAGGAAGGACCACC+AGG 0.515194 3_3:-61013758 None:intergenic
CCCCATCACCCAAACAAAGC+TGG 0.526664 3_3:+61013553 Msa0462240:CDS
GTTGGAGGTGGAGAAGGGAA+TGG 0.530380 3_3:-61013424 None:intergenic
ATTCAGGTCATCCGTAAGAC+TGG 0.532385 3_3:+61014264 Msa0462240:intron
TACCTCATCATCCGCTATTG+CGG 0.534019 3_3:+61013777 Msa0462240:CDS
AACCGTGCCTGCCGCAAACA+AGG 0.534436 3_3:+61013639 Msa0462240:CDS
CAAACTCTAGAAACTCTCTC+TGG 0.537664 3_3:+61013669 Msa0462240:CDS
GTGCGGTGCTGGTCCCAACC+TGG 0.538727 3_3:+61013740 Msa0462240:CDS
TGGCGTGGATGCGGTTACGG+TGG 0.540320 3_3:-61013487 None:intergenic
AAGCATCCTTAGCATCTTCG+AGG 0.540528 3_3:-61014309 None:intergenic
ATAGATTTAAAACCATTTGG+AGG 0.543444 3_3:+61014140 Msa0462240:CDS
TTTGAAAGGATCCTTGTTTG+CGG 0.546105 3_3:-61013650 None:intergenic
GTGACATGTATACCTCCAAA+TGG 0.550224 3_3:-61014152 None:intergenic
TGCTCGTTGTTTGGAGACCA+TGG 0.558612 3_3:+61013806 Msa0462240:CDS
GGCGTGGATGCGGTTACGGT+GGG 0.560111 3_3:-61013486 None:intergenic
GGGTGCCCTCGAAGATGCTA+AGG 0.560777 3_3:+61014303 Msa0462240:CDS
GCAGAAGCCCAAAGAAATAC+GGG 0.565624 3_3:+61013608 Msa0462240:CDS
TTGCAGGCTTATATCTGTCA+AGG 0.572022 3_3:+61015444 Msa0462240:intron
CTGGAAATGGCAAACTACTT+GGG 0.572784 3_3:+61014283 Msa0462240:CDS
TACATGTCACATATAAATGC+AGG 0.573446 3_3:+61014165 Msa0462240:CDS
ATCAGGAAGGACCACCAGGT+TGG 0.575050 3_3:-61013754 None:intergenic
GGATTGAATTGGCGTGGATG+CGG 0.576414 3_3:-61013496 None:intergenic
GAGCAGCCGTCCCGCAATAG+CGG 0.581813 3_3:-61013788 None:intergenic
TATAAATTGAATTCACTGGA+TGG 0.585538 3_3:-61016245 None:intergenic
TGGGTCACCTCTGAATACTT+GGG 0.585710 3_3:-61014343 None:intergenic
ATGGTAAGTCTGTTTGGTGG+AGG 0.589868 3_3:+61013825 Msa0462240:CDS
GATTTAGACTGACGGATCGA+AGG 0.592838 3_3:-61015537 None:intergenic
TGTGCTTTGGTGGTGCAGGA+AGG 0.595048 3_3:-61013579 None:intergenic
ATATACATATCTGGAGTTGG+AGG 0.599847 3_3:-61013439 None:intergenic
ACCATGGTAAGTCTGTTTGG+TGG 0.604006 3_3:+61013822 Msa0462240:CDS
TCTCTTTGTAAGCTGTCATG+TGG 0.607011 3_3:+61013524 Msa0462240:CDS
AATTAAGGATAGAATTGGCG+TGG 0.610172 3_3:-61013399 None:intergenic
GACAGCTTACAAAGAGACTG+TGG 0.611286 3_3:-61013518 None:intergenic
TCCCGCAATAGCGGATGATG+AGG 0.621652 3_3:-61013779 None:intergenic
CCTTGAATGATTTAGACTGA+CGG 0.623941 3_3:-61015545 None:intergenic
TCCGGTTGCTTGGGTAAGTG+CGG 0.626454 3_3:+61013723 Msa0462240:CDS
AGCATCCTTAGCATCTTCGA+GGG 0.633887 3_3:-61014308 None:intergenic
TACCTGCGAGAGCAAAAGCT+CGG 0.642802 3_3:-61013922 None:intergenic
GGATGATGAGGTAATCAGGA+AGG 0.643225 3_3:-61013767 None:intergenic
TCCACCAAACAGACTTACCA+TGG 0.651181 3_3:-61013823 None:intergenic
ATTAGCTCCCAAGTATTCAG+AGG 0.657616 3_3:+61014336 Msa0462240:CDS
CATCATCCGCTATTGCGGGA+CGG 0.668576 3_3:+61013782 Msa0462240:CDS
ACAGCTTACAAAGAGACTGT+GGG 0.668910 3_3:-61013517 None:intergenic
TCTTTGTAAGCTGTCATGTG+GGG 0.668932 3_3:+61013526 Msa0462240:CDS
ACTGTGGGATTGAATTGGCG+TGG 0.696617 3_3:-61013502 None:intergenic
CGGTGCTGGTCCCAACCTGG+TGG 0.700612 3_3:+61013743 Msa0462240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATATATACATATC+TGG - chr3_3:61013451-61013470 None:intergenic 10.0%
!! CAAAATTATTATATGTATAT+TGG + chr3_3:61014204-61014223 Msa0462240:intron 10.0%
!!! TTATTTTTTGATGAATTAAT+CGG + chr3_3:61016051-61016070 Msa0462240:intron 10.0%
!!! TTTTTTTTTTTTATCTTAAC+AGG + chr3_3:61016289-61016308 Msa0462240:three_prime_UTR 10.0%
!!! TGTAATTTTCTCAAATTATT+AGG + chr3_3:61013994-61014013 Msa0462240:intron 15.0%
!! ATTTGTAATAACAAGTTAAA+TGG + chr3_3:61014628-61014647 Msa0462240:intron 15.0%
!! AAAAAAAAAAATCATTCATG+TGG - chr3_3:61016278-61016297 None:intergenic 15.0%
!! AATAAAATACAAAAACCAAA+AGG - chr3_3:61016325-61016344 None:intergenic 15.0%
!!! GGTTTTTGTATTTTATTATA+AGG + chr3_3:61016328-61016347 Msa0462240:three_prime_UTR 15.0%
!!! CTTTCTTATTGTTCTTATTT+CGG + chr3_3:61014240-61014259 Msa0462240:intron 20.0%
!! AGAAAAGAATATGAGAATTT+GGG - chr3_3:61014365-61014384 None:intergenic 20.0%
!! AAGAAAAGAATATGAGAATT+TGG - chr3_3:61014366-61014385 None:intergenic 20.0%
!! AGCATTTGTAATTAATAAAG+TGG - chr3_3:61014585-61014604 None:intergenic 20.0%
!!! TTTCAAAACACTTGTTATAT+TGG - chr3_3:61014664-61014683 None:intergenic 20.0%
!! ACAAAATTATAAGCTGATAT+TGG + chr3_3:61014881-61014900 Msa0462240:intron 20.0%
!! TTGTTTCAATTGTTATATAC+TGG + chr3_3:61016019-61016038 Msa0462240:intron 20.0%
! TGGATAATTAAGGATAGAAT+TGG - chr3_3:61013407-61013426 None:intergenic 25.0%
!! TATATATACATATCTGGAGT+TGG - chr3_3:61013445-61013464 None:intergenic 25.0%
!! GCTATAGATTTAAAACCATT+TGG + chr3_3:61014137-61014156 Msa0462240:CDS 25.0%
!! ATAGATTTAAAACCATTTGG+AGG + chr3_3:61014140-61014159 Msa0462240:CDS 25.0%
!!! GATAATAGGATATTGATTCT+AGG - chr3_3:61014397-61014416 None:intergenic 25.0%
!!! TAGTTTTTAGCAAGGATAAT+AGG - chr3_3:61014411-61014430 None:intergenic 25.0%
! AAATTTCAAGATTTGAACTC+CGG + chr3_3:61014488-61014507 Msa0462240:intron 25.0%
! ATATCAATATATGCAATGAC+CGG - chr3_3:61014510-61014529 None:intergenic 25.0%
! TTGTAATTAATAAAGTGGCA+AGG - chr3_3:61014580-61014599 None:intergenic 25.0%
!!! GTTTTTTTTTGATCCTTTTG+AGG + chr3_3:61014698-61014717 Msa0462240:intron 25.0%
!! ATAAGAATTGATTTAGCAGT+CGG - chr3_3:61014799-61014818 None:intergenic 25.0%
! AACAAAGTTGACAAAAATAG+TGG + chr3_3:61014971-61014990 Msa0462240:intron 25.0%
! ACTAGAAACTAATATGGATT+GGG + chr3_3:61015088-61015107 Msa0462240:intron 25.0%
! TTCACTAACTACCTAAATAT+GGG - chr3_3:61015200-61015219 None:intergenic 25.0%
! ATTCACTAACTACCTAAATA+TGG - chr3_3:61015201-61015220 None:intergenic 25.0%
! ATTGATGTTTGTTTAAATGC+AGG - chr3_3:61015360-61015379 None:intergenic 25.0%
! TATTTCTTTATTCACTTTGC+AGG + chr3_3:61015428-61015447 Msa0462240:intron 25.0%
! CATAGATCTCAAAAATCTAT+GGG - chr3_3:61015670-61015689 None:intergenic 25.0%
! ACATAGATCTCAAAAATCTA+TGG - chr3_3:61015671-61015690 None:intergenic 25.0%
!! TTAAATCTCAAGAGCTTTTT+GGG - chr3_3:61015825-61015844 None:intergenic 25.0%
!! TTTAAATCTCAAGAGCTTTT+TGG - chr3_3:61015826-61015845 None:intergenic 25.0%
! CTCTTGAGATTTAAATGTTT+AGG + chr3_3:61015831-61015850 Msa0462240:intron 25.0%
!!! TTATTTGATCGAGGTATTTT+AGG + chr3_3:61015854-61015873 Msa0462240:intron 25.0%
! TGTTAATACATCATAGGATT+TGG + chr3_3:61016205-61016224 Msa0462240:exon 25.0%
! TATAAATTGAATTCACTGGA+TGG - chr3_3:61016248-61016267 None:intergenic 25.0%
! TCACTATAAATTGAATTCAC+TGG - chr3_3:61016252-61016271 None:intergenic 25.0%
! GTGAATTCAATTTATAGTGA+TGG + chr3_3:61016252-61016271 Msa0462240:three_prime_UTR 25.0%
TCTCAAATTATTAGGTGTGT+AGG + chr3_3:61014002-61014021 Msa0462240:intron 30.0%
TACATGTCACATATAAATGC+AGG + chr3_3:61014165-61014184 Msa0462240:CDS 30.0%
!!! GTTACTAGTAGTTTTTAGCA+AGG - chr3_3:61014419-61014438 None:intergenic 30.0%
! TCTTGAAATTTCTAGACTCT+AGG - chr3_3:61014479-61014498 None:intergenic 30.0%
CTTCAAATACTTATACGGAA+AGG - chr3_3:61014728-61014747 None:intergenic 30.0%
!! CAGAATCTTGAGTTATTTTG+AGG - chr3_3:61014914-61014933 None:intergenic 30.0%
CACTAGAAACTAATATGGAT+TGG + chr3_3:61015087-61015106 Msa0462240:intron 30.0%
TTGAGTTAGCATTAAGAACA+TGG - chr3_3:61015161-61015180 None:intergenic 30.0%
! AATGTCACAACAAGAGATTT+TGG + chr3_3:61015258-61015277 Msa0462240:intron 30.0%
! GAATTTGTTCAATGCCAAAT+GGG - chr3_3:61015475-61015494 None:intergenic 30.0%
! ATGTTTAGGTTATTTGATCG+AGG + chr3_3:61015845-61015864 Msa0462240:intron 30.0%
ATTTGAAGGGGAAATTCTAT+TGG + chr3_3:61016112-61016131 Msa0462240:intron 30.0%
TGCTTCTGTTAATACATCAT+AGG + chr3_3:61016199-61016218 Msa0462240:CDS 30.0%
AATTAAGGATAGAATTGGCG+TGG - chr3_3:61013402-61013421 None:intergenic 35.0%
GAGAAGGGAATGGATAATTA+AGG - chr3_3:61013417-61013436 None:intergenic 35.0%
! ATATACATATCTGGAGTTGG+AGG - chr3_3:61013442-61013461 None:intergenic 35.0%
! TTTGAAAGGATCCTTGTTTG+CGG - chr3_3:61013653-61013672 None:intergenic 35.0%
!! GAGAGTTTCTAGAGTTTGAA+AGG - chr3_3:61013667-61013686 None:intergenic 35.0%
AGAGAAGAAAAATTTCGCTG+AGG + chr3_3:61013899-61013918 Msa0462240:CDS 35.0%
AATTATACGTGTGTTAGTGC+AGG - chr3_3:61013963-61013982 None:intergenic 35.0%
CAATCATGTTAGTTGAAGCA+TGG - chr3_3:61014102-61014121 None:intergenic 35.0%
ATGATTGATTGATGCATTGC+AGG + chr3_3:61014115-61014134 Msa0462240:intron 35.0%
GTCACATATAAATGCAGGTA+CGG + chr3_3:61014170-61014189 Msa0462240:intron 35.0%
! TTGTTCTTATTTCGGCATTC+AGG + chr3_3:61014248-61014267 Msa0462240:intron 35.0%
TAAGCTTAGCTAAACTGCTA+AGG - chr3_3:61014545-61014564 None:intergenic 35.0%
CCGTGCTTCAAATACTTATA+CGG - chr3_3:61014733-61014752 None:intergenic 35.0%
! CCGTATAAGTATTTGAAGCA+CGG + chr3_3:61014730-61014749 Msa0462240:intron 35.0%
ACTGAGATTCAAATCGTGAT+TGG + chr3_3:61014760-61014779 Msa0462240:intron 35.0%
AAATAGTGGCTACGAAGTTT+AGG + chr3_3:61014985-61015004 Msa0462240:intron 35.0%
!! TTTCTAGTGCGCATCTATTT+TGG - chr3_3:61015076-61015095 None:intergenic 35.0%
ATGCGCACTAGAAACTAATA+TGG + chr3_3:61015082-61015101 Msa0462240:intron 35.0%
TGAATCAACATACGATCTAC+AGG + chr3_3:61015124-61015143 Msa0462240:intron 35.0%
AACATACGATCTACAGGTAT+CGG + chr3_3:61015130-61015149 Msa0462240:intron 35.0%
TAAATATGGGAAACACGCAT+GGG - chr3_3:61015187-61015206 None:intergenic 35.0%
CTAATTGTTGCCAAAATCCA+TGG + chr3_3:61015231-61015250 Msa0462240:intron 35.0%
!! ACAACAAGAGATTTTGGTCT+TGG + chr3_3:61015264-61015283 Msa0462240:intron 35.0%
AATGATCATACCCACATTGA+TGG - chr3_3:61015317-61015336 None:intergenic 35.0%
! CGAATTTGTTCAATGCCAAA+TGG - chr3_3:61015476-61015495 None:intergenic 35.0%
! GGCATTGAACAAATTCGATT+TGG + chr3_3:61015479-61015498 Msa0462240:CDS 35.0%
CCTTGAATGATTTAGACTGA+CGG - chr3_3:61015548-61015567 None:intergenic 35.0%
!!! CATTACCTGCATTTTTTCGA+AGG + chr3_3:61015618-61015637 Msa0462240:intron 35.0%
ATCTTCCTTCGAAAAAATGC+AGG - chr3_3:61015626-61015645 None:intergenic 35.0%
!!! CATTTTTTCGAAGGAAGATG+CGG + chr3_3:61015627-61015646 Msa0462240:intron 35.0%
TTGTCAATATAGCTGTGTAG+TGG + chr3_3:61015741-61015760 Msa0462240:intron 35.0%
GTTGTAACTGATCAATGAGA+GGG - chr3_3:61015934-61015953 None:intergenic 35.0%
AGTTGTAACTGATCAATGAG+AGG - chr3_3:61015935-61015954 None:intergenic 35.0%
TTGCACGTGTACAAATTTGA+AGG + chr3_3:61016098-61016117 Msa0462240:intron 35.0%
TGCACGTGTACAAATTTGAA+GGG + chr3_3:61016099-61016118 Msa0462240:intron 35.0%
ATACATCATAGGATTTGGCT+TGG + chr3_3:61016210-61016229 Msa0462240:exon 35.0%
! TACATCATAGGATTTGGCTT+GGG + chr3_3:61016211-61016230 Msa0462240:exon 35.0%
AAGAGACTGTGGGATTGAAT+TGG - chr3_3:61013510-61013529 None:intergenic 40.0%
ACAGCTTACAAAGAGACTGT+GGG - chr3_3:61013520-61013539 None:intergenic 40.0%
TCTCTTTGTAAGCTGTCATG+TGG + chr3_3:61013524-61013543 Msa0462240:CDS 40.0%
CTCTTTGTAAGCTGTCATGT+GGG + chr3_3:61013525-61013544 Msa0462240:CDS 40.0%
TCTTTGTAAGCTGTCATGTG+GGG + chr3_3:61013526-61013545 Msa0462240:CDS 40.0%
AGCAGAAGCCCAAAGAAATA+CGG + chr3_3:61013607-61013626 Msa0462240:CDS 40.0%
! CAAACTCTAGAAACTCTCTC+TGG + chr3_3:61013669-61013688 Msa0462240:CDS 40.0%
TGGTGGAGGAGATAATAGTT+TGG + chr3_3:61013839-61013858 Msa0462240:CDS 40.0%
GTGACATGTATACCTCCAAA+TGG - chr3_3:61014155-61014174 None:intergenic 40.0%
! GTTTGCCATTTCCAGTCTTA+CGG - chr3_3:61014278-61014297 None:intergenic 40.0%
ACTGGAAATGGCAAACTACT+TGG + chr3_3:61014282-61014301 Msa0462240:CDS 40.0%
CTGGAAATGGCAAACTACTT+GGG + chr3_3:61014283-61014302 Msa0462240:CDS 40.0%
ATTAGCTCCCAAGTATTCAG+AGG + chr3_3:61014336-61014355 Msa0462240:CDS 40.0%
TCTAGACTCTAGGCTAAAAG+TGG - chr3_3:61014469-61014488 None:intergenic 40.0%
CTAAATATGGGAAACACGCA+TGG - chr3_3:61015188-61015207 None:intergenic 40.0%
CATGCGTGTTTCCCATATTT+AGG + chr3_3:61015186-61015205 Msa0462240:intron 40.0%
! GACATTGTAGCCATGGATTT+TGG - chr3_3:61015244-61015263 None:intergenic 40.0%
TTGTTGTGACATTGTAGCCA+TGG - chr3_3:61015251-61015270 None:intergenic 40.0%
! ATCATACCCACATTGATGGT+AGG - chr3_3:61015313-61015332 None:intergenic 40.0%
TTGCAGGCTTATATCTGTCA+AGG + chr3_3:61015444-61015463 Msa0462240:intron 40.0%
CCGTCAGTCTAAATCATTCA+AGG + chr3_3:61015545-61015564 Msa0462240:CDS 40.0%
AGTGGTACAGTTTAGTGTAG+CGG + chr3_3:61015759-61015778 Msa0462240:intron 40.0%
GCACGTGTACAAATTTGAAG+GGG + chr3_3:61016100-61016119 Msa0462240:intron 40.0%
TATTCGAGCCTGCTTAAACA+TGG - chr3_3:61016159-61016178 None:intergenic 40.0%
! ACAGGTGTGTATATGCCTTT+TGG + chr3_3:61016307-61016326 Msa0462240:three_prime_UTR 40.0%
! TACATATCTGGAGTTGGAGG+TGG - chr3_3:61013439-61013458 None:intergenic 45.0%
GACAGCTTACAAAGAGACTG+TGG - chr3_3:61013521-61013540 None:intergenic 45.0%
!! GAAGGAAGCCAGCTTTGTTT+GGG - chr3_3:61013564-61013583 None:intergenic 45.0%
GCAGAAGCCCAAAGAAATAC+GGG + chr3_3:61013608-61013627 Msa0462240:CDS 45.0%
GTGCACACCCGTATTTCTTT+GGG - chr3_3:61013618-61013637 None:intergenic 45.0%
GACTTTACAGAGACGTTTGG+AGG - chr3_3:61013702-61013721 None:intergenic 45.0%
GACGACTTTACAGAGACGTT+TGG - chr3_3:61013705-61013724 None:intergenic 45.0%
AACGTCTCTGTAAAGTCGTC+CGG + chr3_3:61013705-61013724 Msa0462240:CDS 45.0%
GGATGATGAGGTAATCAGGA+AGG - chr3_3:61013770-61013789 None:intergenic 45.0%
! TAGCGGATGATGAGGTAATC+AGG - chr3_3:61013774-61013793 None:intergenic 45.0%
TACCTCATCATCCGCTATTG+CGG + chr3_3:61013777-61013796 Msa0462240:CDS 45.0%
GAGACCATGGTAAGTCTGTT+TGG + chr3_3:61013819-61013838 Msa0462240:CDS 45.0%
ACCATGGTAAGTCTGTTTGG+TGG + chr3_3:61013822-61013841 Msa0462240:CDS 45.0%
TCCACCAAACAGACTTACCA+TGG - chr3_3:61013826-61013845 None:intergenic 45.0%
! ATGGTAAGTCTGTTTGGTGG+AGG + chr3_3:61013825-61013844 Msa0462240:CDS 45.0%
GTTTGGATGCTCTTGCTTTG+AGG + chr3_3:61013856-61013875 Msa0462240:CDS 45.0%
!! TGCTCTTGCTTTGAGGAAGA+AGG + chr3_3:61013863-61013882 Msa0462240:CDS 45.0%
CATGTTAGTTGAAGCATGGC+TGG - chr3_3:61014098-61014117 None:intergenic 45.0%
ATTCAGGTCATCCGTAAGAC+TGG + chr3_3:61014264-61014283 Msa0462240:intron 45.0%
GTCATCCGTAAGACTGGAAA+TGG + chr3_3:61014270-61014289 Msa0462240:CDS 45.0%
AGCATCCTTAGCATCTTCGA+GGG - chr3_3:61014311-61014330 None:intergenic 45.0%
AAGCATCCTTAGCATCTTCG+AGG - chr3_3:61014312-61014331 None:intergenic 45.0%
TGGGTCACCTCTGAATACTT+GGG - chr3_3:61014346-61014365 None:intergenic 45.0%
TTGGGTCACCTCTGAATACT+TGG - chr3_3:61014347-61014366 None:intergenic 45.0%
ACTCTAGGCTAAAAGTGGCA+AGG - chr3_3:61014464-61014483 None:intergenic 45.0%
GCAGTTTAGCTAAGCTTACG+AGG + chr3_3:61014547-61014566 Msa0462240:intron 45.0%
ACGGAAAGGTGAACCTCAAA+AGG - chr3_3:61014714-61014733 None:intergenic 45.0%
TTGCCTACCTACCATCAATG+TGG + chr3_3:61015303-61015322 Msa0462240:intron 45.0%
TGCCTACCTACCATCAATGT+GGG + chr3_3:61015304-61015323 Msa0462240:intron 45.0%
! TACCCACATTGATGGTAGGT+AGG - chr3_3:61015309-61015328 None:intergenic 45.0%
TGCAGGCACAACAAATACAC+AGG - chr3_3:61015343-61015362 None:intergenic 45.0%
!! CAAATTCGATTTGGCAGAGC+AGG + chr3_3:61015488-61015507 Msa0462240:CDS 45.0%
! GATTTAGACTGACGGATCGA+AGG - chr3_3:61015540-61015559 None:intergenic 45.0%
GAAATATGACAGCATGCGTG+AGG - chr3_3:61015910-61015929 None:intergenic 45.0%
CTCCTCATCCATGTTTAAGC+AGG + chr3_3:61016148-61016167 Msa0462240:intron 45.0%
AGCCTGCTTAAACATGGATG+AGG - chr3_3:61016153-61016172 None:intergenic 45.0%
GGCTCGAATAACAAAGCTTC+AGG + chr3_3:61016169-61016188 Msa0462240:intron 45.0%
!! AATAAATTAATAATGATTTA+CGG + chr3_3:61015389-61015408 Msa0462240:intron 5.0%
GGATAGAATTGGCGTGGATG+CGG - chr3_3:61013396-61013415 None:intergenic 50.0%
AATTGGCGTGGATGCGGTTA+CGG - chr3_3:61013493-61013512 None:intergenic 50.0%
GGATTGAATTGGCGTGGATG+CGG - chr3_3:61013499-61013518 None:intergenic 50.0%
ACTGTGGGATTGAATTGGCG+TGG - chr3_3:61013505-61013524 None:intergenic 50.0%
!! CCAGCTTTGTTTGGGTGATG+GGG - chr3_3:61013556-61013575 None:intergenic 50.0%
!! GCCAGCTTTGTTTGGGTGAT+GGG - chr3_3:61013557-61013576 None:intergenic 50.0%
!! AGCCAGCTTTGTTTGGGTGA+TGG - chr3_3:61013558-61013577 None:intergenic 50.0%
!! GGAAGGAAGCCAGCTTTGTT+TGG - chr3_3:61013565-61013584 None:intergenic 50.0%
GGTGCACACCCGTATTTCTT+TGG - chr3_3:61013619-61013638 None:intergenic 50.0%
! AAAGGATCCTTGTTTGCGGC+AGG - chr3_3:61013649-61013668 None:intergenic 50.0%
TGTAAAGTCGTCCGGTTGCT+TGG + chr3_3:61013713-61013732 Msa0462240:CDS 50.0%
GTAAAGTCGTCCGGTTGCTT+GGG + chr3_3:61013714-61013733 Msa0462240:CDS 50.0%
ACCTCATCATCCGCTATTGC+GGG + chr3_3:61013778-61013797 Msa0462240:CDS 50.0%
TGCTCGTTGTTTGGAGACCA+TGG + chr3_3:61013806-61013825 Msa0462240:CDS 50.0%
TACCTGCGAGAGCAAAAGCT+CGG - chr3_3:61013925-61013944 None:intergenic 50.0%
CACACACAGAATCAGTGGTC+TGG - chr3_3:61014071-61014090 None:intergenic 50.0%
CTGTCAAGGTGATGCCCATT+TGG + chr3_3:61015458-61015477 Msa0462240:CDS 50.0%
GTTGGAGGTGGAGAAGGGAA+TGG - chr3_3:61013427-61013446 None:intergenic 55.0%
CTGGAGTTGGAGGTGGAGAA+GGG - chr3_3:61013432-61013451 None:intergenic 55.0%
! TCTGGAGTTGGAGGTGGAGA+AGG - chr3_3:61013433-61013452 None:intergenic 55.0%
CCCCATCACCCAAACAAAGC+TGG + chr3_3:61013553-61013572 Msa0462240:CDS 55.0%
!! TGTGCTTTGGTGGTGCAGGA+AGG - chr3_3:61013582-61013601 None:intergenic 55.0%
CTTCTGCTGCTGCTGTGCTT+TGG - chr3_3:61013595-61013614 None:intergenic 55.0%
! ATCCTTGTTTGCGGCAGGCA+CGG - chr3_3:61013644-61013663 None:intergenic 55.0%
TCCGGTTGCTTGGGTAAGTG+CGG + chr3_3:61013723-61013742 Msa0462240:CDS 55.0%
ACCGCACTTACCCAAGCAAC+CGG - chr3_3:61013727-61013746 None:intergenic 55.0%
TCAGGAAGGACCACCAGGTT+GGG - chr3_3:61013756-61013775 None:intergenic 55.0%
ATCAGGAAGGACCACCAGGT+TGG - chr3_3:61013757-61013776 None:intergenic 55.0%
GGTAATCAGGAAGGACCACC+AGG - chr3_3:61013761-61013780 None:intergenic 55.0%
!! TCCCGCAATAGCGGATGATG+AGG - chr3_3:61013782-61013801 None:intergenic 55.0%
CATCATCCGCTATTGCGGGA+CGG + chr3_3:61013782-61013801 Msa0462240:CDS 55.0%
CGCGCTATGAAGCACAGACA+CGG - chr3_3:61014039-61014058 None:intergenic 55.0%
CGTGAGGCAAAGCAAGAGAG+AGG - chr3_3:61015894-61015913 None:intergenic 55.0%
!! CTGCTGTGCTTTGGTGGTGC+AGG - chr3_3:61013586-61013605 None:intergenic 60.0%
CTGCTGCTGCTGTGCTTTGG+TGG - chr3_3:61013592-61013611 None:intergenic 60.0%
TTGTTTGCGGCAGGCACGGT+TGG - chr3_3:61013640-61013659 None:intergenic 60.0%
AACCGTGCCTGCCGCAAACA+AGG + chr3_3:61013639-61013658 Msa0462240:CDS 60.0%
TGCTTGGGTAAGTGCGGTGC+TGG + chr3_3:61013729-61013748 Msa0462240:CDS 60.0%
GCGCGCACACACAGAATCAG+TGG - chr3_3:61014076-61014095 None:intergenic 60.0%
GGGTGCCCTCGAAGATGCTA+AGG + chr3_3:61014303-61014322 Msa0462240:CDS 60.0%
GGCGTGGATGCGGTTACGGT+GGG - chr3_3:61013489-61013508 None:intergenic 65.0%
TGGCGTGGATGCGGTTACGG+TGG - chr3_3:61013490-61013509 None:intergenic 65.0%
GAGCAGCCGTCCCGCAATAG+CGG - chr3_3:61013791-61013810 None:intergenic 65.0%
CGGGACGGCTGCTCGTTGTT+TGG + chr3_3:61013797-61013816 Msa0462240:CDS 65.0%
! GGCCGAGCTTTTGCTCTCGC+AGG + chr3_3:61013920-61013939 Msa0462240:CDS 65.0%
!! GTGCGGTGCTGGTCCCAACC+TGG + chr3_3:61013740-61013759 Msa0462240:CDS 70.0%
!! CGGTGCTGGTCCCAACCTGG+TGG + chr3_3:61013743-61013762 Msa0462240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61013377 61016411 61013377 ID=Msa0462240;Name=Msa0462240
chr3_3 mRNA 61013377 61016411 61013377 ID=Msa0462240-mRNA-1;Parent=Msa0462240;Name=Msa0462240-mRNA-1;_AED=0.19;_eAED=0.19;_QI=103|1|1|1|1|1|5|191|255
chr3_3 exon 61013377 61013941 61013377 ID=Msa0462240-mRNA-1:exon:12850;Parent=Msa0462240-mRNA-1
chr3_3 exon 61014137 61014186 61014137 ID=Msa0462240-mRNA-1:exon:12851;Parent=Msa0462240-mRNA-1
chr3_3 exon 61014270 61014357 61014270 ID=Msa0462240-mRNA-1:exon:12852;Parent=Msa0462240-mRNA-1
chr3_3 exon 61015450 61015566 61015450 ID=Msa0462240-mRNA-1:exon:12853;Parent=Msa0462240-mRNA-1
chr3_3 exon 61016170 61016411 61016170 ID=Msa0462240-mRNA-1:exon:12854;Parent=Msa0462240-mRNA-1
chr3_3 five_prime_UTR 61013377 61013479 61013377 ID=Msa0462240-mRNA-1:five_prime_utr;Parent=Msa0462240-mRNA-1
chr3_3 CDS 61013480 61013941 61013480 ID=Msa0462240-mRNA-1:cds;Parent=Msa0462240-mRNA-1
chr3_3 CDS 61014137 61014186 61014137 ID=Msa0462240-mRNA-1:cds;Parent=Msa0462240-mRNA-1
chr3_3 CDS 61014270 61014357 61014270 ID=Msa0462240-mRNA-1:cds;Parent=Msa0462240-mRNA-1
chr3_3 CDS 61015450 61015566 61015450 ID=Msa0462240-mRNA-1:cds;Parent=Msa0462240-mRNA-1
chr3_3 CDS 61016170 61016220 61016170 ID=Msa0462240-mRNA-1:cds;Parent=Msa0462240-mRNA-1
chr3_3 three_prime_UTR 61016221 61016411 61016221 ID=Msa0462240-mRNA-1:three_prime_utr;Parent=Msa0462240-mRNA-1
Gene Sequence

>Msa0462240

ATGAATCCCACCGTAACCGCATCCACGCCAATTCAATCCCACAGTCTCTTTGTAAGCTGTCATGTGGGGACATCCCCATCACCCAAACAAAGCTGGCTTCCTTCCTGCACCACCAAAGCACAGCAGCAGCAGAAGCCCAAAGAAATACGGGTGTGCACCAACCGTGCCTGCCGCAAACAAGGATCCTTTCAAACTCTAGAAACTCTCTCTGGTATCGCTCCTCCAAACGTCTCTGTAAAGTCGTCCGGTTGCTTGGGTAAGTGCGGTGCTGGTCCCAACCTGGTGGTCCTTCCTGATTACCTCATCATCCGCTATTGCGGGACGGCTGCTCGTTGTTTGGAGACCATGGTAAGTCTGTTTGGTGGAGGAGATAATAGTTTGGATGCTCTTGCTTTGAGGAAGAAGGCTGATGTTGAGTTAGAGAAGAAAAATTTCGCTGAGGCCGAGCTTTTGCTCTCGCAGGCTATAGATTTAAAACCATTTGGAGGTATACATGTCACATATAAATGCAGGTCATCCGTAAGACTGGAAATGGCAAACTACTTGGGTGCCCTCGAAGATGCTAAGGATGCTTTGATATTAGCTCCCAAGTATTCAGAGGCTTATATCTGTCAAGGTGATGCCCATTTGGCATTGAACAAATTCGATTTGGCAGAGCAGGCATATTTAGCATGTTTAGATATAGATCCTTCGATCCGTCAGTCTAAATCATTCAAGGCTCGAATAACAAAGCTTCAGGAAAAACTTGCTTCTGTTAATACATCATAG

Protein sequence

>Msa0462240

MNPTVTASTPIQSHSLFVSCHVGTSPSPKQSWLPSCTTKAQQQQKPKEIRVCTNRACRKQGSFQTLETLSGIAPPNVSVKSSGCLGKCGAGPNLVVLPDYLIIRYCGTAARCLETMVSLFGGGDNSLDALALRKKADVELEKKNFAEAELLLSQAIDLKPFGGIHVTYKCRSSVRLEMANYLGALEDAKDALILAPKYSEAYICQGDAHLALNKFDLAEQAYLACLDIDPSIRQSKSFKARITKLQEKLASVNTS*