AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706860 MtrunA17_Chr8g0389101 97.544 285 7 0 1 285 1 285 0.0 564
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706860 AT3G10670.1 71.888 249 70 0 34 282 89 337 2.87e-133 381
Msa0706860 AT5G06530.3 29.817 218 132 6 27 230 147 357 6.77e-12 66.2
Msa0706860 AT5G06530.2 29.358 218 133 6 27 230 147 357 6.90e-12 66.2
Msa0706860 AT5G06530.1 29.358 218 133 6 27 230 147 357 6.90e-12 66.2

Find 98 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTAGATTCAACGATTT+TGG 0.142242 4_4:+80069820 None:intergenic
GATCTTGCAGCTTGCAGTTT+TGG 0.164666 4_4:-80068756 Msa0706860:CDS
ATCCCCTTCAAGATCATAAT+TGG 0.204225 4_4:-80066832 Msa0706860:three_prime_UTR
CAATCACCTGTTGCAATTCC+TGG 0.224835 4_4:-80069587 Msa0706860:CDS
TTTGAAACCTTTAATCATTC+TGG 0.229420 4_4:-80066708 Msa0706860:three_prime_UTR
CCTTCAAGGGCTCTTTCTTC+AGG 0.248911 4_4:+80069626 None:intergenic
TGTTCAGTAGTTGTATCTTA+TGG 0.272068 4_4:-80066628 Msa0706860:three_prime_UTR
TTCTTCTGCAAGGATGAGTT+TGG 0.292197 4_4:-80066599 Msa0706860:three_prime_UTR
AGGGGAAAATTTGCTTGAAA+TGG 0.308468 4_4:-80069651 Msa0706860:CDS
AAATGATCAATTTCTTGTTA+TGG 0.315799 4_4:-80069558 Msa0706860:CDS
CCCAGATGACAGTACTGTTC+TGG 0.321843 4_4:-80066656 Msa0706860:three_prime_UTR
ACCTCAAGGGGTCCAAGTTC+AGG 0.361866 4_4:+80069503 None:intergenic
TGAAATGGTGTGGCTGGTTT+CGG 0.362469 4_4:-80066899 Msa0706860:three_prime_UTR
TTGCGGCGAGTGTGTGATTT+GGG 0.362619 4_4:+80069905 None:intergenic
ATTAACGCCGCGGAGAATTT+CGG 0.363663 4_4:+80069799 None:intergenic
GAAATTTATTGCCTCCTTAC+CGG 0.363979 4_4:-80066576 Msa0706860:three_prime_UTR
CCGCAAATTCGCCTGCTTTG+CGG 0.385979 4_4:-80069888 Msa0706860:CDS
CCCAGAACAGTACTGTCATC+TGG 0.406372 4_4:+80066655 None:intergenic
GGAGAAGAACGGAATTGAAA+TGG 0.406711 4_4:+80069926 None:intergenic
TTTGCGGCGAGTGTGTGATT+TGG 0.406874 4_4:+80069904 None:intergenic
TTTCTGACTTTGTTGTGAAA+TGG 0.406953 4_4:-80066914 Msa0706860:three_prime_UTR
GATTGGATGTTGATGCGCTC+AGG 0.409831 4_4:-80068697 Msa0706860:CDS
CCACTAGTAACTTCATAATC+TGG 0.412502 4_4:+80069689 None:intergenic
CTCGAAGATCGTTGACTTGG+AGG 0.414656 4_4:+80069843 None:intergenic
TCAAGATCATAATTGGGAAT+AGG 0.414993 4_4:-80066825 Msa0706860:three_prime_UTR
CACTTTCGCTAAGGTTCTTG+TGG 0.418543 4_4:-80069717 Msa0706860:CDS
CCGCAAAGCAGGCGAATTTG+CGG 0.425082 4_4:+80069888 None:intergenic
TCTTCTGCAAGGATGAGTTT+GGG 0.425219 4_4:-80066598 Msa0706860:three_prime_UTR
AAACTTGGTCTTCCTGAACT+TGG 0.426220 4_4:-80069515 Msa0706860:CDS
GGTGCTCGCCGCCGCAAAGC+AGG 0.429445 4_4:+80069877 None:intergenic
ACCCTCCCATGTCCATGTTA+TGG 0.431294 4_4:-80068585 Msa0706860:intron
ACATTTCTATTGAGAAAGTC+AGG 0.433555 4_4:+80068818 None:intergenic
ATTCCCAATTATGATCTTGA+AGG 0.435875 4_4:+80066828 None:intergenic
CAATTATACTAGTACGCTTC+CGG 0.436406 4_4:+80066557 None:intergenic
CCAGATGACAGTACTGTTCT+GGG 0.442968 4_4:-80066655 Msa0706860:three_prime_UTR
AGGCGAAATTCACGCTATCA+TGG 0.454010 4_4:-80069762 Msa0706860:CDS
TTGTTGTGAAATGGTGTGGC+TGG 0.454026 4_4:-80066905 Msa0706860:three_prime_UTR
AACTCATGAAAAGACCTTCA+AGG 0.456874 4_4:+80069612 None:intergenic
AATGTCAACGAAGGGTTTAG+TGG 0.459977 4_4:-80068800 Msa0706860:CDS
ACTTTCGCTAAGGTTCTTGT+GGG 0.463802 4_4:-80069716 Msa0706860:CDS
AAGGACAGGCGACCTATCTA+TGG 0.465705 4_4:-80067006 Msa0706860:CDS
GAAACACCAGGAATTGCAAC+AGG 0.465860 4_4:+80069581 None:intergenic
ATCATCAACAGAGAATTCTC+TGG 0.472195 4_4:+80068641 None:intergenic
GGATGAAATTGATTCGGGAT+TGG 0.478013 4_4:-80068714 Msa0706860:CDS
CCTGAAGAAAGAGCCCTTGA+AGG 0.481223 4_4:-80069626 Msa0706860:CDS
GACTTTGTTGTGAAATGGTG+TGG 0.485720 4_4:-80066909 Msa0706860:three_prime_UTR
TGAGGCAGATGGATATGAAC+TGG 0.490578 4_4:-80066973 Msa0706860:CDS
TTGTTATGGCTTATAATGCT+CGG 0.498223 4_4:-80069544 Msa0706860:CDS
TCCCCTTCAAGATCATAATT+GGG 0.504240 4_4:-80066831 Msa0706860:three_prime_UTR
TCCTGAACTTGGACCCCTTG+AGG 0.506534 4_4:-80069504 Msa0706860:intron
TGGCTCGAAGATCGTTGACT+TGG 0.513953 4_4:+80069840 None:intergenic
CAAATTCGCCTGCTTTGCGG+CGG 0.518445 4_4:-80069885 Msa0706860:CDS
TGTTGATGCGCTCAGGGATG+TGG 0.524984 4_4:-80068690 Msa0706860:CDS
TTCCCAATTATGATCTTGAA+GGG 0.531251 4_4:+80066829 None:intergenic
TGGTAAAAGCACTTTCGCTA+AGG 0.531262 4_4:-80069726 Msa0706860:CDS
TACATAATTAGATGAGATGA+AGG 0.533030 4_4:-80066799 Msa0706860:three_prime_UTR
CTCAATAGAAATGTCAACGA+AGG 0.535504 4_4:-80068809 Msa0706860:CDS
TCATCAACAGAGAATTCTCT+GGG 0.539796 4_4:+80068642 None:intergenic
CAATTGCATCTACCATAGAT+AGG 0.540712 4_4:+80066994 None:intergenic
AACGGAAGAATTGCAAGGAC+AGG 0.551372 4_4:-80067020 Msa0706860:CDS
ACTCATGAAAAGACCTTCAA+GGG 0.552552 4_4:+80069613 None:intergenic
ATCTATGGTAGATGCAATTG+AGG 0.552780 4_4:-80066991 Msa0706860:CDS
GACTTGGAGGAGGGGAACCT+CGG 0.553003 4_4:+80069856 None:intergenic
AAATGAATAATGAACCTCAA+GGG 0.553158 4_4:+80069490 None:intergenic
TCAATAGAAATGTCAACGAA+GGG 0.553262 4_4:-80068808 Msa0706860:CDS
CCAGAACAGTACTGTCATCT+GGG 0.554079 4_4:+80066656 None:intergenic
TGCTGTCAAGTTGCACAAGT+TGG 0.555095 4_4:-80066866 Msa0706860:three_prime_UTR
TGTTGATGATTACTCACTAT+CGG 0.557313 4_4:-80068628 Msa0706860:CDS
ATACTAGTACGCTTCCGGTA+AGG 0.557668 4_4:+80066562 None:intergenic
GAAGATCGTTGACTTGGAGG+AGG 0.561738 4_4:+80069846 None:intergenic
GGCGAAATTCACGCTATCAT+GGG 0.562057 4_4:-80069761 Msa0706860:CDS
AAAGAATAGCGTAGTAGTGA+TGG 0.562949 4_4:-80069969 Msa0706860:exon
AATTGATCATTTGAAACACC+AGG 0.564779 4_4:+80069569 None:intergenic
GTAGATGCAATTGAGGCAGA+TGG 0.567240 4_4:-80066984 Msa0706860:CDS
AACTTACCATAACATGGACA+TGG 0.572749 4_4:+80068579 None:intergenic
AAGATCGTTGACTTGGAGGA+GGG 0.579227 4_4:+80069847 None:intergenic
ATGGAATATATTCTTCTGCA+AGG 0.584240 4_4:-80066609 Msa0706860:three_prime_UTR
TTCACAACAAAGTCAGAAAG+CGG 0.586800 4_4:+80066918 None:intergenic
ATTGGATGTTGATGCGCTCA+GGG 0.588735 4_4:-80068696 Msa0706860:CDS
ACCATAACATGGACATGGGA+GGG 0.592038 4_4:+80068584 None:intergenic
CTTTGCGGCGGCGAGCACCG+AGG 0.592980 4_4:-80069873 Msa0706860:CDS
AATGCTCGGAGAAAGAAACT+TGG 0.594310 4_4:-80069530 Msa0706860:CDS
AGATCGTTGACTTGGAGGAG+GGG 0.602773 4_4:+80069848 None:intergenic
AATGAATAATGAACCTCAAG+GGG 0.611116 4_4:+80069491 None:intergenic
CTAGTACGCTTCCGGTAAGG+AGG 0.620409 4_4:+80066565 None:intergenic
CCAGATTATGAAGTTACTAG+TGG 0.621960 4_4:-80069689 Msa0706860:CDS
TACCATAACATGGACATGGG+AGG 0.624925 4_4:+80068583 None:intergenic
TCCCAATTATGATCTTGAAG+GGG 0.626342 4_4:+80066830 None:intergenic
CTTCTAAACTATCAGGACAA+CGG 0.631876 4_4:-80067038 Msa0706860:intron
ACTTACCATAACATGGACAT+GGG 0.633255 4_4:+80068580 None:intergenic
GCTCAGGGATGTGGCAAGTG+CGG 0.643242 4_4:-80068681 Msa0706860:CDS
GTCAACGAAGGGTTTAGTGG+AGG 0.664376 4_4:-80068797 Msa0706860:CDS
AGGACAACGGAAGAATTGCA+AGG 0.667405 4_4:-80067025 Msa0706860:CDS
TGTGTGATTTGGGAGAAGAA+CGG 0.680750 4_4:+80069915 None:intergenic
GTTAATCTCACTATCAACAG+AGG 0.703089 4_4:-80069782 Msa0706860:CDS
TGATAGTGAGATTAACGCCG+CGG 0.730942 4_4:+80069789 None:intergenic
CATCAACAGAGAATTCTCTG+GGG 0.787412 4_4:+80068643 None:intergenic
TCTAATGCCGAAATTCTCCG+CGG 0.794861 4_4:-80069806 Msa0706860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAGAAAATTAGTAAAAA+AGG + chr4_4:80068310-80068329 None:intergenic 15.0%
!!! TATTTTATTTTTTGTGGTAA+TGG + chr4_4:80068445-80068464 None:intergenic 15.0%
!!! CCATTTTATTTTATTTTTTG+TGG + chr4_4:80068451-80068470 None:intergenic 15.0%
!! CCACAAAAAATAAAATAAAA+TGG - chr4_4:80068448-80068467 Msa0706860:intron 15.0%
!! AAATGATCAATTTCTTGTTA+TGG - chr4_4:80066975-80066994 Msa0706860:CDS 20.0%
!!! GACTTATTTTAGCTTATTTA+TGG - chr4_4:80067229-80067248 Msa0706860:intron 20.0%
!!! TATTTTGGATGAAATTGATT+CGG - chr4_4:80067813-80067832 Msa0706860:intron 20.0%
!! CTAAATCTATCTAAATAGTT+AGG + chr4_4:80068612-80068631 None:intergenic 20.0%
!! AACTATTTAGATAGATTTAG+AGG - chr4_4:80068612-80068631 Msa0706860:CDS 20.0%
!!! AATGTTTTGTTTAATGGTTT+AGG - chr4_4:80068944-80068963 Msa0706860:intron 20.0%
!! TACATTATATGCTCATTTAT+TGG - chr4_4:80069137-80069156 Msa0706860:intron 20.0%
!!! ACCTTTTTAAATGAAATCAA+TGG + chr4_4:80069338-80069357 None:intergenic 20.0%
!!! ATTTCATTTAAAAAGGTACA+TGG - chr4_4:80069341-80069360 Msa0706860:intron 20.0%
!! TGATAGTTTAGAAGAAAAAA+AGG + chr4_4:80069489-80069508 None:intergenic 20.0%
!!! TTTTTTTCTTCTAAACTATC+AGG - chr4_4:80069488-80069507 Msa0706860:intron 20.0%
! ATAGAGAGAGAGAAAAAAAA+AGG - chr4_4:80066510-80066529 Msa0706860:three_prime_UTR 25.0%
! AAATGAATAATGAACCTCAA+GGG + chr4_4:80067046-80067065 None:intergenic 25.0%
! TAAATGAATAATGAACCTCA+AGG + chr4_4:80067047-80067066 None:intergenic 25.0%
! AATGATTCTCCAAAATATCA+AGG + chr4_4:80067189-80067208 None:intergenic 25.0%
! AAGTCAGAAACCATAAAAAA+GGG + chr4_4:80067624-80067643 None:intergenic 25.0%
!!! GCAGTGTTTTTCTTATTTAA+TGG - chr4_4:80067666-80067685 Msa0706860:intron 25.0%
!!! ATTTTGGATGAAATTGATTC+GGG - chr4_4:80067814-80067833 Msa0706860:intron 25.0%
!!! GTTTTTAACTTACCATAACA+TGG + chr4_4:80067963-80067982 None:intergenic 25.0%
!! ATTCTAAGTTTTCAACTTGA+AGG - chr4_4:80068004-80068023 Msa0706860:intron 25.0%
!! TTCTAAGTTTTCAACTTGAA+GGG - chr4_4:80068005-80068024 Msa0706860:intron 25.0%
! ATGTATATACTTGCATCTTA+TGG - chr4_4:80068261-80068280 Msa0706860:intron 25.0%
! TGTATATACTTGCATCTTAT+GGG - chr4_4:80068262-80068281 Msa0706860:intron 25.0%
!! TTTGAAATTGATGAATGCTT+TGG - chr4_4:80068398-80068417 Msa0706860:intron 25.0%
! TTGAAATTGATGAATGCTTT+GGG - chr4_4:80068399-80068418 Msa0706860:intron 25.0%
! TATGATAGTCTAATAGTTAG+AGG - chr4_4:80068565-80068584 Msa0706860:intron 25.0%
!!! GTTCTGAATGTTTTGTTTAA+TGG - chr4_4:80068938-80068957 Msa0706860:intron 25.0%
!!! AGATTGCTTTTCTTAGAAAA+TGG - chr4_4:80069172-80069191 Msa0706860:intron 25.0%
!! TTTTCTTAGAAAATGGATGT+AGG - chr4_4:80069179-80069198 Msa0706860:intron 25.0%
! ACGTTAAAATAAAATGTGAG+AGG + chr4_4:80069214-80069233 None:intergenic 25.0%
! AACTAAAATTGCAAGTTAGT+GGG + chr4_4:80069310-80069329 None:intergenic 25.0%
!!! GCCATTGATTTCATTTAAAA+AGG - chr4_4:80069334-80069353 Msa0706860:intron 25.0%
!! TTTTCATACACTGTCTATAA+CGG + chr4_4:80069426-80069445 None:intergenic 25.0%
! TACATAATTAGATGAGATGA+AGG - chr4_4:80069734-80069753 Msa0706860:CDS 25.0%
!! TTTGAAACCTTTAATCATTC+TGG - chr4_4:80069825-80069844 Msa0706860:CDS 25.0%
! CAAAAAACCAGAATGATTAA+AGG + chr4_4:80069835-80069854 None:intergenic 25.0%
!!! TCATTCTGGTTTTTTGATAT+TGG - chr4_4:80069839-80069858 Msa0706860:CDS 25.0%
! AATTGATCATTTGAAACACC+AGG + chr4_4:80066967-80066986 None:intergenic 30.0%
TTGTTATGGCTTATAATGCT+CGG - chr4_4:80066989-80067008 Msa0706860:CDS 30.0%
AATGAATAATGAACCTCAAG+GGG + chr4_4:80067045-80067064 None:intergenic 30.0%
! CACATTTTACCACAATATCA+AGG + chr4_4:80067087-80067106 None:intergenic 30.0%
CTTGATATTGTGGTAAAATG+TGG - chr4_4:80067085-80067104 Msa0706860:intron 30.0%
CCAAAATATCAAGGATTATG+AGG + chr4_4:80067180-80067199 None:intergenic 30.0%
! CCTCATAATCCTTGATATTT+TGG - chr4_4:80067177-80067196 Msa0706860:intron 30.0%
ATCATTGTTAAAGCCTTGAT+TGG - chr4_4:80067203-80067222 Msa0706860:intron 30.0%
AAAATAAGTCGATCCAATCA+AGG + chr4_4:80067219-80067238 None:intergenic 30.0%
AAGCTATCTTGGATAACTTA+GGG + chr4_4:80067335-80067354 None:intergenic 30.0%
TAAGCTATCTTGGATAACTT+AGG + chr4_4:80067336-80067355 None:intergenic 30.0%
!!! GTTGTTTTGATAAGCTATCT+TGG + chr4_4:80067346-80067365 None:intergenic 30.0%
! TAAACAACGTATAGCTTGTA+TGG - chr4_4:80067395-80067414 Msa0706860:intron 30.0%
! TTTTGCGACTTAATTGGATT+TGG - chr4_4:80067572-80067591 Msa0706860:intron 30.0%
TTTGCGACTTAATTGGATTT+GGG - chr4_4:80067573-80067592 Msa0706860:intron 30.0%
CAAGTCAGAAACCATAAAAA+AGG + chr4_4:80067625-80067644 None:intergenic 30.0%
ACATTTCTATTGAGAAAGTC+AGG + chr4_4:80067718-80067737 None:intergenic 30.0%
TCAATAGAAATGTCAACGAA+GGG - chr4_4:80067725-80067744 Msa0706860:intron 30.0%
!! TGTTGATGATTACTCACTAT+CGG - chr4_4:80067905-80067924 Msa0706860:intron 30.0%
!!! TCCTTAAGTTTTGAGGAAAA+TGG - chr4_4:80068083-80068102 Msa0706860:intron 30.0%
!!! CCTTAAGTTTTGAGGAAAAT+GGG - chr4_4:80068084-80068103 Msa0706860:intron 30.0%
!!! CTTAAGTTTTGAGGAAAATG+GGG - chr4_4:80068085-80068104 Msa0706860:intron 30.0%
! ATGAAGATTTTACAGCTTGT+TGG - chr4_4:80068227-80068246 Msa0706860:intron 30.0%
! AATTTTATCACGACATCACT+TGG + chr4_4:80068380-80068399 None:intergenic 30.0%
TATTGTCTTCTCAACTATAG+GGG + chr4_4:80068478-80068497 None:intergenic 30.0%
CTATTGTCTTCTCAACTATA+GGG + chr4_4:80068479-80068498 None:intergenic 30.0%
TCTATTGTCTTCTCAACTAT+AGG + chr4_4:80068480-80068499 None:intergenic 30.0%
TAATAGTTAGAGGTAGATCA+AGG - chr4_4:80068575-80068594 Msa0706860:intron 30.0%
TATCTAAATAGTTAGGCCAA+TGG + chr4_4:80068605-80068624 None:intergenic 30.0%
TTCCATTTCCTAAAGAAAGT+AGG - chr4_4:80068734-80068753 Msa0706860:CDS 30.0%
AGAAAAGACCTACTTTCTTT+AGG + chr4_4:80068745-80068764 None:intergenic 30.0%
GCTATAACATTATCCTTTGA+GGG + chr4_4:80068789-80068808 None:intergenic 30.0%
TGCTATAACATTATCCTTTG+AGG + chr4_4:80068790-80068809 None:intergenic 30.0%
! ATGATTTTCAATTTACTCCG+TGG - chr4_4:80068849-80068868 Msa0706860:CDS 30.0%
CCAATACTATGAATTAACCA+CGG + chr4_4:80068869-80068888 None:intergenic 30.0%
AAGTGTGTGTTATGTAATAC+AGG + chr4_4:80068896-80068915 None:intergenic 30.0%
GTAGCTAGCAGAAAATATAT+GGG + chr4_4:80068997-80069016 None:intergenic 30.0%
TTTAAGAATAAAGGCAGCTT+TGG - chr4_4:80069030-80069049 Msa0706860:intron 30.0%
AAAAGCAATCTTCTACCAAA+TGG + chr4_4:80069163-80069182 None:intergenic 30.0%
AGAAAATGGATGTAGGTATT+AGG - chr4_4:80069186-80069205 Msa0706860:intron 30.0%
TGAGATGTATTCACATAATG+TGG + chr4_4:80069239-80069258 None:intergenic 30.0%
GAACTAAAATTGCAAGTTAG+TGG + chr4_4:80069311-80069330 None:intergenic 30.0%
TTTAAATGAAATCAATGGCG+TGG + chr4_4:80069333-80069352 None:intergenic 30.0%
TTTCATACACTGTCTATAAC+GGG + chr4_4:80069425-80069444 None:intergenic 30.0%
! TTTCTGACTTTGTTGTGAAA+TGG - chr4_4:80069619-80069638 Msa0706860:CDS 30.0%
TTCCCAATTATGATCTTGAA+GGG + chr4_4:80069707-80069726 None:intergenic 30.0%
ATTCCCAATTATGATCTTGA+AGG + chr4_4:80069708-80069727 None:intergenic 30.0%
TCAAGATCATAATTGGGAAT+AGG - chr4_4:80069708-80069727 Msa0706860:CDS 30.0%
AAGGTCAAAAATTTCTTCAG+AGG - chr4_4:80069753-80069772 Msa0706860:CDS 30.0%
TGTTCAGTAGTTGTATCTTA+TGG - chr4_4:80069905-80069924 Msa0706860:CDS 30.0%
ATGGAATATATTCTTCTGCA+AGG - chr4_4:80069924-80069943 Msa0706860:CDS 30.0%
AAAGAATAGCGTAGTAGTGA+TGG - chr4_4:80066564-80066583 Msa0706860:three_prime_UTR 35.0%
! GGCATTAGATTCAACGATTT+TGG + chr4_4:80066716-80066735 None:intergenic 35.0%
GTTAATCTCACTATCAACAG+AGG - chr4_4:80066751-80066770 Msa0706860:three_prime_UTR 35.0%
CCACTAGTAACTTCATAATC+TGG + chr4_4:80066847-80066866 None:intergenic 35.0%
CCAGATTATGAAGTTACTAG+TGG - chr4_4:80066844-80066863 Msa0706860:three_prime_UTR 35.0%
!!! AGTGGTAGTGTTGTTTTCAA+AGG - chr4_4:80066862-80066881 Msa0706860:three_prime_UTR 35.0%
!!! GTGGTAGTGTTGTTTTCAAA+GGG - chr4_4:80066863-80066882 Msa0706860:three_prime_UTR 35.0%
!!! TGGTAGTGTTGTTTTCAAAG+GGG - chr4_4:80066864-80066883 Msa0706860:three_prime_UTR 35.0%
! AGGGGAAAATTTGCTTGAAA+TGG - chr4_4:80066882-80066901 Msa0706860:three_prime_UTR 35.0%
ACTCATGAAAAGACCTTCAA+GGG + chr4_4:80066923-80066942 None:intergenic 35.0%
AACTCATGAAAAGACCTTCA+AGG + chr4_4:80066924-80066943 None:intergenic 35.0%
CGTTGTTATCCTTGATATTG+TGG - chr4_4:80067075-80067094 Msa0706860:intron 35.0%
TTTATGGACGTAAACATCTG+TGG - chr4_4:80067245-80067264 Msa0706860:intron 35.0%
TTATGGACGTAAACATCTGT+GGG - chr4_4:80067246-80067265 Msa0706860:intron 35.0%
! AAACATCTGTGGGATTGTTT+TGG - chr4_4:80067256-80067275 Msa0706860:intron 35.0%
GCATAAGTACTTGATTAAGC+TGG - chr4_4:80067478-80067497 Msa0706860:intron 35.0%
ATTAAGCTGGTTATCCAGAT+AGG - chr4_4:80067491-80067510 Msa0706860:intron 35.0%
TTAAGCTGGTTATCCAGATA+GGG - chr4_4:80067492-80067511 Msa0706860:intron 35.0%
CCAATTAAGTCGCAAAATCA+AGG + chr4_4:80067569-80067588 None:intergenic 35.0%
! CCTTGATTTTGCGACTTAAT+TGG - chr4_4:80067566-80067585 Msa0706860:intron 35.0%
CTCAATAGAAATGTCAACGA+AGG - chr4_4:80067724-80067743 Msa0706860:intron 35.0%
TCATCAACAGAGAATTCTCT+GGG + chr4_4:80067894-80067913 None:intergenic 35.0%
ATCATCAACAGAGAATTCTC+TGG + chr4_4:80067895-80067914 None:intergenic 35.0%
ACTTACCATAACATGGACAT+GGG + chr4_4:80067956-80067975 None:intergenic 35.0%
AACTTACCATAACATGGACA+TGG + chr4_4:80067957-80067976 None:intergenic 35.0%
! TTTCCTCTCCTTAAGTTTTG+AGG - chr4_4:80068076-80068095 Msa0706860:intron 35.0%
TTTCCTCAAAACTTAAGGAG+AGG + chr4_4:80068082-80068101 None:intergenic 35.0%
! CCCATTTTCCTCAAAACTTA+AGG + chr4_4:80068087-80068106 None:intergenic 35.0%
ACAAATGGAAAGTAGCTGAA+GGG + chr4_4:80068137-80068156 None:intergenic 35.0%
TCCATTTGTGTGAATGTACT+CGG - chr4_4:80068148-80068167 Msa0706860:intron 35.0%
!! AATGTACTCGGTTTTAGCAA+AGG - chr4_4:80068160-80068179 Msa0706860:intron 35.0%
TATACTTGCATCTTATGGGA+AGG - chr4_4:80068266-80068285 Msa0706860:intron 35.0%
TCTCATAGATGCCTAAACAA+CGG + chr4_4:80068506-80068525 None:intergenic 35.0%
ATAAAGGCCAGACATATACT+AGG + chr4_4:80068657-80068676 None:intergenic 35.0%
! TAGTATATGTCTGGCCTTTA+TGG - chr4_4:80068656-80068675 Msa0706860:CDS 35.0%
! GACCTACTTTCTTTAGGAAA+TGG + chr4_4:80068739-80068758 None:intergenic 35.0%
CCGTGGTTAATTCATAGTAT+TGG - chr4_4:80068866-80068885 Msa0706860:CDS 35.0%
!! TAATGGTTTAGGTGCTGATT+TGG - chr4_4:80068955-80068974 Msa0706860:intron 35.0%
CGTAGCTAGCAGAAAATATA+TGG + chr4_4:80068998-80069017 None:intergenic 35.0%
GTATACAGACGATCTAATTC+AGG + chr4_4:80069120-80069139 None:intergenic 35.0%
ATGCTCATTTATTGGCCATT+TGG - chr4_4:80069145-80069164 Msa0706860:intron 35.0%
GTCTATCTCAAATCATGCTA+TGG + chr4_4:80069282-80069301 None:intergenic 35.0%
TTCATACACTGTCTATAACG+GGG + chr4_4:80069424-80069443 None:intergenic 35.0%
CTTCTAAACTATCAGGACAA+CGG - chr4_4:80069495-80069514 Msa0706860:intron 35.0%
CAATTGCATCTACCATAGAT+AGG + chr4_4:80069542-80069561 None:intergenic 35.0%
ATCTATGGTAGATGCAATTG+AGG - chr4_4:80069542-80069561 Msa0706860:CDS 35.0%
TTCACAACAAAGTCAGAAAG+CGG + chr4_4:80069618-80069637 None:intergenic 35.0%
ATCCCCTTCAAGATCATAAT+TGG - chr4_4:80069701-80069720 Msa0706860:CDS 35.0%
TCCCCTTCAAGATCATAATT+GGG - chr4_4:80069702-80069721 Msa0706860:CDS 35.0%
TCCCAATTATGATCTTGAAG+GGG + chr4_4:80069706-80069725 None:intergenic 35.0%
!!! TTCAGAGGTACTTTTGCATT+TGG - chr4_4:80069768-80069787 Msa0706860:CDS 35.0%
!!! TCAGAGGTACTTTTGCATTT+GGG - chr4_4:80069769-80069788 Msa0706860:CDS 35.0%
GAAATTTATTGCCTCCTTAC+CGG - chr4_4:80069957-80069976 Msa0706860:exon 35.0%
CAATTATACTAGTACGCTTC+CGG + chr4_4:80069979-80069998 None:intergenic 35.0%
GGAGAAGAACGGAATTGAAA+TGG + chr4_4:80066610-80066629 None:intergenic 40.0%
! TGTGTGATTTGGGAGAAGAA+CGG + chr4_4:80066621-80066640 None:intergenic 40.0%
CACGCTATCATGGGAAAAAA+CGG - chr4_4:80066781-80066800 Msa0706860:three_prime_UTR 40.0%
ATCATGGGAAAAAACGGTTC+TGG - chr4_4:80066787-80066806 Msa0706860:three_prime_UTR 40.0%
!! TGGTAAAAGCACTTTCGCTA+AGG - chr4_4:80066807-80066826 Msa0706860:three_prime_UTR 40.0%
ACTTTCGCTAAGGTTCTTGT+GGG - chr4_4:80066817-80066836 Msa0706860:three_prime_UTR 40.0%
AATGCTCGGAGAAAGAAACT+TGG - chr4_4:80067003-80067022 Msa0706860:CDS 40.0%
! AAACTTGGTCTTCCTGAACT+TGG - chr4_4:80067018-80067037 Msa0706860:CDS 40.0%
!!! GGATTGTTTTGGAGAGCTTT+TGG - chr4_4:80067267-80067286 Msa0706860:intron 40.0%
TAAAAAAGGGCTACACACAG+TGG + chr4_4:80067611-80067630 None:intergenic 40.0%
!!! CTGTGTGTAGCCCTTTTTTA+TGG - chr4_4:80067611-80067630 Msa0706860:intron 40.0%
AATGTCAACGAAGGGTTTAG+TGG - chr4_4:80067733-80067752 Msa0706860:intron 40.0%
! ATCTTGCAGCTTGCAGTTTT+GGG - chr4_4:80067778-80067797 Msa0706860:intron 40.0%
!! GGATGAAATTGATTCGGGAT+TGG - chr4_4:80067819-80067838 Msa0706860:intron 40.0%
CATCAACAGAGAATTCTCTG+GGG + chr4_4:80067893-80067912 None:intergenic 40.0%
TCAGTCTCAGACTTTAAGTG+AGG - chr4_4:80068034-80068053 Msa0706860:intron 40.0%
!! TTTTGAGGAAAATGGGGTTC+AGG - chr4_4:80068091-80068110 Msa0706860:intron 40.0%
! GGGTTCAGGTGCTTAATTTT+AGG - chr4_4:80068105-80068124 Msa0706860:intron 40.0%
CACAAATGGAAAGTAGCTGA+AGG + chr4_4:80068138-80068157 None:intergenic 40.0%
ACCGAGTACATTCACACAAA+TGG + chr4_4:80068152-80068171 None:intergenic 40.0%
ACAATAGAACGCCGTTGTTT+AGG - chr4_4:80068492-80068511 Msa0706860:intron 40.0%
GTTGTTTAGGCATCTATGAG+AGG - chr4_4:80068505-80068524 Msa0706860:intron 40.0%
ATCTGATCTTCTCTCCCTAT+CGG + chr4_4:80068544-80068563 None:intergenic 40.0%
GGTAGATCAAGGAAAACCAT+TGG - chr4_4:80068586-80068605 Msa0706860:CDS 40.0%
CTCTGATCCTAGTATATGTC+TGG - chr4_4:80068647-80068666 Msa0706860:CDS 40.0%
GTGGGTTCATCTACATTGAA+GGG + chr4_4:80068688-80068707 None:intergenic 40.0%
ACTTCAGCTGATAATCCTCT+AGG + chr4_4:80068710-80068729 None:intergenic 40.0%
! ACATTATCCTTTGAGGGACT+GGG + chr4_4:80068783-80068802 None:intergenic 40.0%
! AACATTATCCTTTGAGGGAC+TGG + chr4_4:80068784-80068803 None:intergenic 40.0%
!! CTGATTTGGCAACTTTAGCA+GGG - chr4_4:80068969-80068988 Msa0706860:intron 40.0%
! GACTTTGTTGTGAAATGGTG+TGG - chr4_4:80069624-80069643 Msa0706860:CDS 40.0%
!!! CAGAGGTACTTTTGCATTTG+GGG - chr4_4:80069770-80069789 Msa0706860:CDS 40.0%
TTCTTCTGCAAGGATGAGTT+TGG - chr4_4:80069934-80069953 Msa0706860:CDS 40.0%
TCTTCTGCAAGGATGAGTTT+GGG - chr4_4:80069935-80069954 Msa0706860:CDS 40.0%
!! AAGATCGTTGACTTGGAGGA+GGG + chr4_4:80066689-80066708 None:intergenic 45.0%
TCTAATGCCGAAATTCTCCG+CGG - chr4_4:80066727-80066746 Msa0706860:three_prime_UTR 45.0%
ATTAACGCCGCGGAGAATTT+CGG + chr4_4:80066737-80066756 None:intergenic 45.0%
! TGATAGTGAGATTAACGCCG+CGG + chr4_4:80066747-80066766 None:intergenic 45.0%
AGGCGAAATTCACGCTATCA+TGG - chr4_4:80066771-80066790 Msa0706860:three_prime_UTR 45.0%
GGCGAAATTCACGCTATCAT+GGG - chr4_4:80066772-80066791 Msa0706860:three_prime_UTR 45.0%
CACTTTCGCTAAGGTTCTTG+TGG - chr4_4:80066816-80066835 Msa0706860:three_prime_UTR 45.0%
CAATCACCTGTTGCAATTCC+TGG - chr4_4:80066946-80066965 Msa0706860:exon 45.0%
GAAACACCAGGAATTGCAAC+AGG + chr4_4:80066955-80066974 None:intergenic 45.0%
AACTGCATTTAGGCCCTATC+TGG + chr4_4:80067508-80067527 None:intergenic 45.0%
TGCATGCCTGACTGCAATTA+AGG + chr4_4:80067538-80067557 None:intergenic 45.0%
! GATCTTGCAGCTTGCAGTTT+TGG - chr4_4:80067777-80067796 Msa0706860:intron 45.0%
! TCTTGCAGCTTGCAGTTTTG+GGG - chr4_4:80067779-80067798 Msa0706860:intron 45.0%
ATTGGATGTTGATGCGCTCA+GGG - chr4_4:80067837-80067856 Msa0706860:intron 45.0%
ACCATAACATGGACATGGGA+GGG + chr4_4:80067952-80067971 None:intergenic 45.0%
TACCATAACATGGACATGGG+AGG + chr4_4:80067953-80067972 None:intergenic 45.0%
CACGACATCACTTGGTACAA+TGG + chr4_4:80068372-80068391 None:intergenic 45.0%
GTTCATCTACATTGAAGGGC+CGG + chr4_4:80068684-80068703 None:intergenic 45.0%
! GGTGGGTTCATCTACATTGA+AGG + chr4_4:80068689-80068708 None:intergenic 45.0%
ATGTAGATGAACCCACCTAG+AGG - chr4_4:80068692-80068711 Msa0706860:CDS 45.0%
CAGCTGATAATCCTCTAGGT+GGG + chr4_4:80068706-80068725 None:intergenic 45.0%
TCAGCTGATAATCCTCTAGG+TGG + chr4_4:80068707-80068726 None:intergenic 45.0%
TTAGTTTCCCAGTCCCTCAA+AGG - chr4_4:80068773-80068792 Msa0706860:CDS 45.0%
!! GCTGATTTGGCAACTTTAGC+AGG - chr4_4:80068968-80068987 Msa0706860:intron 45.0%
AGGACAACGGAAGAATTGCA+AGG - chr4_4:80069508-80069527 Msa0706860:CDS 45.0%
AACGGAAGAATTGCAAGGAC+AGG - chr4_4:80069513-80069532 Msa0706860:CDS 45.0%
GTAGATGCAATTGAGGCAGA+TGG - chr4_4:80069549-80069568 Msa0706860:CDS 45.0%
TGAGGCAGATGGATATGAAC+TGG - chr4_4:80069560-80069579 Msa0706860:CDS 45.0%
TTGTTGTGAAATGGTGTGGC+TGG - chr4_4:80069628-80069647 Msa0706860:CDS 45.0%
!! TGAAATGGTGTGGCTGGTTT+CGG - chr4_4:80069634-80069653 Msa0706860:CDS 45.0%
! TGCTGTCAAGTTGCACAAGT+TGG - chr4_4:80069667-80069686 Msa0706860:CDS 45.0%
! AGGTACTTTTGCATTTGGGG+TGG - chr4_4:80069773-80069792 Msa0706860:CDS 45.0%
!! GGTACTTTTGCATTTGGGGT+GGG - chr4_4:80069774-80069793 Msa0706860:CDS 45.0%
!! GTACTTTTGCATTTGGGGTG+GGG - chr4_4:80069775-80069794 Msa0706860:CDS 45.0%
CCAGAACAGTACTGTCATCT+GGG + chr4_4:80069880-80069899 None:intergenic 45.0%
CCAGATGACAGTACTGTTCT+GGG - chr4_4:80069878-80069897 Msa0706860:CDS 45.0%
ATACTAGTACGCTTCCGGTA+AGG + chr4_4:80069974-80069993 None:intergenic 45.0%
!!! ACTTTTTTTTTTTTTTAAAA+CGG - chr4_4:80067364-80067383 Msa0706860:intron 5.0%
!!! TTTTTTTTTTTTAAGAATAA+AGG - chr4_4:80069021-80069040 Msa0706860:intron 5.0%
TTGCGGCGAGTGTGTGATTT+GGG + chr4_4:80066631-80066650 None:intergenic 50.0%
TTTGCGGCGAGTGTGTGATT+TGG + chr4_4:80066632-80066651 None:intergenic 50.0%
!! AGATCGTTGACTTGGAGGAG+GGG + chr4_4:80066688-80066707 None:intergenic 50.0%
!! GAAGATCGTTGACTTGGAGG+AGG + chr4_4:80066690-80066709 None:intergenic 50.0%
!! CTCGAAGATCGTTGACTTGG+AGG + chr4_4:80066693-80066712 None:intergenic 50.0%
! TGGCTCGAAGATCGTTGACT+TGG + chr4_4:80066696-80066715 None:intergenic 50.0%
CCTTCAAGGGCTCTTTCTTC+AGG + chr4_4:80066910-80066929 None:intergenic 50.0%
CCTGAAGAAAGAGCCCTTGA+AGG - chr4_4:80066907-80066926 Msa0706860:three_prime_UTR 50.0%
! GGGCCTAAATGCAGTTGATG+CGG - chr4_4:80067512-80067531 Msa0706860:intron 50.0%
AGGCCGCATCAACTGCATTT+AGG + chr4_4:80067518-80067537 None:intergenic 50.0%
ATGCGGCCTTAATTGCAGTC+AGG - chr4_4:80067529-80067548 Msa0706860:intron 50.0%
AAGGGCTACACACAGTGGTT+TGG + chr4_4:80067606-80067625 None:intergenic 50.0%
GTCAACGAAGGGTTTAGTGG+AGG - chr4_4:80067736-80067755 Msa0706860:intron 50.0%
!! CTTGCAGCTTGCAGTTTTGG+GGG - chr4_4:80067780-80067799 Msa0706860:intron 50.0%
!!! TGCAGTTTTGGGGGCAGATT+TGG - chr4_4:80067789-80067808 Msa0706860:intron 50.0%
! GGGGGCAGATTTGGCTATTT+TGG - chr4_4:80067798-80067817 Msa0706860:intron 50.0%
GATTGGATGTTGATGCGCTC+AGG - chr4_4:80067836-80067855 Msa0706860:intron 50.0%
ACCCTCCCATGTCCATGTTA+TGG - chr4_4:80067948-80067967 Msa0706860:intron 50.0%
GGCATCTATGAGAGGACATG+TGG - chr4_4:80068513-80068532 Msa0706860:intron 50.0%
!! GACATGTGGAAGCACCGATA+GGG - chr4_4:80068527-80068546 Msa0706860:intron 50.0%
! ATGTCTGGCCTTTATGGCAC+CGG - chr4_4:80068662-80068681 Msa0706860:CDS 50.0%
! CACTGTCTATAACGGGGATC+AGG + chr4_4:80069418-80069437 None:intergenic 50.0%
AAGGACAGGCGACCTATCTA+TGG - chr4_4:80069527-80069546 Msa0706860:CDS 50.0%
CCCAGATGACAGTACTGTTC+TGG - chr4_4:80069877-80069896 Msa0706860:CDS 50.0%
CCCAGAACAGTACTGTCATC+TGG + chr4_4:80069881-80069900 None:intergenic 50.0%
CCGCAAAGCAGGCGAATTTG+CGG + chr4_4:80066648-80066667 None:intergenic 55.0%
CCGCAAATTCGCCTGCTTTG+CGG - chr4_4:80066645-80066664 Msa0706860:three_prime_UTR 55.0%
CAAATTCGCCTGCTTTGCGG+CGG - chr4_4:80066648-80066667 Msa0706860:three_prime_UTR 55.0%
TCCTGAACTTGGACCCCTTG+AGG - chr4_4:80067029-80067048 Msa0706860:intron 55.0%
ACCTCAAGGGGTCCAAGTTC+AGG + chr4_4:80067033-80067052 None:intergenic 55.0%
TGTTGATGCGCTCAGGGATG+TGG - chr4_4:80067843-80067862 Msa0706860:intron 55.0%
!! GGACATGTGGAAGCACCGAT+AGG - chr4_4:80068526-80068545 Msa0706860:intron 55.0%
!! TTGAAGGGCCGGTGCCATAA+AGG + chr4_4:80068673-80068692 None:intergenic 55.0%
CTAGTACGCTTCCGGTAAGG+AGG + chr4_4:80069971-80069990 None:intergenic 55.0%
GACTTGGAGGAGGGGAACCT+CGG + chr4_4:80066680-80066699 None:intergenic 60.0%
GCTCAGGGATGTGGCAAGTG+CGG - chr4_4:80067852-80067871 Msa0706860:intron 60.0%
GGTGCTCGCCGCCGCAAAGC+AGG + chr4_4:80066659-80066678 None:intergenic 75.0%
! CTTTGCGGCGGCGAGCACCG+AGG - chr4_4:80066660-80066679 Msa0706860:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 80066498 80070057 80066498 ID=Msa0706860;Name=Msa0706860
chr4_4 mRNA 80066498 80070057 80066498 ID=Msa0706860-mRNA-1;Parent=Msa0706860;Name=Msa0706860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85|1|1|1|1|1|3|458|285
chr4_4 exon 80066498 80067045 80066498 ID=Msa0706860-mRNA-1:exon:25906;Parent=Msa0706860-mRNA-1
chr4_4 exon 80068586 80068885 80068586 ID=Msa0706860-mRNA-1:exon:25905;Parent=Msa0706860-mRNA-1
chr4_4 exon 80069505 80070057 80069505 ID=Msa0706860-mRNA-1:exon:25904;Parent=Msa0706860-mRNA-1
chr4_4 five_prime_UTR 80069973 80070057 80069973 ID=Msa0706860-mRNA-1:five_prime_utr;Parent=Msa0706860-mRNA-1
chr4_4 CDS 80069505 80069972 80069505 ID=Msa0706860-mRNA-1:cds;Parent=Msa0706860-mRNA-1
chr4_4 CDS 80068586 80068885 80068586 ID=Msa0706860-mRNA-1:cds;Parent=Msa0706860-mRNA-1
chr4_4 CDS 80066956 80067045 80066956 ID=Msa0706860-mRNA-1:cds;Parent=Msa0706860-mRNA-1
chr4_4 three_prime_UTR 80066498 80066955 80066498 ID=Msa0706860-mRNA-1:three_prime_utr;Parent=Msa0706860-mRNA-1
Gene Sequence

>Msa0706860

ATGGCTGTTTCATCACTCTCTCTTCCATTTCAATTCCGTTCTTCTCCCAAATCACACACTCGCCGCAAATTCGCCTGCTTTGCGGCGGCGAGCACCGAGGTTCCCCTCCTCCAAGTCAACGATCTTCGAGCCAAAATCGTTGAATCTAATGCCGAAATTCTCCGCGGCGTTAATCTCACTATCAACAGAGGCGAAATTCACGCTATCATGGGAAAAAACGGTTCTGGTAAAAGCACTTTCGCTAAGGTTCTTGTGGGTCATCCAGATTATGAAGTTACTAGTGGTAGTGTTGTTTTCAAAGGGGAAAATTTGCTTGAAATGGAACCTGAAGAAAGAGCCCTTGAAGGTCTTTTCATGAGTTTTCAATCACCTGTTGCAATTCCTGGTGTTTCAAATGATCAATTTCTTGTTATGGCTTATAATGCTCGGAGAAAGAAACTTGGTCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATTTAATGGAGAAGCTACAACTTGTTAACATGAAGCCTGACTTTCTCAATAGAAATGTCAACGAAGGGTTTAGTGGAGGTGAACGAAAACGCAATGAGATCTTGCAGCTTGCAGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCGGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCGGTTAATAAAATTCTTACCCCAGAGAATTCTCTGTTGATGATTACTCACTATCGGCGAATTCTTGATCTTTTGAAACCCTCCCATGTCCATGTTATGGACAACGGAAGAATTGCAAGGACAGGCGACCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACTGGTCTCTGTTTTAACTTAA

Protein sequence

>Msa0706860

MAVSSLSLPFQFRSSPKSHTRRKFACFAAASTEVPLLQVNDLRAKIVESNAEILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTSGSVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGRIARTGDLSMVDAIEADGYELVSVLT*