AlfalfaGEDB | Msa0685000

M. sativa cultivar zhongmu-4 / Msa0685000

KEGG: K01188
GO: -
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685000	XP_013456256.1	96.154	494	19	0	1	494	1	494	0.0	999

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685000	sp\|B8AVF0\|BGL12_ORYSI	63.257	479	148	2	41	493	34	510	0.0	609

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685000	A0A072UKP9	96.154	494	19	0	1	494	1	494	0.0	999

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0685000	0.817502	3.189981e-52	-8.615850e-47
Msa0012380	Msa0685000	0.808485	3.026273e-50	-8.615850e-47
Msa0044180	Msa0685000	0.834701	2.573949e-56	-8.615850e-47
Msa0064550	Msa0685000	0.815549	8.731546e-52	-8.615850e-47
Msa0072830	Msa0685000	0.819361	1.209351e-52	-8.615850e-47
Msa0072860	Msa0685000	0.817103	3.922491e-52	-8.615850e-47
Msa0080810	Msa0685000	0.816220	6.186133e-52	-8.615850e-47
Msa0089010	Msa0685000	0.814273	1.675281e-51	-8.615850e-47
Msa0091470	Msa0685000	0.827481	1.527904e-54	-8.615850e-47
Msa0114700	Msa0685000	0.834114	3.614177e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0685000	MtrunA17_Chr4g0033261	96.154	494	19	0	1	494	1	494	999
Msa0685000	MtrunA17_Chr4g0033231	89.496	476	50	0	19	494	19	494	906
Msa0685000	MtrunA17_Chr2g0329201	69.185	503	126	3	17	493	8	507	721
Msa0685000	MtrunA17_Chr2g0329191	67.540	496	129	5	24	493	20	509	694
Msa0685000	MtrunA17_Chr6g0482071	65.116	516	147	5	8	494	3	514	682
Msa0685000	MtrunA17_Chr6g0482131	64.258	512	153	4	9	494	6	513	676
Msa0685000	MtrunA17_Chr4g0006111	68.050	482	140	6	23	493	47	525	675
Msa0685000	MtrunA17_Chr3g0088441	60.962	520	172	3	1	494	1	515	656
Msa0685000	MtrunA17_Chr4g0033311	60.769	520	174	3	1	494	1	516	655
Msa0685000	MtrunA17_Chr4g0033271	63.043	506	157	3	14	493	10	511	654

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685000	AT2G44450.1	53.542	480	190	4	41	494	31	503	0.0	535
Msa0685000	AT5G44640.1	51.556	514	205	7	11	494	5	504	0.0	534
Msa0685000	AT5G42260.1	51.581	506	205	7	10	487	4	497	0.0	527
Msa0685000	AT3G60130.1	53.112	482	192	5	38	492	27	501	0.0	521
Msa0685000	AT2G44480.3	51.025	488	212	2	29	491	54	539	0.0	521
Msa0685000	AT2G44480.1	51.025	488	212	2	29	491	23	508	0.0	521
Msa0685000	AT2G25630.1	49.606	508	200	7	11	491	5	483	1.28e-172	495
Msa0685000	AT1G26560.1	51.255	478	203	4	41	491	32	506	9.91e-170	488
Msa0685000	AT5G24550.1	48.627	510	225	8	14	493	9	511	2.02e-168	486
Msa0685000	AT5G54570.1	49.068	483	217	3	36	491	25	505	9.56e-166	479

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Find 100 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTGGATGGAAGCAA+TGG	0.501970	4_4:-48821638	Msa0685000:CDS
AAAGTTAATTCCAAAACGTC+TGG	0.470833	4_4:+48818951	None:intergenic
AAATATGCTCATGAACATCC+AGG	0.571960	4_4:-48822525	Msa0685000:intron
AACCTTTGGGAAAACTACTA+CGG	0.526702	4_4:+48822919	None:intergenic
AAGCACACCTGGATATTTCA+AGG	0.530555	4_4:-48820037	Msa0685000:CDS
AAGCATCTTAGATTGCTCTC+TGG	0.523983	4_4:+48820140	None:intergenic
AAGCTTGGGGAAGATCCCAG+TGG	0.742534	4_4:+48820952	None:intergenic
AATAATGACACAAGCACACC+TGG	0.522457	4_4:-48820048	Msa0685000:CDS
AATGAAGGTATAAACCAAGA+AGG	0.573462	4_4:-48821116	Msa0685000:CDS
AATTTAAGACACCAAAGTAG+AGG	0.647935	4_4:+48823018	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACCAAAAATGAAACCTTT+GGG	+	chr4_4:48819014-48819033	None:intergenic	30.0%
AGTACCAAAAATGAAACCTT+TGG	+	chr4_4:48819015-48819034	None:intergenic	30.0%
ATGTAGCATACTATATATGG+TGG	-	chr4_4:48819646-48819665	Msa0685000:CDS	30.0%
CTTACTTTCGTTAGTTAAGT+TGG	-	chr4_4:48819837-48819856	Msa0685000:intron	30.0%
GGGTTAAAAGTTAACAGAAT+TGG	+	chr4_4:48819864-48819883	None:intergenic	30.0%
AAAACAAAATAATGAGGCCA+TGG	+	chr4_4:48819923-48819942	None:intergenic	30.0%
TCGAACCTTAATTAAAAGGT+AGG	+	chr4_4:48820047-48820066	None:intergenic	30.0%
TTAAATATGGATACCTTCCT+CGG	+	chr4_4:48820077-48820096	None:intergenic	30.0%
AAAATATTGGATGGAAGCAA+TGG	-	chr4_4:48820279-48820298	Msa0685000:intron	30.0%
GCATCATAAGGTAAAATCTA+TGG	+	chr4_4:48820524-48820543	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	48818873	48823066	48818873	ID=Msa0685000;Name=Msa0685000
chr4_4	mRNA	48818873	48823066	48818873	ID=Msa0685000-mRNA-1;Parent=Msa0685000;Name=Msa0685000-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0\|0.25\|0.15\|1\|1\|1\|13\|0\|494
chr4_4	exon	48822887	48823066	48822887	ID=Msa0685000-mRNA-1:exon:12144;Parent=Msa0685000-mRNA-1
chr4_4	exon	48822526	48822595	48822526	ID=Msa0685000-mRNA-1:exon:12143;Parent=Msa0685000-mRNA-1
chr4_4	exon	48821604	48821662	48821604	ID=Msa0685000-mRNA-1:exon:12142;Parent=Msa0685000-mRNA-1
chr4_4	exon	48821257	48821332	48821257	ID=Msa0685000-mRNA-1:exon:12141;Parent=Msa0685000-mRNA-1
chr4_4	exon	48821072	48821149	48821072	ID=Msa0685000-mRNA-1:exon:12140;Parent=Msa0685000-mRNA-1
chr4_4	exon	48820912	48820999	48820912	ID=Msa0685000-mRNA-1:exon:12139;Parent=Msa0685000-mRNA-1
chr4_4	exon	48820524	48820701	48820524	ID=Msa0685000-mRNA-1:exon:12138;Parent=Msa0685000-mRNA-1
chr4_4	exon	48820323	48820438	48820323	ID=Msa0685000-mRNA-1:exon:12137;Parent=Msa0685000-mRNA-1
chr4_4	exon	48820016	48820239	48820016	ID=Msa0685000-mRNA-1:exon:12136;Parent=Msa0685000-mRNA-1
chr4_4	exon	48819858	48819889	48819858	ID=Msa0685000-mRNA-1:exon:12135;Parent=Msa0685000-mRNA-1
chr4_4	exon	48819640	48819742	48819640	ID=Msa0685000-mRNA-1:exon:12134;Parent=Msa0685000-mRNA-1
chr4_4	exon	48819166	48819274	48819166	ID=Msa0685000-mRNA-1:exon:12133;Parent=Msa0685000-mRNA-1
chr4_4	exon	48818873	48819044	48818873	ID=Msa0685000-mRNA-1:exon:12132;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48822887	48823066	48822887	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48822526	48822595	48822526	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48821604	48821662	48821604	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48821257	48821332	48821257	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48821072	48821149	48821072	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48820912	48820999	48820912	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48820524	48820701	48820524	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48820323	48820438	48820323	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48820016	48820239	48820016	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48819858	48819889	48819858	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48819640	48819742	48819640	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48819166	48819274	48819166	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1
chr4_4	CDS	48818873	48819044	48818873	ID=Msa0685000-mRNA-1:cds;Parent=Msa0685000-mRNA-1

Gene Sequence

>Msa0685000

ATGGCATTCAATGGCCATCAATATCTCCTCTACTTTGGTGTCTTAAATTTTATCATTAGCTCCTTTGTTCCAATAATGGCAGCATCTGTTACTCCTACAACACTTGTGGACCGTACTTCTCTAAACCGTAGTAGTTTTCCCAAAGGTTTCATTTTTGGTACTGCCTCATCCTCTTACCAGTATGAAGGTGCTGCAAATGAAGGTGGAAGAGGACAAAGTATTTGGGATAAATATGCTCATGAACATCCAGAAAAAATATTGGATGGAAGCAATGGAGATGTAGCTGTTGATCAATATCATCGTTATAAGGAAGATGTTGCAATCATGAAGTATATGAATACAGATGCATACAGATTCTCCATCTCTTGGCCAAGAATATTGCCAAAAGGAAAAGTAAATGAAGGTATAAACCAAGAAGGAATCAAATATTACAACAACCTGATCAATGAACTACTTGATAATGGTCTGGTACCATTTGTGACCCTTTTCCACTGGGATCTTCCCCAAGCTTTACAAGACAAGTATAGCGGCTTCTTAAGCCCTAATATTATAAATGATTTTCAGGACTATGCCGAGCTATGCTTCAAGGAATTCGGAGACAGAGTGAAGCATTGGATTACCCTCAATGAGCCACACTCTTACAGTTTGGGTACGGAGCCTTACATGGCCTCACACAACCAACTCCTTGCTCATGCAGCTGCTGTCAAACTTTATAGAACCAATCATCAGGCTTCTCAAAATGGTTCAATTGGCATCACCTTAAATTGTCACTGGTTTTTGCCGTTCTCAAATGACACGTTAGATCATCAAGCTGCGGAACGTGCTCTTGATTTCATGTTTGGATGGTTTATGCAGCCACTGACAACAGGAGAGTATCCATCAAGCATGGTGTCTTTCGTGGGAAATCGATTACCAAAGTTCACCAGAGAGCAATCTAAGATGCTTATTGGTTCATTTGATTTTATTGGAATAAATTACTACACCTCCAATTATGCTTCCAATATACCACAATCAAATAATGACACAAGCACACCTGGATATTTCAAGGATACTCATGTCAATTTAACAACTGAGCGTAACGGGATACCAATTGGACCAAGGGCTGCTTCACCTTGGCTATTTGTTTATCCAAGAGGGATTCAAGAACTGCTGTTGTACACAAAGACAAAGTATAACAATCCTTTGATTTACATAACAGAAAATGGTATGGACGAGTTAAATGATCCAACGCTATCACTTGAAGAGGCGCTCATGGATACTTACAGAATCAATTACTTTTATCGACATCTTTATTATATTTCATCTGCAATCAAGCATGGTGTGAAAGTACAAGGATATTTTGCATGGTCACTTTTGGACAATTTTGAATGGCTTGCCGGATACACCAGACGTTTTGGAATTAACTTTGTAGATTACAAAGATAATCTTAAAAGACACCAAAAGCTTTCAGCTCATTGGTTTAGAAATTTTCTTAAAAAGCAGTAG

Protein sequence

>Msa0685000

MAFNGHQYLLYFGVLNFIISSFVPIMAASVTPTTLVDRTSLNRSSFPKGFIFGTASSSYQYEGAANEGGRGQSIWDKYAHEHPEKILDGSNGDVAVDQYHRYKEDVAIMKYMNTDAYRFSISWPRILPKGKVNEGINQEGIKYYNNLINELLDNGLVPFVTLFHWDLPQALQDKYSGFLSPNIINDFQDYAELCFKEFGDRVKHWITLNEPHSYSLGTEPYMASHNQLLAHAAAVKLYRTNHQASQNGSIGITLNCHWFLPFSNDTLDHQAAERALDFMFGWFMQPLTTGEYPSSMVSFVGNRLPKFTREQSKMLIGSFDFIGINYYTSNYASNIPQSNNDTSTPGYFKDTHVNLTTERNGIPIGPRAASPWLFVYPRGIQELLLYTKTKYNNPLIYITENGMDELNDPTLSLEEALMDTYRINYFYRHLYYISSAIKHGVKVQGYFAWSLLDNFEWLAGYTRRFGINFVDYKDNLKRHQKLSAHWFRNFLKKQ*