Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520660 | XP_003603240.2 | 99.024 | 717 | 6 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520660 | sp|Q9C5Z1|EIF3B_ARATH | 76.056 | 710 | 169 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520660 | G7J950 | 99.024 | 717 | 6 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1460 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0520660 | 0.825184 | 5.384252e-54 | -8.615850e-47 |
| Msa0012940 | Msa0520660 | 0.811336 | 7.367669e-51 | -8.615850e-47 |
| Msa0033880 | Msa0520660 | 0.811456 | 6.939854e-51 | -8.615850e-47 |
| Msa0046830 | Msa0520660 | 0.812452 | 4.210291e-51 | -8.615850e-47 |
| Msa0047160 | Msa0520660 | 0.819907 | 9.074799e-53 | -8.615850e-47 |
| Msa0048180 | Msa0520660 | 0.805657 | 1.200892e-49 | -8.615850e-47 |
| Msa0056270 | Msa0520660 | 0.815725 | 7.979220e-52 | -8.615850e-47 |
| Msa0097950 | Msa0520660 | 0.800890 | 1.165584e-48 | -8.615850e-47 |
| Msa0116130 | Msa0520660 | 0.802460 | 5.550582e-49 | -8.615850e-47 |
| Msa0127850 | Msa0520660 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0171850 | Msa0520660 | 0.810122 | 1.348690e-50 | -8.615850e-47 |
| Msa0174000 | Msa0520660 | 0.820337 | 7.234029e-53 | -8.615850e-47 |
| Msa0180020 | Msa0520660 | 0.813880 | 2.045406e-51 | -8.615850e-47 |
| Msa0202020 | Msa0520660 | 0.809296 | 2.030112e-50 | -8.615850e-47 |
| Msa0437020 | Msa0520660 | 0.806566 | 7.728822e-50 | -8.615850e-47 |
| Msa0443390 | Msa0520660 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
| Msa0245430 | Msa0520660 | 0.809288 | 2.037701e-50 | -8.615850e-47 |
| Msa0262480 | Msa0520660 | 0.836718 | 7.941816e-57 | -8.615850e-47 |
| Msa0289610 | Msa0520660 | 0.800304 | 1.534459e-48 | -8.615850e-47 |
| Msa0296250 | Msa0520660 | 0.811192 | 7.915554e-51 | -8.615850e-47 |
| Msa0300350 | Msa0520660 | 0.820947 | 5.240198e-53 | -8.615850e-47 |
| Msa0348830 | Msa0520660 | 0.813692 | 2.250218e-51 | -8.615850e-47 |
| Msa0520660 | Msa0550570 | 0.822859 | 1.890679e-53 | -8.615850e-47 |
| Msa0520660 | Msa0561430 | 0.806858 | 6.705216e-50 | -8.615850e-47 |
| Msa0520660 | Msa0614510 | 0.824702 | 6.993255e-54 | -8.615850e-47 |
| Msa0520660 | Msa0615580 | 0.807784 | 4.267556e-50 | -8.615850e-47 |
| Msa0520660 | Msa0619860 | 0.809262 | 2.064484e-50 | -8.615850e-47 |
| Msa0520660 | Msa0631250 | 0.816157 | 6.390788e-52 | -8.615850e-47 |
| Msa0520660 | Msa0654870 | 0.824952 | 6.106999e-54 | -8.615850e-47 |
| Msa0520660 | Msa0666230 | 0.826530 | 2.579258e-54 | -8.615850e-47 |
| Msa0520660 | Msa0706500 | 0.809725 | 1.641742e-50 | -8.615850e-47 |
| Msa0520660 | Msa0729200 | 0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0520660 | Msa0769590 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0520660 | Msa0785130 | 0.802455 | 5.563867e-49 | -8.615850e-47 |
| Msa0520660 | Msa0806880 | 0.815114 | 1.091054e-51 | -8.615850e-47 |
| Msa0520660 | Msa0888940 | 0.807178 | 5.737323e-50 | -8.615850e-47 |
| Msa0520660 | Msa0897400 | 0.819710 | 1.006724e-52 | -8.615850e-47 |
| Msa0520660 | Msa0906780 | 0.826725 | 2.316972e-54 | -8.615850e-47 |
| Msa0520660 | Msa0963020 | 0.855326 | 6.801603e-62 | -8.615850e-47 |
| Msa0520660 | Msa0968440 | 0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0520660 | Msa0980940 | 0.807557 | 4.767945e-50 | -8.615850e-47 |
| Msa0520660 | Msa0997430 | 0.822116 | 2.814237e-53 | -8.615850e-47 |
| Msa0520660 | Msa1012740 | 0.800347 | 1.503964e-48 | -8.615850e-47 |
| Msa0520660 | Msa1017510 | 0.855681 | 5.358911e-62 | -8.615850e-47 |
| Msa0520660 | Msa1019240 | 0.820763 | 5.776236e-53 | -8.615850e-47 |
| Msa0520660 | Msa1019260 | 0.807016 | 6.210155e-50 | -8.615850e-47 |
| Msa0520660 | Msa1027250 | 0.809983 | 1.444623e-50 | -8.615850e-47 |
| Msa0520660 | Msa1070390 | 0.817352 | 3.447413e-52 | -8.615850e-47 |
| Msa0520660 | Msa1072710 | 0.817605 | 3.023189e-52 | -8.615850e-47 |
| Msa0520660 | Msa1094380 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0520660 | Msa1127590 | 0.816092 | 6.609768e-52 | -8.615850e-47 |
| Msa0520660 | Msa1133400 | 0.818399 | 2.000530e-52 | -8.615850e-47 |
| Msa0520660 | Msa1156160 | 0.801039 | 1.086871e-48 | -8.615850e-47 |
| Msa0520660 | Msa1165780 | 0.800760 | 1.238877e-48 | -8.615850e-47 |
| Msa0520660 | Msa1166870 | 0.801683 | 8.020001e-49 | -8.615850e-47 |
| Msa0520660 | Msa1179950 | 0.801597 | 8.354034e-49 | -8.615850e-47 |
| Msa0520660 | Msa1179980 | 0.812363 | 4.403424e-51 | -8.615850e-47 |
| Msa0520660 | Msa1195300 | 0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0520660 | Msa1202580 | 0.802876 | 4.555695e-49 | -8.615850e-47 |
| Msa0520660 | Msa1262890 | 0.802605 | 5.181771e-49 | -8.615850e-47 |
| Msa0520660 | Msa1265630 | 0.818980 | 1.476777e-52 | -8.615850e-47 |
| Msa0520660 | Msa1270620 | 0.814088 | 1.841027e-51 | -8.615850e-47 |
| Msa0520660 | Msa1270690 | 0.811847 | 5.703887e-51 | -8.615850e-47 |
| Msa0520660 | Msa1275680 | 0.818299 | 2.107072e-52 | -8.615850e-47 |
| Msa0520660 | Msa1302380 | 0.800606 | 1.331991e-48 | -8.615850e-47 |
| Msa0520660 | Msa1316680 | 0.800790 | 1.221763e-48 | -8.615850e-47 |
| Msa0520660 | Msa1349570 | 0.804824 | 1.794070e-49 | -8.615850e-47 |
| Msa0520660 | Msa1355700 | 0.803841 | 2.875666e-49 | -8.615850e-47 |
| Msa0520660 | Msa1369190 | 0.825066 | 5.738558e-54 | -8.615850e-47 |
| Msa0520660 | Msa1385810 | 0.864321 | 1.322444e-64 | -8.615850e-47 |
| Msa0520660 | Msa1409260 | 0.867108 | 1.744248e-65 | -8.615850e-47 |
| Msa0520660 | Msa1411950 | 0.808905 | 2.461212e-50 | -8.615850e-47 |
| Msa0520660 | Msa1413500 | 0.808151 | 3.566135e-50 | -8.615850e-47 |
| Msa0520660 | Msa1427560 | 0.811671 | 6.230745e-51 | -8.615850e-47 |
| Msa0520660 | Msa1465260 | 0.813073 | 3.078817e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520660 | MtrunA17_Chr3g0136501 | 99.024 | 717 | 6 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1460 |
| Msa0520660 | MtrunA17_Chr7g0235801 | 83.505 | 97 | 16 | 0 | 603 | 699 | 10 | 106 | 6.69e-46 | 160 |
| Msa0520660 | MtrunA17_Chr4g0045551 | 23.750 | 400 | 266 | 14 | 225 | 615 | 51 | 420 | 7.38e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520660 | AT5G27640.3 | 76.056 | 710 | 169 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1156 |
| Msa0520660 | AT5G27640.1 | 76.056 | 710 | 169 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1156 |
| Msa0520660 | AT5G25780.1 | 76.361 | 698 | 164 | 1 | 17 | 713 | 14 | 711 | 0.0 | 1149 |
| Msa0520660 | AT5G27640.2 | 73.370 | 736 | 169 | 2 | 5 | 713 | 1 | 736 | 0.0 | 1143 |
| Msa0520660 | AT1G49015.1 | 50.885 | 226 | 91 | 5 | 311 | 535 | 3 | 209 | 7.91e-66 | 217 |
| Msa0520660 | AT1G73180.2 | 22.695 | 423 | 291 | 11 | 195 | 610 | 18 | 411 | 5.76e-24 | 106 |
| Msa0520660 | AT1G73180.1 | 22.695 | 423 | 291 | 11 | 195 | 610 | 18 | 411 | 6.88e-24 | 106 |
Find 202 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGGATCACTTCTTTC+AGG | 0.197022 | 3_4:-73197050 | Msa0520660:intron |
| TCAGTTCATGAAATGGAAAA+TGG | 0.213561 | 3_4:-73197115 | Msa0520660:CDS |
| TTGCCTGAGTTCTTCTTTGC+TGG | 0.214747 | 3_4:+73197818 | None:intergenic |
| TTCAATATATATAGTTCTTA+TGG | 0.217744 | 3_4:-73196741 | Msa0520660:intron |
| CTGGAGTTTGATTCTGGATT+TGG | 0.226852 | 3_4:-73199873 | Msa0520660:CDS |
| ACATACTCACAGAAAATATA+TGG | 0.231895 | 3_4:+73199532 | None:intergenic |
| GAGAATCTGGAGTTTGATTC+TGG | 0.241775 | 3_4:-73199879 | Msa0520660:CDS |
| TTCACCTGGTGAGAAGTATT+TGG | 0.260721 | 3_4:-73198523 | Msa0520660:CDS |
| TTTGAAGGTTGAAAATATAA+TGG | 0.262529 | 3_4:-73198068 | Msa0520660:CDS |
| GAAGACAAAGCTTTGCTTCT+CGG | 0.279856 | 3_4:-73200083 | Msa0520660:CDS |
| CTCGAGGATTGCTTGGTTCA+TGG | 0.280093 | 3_4:+73198487 | None:intergenic |
| CCTGGAGCATATTCCTTGTT+TGG | 0.282373 | 3_4:+73199459 | None:intergenic |
| TGGAAAATGGATTCAATATA+TGG | 0.298256 | 3_4:-73197102 | Msa0520660:CDS |
| CTTACAGCACGTTTATAAAC+AGG | 0.307612 | 3_4:+73198911 | None:intergenic |
| GTATGTCACGTTCCTTTATA+CGG | 0.318455 | 3_4:+73197673 | None:intergenic |
| GCCTATGTTATCATGGACTA+TGG | 0.330399 | 3_4:-73196087 | Msa0520660:three_prime_UTR |
| TGCCTGAGTTCTTCTTTGCT+GGG | 0.335374 | 3_4:+73197819 | None:intergenic |
| CATAGATTTGCTGTTATTCA+TGG | 0.340404 | 3_4:-73197582 | Msa0520660:CDS |
| GTCACCTTTGGGTACTTACT+TGG | 0.345166 | 3_4:-73198759 | Msa0520660:CDS |
| ATTGCGGTGGTGAGTGATTA+TGG | 0.348784 | 3_4:+73200137 | None:intergenic |
| TCAATGGCAAACATCTTTAT+CGG | 0.350253 | 3_4:-73197075 | Msa0520660:CDS |
| GCGACAACGCTAAAGCTTTA+CGG | 0.354532 | 3_4:-73200162 | Msa0520660:five_prime_UTR |
| ATGCAACAGCTTCCATTCAT+TGG | 0.362435 | 3_4:+73196549 | None:intergenic |
| TTCCTCAACTTCAATGTCCT+TGG | 0.368351 | 3_4:+73196456 | None:intergenic |
| TGACATACCTATTGAAGTTC+TGG | 0.372905 | 3_4:-73197658 | Msa0520660:CDS |
| AGTCAAGAAAGAGGCTGGTC+TGG | 0.374540 | 3_4:+73196714 | None:intergenic |
| AGCAGGCAAATGCTTTGTTT+TGG | 0.385029 | 3_4:-73197470 | Msa0520660:CDS |
| TAGATACTAATATCAGGCTT+AGG | 0.385115 | 3_4:+73197552 | None:intergenic |
| CTCAACTTGAAGGATCTCTT+TGG | 0.396493 | 3_4:+73196420 | None:intergenic |
| TCCTTCTACTGAAAAGTCCT+TGG | 0.402875 | 3_4:-73199721 | Msa0520660:CDS |
| TAGGCCTGTAAAACAATAAT+CGG | 0.409843 | 3_4:+73196105 | None:intergenic |
| TAGTTATCCTAGTAGCTAGT+TGG | 0.411219 | 3_4:-73196321 | Msa0520660:three_prime_UTR |
| AATGGATATGTCTGTGGATT+GGG | 0.412928 | 3_4:+73200420 | None:intergenic |
| AATTTCTCCTTGGGAACAAC+AGG | 0.420379 | 3_4:+73199825 | None:intergenic |
| AGGAACAAACAATGAAATGA+TGG | 0.426468 | 3_4:+73198021 | None:intergenic |
| TAACAGACTTGTGTCTGAAA+AGG | 0.427088 | 3_4:+73196182 | None:intergenic |
| TTAGCGTTGTCGCAGTGAAA+TGG | 0.428140 | 3_4:+73200172 | None:intergenic |
| ATAGAGTAGATACTAATATC+AGG | 0.429014 | 3_4:+73197546 | None:intergenic |
| TGTTATTCAAGAGGAGAATC+TGG | 0.430382 | 3_4:-73199892 | Msa0520660:CDS |
| TCGAGCTCCAGAACTTCAAT+AGG | 0.431350 | 3_4:+73197651 | None:intergenic |
| TCATTGTTTGTTCCTGAGAC+AGG | 0.434027 | 3_4:-73198013 | Msa0520660:CDS |
| ATAAGATCATTGCATTTGCT+TGG | 0.434886 | 3_4:-73197617 | Msa0520660:CDS |
| CTCTTTCTTGACTGCTGAGA+AGG | 0.436026 | 3_4:-73196704 | Msa0520660:CDS |
| GAAAGGTTTCAATGGACTGT+TGG | 0.438764 | 3_4:-73197412 | Msa0520660:CDS |
| GGAGGAGGAGCCCACTCGTC+TGG | 0.438943 | 3_4:+73199480 | None:intergenic |
| CTAGCATTTAAGTGCTAAGA+TGG | 0.439060 | 3_4:+73196144 | None:intergenic |
| CTGGCTGTGCCGTCGGTAAA+CGG | 0.442377 | 3_4:-73200300 | Msa0520660:intron |
| TTTACAGGCCTATGTTATCA+TGG | 0.444567 | 3_4:-73196094 | Msa0520660:three_prime_UTR |
| ATATGTCTGTGGATTGGGCT+CGG | 0.444679 | 3_4:+73200425 | None:intergenic |
| AGTTATCCTAGTAGCTAGTT+GGG | 0.445581 | 3_4:-73196320 | Msa0520660:three_prime_UTR |
| AAGCTTCTCGAATTTCTCCT+TGG | 0.445814 | 3_4:+73199815 | None:intergenic |
| TAAGATCATTGCATTTGCTT+GGG | 0.448404 | 3_4:-73197616 | Msa0520660:CDS |
| TAGTTGTTGACGGCGGCAAT+CGG | 0.449280 | 3_4:+73200326 | None:intergenic |
| CTTGGCAACAGTTCACCGTC+AGG | 0.449567 | 3_4:-73198741 | Msa0520660:CDS |
| CTATTAAAGAGGATGGTCTC+TGG | 0.450216 | 3_4:-73199755 | Msa0520660:CDS |
| AGAGAGATGTACTTGAAAAC+AGG | 0.450761 | 3_4:+73198266 | None:intergenic |
| GGAGCATATTCCTTGTTTGG+AGG | 0.451980 | 3_4:+73199462 | None:intergenic |
| ACAGCAAATCTATGTCCCTT+TGG | 0.453395 | 3_4:+73197591 | None:intergenic |
| AGCTTCTCGAATTTCTCCTT+GGG | 0.454211 | 3_4:+73199816 | None:intergenic |
| TTCAATATATGGTCTTTCAA+TGG | 0.455846 | 3_4:-73197091 | Msa0520660:CDS |
| AACCAGCACGAATCACAAAC+TGG | 0.455853 | 3_4:+73198981 | None:intergenic |
| GAAGACTCAAGGATACAAAC+TGG | 0.456776 | 3_4:-73199562 | Msa0520660:CDS |
| TTTATGCAACTGATGTTGAA+TGG | 0.458529 | 3_4:-73197341 | Msa0520660:CDS |
| TGTAACTTCAGTTCATGAAA+TGG | 0.459413 | 3_4:-73197122 | Msa0520660:CDS |
| TGATAAGTACTTTGCAAGGA+TGG | 0.459925 | 3_4:-73198149 | Msa0520660:CDS |
| CCTTCTACTGAAAAGTCCTT+GGG | 0.460856 | 3_4:-73199720 | Msa0520660:CDS |
| TTTGTTGATTTAGGGTTTGG+AGG | 0.461123 | 3_4:+73200389 | None:intergenic |
| CCAAACAAGGAATATGCTCC+AGG | 0.464666 | 3_4:-73199459 | Msa0520660:CDS |
| GAGGCGAAGAAGTATGTAAC+TGG | 0.467713 | 3_4:-73196372 | Msa0520660:three_prime_UTR |
| GTATGTAACTGGCTAGTAGA+TGG | 0.467949 | 3_4:-73196361 | Msa0520660:three_prime_UTR |
| GTCAAGAAAGAGGCTGGTCT+GGG | 0.472650 | 3_4:+73196715 | None:intergenic |
| TTTGTACAATGGTCACCTTT+GGG | 0.473131 | 3_4:-73198770 | Msa0520660:CDS |
| AACAGACTTGTGTCTGAAAA+GGG | 0.474344 | 3_4:+73196183 | None:intergenic |
| GGAGGTACTGGAGGTGTCAC+TGG | 0.476252 | 3_4:-73198299 | Msa0520660:CDS |
| TGAAAGAAGATTGGGACAAG+TGG | 0.476327 | 3_4:-73196573 | Msa0520660:CDS |
| TATGCGTTACGCACATCCTC+AGG | 0.476859 | 3_4:-73198678 | Msa0520660:intron |
| CAGCCAGGTTTAGTTGTTGA+CGG | 0.479174 | 3_4:+73200316 | None:intergenic |
| TGCATTTGCTTGGGAGCCAA+AGG | 0.480773 | 3_4:-73197607 | Msa0520660:CDS |
| GGTTTGGAGGCTCTTCCAAA+TGG | 0.481121 | 3_4:+73200402 | None:intergenic |
| AAAATATAATGGATTTCAGC+TGG | 0.484915 | 3_4:-73198057 | Msa0520660:CDS |
| GAGTAGTGAGCTTTGAAACT+CGG | 0.485051 | 3_4:+73197502 | None:intergenic |
| GCTAATACTCCTCAACTTGA+AGG | 0.487202 | 3_4:+73196410 | None:intergenic |
| CAAAGGAAAATCTGCAACAA+TGG | 0.488176 | 3_4:-73199027 | Msa0520660:intron |
| AAACAGAAATTTACCCTAGC+AGG | 0.488817 | 3_4:+73197977 | None:intergenic |
| GGGACAAGTGGGCCAATGAA+TGG | 0.489541 | 3_4:-73196561 | Msa0520660:CDS |
| AGAAGCTAGTGATGAGGAAG+AGG | 0.489836 | 3_4:-73196488 | Msa0520660:CDS |
| TTATGCAACTGATGTTGAAT+GGG | 0.491113 | 3_4:-73197340 | Msa0520660:CDS |
| TGGTTACCACCTCCTGTCTC+AGG | 0.491207 | 3_4:+73198001 | None:intergenic |
| GTAGGGTCTTGAAAGAAGAT+TGG | 0.493073 | 3_4:-73196582 | Msa0520660:CDS |
| GCATATTCCTTGTTTGGAGG+AGG | 0.495988 | 3_4:+73199465 | None:intergenic |
| ATGAAGAAGAGAAGCTAGAG+AGG | 0.497330 | 3_4:-73196528 | Msa0520660:CDS |
| AGATACTAATATCAGGCTTA+GGG | 0.497798 | 3_4:+73197553 | None:intergenic |
| GACCAGTTTGTGATTCGTGC+TGG | 0.499072 | 3_4:-73198983 | Msa0520660:CDS |
| GCAGGATTGAAAGGTTTCAA+TGG | 0.500217 | 3_4:-73197420 | Msa0520660:CDS |
| AGGATTCCGCAGTTGTCACC+TGG | 0.502357 | 3_4:+73200017 | None:intergenic |
| AAATGGATATGTCTGTGGAT+TGG | 0.503467 | 3_4:+73200419 | None:intergenic |
| GCACGTTTATAAACAGGGTC+GGG | 0.503903 | 3_4:+73198917 | None:intergenic |
| AATCCACAGACATATCCATT+TGG | 0.506225 | 3_4:-73200417 | Msa0520660:five_prime_UTR |
| GAGGTGGTAACCAGCCTGCT+AGG | 0.506612 | 3_4:-73197991 | Msa0520660:CDS |
| TTAGCATCTCGAGGATTGCT+TGG | 0.508363 | 3_4:+73198480 | None:intergenic |
| TAGGGTCTTGAAAGAAGATT+GGG | 0.508845 | 3_4:-73196581 | Msa0520660:CDS |
| AGCAAGAGCGTGAGAAGCGT+AGG | 0.510887 | 3_4:-73196600 | Msa0520660:CDS |
| TATGTCTGTGGATTGGGCTC+GGG | 0.511737 | 3_4:+73200426 | None:intergenic |
| GGAACAAACAATGAAATGAT+GGG | 0.513266 | 3_4:+73198022 | None:intergenic |
| GATTCCATTCACCTTCCTCC+AGG | 0.514429 | 3_4:-73200035 | Msa0520660:CDS |
| ACACTGCCCAACTAGCTACT+AGG | 0.516582 | 3_4:+73196314 | None:intergenic |
| GGTCGCTTCATTGTACTAGC+AGG | 0.518685 | 3_4:-73197438 | Msa0520660:CDS |
| GATGTTGAATGGGATCCAAC+TGG | 0.519724 | 3_4:-73197330 | Msa0520660:CDS |
| CACTACTCTGAAAGGCAAGC+AGG | 0.520325 | 3_4:-73197487 | Msa0520660:CDS |
| GCCTGAGTTCTTCTTTGCTG+GGG | 0.521347 | 3_4:+73197820 | None:intergenic |
| CCGCCGTCAACAACTAAACC+TGG | 0.522577 | 3_4:-73200319 | Msa0520660:five_prime_UTR |
| CATACTCACAGAAAATATAT+GGG | 0.522843 | 3_4:+73199533 | None:intergenic |
| TCAGCAGCAATGAAACATCT+TGG | 0.522882 | 3_4:+73196626 | None:intergenic |
| GTCACCTGGAGGAAGGTGAA+TGG | 0.523301 | 3_4:+73200031 | None:intergenic |
| TTTGTTCCTGAGACAGGAGG+TGG | 0.523334 | 3_4:-73198007 | Msa0520660:CDS |
| GTGACAACTGCGGAATCCTC+AGG | 0.526265 | 3_4:-73200013 | Msa0520660:intron |
| ATTTGGCAATATTATTGTAG+TGG | 0.528989 | 3_4:-73199856 | Msa0520660:CDS |
| ATGCGGACGGCTCAGAACAC+TGG | 0.531191 | 3_4:-73197525 | Msa0520660:CDS |
| ACAAAGAAAAGCACATTCAC+AGG | 0.534467 | 3_4:-73197708 | Msa0520660:CDS |
| ATCACTCACCACCGCAATCA+TGG | 0.534565 | 3_4:-73200132 | Msa0520660:exon |
| CTTCTCAGCAGTCAAGAAAG+AGG | 0.535616 | 3_4:+73196705 | None:intergenic |
| CAAAGAGATCCTTCAAGTTG+AGG | 0.540194 | 3_4:-73196419 | Msa0520660:CDS |
| CGCAGTTGTCACCTGGAGGA+AGG | 0.540787 | 3_4:+73200024 | None:intergenic |
| AATGGAATCGAGATCGATAG+AGG | 0.542175 | 3_4:+73200049 | None:intergenic |
| ATTGTACTAGCAGGATTGAA+AGG | 0.547734 | 3_4:-73197429 | Msa0520660:CDS |
| TAGATAATATACCTTCCAGT+TGG | 0.547750 | 3_4:+73197315 | None:intergenic |
| TCAGCAGTCAAGAAAGAGGC+TGG | 0.549593 | 3_4:+73196709 | None:intergenic |
| AGCACGTTTATAAACAGGGT+CGG | 0.550976 | 3_4:+73198916 | None:intergenic |
| CATTGAGTACAATACTCCTC+AGG | 0.551994 | 3_4:-73199688 | Msa0520660:intron |
| GCATTTGCTTGGGAGCCAAA+GGG | 0.553319 | 3_4:-73197606 | Msa0520660:CDS |
| AGCCAAGGACATTGAAGTTG+AGG | 0.555326 | 3_4:-73196458 | Msa0520660:CDS |
| AACATATTTGATGTGAGGAC+TGG | 0.564013 | 3_4:-73198368 | Msa0520660:CDS |
| TTCAGTGCAACGGAAGCGCA+AGG | 0.564465 | 3_4:+73200354 | None:intergenic |
| ACATCTTTATCGGATATTGA+AGG | 0.564648 | 3_4:-73197065 | Msa0520660:CDS |
| TTTCTTGACTGCTGAGAAGG+AGG | 0.564955 | 3_4:-73196701 | Msa0520660:CDS |
| TCAGTGACTGCAAGATGTAC+TGG | 0.566940 | 3_4:-73197779 | Msa0520660:CDS |
| AGCTAGAGAGGGAAAATCTG+AGG | 0.568066 | 3_4:-73196516 | Msa0520660:CDS |
| AGTACAATGAAGCGACCTGC+TGG | 0.569021 | 3_4:+73197444 | None:intergenic |
| AAAATGTTCAGTATTAGCCA+TGG | 0.570734 | 3_4:+73197362 | None:intergenic |
| TCAGATTGGTGCTATTAAAG+AGG | 0.572204 | 3_4:-73199766 | Msa0520660:CDS |
| ACAATGGCTTACTGATGCTA+AGG | 0.574787 | 3_4:-73199011 | Msa0520660:CDS |
| CGTTTACCGACGGCACAGCC+AGG | 0.574861 | 3_4:+73200301 | None:intergenic |
| TAATCTGCCTGTTGTTCCCA+AGG | 0.575105 | 3_4:-73199832 | Msa0520660:CDS |
| TTGTTTGTTCCTGAGACAGG+AGG | 0.576213 | 3_4:-73198010 | Msa0520660:CDS |
| ACTAAACCTGGCTGTGCCGT+CGG | 0.578062 | 3_4:-73200307 | Msa0520660:five_prime_UTR |
| CAGTGCAACGGAAGCGCAAG+GGG | 0.578270 | 3_4:+73200356 | None:intergenic |
| GTAACGCATAAGACGATTGA+AGG | 0.578909 | 3_4:+73198691 | None:intergenic |
| GATAAGTACTTTGCAAGGAT+GGG | 0.579491 | 3_4:-73198148 | Msa0520660:CDS |
| TCAAAGCTCACTACTCTGAA+AGG | 0.580014 | 3_4:-73197495 | Msa0520660:CDS |
| ATTGGTGCTATTAAAGAGGA+TGG | 0.581702 | 3_4:-73199762 | Msa0520660:CDS |
| TTGGCAACAGTTCACCGTCA+GGG | 0.582074 | 3_4:-73198740 | Msa0520660:CDS |
| AGAAATTTACCCTAGCAGGC+TGG | 0.583948 | 3_4:+73197981 | None:intergenic |
| CATGAAAGTGCCAGACGAGT+GGG | 0.584342 | 3_4:-73199490 | Msa0520660:CDS |
| GTGGGCTCCTCCTCCAAACA+AGG | 0.584356 | 3_4:-73199472 | Msa0520660:CDS |
| TCGCCTCACTCTTGAAAACA+TGG | 0.584580 | 3_4:+73196388 | None:intergenic |
| AATGAAATGATGGGATCAGT+TGG | 0.584945 | 3_4:+73198031 | None:intergenic |
| CATTACATCCGCCATGATTG+CGG | 0.586421 | 3_4:+73200121 | None:intergenic |
| TCCCCAGCAAAGAAGAACTC+AGG | 0.587881 | 3_4:-73197821 | Msa0520660:CDS |
| TGACGATGATGTTATTCAAG+AGG | 0.592706 | 3_4:-73199901 | Msa0520660:CDS |
| ATCGGTAGAGTTCAGTGCAA+CGG | 0.593909 | 3_4:+73200344 | None:intergenic |
| GAGGTGTCACTGGAGTGTCA+TGG | 0.597067 | 3_4:-73198289 | Msa0520660:CDS |
| CTTCCAAATGGATATGTCTG+TGG | 0.597999 | 3_4:+73200414 | None:intergenic |
| TCATGAAAGTGCCAGACGAG+TGG | 0.602382 | 3_4:-73199491 | Msa0520660:CDS |
| AGGTGGTAACCAGCCTGCTA+GGG | 0.602403 | 3_4:-73197990 | Msa0520660:intron |
| AAGATGATAAGTACTTTGCA+AGG | 0.602451 | 3_4:-73198153 | Msa0520660:CDS |
| TTTGCTATCGGAGGTACTGG+AGG | 0.604919 | 3_4:-73198308 | Msa0520660:CDS |
| GAAAGAAGATTGGGACAAGT+GGG | 0.605311 | 3_4:-73196572 | Msa0520660:CDS |
| TTTCTTTGCAGATGGAGTGG+TGG | 0.605394 | 3_4:-73198178 | Msa0520660:intron |
| GGAAGAGGAATATGAAGCCA+AGG | 0.609071 | 3_4:-73196473 | Msa0520660:CDS |
| CTTGCTAAAGAGAAGACTCA+AGG | 0.612535 | 3_4:-73199573 | Msa0520660:CDS |
| CAAACAAGGAATATGCTCCA+GGG | 0.614249 | 3_4:-73199458 | Msa0520660:CDS |
| GAGAGGGAAAATCTGAGGGA+CGG | 0.615059 | 3_4:-73196511 | Msa0520660:CDS |
| TCAGTGCAACGGAAGCGCAA+GGG | 0.616804 | 3_4:+73200355 | None:intergenic |
| TCGTGCTGGTTCAGATACTG+AGG | 0.620611 | 3_4:-73198969 | Msa0520660:CDS |
| ACCATAGTCCATGATAACAT+AGG | 0.624794 | 3_4:+73196086 | None:intergenic |
| AACGATCAACATTAACAGCA+AGG | 0.625990 | 3_4:+73197739 | None:intergenic |
| GGACGGAGAAGCTAGTGATG+AGG | 0.627430 | 3_4:-73196494 | Msa0520660:CDS |
| GTTACCAAATACTTCTCACC+AGG | 0.628866 | 3_4:+73198519 | None:intergenic |
| TGGCAACAGTTCACCGTCAG+GGG | 0.629158 | 3_4:-73198739 | Msa0520660:CDS |
| GCTAGAGAGGGAAAATCTGA+GGG | 0.630478 | 3_4:-73196515 | Msa0520660:CDS |
| AAGATGTACTGGCAGAGCAA+TGG | 0.630702 | 3_4:-73197768 | Msa0520660:CDS |
| GCAAGAGCGTGAGAAGCGTA+GGG | 0.638399 | 3_4:-73196599 | Msa0520660:CDS |
| TAGTATCTACTCTATGCGGA+CGG | 0.640265 | 3_4:-73197538 | Msa0520660:CDS |
| CTCAATGAAGCAGTAACCCA+AGG | 0.644342 | 3_4:+73199704 | None:intergenic |
| GGCAACAGTTCACCGTCAGG+GGG | 0.645973 | 3_4:-73198738 | Msa0520660:CDS |
| TTGAATGGGATCCAACTGGA+AGG | 0.646444 | 3_4:-73197326 | Msa0520660:intron |
| TACATCCGCCATGATTGCGG+TGG | 0.656957 | 3_4:+73200124 | None:intergenic |
| AAACAAGGAATATGCTCCAG+GGG | 0.658157 | 3_4:-73199457 | Msa0520660:intron |
| TGATAAACATATTTGATGTG+AGG | 0.659557 | 3_4:-73198373 | Msa0520660:CDS |
| TGTTGATGAGCTTGAAACCA+TGG | 0.663924 | 3_4:-73197379 | Msa0520660:CDS |
| TGAAGAAGAGAAGCTAGAGA+GGG | 0.666164 | 3_4:-73196527 | Msa0520660:CDS |
| ACACTCACATTAGCATCTCG+AGG | 0.667806 | 3_4:+73198471 | None:intergenic |
| TTACAGCACGTTTATAAACA+GGG | 0.671673 | 3_4:+73198912 | None:intergenic |
| ACGCATAAGACGATTGAAGG+TGG | 0.685145 | 3_4:+73198694 | None:intergenic |
| CTTCCTCCAGGTGACAACTG+CGG | 0.689197 | 3_4:-73200023 | Msa0520660:CDS |
| ATTCCGCAGTTGTCACCTGG+AGG | 0.690949 | 3_4:+73200020 | None:intergenic |
| GTTGCCAAGTAAGTACCCAA+AGG | 0.691070 | 3_4:+73198755 | None:intergenic |
| GGATTCTTACCGTTTACCGA+CGG | 0.695877 | 3_4:+73200291 | None:intergenic |
| ATATTAGTATCTACTCTATG+CGG | 0.708759 | 3_4:-73197542 | Msa0520660:CDS |
| CCAGGTTTAGTTGTTGACGG+CGG | 0.714336 | 3_4:+73200319 | None:intergenic |
| GTCTACAAAGATGAACACAA+AGG | 0.743492 | 3_4:+73196291 | None:intergenic |
| ACTCACCACCGCAATCATGG+CGG | 0.744529 | 3_4:-73200129 | Msa0520660:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTATAAAATTAACAAA+AGG | + | chr3_4:73197203-73197222 | None:intergenic | 15.0% |
| !!! | ATTTTATACCAAAAACAAAT+AGG | - | chr3_4:73197210-73197229 | Msa0520660:intron | 15.0% |
| !!! | TATTTTTTGAATTACAGTTT+TGG | - | chr3_4:73197704-73197723 | Msa0520660:CDS | 15.0% |
| !! | TTCAATATATATAGTTCTTA+TGG | - | chr3_4:73199765-73199784 | Msa0520660:CDS | 15.0% |
| !! | AACAAAAAAACTACAAAATT+GGG | + | chr3_4:73200240-73200259 | None:intergenic | 15.0% |
| !! | AAACAAAAAAACTACAAAAT+TGG | + | chr3_4:73200241-73200260 | None:intergenic | 15.0% |
| !! | TTCAAATTTATGAGAAAAAA+GGG | + | chr3_4:73200283-73200302 | None:intergenic | 15.0% |
| !! | AATCATAAAATCTGAAAGTA+TGG | + | chr3_4:73196553-73196572 | None:intergenic | 20.0% |
| !! | AGAAAAATTTATAGTCAGAT+TGG | - | chr3_4:73196726-73196745 | Msa0520660:CDS | 20.0% |
| !!! | GTAAATAGATACTCTTTTTT+AGG | - | chr3_4:73196840-73196859 | Msa0520660:intron | 20.0% |
| !! | ATCATATTTGTAATTCTACA+AGG | + | chr3_4:73197319-73197338 | None:intergenic | 20.0% |
| !! | TGTAGAATTACAAATATGAT+TGG | - | chr3_4:73197319-73197338 | Msa0520660:intron | 20.0% |
| !! | AATCACTATGTTCTTAAATT+TGG | - | chr3_4:73197368-73197387 | Msa0520660:CDS | 20.0% |
| !!! | TGTATTATTTGATGTTTTCT+AGG | - | chr3_4:73197640-73197659 | Msa0520660:CDS | 20.0% |
| !! | TTAAGAGATTAATGATCAAA+GGG | + | chr3_4:73197667-73197686 | None:intergenic | 20.0% |
| !! | ATTAAGAGATTAATGATCAA+AGG | + | chr3_4:73197668-73197687 | None:intergenic | 20.0% |
| !! | AAAAATATGACAACCATAAA+GGG | + | chr3_4:73197691-73197710 | None:intergenic | 20.0% |
| !! | AAAAAATATGACAACCATAA+AGG | + | chr3_4:73197692-73197711 | None:intergenic | 20.0% |
| !! | AATAAAATGAAAACTCGAAA+AGG | + | chr3_4:73197864-73197883 | None:intergenic | 20.0% |
| !! | AGTATATGAATATAAATCTC+AGG | - | chr3_4:73197944-73197963 | Msa0520660:intron | 20.0% |
| !! | TTTGAAGGTTGAAAATATAA+TGG | - | chr3_4:73198438-73198457 | Msa0520660:intron | 20.0% |
| !!! | ATGGTTATAGTTTTTTTACA+TGG | - | chr3_4:73199563-73199582 | Msa0520660:CDS | 20.0% |
| !!! | TGGTTATAGTTTTTTTACAT+GGG | - | chr3_4:73199564-73199583 | Msa0520660:CDS | 20.0% |
| !!! | AAATATTGTACAGCAATTTT+TGG | + | chr3_4:73199720-73199739 | None:intergenic | 20.0% |
| !! | GTTCAAATTTATGAGAAAAA+AGG | + | chr3_4:73200284-73200303 | None:intergenic | 20.0% |
| !!! | AACGATGTTTTGTTGATTTA+GGG | + | chr3_4:73196128-73196147 | None:intergenic | 25.0% |
| ! | AAGAGTAAATTAATGTGGAA+AGG | + | chr3_4:73196289-73196308 | None:intergenic | 25.0% |
| ! | GATAGAAGAGTAAATTAATG+TGG | + | chr3_4:73196294-73196313 | None:intergenic | 25.0% |
| ! | ATTTGGCAATATTATTGTAG+TGG | - | chr3_4:73196650-73196669 | Msa0520660:CDS | 25.0% |
| !!! | TTCAATGTTTGTTTTACCAT+CGG | - | chr3_4:73196868-73196887 | Msa0520660:intron | 25.0% |
| ! | CATACTCACAGAAAATATAT+GGG | + | chr3_4:73196976-73196995 | None:intergenic | 25.0% |
| ! | ACATACTCACAGAAAATATA+TGG | + | chr3_4:73196977-73196996 | None:intergenic | 25.0% |
| !!! | CAGTTCTTTTTTATGTTTCT+TGG | - | chr3_4:73197090-73197109 | Msa0520660:CDS | 25.0% |
| ! | GTAGTTAGATACTTAGATTA+AGG | - | chr3_4:73197264-73197283 | Msa0520660:intron | 25.0% |
| !!! | ACAAATATGATTGGTTTACT+TGG | - | chr3_4:73197328-73197347 | Msa0520660:CDS | 25.0% |
| ! | TAAGAATCACTAAACATAGA+AGG | + | chr3_4:73197442-73197461 | None:intergenic | 25.0% |
| ! | CTATGTTTAGTGATTCTTAA+TGG | - | chr3_4:73197443-73197462 | Msa0520660:CDS | 25.0% |
| ! | TTAATCTCTTAATCCCTTTA+TGG | - | chr3_4:73197675-73197694 | Msa0520660:CDS | 25.0% |
| !!! | TTTTGAATTACAGTTTTGGA+CGG | - | chr3_4:73197708-73197727 | Msa0520660:CDS | 25.0% |
| ! | AAAAGGAAAAAAAAAACCTG+AGG | + | chr3_4:73197847-73197866 | None:intergenic | 25.0% |
| ! | TGATAAACATATTTGATGTG+AGG | - | chr3_4:73198133-73198152 | Msa0520660:CDS | 25.0% |
| !! | TAAAGTGATGAGAGATTTTA+AGG | - | chr3_4:73198161-73198180 | Msa0520660:CDS | 25.0% |
| !! | AAAGTGATGAGAGATTTTAA+GGG | - | chr3_4:73198162-73198181 | Msa0520660:CDS | 25.0% |
| ! | ATGCAAATTCATCACTAAAT+TGG | + | chr3_4:73198305-73198324 | None:intergenic | 25.0% |
| !!! | AAAATATAATGGATTTCAGC+TGG | - | chr3_4:73198449-73198468 | Msa0520660:intron | 25.0% |
| ! | AATAAATACATACACACATG+AGG | + | chr3_4:73198616-73198635 | None:intergenic | 25.0% |
| !! | TTTTTAATCTCTGTTCTTGA+TGG | - | chr3_4:73198638-73198657 | Msa0520660:intron | 25.0% |
| ! | ATAGAGTAGATACTAATATC+AGG | + | chr3_4:73198963-73198982 | None:intergenic | 25.0% |
| ! | ATATTAGTATCTACTCTATG+CGG | - | chr3_4:73198964-73198983 | Msa0520660:CDS | 25.0% |
| ! | AAGTCAACATTTAATAGCTA+CGG | + | chr3_4:73199297-73199316 | None:intergenic | 25.0% |
| ! | TGGATAACCAATATAAACAT+GGG | + | chr3_4:73199336-73199355 | None:intergenic | 25.0% |
| ! | ATGGATAACCAATATAAACA+TGG | + | chr3_4:73199337-73199356 | None:intergenic | 25.0% |
| !! | TGGAAAATGGATTCAATATA+TGG | - | chr3_4:73199404-73199423 | Msa0520660:intron | 25.0% |
| ! | TTCAATATATGGTCTTTCAA+TGG | - | chr3_4:73199415-73199434 | Msa0520660:intron | 25.0% |
| !! | ATTTTATCCGTGTATTACAA+TGG | - | chr3_4:73199506-73199525 | Msa0520660:CDS | 25.0% |
| ! | TTGGATGTACAATGTTTATA+TGG | - | chr3_4:73199544-73199563 | Msa0520660:CDS | 25.0% |
| ! | TTAGTAAAGCTACTGAAAAA+AGG | + | chr3_4:73199675-73199694 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTGATTTAGGGTT+TGG | + | chr3_4:73196123-73196142 | None:intergenic | 30.0% |
| !!! | GAACGATGTTTTGTTGATTT+AGG | + | chr3_4:73196129-73196148 | None:intergenic | 30.0% |
| !! | AGCATTGATTAATATACCTG+AGG | + | chr3_4:73196512-73196531 | None:intergenic | 30.0% |
| !! | AAAGAGTATCTATTTACCTG+AGG | + | chr3_4:73196837-73196856 | None:intergenic | 30.0% |
| !! | TAAAGTGCAATGGCTATTTT+AGG | - | chr3_4:73196902-73196921 | Msa0520660:intron | 30.0% |
| ! | ATGGTCTTTATTTCTCTCAA+AGG | - | chr3_4:73197462-73197481 | Msa0520660:CDS | 30.0% |
| TTACAGCACGTTTATAAACA+GGG | + | chr3_4:73197597-73197616 | None:intergenic | 30.0% | |
| !!! | AAGCTTATTGATTTTTCACC+TGG | - | chr3_4:73197969-73197988 | Msa0520660:intron | 30.0% |
| ATTTCACGAAAAGCTCAAAA+TGG | + | chr3_4:73198077-73198096 | None:intergenic | 30.0% | |
| AGAGAAAGAATGTTGTAGTT+AGG | + | chr3_4:73198104-73198123 | None:intergenic | 30.0% | |
| TACAACATTCTTTCTCTAGA+GGG | - | chr3_4:73198107-73198126 | Msa0520660:CDS | 30.0% | |
| !!! | TGCATTTTTTTCTTTGCAGA+TGG | - | chr3_4:73198320-73198339 | Msa0520660:CDS | 30.0% |
| AAGATGATAAGTACTTTGCA+AGG | - | chr3_4:73198353-73198372 | Msa0520660:CDS | 30.0% | |
| CGTTGACAAAAAATCTTTGA+AGG | - | chr3_4:73198423-73198442 | Msa0520660:intron | 30.0% | |
| GGAACAAACAATGAAATGAT+GGG | + | chr3_4:73198487-73198506 | None:intergenic | 30.0% | |
| AGGAACAAACAATGAAATGA+TGG | + | chr3_4:73198488-73198507 | None:intergenic | 30.0% | |
| !! | GAATGTGCTTTTCTTTGTTT+TGG | + | chr3_4:73198796-73198815 | None:intergenic | 30.0% |
| ATAAGATCATTGCATTTGCT+TGG | - | chr3_4:73198889-73198908 | Msa0520660:intron | 30.0% | |
| TAAGATCATTGCATTTGCTT+GGG | - | chr3_4:73198890-73198909 | Msa0520660:intron | 30.0% | |
| !! | CATAGATTTGCTGTTATTCA+TGG | - | chr3_4:73198924-73198943 | Msa0520660:CDS | 30.0% |
| AGATACTAATATCAGGCTTA+GGG | + | chr3_4:73198956-73198975 | None:intergenic | 30.0% | |
| TAGATACTAATATCAGGCTT+AGG | + | chr3_4:73198957-73198976 | None:intergenic | 30.0% | |
| AAAATGTTCAGTATTAGCCA+TGG | + | chr3_4:73199147-73199166 | None:intergenic | 30.0% | |
| TTTATGCAACTGATGTTGAA+TGG | - | chr3_4:73199165-73199184 | Msa0520660:intron | 30.0% | |
| TTATGCAACTGATGTTGAAT+GGG | - | chr3_4:73199166-73199185 | Msa0520660:intron | 30.0% | |
| TAGATAATATACCTTCCAGT+TGG | + | chr3_4:73199194-73199213 | None:intergenic | 30.0% | |
| AAGCAATATCAACACACATT+TGG | + | chr3_4:73199218-73199237 | None:intergenic | 30.0% | |
| GGATAACCAATATAAACATG+GGG | + | chr3_4:73199335-73199354 | None:intergenic | 30.0% | |
| AACATACCTGTCGTATAAAA+TGG | + | chr3_4:73199356-73199375 | None:intergenic | 30.0% | |
| TGTAACTTCAGTTCATGAAA+TGG | - | chr3_4:73199384-73199403 | Msa0520660:intron | 30.0% | |
| TCAGTTCATGAAATGGAAAA+TGG | - | chr3_4:73199391-73199410 | Msa0520660:intron | 30.0% | |
| TCAATGGCAAACATCTTTAT+CGG | - | chr3_4:73199431-73199450 | Msa0520660:intron | 30.0% | |
| ACATCTTTATCGGATATTGA+AGG | - | chr3_4:73199441-73199460 | Msa0520660:intron | 30.0% | |
| TACATCCAAAAGTCATTCTT+TGG | + | chr3_4:73199533-73199552 | None:intergenic | 30.0% | |
| ! | AAAACTTTTACAGCCAACAA+TGG | + | chr3_4:73199599-73199618 | None:intergenic | 30.0% |
| !! | AAAAAGGCTTTTGGAAACAA+GGG | + | chr3_4:73199659-73199678 | None:intergenic | 30.0% |
| !! | AAAAAAGGCTTTTGGAAACA+AGG | + | chr3_4:73199660-73199679 | None:intergenic | 30.0% |
| !! | TTGTCCGATTATTGTTTTAC+AGG | - | chr3_4:73200397-73200416 | Msa0520660:five_prime_UTR | 30.0% |
| TAGGCCTGTAAAACAATAAT+CGG | + | chr3_4:73200404-73200423 | None:intergenic | 30.0% | |
| AATGGATATGTCTGTGGATT+GGG | + | chr3_4:73196089-73196108 | None:intergenic | 35.0% | |
| AAATGGATATGTCTGTGGAT+TGG | + | chr3_4:73196090-73196109 | None:intergenic | 35.0% | |
| AATCCACAGACATATCCATT+TGG | - | chr3_4:73196089-73196108 | Msa0520660:three_prime_UTR | 35.0% | |
| !! | TTTGTTGATTTAGGGTTTGG+AGG | + | chr3_4:73196120-73196139 | None:intergenic | 35.0% |
| GATGAAGAGAAGAGAATCTA+GGG | + | chr3_4:73196239-73196258 | None:intergenic | 35.0% | |
| AGATGAAGAGAAGAGAATCT+AGG | + | chr3_4:73196240-73196259 | None:intergenic | 35.0% | |
| TGACGATGATGTTATTCAAG+AGG | - | chr3_4:73196605-73196624 | Msa0520660:CDS | 35.0% | |
| TGTTATTCAAGAGGAGAATC+TGG | - | chr3_4:73196614-73196633 | Msa0520660:CDS | 35.0% | |
| !! | TCAGATTGGTGCTATTAAAG+AGG | - | chr3_4:73196740-73196759 | Msa0520660:intron | 35.0% |
| !! | ATTGGTGCTATTAAAGAGGA+TGG | - | chr3_4:73196744-73196763 | Msa0520660:intron | 35.0% |
| ! | TTTTCAGTAGAAGGATCAAC+AGG | + | chr3_4:73196780-73196799 | None:intergenic | 35.0% |
| TTGATGAGGTTAAAGTGCAA+TGG | - | chr3_4:73196892-73196911 | Msa0520660:intron | 35.0% | |
| AGAGATATAATCATTACCCC+TGG | + | chr3_4:73197068-73197087 | None:intergenic | 35.0% | |
| ! | TCATTTGAGACCACCATATT+AGG | - | chr3_4:73197166-73197185 | Msa0520660:intron | 35.0% |
| AGACCACCATATTAGGATTA+TGG | - | chr3_4:73197173-73197192 | Msa0520660:intron | 35.0% | |
| GACCACCATATTAGGATTAT+GGG | - | chr3_4:73197174-73197193 | Msa0520660:intron | 35.0% | |
| ! | GGCAATTTCATGTTTTCTCA+TGG | - | chr3_4:73197285-73197304 | Msa0520660:intron | 35.0% |
| TTGTAATTCTACAAGGAGTG+TGG | + | chr3_4:73197312-73197331 | None:intergenic | 35.0% | |
| AGAACATAGTGATTGAACGT+TGG | + | chr3_4:73197362-73197381 | None:intergenic | 35.0% | |
| CAAAGGAAAATCTGCAACAA+TGG | - | chr3_4:73197479-73197498 | Msa0520660:CDS | 35.0% | |
| CTTACAGCACGTTTATAAAC+AGG | + | chr3_4:73197598-73197617 | None:intergenic | 35.0% | |
| ! | TTTTGTACAATGGTCACCTT+TGG | - | chr3_4:73197735-73197754 | Msa0520660:CDS | 35.0% |
| TTTGTACAATGGTCACCTTT+GGG | - | chr3_4:73197736-73197755 | Msa0520660:CDS | 35.0% | |
| CTACAACATTCTTTCTCTAG+AGG | - | chr3_4:73198106-73198125 | Msa0520660:CDS | 35.0% | |
| AACATATTTGATGTGAGGAC+TGG | - | chr3_4:73198138-73198157 | Msa0520660:CDS | 35.0% | |
| !!! | AGTGCTGATGATTTTGCTAT+CGG | - | chr3_4:73198186-73198205 | Msa0520660:intron | 35.0% |
| AGAGAGATGTACTTGAAAAC+AGG | + | chr3_4:73198243-73198262 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTTTGCAGATGGAG+TGG | - | chr3_4:73198325-73198344 | Msa0520660:CDS | 35.0% |
| TGATAAGTACTTTGCAAGGA+TGG | - | chr3_4:73198357-73198376 | Msa0520660:CDS | 35.0% | |
| GATAAGTACTTTGCAAGGAT+GGG | - | chr3_4:73198358-73198377 | Msa0520660:CDS | 35.0% | |
| ! | AATGAAATGATGGGATCAGT+TGG | + | chr3_4:73198478-73198497 | None:intergenic | 35.0% |
| AAACAGAAATTTACCCTAGC+AGG | + | chr3_4:73198532-73198551 | None:intergenic | 35.0% | |
| CATTACACATGACCATAGAA+GGG | + | chr3_4:73198560-73198579 | None:intergenic | 35.0% | |
| !! | TCTGTTCTTGATGGATTTGT+AGG | - | chr3_4:73198647-73198666 | Msa0520660:intron | 35.0% |
| AACGATCAACATTAACAGCA+AGG | + | chr3_4:73198770-73198789 | None:intergenic | 35.0% | |
| ! | ACAAAGAAAAGCACATTCAC+AGG | - | chr3_4:73198798-73198817 | Msa0520660:intron | 35.0% |
| ! | CTTTGAGCTTTTCCGTATAA+AGG | - | chr3_4:73198821-73198840 | Msa0520660:intron | 35.0% |
| GTATGTCACGTTCCTTTATA+CGG | + | chr3_4:73198836-73198855 | None:intergenic | 35.0% | |
| TGACATACCTATTGAAGTTC+TGG | - | chr3_4:73198848-73198867 | Msa0520660:intron | 35.0% | |
| ATTGTACTAGCAGGATTGAA+AGG | - | chr3_4:73199077-73199096 | Msa0520660:intron | 35.0% | |
| ! | TGTGTTGATATTGCTTACCA+AGG | - | chr3_4:73199222-73199241 | Msa0520660:intron | 35.0% |
| TTATCCATGATCTTCAACCT+TGG | + | chr3_4:73199242-73199261 | None:intergenic | 35.0% | |
| ACTGATCCCCATGTTTATAT+TGG | - | chr3_4:73199326-73199345 | Msa0520660:intron | 35.0% | |
| ! | GGTTATCCATTTTATACGAC+AGG | - | chr3_4:73199347-73199366 | Msa0520660:intron | 35.0% |
| ATTGAAGGATCACTTCTTTC+AGG | - | chr3_4:73199456-73199475 | Msa0520660:intron | 35.0% | |
| CTTTGGACCATTGTAATACA+CGG | + | chr3_4:73199516-73199535 | None:intergenic | 35.0% | |
| ! | ATGGTCCAAAGAATGACTTT+TGG | - | chr3_4:73199525-73199544 | Msa0520660:CDS | 35.0% |
| ! | AGCTACTGAAAAAAGGCTTT+TGG | + | chr3_4:73199668-73199687 | None:intergenic | 35.0% |
| TAGGGTCTTGAAAGAAGATT+GGG | - | chr3_4:73199925-73199944 | Msa0520660:intron | 35.0% | |
| TAGTTATCCTAGTAGCTAGT+TGG | - | chr3_4:73200185-73200204 | Msa0520660:intron | 35.0% | |
| AGTTATCCTAGTAGCTAGTT+GGG | - | chr3_4:73200186-73200205 | Msa0520660:intron | 35.0% | |
| GTCTACAAAGATGAACACAA+AGG | + | chr3_4:73200218-73200237 | None:intergenic | 35.0% | |
| AACAGACTTGTGTCTGAAAA+GGG | + | chr3_4:73200326-73200345 | None:intergenic | 35.0% | |
| TAACAGACTTGTGTCTGAAA+AGG | + | chr3_4:73200327-73200346 | None:intergenic | 35.0% | |
| CTAGCATTTAAGTGCTAAGA+TGG | + | chr3_4:73200365-73200384 | None:intergenic | 35.0% | |
| TTTACAGGCCTATGTTATCA+TGG | - | chr3_4:73200412-73200431 | Msa0520660:five_prime_UTR | 35.0% | |
| ACCATAGTCCATGATAACAT+AGG | + | chr3_4:73200423-73200442 | None:intergenic | 35.0% | |
| CTTCCAAATGGATATGTCTG+TGG | + | chr3_4:73196095-73196114 | None:intergenic | 40.0% | |
| GAAGACAAAGCTTTGCTTCT+CGG | - | chr3_4:73196423-73196442 | Msa0520660:CDS | 40.0% | |
| AATGGAATCGAGATCGATAG+AGG | + | chr3_4:73196460-73196479 | None:intergenic | 40.0% | |
| ! | GAGAATCTGGAGTTTGATTC+TGG | - | chr3_4:73196627-73196646 | Msa0520660:CDS | 40.0% |
| CTGGAGTTTGATTCTGGATT+TGG | - | chr3_4:73196633-73196652 | Msa0520660:CDS | 40.0% | |
| AATTTCTCCTTGGGAACAAC+AGG | + | chr3_4:73196684-73196703 | None:intergenic | 40.0% | |
| AGCTTCTCGAATTTCTCCTT+GGG | + | chr3_4:73196693-73196712 | None:intergenic | 40.0% | |
| AAGCTTCTCGAATTTCTCCT+TGG | + | chr3_4:73196694-73196713 | None:intergenic | 40.0% | |
| CTATTAAAGAGGATGGTCTC+TGG | - | chr3_4:73196751-73196770 | Msa0520660:intron | 40.0% | |
| TCCTTCTACTGAAAAGTCCT+TGG | - | chr3_4:73196785-73196804 | Msa0520660:intron | 40.0% | |
| CCTTCTACTGAAAAGTCCTT+GGG | - | chr3_4:73196786-73196805 | Msa0520660:intron | 40.0% | |
| CATTGAGTACAATACTCCTC+AGG | - | chr3_4:73196818-73196837 | Msa0520660:intron | 40.0% | |
| !!! | GTTTTACCATCGGTTTGATG+AGG | - | chr3_4:73196878-73196897 | Msa0520660:intron | 40.0% |
| CTTTAACCTCATCAAACCGA+TGG | + | chr3_4:73196887-73196906 | None:intergenic | 40.0% | |
| CTTGCTAAAGAGAAGACTCA+AGG | - | chr3_4:73196933-73196952 | Msa0520660:intron | 40.0% | |
| GAAGACTCAAGGATACAAAC+TGG | - | chr3_4:73196944-73196963 | Msa0520660:intron | 40.0% | |
| CAAACAAGGAATATGCTCCA+GGG | - | chr3_4:73197048-73197067 | Msa0520660:intron | 40.0% | |
| AAACAAGGAATATGCTCCAG+GGG | - | chr3_4:73197049-73197068 | Msa0520660:intron | 40.0% | |
| CTCCCATAATCCTAATATGG+TGG | + | chr3_4:73197179-73197198 | None:intergenic | 40.0% | |
| GGTCTCCCATAATCCTAATA+TGG | + | chr3_4:73197182-73197201 | None:intergenic | 40.0% | |
| !! | AAGTGGGGCCTATTTGTTTT+TGG | + | chr3_4:73197221-73197240 | None:intergenic | 40.0% |
| ACAATGGCTTACTGATGCTA+AGG | - | chr3_4:73197495-73197514 | Msa0520660:CDS | 40.0% | |
| ! | GTTCAGATACTGAGGTTTTG+TGG | - | chr3_4:73197545-73197564 | Msa0520660:CDS | 40.0% |
| AGCACGTTTATAAACAGGGT+CGG | + | chr3_4:73197593-73197612 | None:intergenic | 40.0% | |
| GTAACGCATAAGACGATTGA+AGG | + | chr3_4:73197818-73197837 | None:intergenic | 40.0% | |
| !! | TTCACCTGGTGAGAAGTATT+TGG | - | chr3_4:73197983-73198002 | Msa0520660:intron | 40.0% |
| GTTACCAAATACTTCTCACC+AGG | + | chr3_4:73197990-73198009 | None:intergenic | 40.0% | |
| TCATTGTTTGTTCCTGAGAC+AGG | - | chr3_4:73198493-73198512 | Msa0520660:CDS | 40.0% | |
| ! | TCTGTTTTCCTTCCCTTCTA+TGG | - | chr3_4:73198545-73198564 | Msa0520660:intron | 40.0% |
| CCATTACACATGACCATAGA+AGG | + | chr3_4:73198561-73198580 | None:intergenic | 40.0% | |
| CCTTCTATGGTCATGTGTAA+TGG | - | chr3_4:73198558-73198577 | Msa0520660:intron | 40.0% | |
| ACAGCAAATCTATGTCCCTT+TGG | + | chr3_4:73198918-73198937 | None:intergenic | 40.0% | |
| TAGTATCTACTCTATGCGGA+CGG | - | chr3_4:73198968-73198987 | Msa0520660:CDS | 40.0% | |
| !! | GAGTAGTGAGCTTTGAAACT+CGG | + | chr3_4:73199007-73199026 | None:intergenic | 40.0% |
| TCAAAGCTCACTACTCTGAA+AGG | - | chr3_4:73199011-73199030 | Msa0520660:CDS | 40.0% | |
| !!! | AGCAGGCAAATGCTTTGTTT+TGG | - | chr3_4:73199036-73199055 | Msa0520660:intron | 40.0% |
| GCAGGATTGAAAGGTTTCAA+TGG | - | chr3_4:73199086-73199105 | Msa0520660:intron | 40.0% | |
| !! | GAAAGGTTTCAATGGACTGT+TGG | - | chr3_4:73199094-73199113 | Msa0520660:intron | 40.0% |
| ! | TGTTGATGAGCTTGAAACCA+TGG | - | chr3_4:73199127-73199146 | Msa0520660:intron | 40.0% |
| CTTACCAAGGTTGAAGATCA+TGG | - | chr3_4:73199235-73199254 | Msa0520660:intron | 40.0% | |
| TGGGATTGTGAATCCATTGT+TGG | - | chr3_4:73199583-73199602 | Msa0520660:CDS | 40.0% | |
| TCAGCAGCAATGAAACATCT+TGG | + | chr3_4:73199883-73199902 | None:intergenic | 40.0% | |
| GTAGGGTCTTGAAAGAAGAT+TGG | - | chr3_4:73199924-73199943 | Msa0520660:intron | 40.0% | |
| TGAAAGAAGATTGGGACAAG+TGG | - | chr3_4:73199933-73199952 | Msa0520660:intron | 40.0% | |
| GAAAGAAGATTGGGACAAGT+GGG | - | chr3_4:73199934-73199953 | Msa0520660:intron | 40.0% | |
| ATGCAACAGCTTCCATTCAT+TGG | + | chr3_4:73199960-73199979 | None:intergenic | 40.0% | |
| ATGAAGAAGAGAAGCTAGAG+AGG | - | chr3_4:73199978-73199997 | Msa0520660:intron | 40.0% | |
| TGAAGAAGAGAAGCTAGAGA+GGG | - | chr3_4:73199979-73199998 | Msa0520660:intron | 40.0% | |
| TTCCTCAACTTCAATGTCCT+TGG | + | chr3_4:73200053-73200072 | None:intergenic | 40.0% | |
| CTCAACTTGAAGGATCTCTT+TGG | + | chr3_4:73200089-73200108 | None:intergenic | 40.0% | |
| !! | CAAAGAGATCCTTCAAGTTG+AGG | - | chr3_4:73200087-73200106 | Msa0520660:CDS | 40.0% |
| GCTAATACTCCTCAACTTGA+AGG | + | chr3_4:73200099-73200118 | None:intergenic | 40.0% | |
| !! | TAGCCATGTTTTCAAGAGTG+AGG | - | chr3_4:73200115-73200134 | Msa0520660:CDS | 40.0% |
| GTATGTAACTGGCTAGTAGA+TGG | - | chr3_4:73200145-73200164 | Msa0520660:five_prime_UTR | 40.0% | |
| ! | GCCTATGTTATCATGGACTA+TGG | - | chr3_4:73200419-73200438 | Msa0520660:five_prime_UTR | 40.0% |
| !! | ATATGTCTGTGGATTGGGCT+CGG | + | chr3_4:73196084-73196103 | None:intergenic | 45.0% |
| ATCGGTAGAGTTCAGTGCAA+CGG | + | chr3_4:73196165-73196184 | None:intergenic | 45.0% | |
| CAGCCAGGTTTAGTTGTTGA+CGG | + | chr3_4:73196193-73196212 | None:intergenic | 45.0% | |
| GGATTCTTACCGTTTACCGA+CGG | + | chr3_4:73196218-73196237 | None:intergenic | 45.0% | |
| TTAGCGTTGTCGCAGTGAAA+TGG | + | chr3_4:73196337-73196356 | None:intergenic | 45.0% | |
| GCGACAACGCTAAAGCTTTA+CGG | - | chr3_4:73196344-73196363 | Msa0520660:three_prime_UTR | 45.0% | |
| ATTGCGGTGGTGAGTGATTA+TGG | + | chr3_4:73196372-73196391 | None:intergenic | 45.0% | |
| CATTACATCCGCCATGATTG+CGG | + | chr3_4:73196388-73196407 | None:intergenic | 45.0% | |
| TAATCTGCCTGTTGTTCCCA+AGG | - | chr3_4:73196674-73196693 | Msa0520660:CDS | 45.0% | |
| ! | CCCAAGGACTTTTCAGTAGA+AGG | + | chr3_4:73196789-73196808 | None:intergenic | 45.0% |
| CTCAATGAAGCAGTAACCCA+AGG | + | chr3_4:73196805-73196824 | None:intergenic | 45.0% | |
| ! | GCATATTCCTTGTTTGGAGG+AGG | + | chr3_4:73197044-73197063 | None:intergenic | 45.0% |
| ! | GGAGCATATTCCTTGTTTGG+AGG | + | chr3_4:73197047-73197066 | None:intergenic | 45.0% |
| CCTGGAGCATATTCCTTGTT+TGG | + | chr3_4:73197050-73197069 | None:intergenic | 45.0% | |
| CCAAACAAGGAATATGCTCC+AGG | - | chr3_4:73197047-73197066 | Msa0520660:intron | 45.0% | |
| AACCAGCACGAATCACAAAC+TGG | + | chr3_4:73197528-73197547 | None:intergenic | 45.0% | |
| GCACGTTTATAAACAGGGTC+GGG | + | chr3_4:73197592-73197611 | None:intergenic | 45.0% | |
| !! | GGACGGAGAGTTTTGTACAA+TGG | - | chr3_4:73197725-73197744 | Msa0520660:CDS | 45.0% |
| GTCACCTTTGGGTACTTACT+TGG | - | chr3_4:73197747-73197766 | Msa0520660:CDS | 45.0% | |
| GTTGCCAAGTAAGTACCCAA+AGG | + | chr3_4:73197754-73197773 | None:intergenic | 45.0% | |
| ACGCATAAGACGATTGAAGG+TGG | + | chr3_4:73197815-73197834 | None:intergenic | 45.0% | |
| TTAGCATCTCGAGGATTGCT+TGG | + | chr3_4:73198029-73198048 | None:intergenic | 45.0% | |
| ACACTCACATTAGCATCTCG+AGG | + | chr3_4:73198038-73198057 | None:intergenic | 45.0% | |
| !! | GCTGATGATTTTGCTATCGG+AGG | - | chr3_4:73198189-73198208 | Msa0520660:intron | 45.0% |
| !! | GATTTTGCTATCGGAGGTAC+TGG | - | chr3_4:73198195-73198214 | Msa0520660:intron | 45.0% |
| TTTCTTTGCAGATGGAGTGG+TGG | - | chr3_4:73198328-73198347 | Msa0520660:CDS | 45.0% | |
| TTGTTTGTTCCTGAGACAGG+AGG | - | chr3_4:73198496-73198515 | Msa0520660:CDS | 45.0% | |
| AGAAATTTACCCTAGCAGGC+TGG | + | chr3_4:73198528-73198547 | None:intergenic | 45.0% | |
| ACACATGACCATAGAAGGGA+AGG | + | chr3_4:73198556-73198575 | None:intergenic | 45.0% | |
| TGCCTGAGTTCTTCTTTGCT+GGG | + | chr3_4:73198690-73198709 | None:intergenic | 45.0% | |
| TTGCCTGAGTTCTTCTTTGC+TGG | + | chr3_4:73198691-73198710 | None:intergenic | 45.0% | |
| TCAGTGACTGCAAGATGTAC+TGG | - | chr3_4:73198727-73198746 | Msa0520660:CDS | 45.0% | |
| ! | AAGATGTACTGGCAGAGCAA+TGG | - | chr3_4:73198738-73198757 | Msa0520660:CDS | 45.0% |
| TCGAGCTCCAGAACTTCAAT+AGG | + | chr3_4:73198858-73198877 | None:intergenic | 45.0% | |
| GATGTTGAATGGGATCCAAC+TGG | - | chr3_4:73199176-73199195 | Msa0520660:intron | 45.0% | |
| TTGAATGGGATCCAACTGGA+AGG | - | chr3_4:73199180-73199199 | Msa0520660:intron | 45.0% | |
| CTTCTCAGCAGTCAAGAAAG+AGG | + | chr3_4:73199804-73199823 | None:intergenic | 45.0% | |
| CTCTTTCTTGACTGCTGAGA+AGG | - | chr3_4:73199802-73199821 | Msa0520660:CDS | 45.0% | |
| TTTCTTGACTGCTGAGAAGG+AGG | - | chr3_4:73199805-73199824 | Msa0520660:CDS | 45.0% | |
| AGCTAGAGAGGGAAAATCTG+AGG | - | chr3_4:73199990-73200009 | Msa0520660:intron | 45.0% | |
| GCTAGAGAGGGAAAATCTGA+GGG | - | chr3_4:73199991-73200010 | Msa0520660:intron | 45.0% | |
| AGAAGCTAGTGATGAGGAAG+AGG | - | chr3_4:73200018-73200037 | Msa0520660:CDS | 45.0% | |
| GGAAGAGGAATATGAAGCCA+AGG | - | chr3_4:73200033-73200052 | Msa0520660:CDS | 45.0% | |
| AGCCAAGGACATTGAAGTTG+AGG | - | chr3_4:73200048-73200067 | Msa0520660:CDS | 45.0% | |
| TCGCCTCACTCTTGAAAACA+TGG | + | chr3_4:73200121-73200140 | None:intergenic | 45.0% | |
| ! | GAGGCGAAGAAGTATGTAAC+TGG | - | chr3_4:73200134-73200153 | Msa0520660:exon | 45.0% |
| GGTTTGGAGGCTCTTCCAAA+TGG | + | chr3_4:73196107-73196126 | None:intergenic | 50.0% | |
| TAGTTGTTGACGGCGGCAAT+CGG | + | chr3_4:73196183-73196202 | None:intergenic | 50.0% | |
| CCAGGTTTAGTTGTTGACGG+CGG | + | chr3_4:73196190-73196209 | None:intergenic | 50.0% | |
| ATCACTCACCACCGCAATCA+TGG | - | chr3_4:73196374-73196393 | Msa0520660:three_prime_UTR | 50.0% | |
| GATTCCATTCACCTTCCTCC+AGG | - | chr3_4:73196471-73196490 | Msa0520660:CDS | 50.0% | |
| !! | TCATGAAAGTGCCAGACGAG+TGG | - | chr3_4:73197015-73197034 | Msa0520660:intron | 50.0% |
| !! | CATGAAAGTGCCAGACGAGT+GGG | - | chr3_4:73197016-73197035 | Msa0520660:intron | 50.0% |
| AACCAAGTAGCACGCAAGTG+GGG | + | chr3_4:73197236-73197255 | None:intergenic | 50.0% | |
| CAACCAAGTAGCACGCAAGT+GGG | + | chr3_4:73197237-73197256 | None:intergenic | 50.0% | |
| ACAACCAAGTAGCACGCAAG+TGG | + | chr3_4:73197238-73197257 | None:intergenic | 50.0% | |
| GACCAGTTTGTGATTCGTGC+TGG | - | chr3_4:73197523-73197542 | Msa0520660:CDS | 50.0% | |
| !! | TCGTGCTGGTTCAGATACTG+AGG | - | chr3_4:73197537-73197556 | Msa0520660:CDS | 50.0% |
| TTGGCAACAGTTCACCGTCA+GGG | - | chr3_4:73197766-73197785 | Msa0520660:CDS | 50.0% | |
| TATGCGTTACGCACATCCTC+AGG | - | chr3_4:73197828-73197847 | Msa0520660:CDS | 50.0% | |
| CTCGAGGATTGCTTGGTTCA+TGG | + | chr3_4:73198022-73198041 | None:intergenic | 50.0% | |
| !! | TTTGCTATCGGAGGTACTGG+AGG | - | chr3_4:73198198-73198217 | Msa0520660:intron | 50.0% |
| TTTGTTCCTGAGACAGGAGG+TGG | - | chr3_4:73198499-73198518 | Msa0520660:CDS | 50.0% | |
| TCCCCAGCAAAGAAGAACTC+AGG | - | chr3_4:73198685-73198704 | Msa0520660:CDS | 50.0% | |
| GCCTGAGTTCTTCTTTGCTG+GGG | + | chr3_4:73198689-73198708 | None:intergenic | 50.0% | |
| TGCATTTGCTTGGGAGCCAA+AGG | - | chr3_4:73198899-73198918 | Msa0520660:intron | 50.0% | |
| GCATTTGCTTGGGAGCCAAA+GGG | - | chr3_4:73198900-73198919 | Msa0520660:intron | 50.0% | |
| ! | CACTACTCTGAAAGGCAAGC+AGG | - | chr3_4:73199019-73199038 | Msa0520660:CDS | 50.0% |
| !!! | GCTTTGTTTTGGTCACCAGC+AGG | - | chr3_4:73199047-73199066 | Msa0520660:intron | 50.0% |
| AGTACAATGAAGCGACCTGC+TGG | + | chr3_4:73199065-73199084 | None:intergenic | 50.0% | |
| GGTCGCTTCATTGTACTAGC+AGG | - | chr3_4:73199068-73199087 | Msa0520660:intron | 50.0% | |
| !! | GTCAAGAAAGAGGCTGGTCT+GGG | + | chr3_4:73199794-73199813 | None:intergenic | 50.0% |
| ! | AGTCAAGAAAGAGGCTGGTC+TGG | + | chr3_4:73199795-73199814 | None:intergenic | 50.0% |
| TCAGCAGTCAAGAAAGAGGC+TGG | + | chr3_4:73199800-73199819 | None:intergenic | 50.0% | |
| GAGAGGGAAAATCTGAGGGA+CGG | - | chr3_4:73199995-73200014 | Msa0520660:intron | 50.0% | |
| ACACTGCCCAACTAGCTACT+AGG | + | chr3_4:73200195-73200214 | None:intergenic | 50.0% | |
| ! | TCAGTGCAACGGAAGCGCAA+GGG | + | chr3_4:73196154-73196173 | None:intergenic | 55.0% |
| ! | TTCAGTGCAACGGAAGCGCA+AGG | + | chr3_4:73196155-73196174 | None:intergenic | 55.0% |
| CCGCCGTCAACAACTAAACC+TGG | - | chr3_4:73196187-73196206 | Msa0520660:three_prime_UTR | 55.0% | |
| ACTAAACCTGGCTGTGCCGT+CGG | - | chr3_4:73196199-73196218 | Msa0520660:three_prime_UTR | 55.0% | |
| ACTCACCACCGCAATCATGG+CGG | - | chr3_4:73196377-73196396 | Msa0520660:three_prime_UTR | 55.0% | |
| TACATCCGCCATGATTGCGG+TGG | + | chr3_4:73196385-73196404 | None:intergenic | 55.0% | |
| GTCACCTGGAGGAAGGTGAA+TGG | + | chr3_4:73196478-73196497 | None:intergenic | 55.0% | |
| CTTCCTCCAGGTGACAACTG+CGG | - | chr3_4:73196483-73196502 | Msa0520660:CDS | 55.0% | |
| ATTCCGCAGTTGTCACCTGG+AGG | + | chr3_4:73196489-73196508 | None:intergenic | 55.0% | |
| AGGATTCCGCAGTTGTCACC+TGG | + | chr3_4:73196492-73196511 | None:intergenic | 55.0% | |
| GTGACAACTGCGGAATCCTC+AGG | - | chr3_4:73196493-73196512 | Msa0520660:CDS | 55.0% | |
| CTTGGCAACAGTTCACCGTC+AGG | - | chr3_4:73197765-73197784 | Msa0520660:CDS | 55.0% | |
| TGGCAACAGTTCACCGTCAG+GGG | - | chr3_4:73197767-73197786 | Msa0520660:CDS | 55.0% | |
| !! | GAGGTGTCACTGGAGTGTCA+TGG | - | chr3_4:73198217-73198236 | Msa0520660:intron | 55.0% |
| TGGTTACCACCTCCTGTCTC+AGG | + | chr3_4:73198508-73198527 | None:intergenic | 55.0% | |
| AGGTGGTAACCAGCCTGCTA+GGG | - | chr3_4:73198516-73198535 | Msa0520660:CDS | 55.0% | |
| ! | AGCAAGAGCGTGAGAAGCGT+AGG | - | chr3_4:73199906-73199925 | Msa0520660:CDS | 55.0% |
| ! | GCAAGAGCGTGAGAAGCGTA+GGG | - | chr3_4:73199907-73199926 | Msa0520660:CDS | 55.0% |
| GGGACAAGTGGGCCAATGAA+TGG | - | chr3_4:73199945-73199964 | Msa0520660:intron | 55.0% | |
| GGACGGAGAAGCTAGTGATG+AGG | - | chr3_4:73200012-73200031 | Msa0520660:intron | 55.0% | |
| ! | CAGTGCAACGGAAGCGCAAG+GGG | + | chr3_4:73196153-73196172 | None:intergenic | 60.0% |
| CTGGCTGTGCCGTCGGTAAA+CGG | - | chr3_4:73196206-73196225 | Msa0520660:three_prime_UTR | 60.0% | |
| CGCAGTTGTCACCTGGAGGA+AGG | + | chr3_4:73196485-73196504 | None:intergenic | 60.0% | |
| GTGGGCTCCTCCTCCAAACA+AGG | - | chr3_4:73197034-73197053 | Msa0520660:intron | 60.0% | |
| GGCAACAGTTCACCGTCAGG+GGG | - | chr3_4:73197768-73197787 | Msa0520660:CDS | 60.0% | |
| !! | GGAGGTACTGGAGGTGTCAC+TGG | - | chr3_4:73198207-73198226 | Msa0520660:intron | 60.0% |
| GAGGTGGTAACCAGCCTGCT+AGG | - | chr3_4:73198515-73198534 | Msa0520660:CDS | 60.0% | |
| ATGCGGACGGCTCAGAACAC+TGG | - | chr3_4:73198981-73199000 | Msa0520660:CDS | 60.0% | |
| CGTTTACCGACGGCACAGCC+AGG | + | chr3_4:73196208-73196227 | None:intergenic | 65.0% | |
| ! | GGCCCCACTTGCGTGCTACT+TGG | - | chr3_4:73197231-73197250 | Msa0520660:intron | 65.0% |
| ACCGTCAGGGGGCAGCAGTT+TGG | - | chr3_4:73197779-73197798 | Msa0520660:CDS | 65.0% | |
| CCCAAACTGCTGCCCCCTGA+CGG | + | chr3_4:73197783-73197802 | None:intergenic | 65.0% | |
| CCGTCAGGGGGCAGCAGTTT+GGG | - | chr3_4:73197780-73197799 | Msa0520660:CDS | 65.0% | |
| CGTCAGGGGGCAGCAGTTTG+GGG | - | chr3_4:73197781-73197800 | Msa0520660:CDS | 65.0% | |
| GGAGGAGGAGCCCACTCGTC+TGG | + | chr3_4:73197029-73197048 | None:intergenic | 70.0% | |
| CAGGGGGCAGCAGTTTGGGG+AGG | - | chr3_4:73197784-73197803 | Msa0520660:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 73196081 | 73200447 | 73196081 | ID=Msa0520660;Name=Msa0520660 |
| chr3_4 | mRNA | 73196081 | 73200447 | 73196081 | ID=Msa0520660-mRNA-1;Parent=Msa0520660;Name=Msa0520660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|0.90|0.83|12|330|717 |
| chr3_4 | exon | 73196081 | 73196749 | 73196081 | ID=Msa0520660-mRNA-1:exon:20506;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73197051 | 73197159 | 73197051 | ID=Msa0520660-mRNA-1:exon:20505;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73197327 | 73197859 | 73197327 | ID=Msa0520660-mRNA-1:exon:20504;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73197991 | 73198189 | 73197991 | ID=Msa0520660-mRNA-1:exon:20503;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73198278 | 73198402 | 73198278 | ID=Msa0520660-mRNA-1:exon:20502;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73198479 | 73198562 | 73198479 | ID=Msa0520660-mRNA-1:exon:20501;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73198679 | 73198807 | 73198679 | ID=Msa0520660-mRNA-1:exon:20500;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73198916 | 73199044 | 73198916 | ID=Msa0520660-mRNA-1:exon:20499;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73199458 | 73199604 | 73199458 | ID=Msa0520660-mRNA-1:exon:20498;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73199689 | 73199926 | 73199689 | ID=Msa0520660-mRNA-1:exon:20497;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73200014 | 73200197 | 73200014 | ID=Msa0520660-mRNA-1:exon:20496;Parent=Msa0520660-mRNA-1 |
| chr3_4 | exon | 73200301 | 73200447 | 73200301 | ID=Msa0520660-mRNA-1:exon:20495;Parent=Msa0520660-mRNA-1 |
| chr3_4 | five_prime_UTR | 73200301 | 73200447 | 73200301 | ID=Msa0520660-mRNA-1:five_prime_utr;Parent=Msa0520660-mRNA-1 |
| chr3_4 | five_prime_UTR | 73200136 | 73200197 | 73200136 | ID=Msa0520660-mRNA-1:five_prime_utr;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73200014 | 73200135 | 73200014 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73199689 | 73199926 | 73199689 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73199458 | 73199604 | 73199458 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73198916 | 73199044 | 73198916 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73198679 | 73198807 | 73198679 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73198479 | 73198562 | 73198479 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73198278 | 73198402 | 73198278 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73197991 | 73198189 | 73197991 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73197327 | 73197859 | 73197327 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73197051 | 73197159 | 73197051 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | CDS | 73196411 | 73196749 | 73196411 | ID=Msa0520660-mRNA-1:cds;Parent=Msa0520660-mRNA-1 |
| chr3_4 | three_prime_UTR | 73196081 | 73196410 | 73196081 | ID=Msa0520660-mRNA-1:three_prime_utr;Parent=Msa0520660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
