AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471760 MtrunA17_Chr3g0127351 96.983 232 7 0 1 232 1 232 9.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471760 AT4G27700.1 78.409 176 38 0 52 227 42 217 6.34e-102 295

Find 107 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATCCCATGCTATT+TGG 0.204077 3_3:-74152160 None:intergenic
CCTTAATGAGAGGAGGAAAT+TGG 0.210533 3_3:-74150807 None:intergenic
CCAATTTCCTCCTCTCATTA+AGG 0.215936 3_3:+74150807 Msa0471760:five_prime_UTR
GCTTACTTGCTAGTCCTTAA+TGG 0.218285 3_3:+74154098 Msa0471760:CDS
TTTAATCATTATTATGTCTT+TGG 0.237767 3_3:-74152067 None:intergenic
ATTTAGGTGAATTAGGTTTC+AGG 0.245763 3_3:+74151598 Msa0471760:five_prime_UTR
CAATTAACGTGCAAGTTTAC+AGG 0.264259 3_3:+74153236 Msa0471760:CDS
TTGATCACGTGTACCTTCTA+AGG 0.292255 3_3:-74152429 None:intergenic
TCAGCGACTTCTCACTTTAG+AGG 0.294655 3_3:-74151409 None:intergenic
ATTGAATCAGTGTGCTTTAG+TGG 0.304864 3_3:-74154442 Msa0471770:intron
AGACGTTGTTGTACCCATTA+AGG 0.314913 3_3:-74154112 Msa0471770:intron
GTGTATCAGCATCCTCATTA+TGG 0.316111 3_3:-74154248 Msa0471770:intron
GGAGGGGAGGTAATGGTTAA+AGG 0.323644 3_3:-74151301 None:intergenic
GATGCACATGAACCATGTTT+TGG 0.337165 3_3:+74154417 Msa0471760:three_prime_UTR
ACCTCCTTGAACTCTGCTTC+TGG 0.359245 3_3:-74153031 Msa0471770:intron
ACTTGCACGTTAATTGCATC+TGG 0.366259 3_3:-74153229 Msa0471770:intron
CTTACTTGCTAGTCCTTAAT+GGG 0.367095 3_3:+74154099 Msa0471760:CDS
TTAAAATAAGATGATGGTAT+TGG 0.371163 3_3:-74151781 None:intergenic
CCACATCATATTTACAATCC+TGG 0.388007 3_3:+74152399 Msa0471760:CDS
TCATATCTATTCAGAAGATA+TGG 0.401161 3_3:-74151363 None:intergenic
AAATGCAAATGCAGCACGTC+TGG 0.405189 3_3:-74153290 Msa0471770:intron
TGTAAAGCCCACCTTCTAGA+TGG 0.405275 3_3:-74154136 Msa0471770:intron
TGAAGGCGCAGAGCTTCCTT+TGG 0.408083 3_3:-74152974 Msa0471770:intron
ATAATAGTAGCTTGCTCAGC+AGG 0.410454 3_3:+74153476 Msa0471760:CDS
TGCCACAAAATCTGAATTTG+TGG 0.412157 3_3:-74152190 None:intergenic
AGTGTAAGTAGTTAATTCAA+TGG 0.415530 3_3:-74152303 None:intergenic
TCCTGGGTACCTTCCTTAGA+AGG 0.423883 3_3:+74152416 Msa0471760:CDS
CTTAATGAGAGGAGGAAATT+GGG 0.429363 3_3:-74150806 None:intergenic
TCAGGGACTCACCACGGTTA+AGG 0.430614 3_3:+74151616 Msa0471760:five_prime_UTR
TTTACAGGCTTATAAAAGAA+TGG 0.431650 3_3:+74153251 Msa0471760:CDS
TTTAGGTGAATTAGGTTTCA+GGG 0.440880 3_3:+74151599 Msa0471760:five_prime_UTR
GCACGGATAATTCTATTGAA+TGG 0.443072 3_3:+74151338 Msa0471760:five_prime_UTR
TGCCACAAGGTCAACAATCT+AGG 0.445952 3_3:+74153525 Msa0471760:CDS
AAGAAAGTCAATCAAATTCA+AGG 0.458401 3_3:+74151262 Msa0471760:five_prime_UTR
AACGTGAAAGAGTTGTTTAG+AGG 0.460726 3_3:-74151561 None:intergenic
GTTAATTCAATGGAAGTACT+TGG 0.463482 3_3:-74152293 None:intergenic
AAGGCCAGAAGCAGAGTTCA+AGG 0.467849 3_3:+74153027 Msa0471760:CDS
GATGAATCGCATCTGACAAA+TGG 0.470690 3_3:-74151132 None:intergenic
TAGAAGGTGGGCTTTACAAA+TGG 0.471246 3_3:+74154141 Msa0471760:CDS
TTGAAATGTAAACGTTGAAC+TGG 0.478265 3_3:+74154290 Msa0471760:three_prime_UTR
CAGATACCTGGTGACTTGGC+TGG 0.485918 3_3:-74152551 None:intergenic
ATTGAGTTCAAATCCCTTCG+AGG 0.492675 3_3:+74151704 Msa0471760:five_prime_UTR
AGGTAATAGCTGAAGAAGAA+TGG 0.495632 3_3:+74152651 Msa0471760:intron
ACGATTGTTATTAAGAAAAG+TGG 0.497171 3_3:-74150768 None:intergenic
AAGTACTAGTGTCAAGGCAG+AGG 0.501859 3_3:+74152021 Msa0471760:five_prime_UTR
CACATCATATTTACAATCCT+GGG 0.506172 3_3:+74152400 Msa0471760:CDS
CTTGCACGTTAATTGCATCT+GGG 0.507566 3_3:-74153228 Msa0471770:intron
GTACACGTGATCAAAATTCA+TGG 0.508681 3_3:+74152438 Msa0471760:CDS
CATCTTACACTTGATAAACT+CGG 0.509099 3_3:-74153344 Msa0471770:intron
CAATAACTTGAGTTAATACA+TGG 0.509127 3_3:-74151685 None:intergenic
GACTATTACTTGAATTAACC+AGG 0.510124 3_3:+74151740 Msa0471760:five_prime_UTR
TTGTCTAAAGATTGCCTCCA+TGG 0.511374 3_3:+74154350 Msa0471760:three_prime_UTR
ATCTTACACTTGATAAACTC+GGG 0.514723 3_3:-74153343 Msa0471770:intron
ACTCCTCTGCTACAGCTGGC+AGG 0.515472 3_3:-74154175 Msa0471770:intron
AGAACAGAAACTTGTTCAGC+TGG 0.515487 3_3:+74151219 Msa0471760:five_prime_UTR
AGCACGTCTGGCAATGTCCC+AGG 0.517639 3_3:-74153278 Msa0471770:intron
TCCATGGCGTTAACATGGAA+TGG 0.522426 3_3:+74154366 Msa0471760:three_prime_UTR
TTATGGTCAAAACTAGGTCC+AGG 0.530808 3_3:-74154231 Msa0471770:intron
TTTCTCAGCATGCACAATGT+TGG 0.532211 3_3:-74154208 Msa0471770:intron
GCTTTAGTGGTTCCAAAACA+TGG 0.534300 3_3:-74154429 Msa0471770:intron
TATATTTAAAACATAAACAT+AGG 0.535516 3_3:+74151989 Msa0471760:five_prime_UTR
CTGTTGTCAAGTGAGTTGTT+TGG 0.539637 3_3:-74152254 None:intergenic
GCTTTACAAATGGTTTAAAG+AGG 0.544902 3_3:+74154151 Msa0471760:CDS
CTGATACACAAAGGACAGAA+TGG 0.545138 3_3:+74154262 Msa0471760:three_prime_UTR
AACAACGTCTTCCATCTAGA+AGG 0.547666 3_3:+74154125 Msa0471760:CDS
ATGAGGATATCCAAATAGCA+TGG 0.549414 3_3:+74152150 Msa0471760:five_prime_UTR
TTATAAAAGAATGGACAGCC+TGG 0.552760 3_3:+74153260 Msa0471760:CDS
ATTCACTCCTCTGCTACAGC+TGG 0.554886 3_3:-74154179 Msa0471770:intron
TTGCCTCCATGGCGTTAACA+TGG 0.557472 3_3:+74154361 Msa0471760:three_prime_UTR
TCCTCATTATGGTCAAAACT+AGG 0.558607 3_3:-74154237 Msa0471770:intron
AGAACAGATACCTGGTGACT+TGG 0.561851 3_3:-74152555 None:intergenic
ATGAGAGGAGGAAATTGGGA+AGG 0.563624 3_3:-74150802 None:intergenic
TGAGACTGAGCTTCAAAGCA+TGG 0.566115 3_3:+74152346 Msa0471760:exon
TTAATTCAATGGAAGTACTT+GGG 0.569087 3_3:-74152292 None:intergenic
AGCGTTTCCTTAATGAGAGG+AGG 0.569738 3_3:-74150814 None:intergenic
GAAATTGGGAAGGAAGAGCT+TGG 0.576402 3_3:-74150792 None:intergenic
TTGCACGTTAATTGCATCTG+GGG 0.578396 3_3:-74153227 Msa0471770:intron
GGACCTGCCAGCTGTAGCAG+AGG 0.578953 3_3:+74154172 Msa0471760:CDS
ATTGTGCATGCTGAGAAACC+TGG 0.579123 3_3:+74154213 Msa0471760:three_prime_UTR
ACCATTCCATGTTAACGCCA+TGG 0.579175 3_3:-74154367 Msa0471770:intron
AATAGAAAGTACTAGTGTCA+AGG 0.584964 3_3:+74152015 Msa0471760:five_prime_UTR
ACAAAACCAGCCAAGTCACC+AGG 0.585038 3_3:+74152545 Msa0471760:CDS
AACGTCTTCCATCTAGAAGG+TGG 0.586598 3_3:+74154128 Msa0471760:CDS
TACCTAGATTGTTGACCTTG+TGG 0.587500 3_3:-74153527 Msa0471770:intron
AAAACATGGTTCATGTGCAT+CGG 0.587851 3_3:-74154415 Msa0471770:intron
CACAACAGAACTTTGCAAGA+GGG 0.596863 3_3:+74152501 Msa0471760:CDS
TTGAGCGTTTCCTTAATGAG+AGG 0.599603 3_3:-74150817 None:intergenic
AAATGTGCATCTGCGTATTG+TGG 0.599697 3_3:-74152220 None:intergenic
TATCGTATCAAAGTAAGCAA+AGG 0.603334 3_3:+74152092 Msa0471760:five_prime_UTR
TCACAACAGAACTTTGCAAG+AGG 0.603824 3_3:+74152500 Msa0471760:CDS
TGAGGATATCCAAATAGCAT+GGG 0.605804 3_3:+74152151 Msa0471760:five_prime_UTR
AGTACTAGTGTCAAGGCAGA+GGG 0.610650 3_3:+74152022 Msa0471760:five_prime_UTR
TATAAAAGAATGGACAGCCT+GGG 0.617323 3_3:+74153261 Msa0471760:CDS
ACCTTCTAAGGAAGGTACCC+AGG 0.624704 3_3:-74152417 None:intergenic
ACGTCTTCCATCTAGAAGGT+GGG 0.626570 3_3:+74154129 Msa0471760:CDS
CCAGGATTGTAAATATGATG+TGG 0.629329 3_3:-74152399 None:intergenic
TGCACGTTAATTGCATCTGG+GGG 0.637849 3_3:-74153226 Msa0471770:intron
CTTCTGAATAGATATGACAA+TGG 0.647609 3_3:+74151369 Msa0471760:five_prime_UTR
ATAGTAGCTTGCTCAGCAGG+AGG 0.650338 3_3:+74153479 Msa0471760:CDS
TAGGTTTCAGGGACTCACCA+CGG 0.660400 3_3:+74151610 Msa0471760:five_prime_UTR
TCACGTGTACCTTCTAAGGA+AGG 0.660526 3_3:-74152425 None:intergenic
CCAACACAAAATCTGCCACA+AGG 0.681974 3_3:+74153512 Msa0471760:CDS
ATGAGGATGCTGATACACAA+AGG 0.685477 3_3:+74154253 Msa0471760:three_prime_UTR
ATTCCATGTTAACGCCATGG+AGG 0.719899 3_3:-74154364 Msa0471770:intron
CTTGAGATGTGCCTTAACCG+TGG 0.723324 3_3:-74151627 None:intergenic
GCCAGAAGCAGAGTTCAAGG+AGG 0.748938 3_3:+74153030 Msa0471760:CDS
TACTTGGGATCAGACTACTG+CGG 0.756375 3_3:-74152277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATATGAAAAAATTT+AGG + chr3_3:74151582-74151601 Msa0471760:five_prime_UTR 10.0%
!!! TATATTTAAAACATAAACAT+AGG + chr3_3:74151989-74152008 Msa0471760:five_prime_UTR 10.0%
!!! AGTTAATTAGATTTTAAACA+AGG + chr3_3:74151486-74151505 Msa0471760:five_prime_UTR 15.0%
!!! TTTTACTTAAAATAAGATGA+TGG - chr3_3:74151790-74151809 None:intergenic 15.0%
!! TTTAATCATTATTATGTCTT+TGG - chr3_3:74152070-74152089 None:intergenic 15.0%
!! GTTTAATTGATTGTAATATA+GGG + chr3_3:74153148-74153167 Msa0471760:intron 15.0%
!!! ATGTATGTTTTTTTAGCATA+TGG + chr3_3:74150905-74150924 Msa0471760:intron 20.0%
!!! ATTAACTTACTGTTTCTATT+AGG + chr3_3:74151061-74151080 Msa0471760:intron 20.0%
!! TGAAAAAATTTAGGTGAATT+AGG + chr3_3:74151591-74151610 Msa0471760:five_prime_UTR 20.0%
!!! TATCAAACTTTTTAAAAACC+TGG - chr3_3:74151761-74151780 None:intergenic 20.0%
!!! TTAAAATAAGATGATGGTAT+TGG - chr3_3:74151784-74151803 None:intergenic 20.0%
!!! TACTGCTTTATTTTTTTGTA+GGG - chr3_3:74151925-74151944 None:intergenic 20.0%
!!! TTACTGCTTTATTTTTTTGT+AGG - chr3_3:74151926-74151945 None:intergenic 20.0%
!! AGGAAAAAGAAAAGAAAAAA+AGG + chr3_3:74152112-74152131 Msa0471760:five_prime_UTR 20.0%
!! AACTAAAAGATTGAAATGTT+TGG + chr3_3:74152818-74152837 Msa0471760:intron 20.0%
!!! CAAAATTATTTTCTTTCTGA+AGG - chr3_3:74152994-74153013 Msa0471770:intron 20.0%
!! GGTTTAATTGATTGTAATAT+AGG + chr3_3:74153147-74153166 Msa0471760:intron 20.0%
!! AACTAAATATTTGATTCATG+CGG + chr3_3:74153417-74153436 Msa0471760:intron 20.0%
!!! CAAAGACATTTAAATTTTAG+AGG + chr3_3:74153784-74153803 Msa0471760:intron 20.0%
!! TTATATCACATGTAACAAAT+TGG - chr3_3:74153849-74153868 Msa0471770:intron 20.0%
!!! AAGACAAATTAGTTCTTTAT+CGG + chr3_3:74153888-74153907 Msa0471760:intron 20.0%
!! ATAATATTCAAATCATCGAT+TGG + chr3_3:74154028-74154047 Msa0471760:intron 20.0%
!! ACGATTGTTATTAAGAAAAG+TGG - chr3_3:74150771-74150790 None:intergenic 25.0%
!! TGTTTTATGCTTGAAAACAA+TGG - chr3_3:74150870-74150889 None:intergenic 25.0%
!!! ATTGTTTTCAAGCATAAAAC+AGG + chr3_3:74150869-74150888 Msa0471760:five_prime_UTR 25.0%
!!! TATTTTGCATAATTCGAGTT+AGG + chr3_3:74150944-74150963 Msa0471760:intron 25.0%
!!! GAGTTAGGCTTATTATTTTT+TGG + chr3_3:74150959-74150978 Msa0471760:intron 25.0%
!!! TTACTGTTTCTATTAGGTAT+GGG + chr3_3:74151067-74151086 Msa0471760:intron 25.0%
! AAGAAAGTCAATCAAATTCA+AGG + chr3_3:74151262-74151281 Msa0471760:five_prime_UTR 25.0%
!!! TGCTTGAAAATTTTAAAGGA+GGG - chr3_3:74151321-74151340 None:intergenic 25.0%
!!! TCCTTTAAAATTTTCAAGCA+CGG + chr3_3:74151321-74151340 Msa0471760:five_prime_UTR 25.0%
! TCATATCTATTCAGAAGATA+TGG - chr3_3:74151366-74151385 None:intergenic 25.0%
! CAATAACTTGAGTTAATACA+TGG - chr3_3:74151688-74151707 None:intergenic 25.0%
!!! TTAATTCAATGGAAGTACTT+GGG - chr3_3:74152295-74152314 None:intergenic 25.0%
! AGTGTAAGTAGTTAATTCAA+TGG - chr3_3:74152306-74152325 None:intergenic 25.0%
!!! TGTTGTGATTTTTGAGAATT+GGG - chr3_3:74152488-74152507 None:intergenic 25.0%
! AAACTTAACTTCACTTTCTT+TGG + chr3_3:74152628-74152647 Msa0471760:intron 25.0%
! AATATAAATGCTAAAGATGC+AGG - chr3_3:74152771-74152790 Msa0471770:intron 25.0%
! CTATTTACTAATAAACAGCA+AGG + chr3_3:74152857-74152876 Msa0471760:intron 25.0%
! TATCTTTGATCTAATGTTGT+AGG + chr3_3:74152937-74152956 Msa0471760:intron 25.0%
!! ATTTTGTGATTCTTGATGTA+AGG + chr3_3:74153008-74153027 Msa0471760:CDS 25.0%
! AAAATGTAACATGAATGTAC+AGG - chr3_3:74153100-74153119 Msa0471770:intron 25.0%
! AGAAGGAAAAAAAAAACTGA+TGG + chr3_3:74153176-74153195 Msa0471760:intron 25.0%
! TTTACAGGCTTATAAAAGAA+TGG + chr3_3:74153251-74153270 Msa0471760:CDS 25.0%
!!! ACATTTAAATTTTAGAGGAC+AGG + chr3_3:74153789-74153808 Msa0471760:intron 25.0%
! TTTCATAATTGCATGAAAAG+TGG - chr3_3:74154007-74154026 Msa0471770:intron 25.0%
!! CTTACTGTTTCTATTAGGTA+TGG + chr3_3:74151066-74151085 Msa0471760:intron 30.0%
!! GCTTGAAAATTTTAAAGGAG+GGG - chr3_3:74151320-74151339 None:intergenic 30.0%
!! GTGCTTGAAAATTTTAAAGG+AGG - chr3_3:74151322-74151341 None:intergenic 30.0%
! TCCGTGCTTGAAAATTTTAA+AGG - chr3_3:74151325-74151344 None:intergenic 30.0%
CTTCTGAATAGATATGACAA+TGG + chr3_3:74151369-74151388 Msa0471760:five_prime_UTR 30.0%
ATTTAGGTGAATTAGGTTTC+AGG + chr3_3:74151598-74151617 Msa0471760:five_prime_UTR 30.0%
TTTAGGTGAATTAGGTTTCA+GGG + chr3_3:74151599-74151618 Msa0471760:five_prime_UTR 30.0%
! CATGGCAAAACTTTTATCAT+TGG - chr3_3:74151670-74151689 None:intergenic 30.0%
GACTATTACTTGAATTAACC+AGG + chr3_3:74151740-74151759 Msa0471760:five_prime_UTR 30.0%
!! AATAGAAAGTACTAGTGTCA+AGG + chr3_3:74152015-74152034 Msa0471760:five_prime_UTR 30.0%
TATCGTATCAAAGTAAGCAA+AGG + chr3_3:74152092-74152111 Msa0471760:five_prime_UTR 30.0%
! GGACAAAAATGATGATAATG+AGG + chr3_3:74152133-74152152 Msa0471760:five_prime_UTR 30.0%
!! GTTAATTCAATGGAAGTACT+TGG - chr3_3:74152296-74152315 None:intergenic 30.0%
CACATCATATTTACAATCCT+GGG + chr3_3:74152400-74152419 Msa0471760:CDS 30.0%
!! CTGTTGTGATTTTTGAGAAT+TGG - chr3_3:74152489-74152508 None:intergenic 30.0%
!! AAATCTTTAAAGTGCTGTGA+CGG - chr3_3:74152603-74152622 None:intergenic 30.0%
! GTATTCTTATTTGTGCATTC+AGG - chr3_3:74152749-74152768 Msa0471770:three_prime_UTR 30.0%
TACTAATAAACAGCAAGGAT+CGG + chr3_3:74152862-74152881 Msa0471760:intron 30.0%
AATGTTGTAGGTAAAAAGTG+TGG + chr3_3:74152949-74152968 Msa0471760:intron 30.0%
! TGTAATATAGGGTACTAAGA+AGG + chr3_3:74153159-74153178 Msa0471760:intron 30.0%
ATTTGTCTATGATGAATGCA+GGG + chr3_3:74153199-74153218 Msa0471760:intron 30.0%
!!! GCATTTTTTGGTATTTTCTC+TGG + chr3_3:74153307-74153326 Msa0471760:CDS 30.0%
ATCTTACACTTGATAAACTC+GGG - chr3_3:74153346-74153365 Msa0471770:intron 30.0%
CATCTTACACTTGATAAACT+CGG - chr3_3:74153347-74153366 Msa0471770:intron 30.0%
TGAGCAATATTGAAAAACCA+GGG - chr3_3:74153600-74153619 Msa0471770:intron 30.0%
ATGAGCAATATTGAAAAACC+AGG - chr3_3:74153601-74153620 Msa0471770:intron 30.0%
AAGAATATACAGACCAAAAC+TGG + chr3_3:74153667-74153686 Msa0471760:intron 30.0%
AATGTCTTTGAATCTGATGT+TGG - chr3_3:74153774-74153793 Msa0471770:intron 30.0%
! TGTCTTTTTATTACTCTCTC+TGG - chr3_3:74153874-74153893 Msa0471770:intron 30.0%
! TTATCGGCTAAAATACACAA+TGG + chr3_3:74153904-74153923 Msa0471760:intron 30.0%
CATGCAATCCAAGTTATTAA+TGG - chr3_3:74153936-74153955 Msa0471770:intron 30.0%
CATTAATAACTTGGATTGCA+TGG + chr3_3:74153934-74153953 Msa0471760:intron 30.0%
! TCACATTTTTGTACTTTCGT+AGG + chr3_3:74154063-74154082 Msa0471760:intron 30.0%
GCTTTACAAATGGTTTAAAG+AGG + chr3_3:74154151-74154170 Msa0471760:CDS 30.0%
TTGAAATGTAAACGTTGAAC+TGG + chr3_3:74154290-74154309 Msa0471760:three_prime_UTR 30.0%
CTTAATGAGAGGAGGAAATT+GGG - chr3_3:74150809-74150828 None:intergenic 35.0%
!! TGAAAATTTTAAAGGAGGGG+AGG - chr3_3:74151317-74151336 None:intergenic 35.0%
GCACGGATAATTCTATTGAA+TGG + chr3_3:74151338-74151357 Msa0471760:five_prime_UTR 35.0%
AACGTGAAAGAGTTGTTTAG+AGG - chr3_3:74151564-74151583 None:intergenic 35.0%
ATGAGGATATCCAAATAGCA+TGG + chr3_3:74152150-74152169 Msa0471760:five_prime_UTR 35.0%
TGAGGATATCCAAATAGCAT+GGG + chr3_3:74152151-74152170 Msa0471760:five_prime_UTR 35.0%
TTTAGGAATCCCATGCTATT+TGG - chr3_3:74152163-74152182 None:intergenic 35.0%
! GAATTTGTGGTCGATGTTTT+AGG - chr3_3:74152180-74152199 None:intergenic 35.0%
! GACCACAAATTCAGATTTTG+TGG + chr3_3:74152188-74152207 Msa0471760:five_prime_UTR 35.0%
TGCCACAAAATCTGAATTTG+TGG - chr3_3:74152193-74152212 None:intergenic 35.0%
CCAGGATTGTAAATATGATG+TGG - chr3_3:74152402-74152421 None:intergenic 35.0%
CCACATCATATTTACAATCC+TGG + chr3_3:74152399-74152418 Msa0471760:CDS 35.0%
GTACACGTGATCAAAATTCA+TGG + chr3_3:74152438-74152457 Msa0471760:CDS 35.0%
CTTAACTTCACTTTCTTTGG+AGG + chr3_3:74152631-74152650 Msa0471760:intron 35.0%
AGGTAATAGCTGAAGAAGAA+TGG + chr3_3:74152651-74152670 Msa0471760:intron 35.0%
AGAATTGCTGCTGCAAAAAA+GGG + chr3_3:74152685-74152704 Msa0471760:CDS 35.0%
ACATGAATGTACAGGTACAT+TGG - chr3_3:74153092-74153111 Msa0471770:intron 35.0%
GATTTGTCTATGATGAATGC+AGG + chr3_3:74153198-74153217 Msa0471760:intron 35.0%
CAATTAACGTGCAAGTTTAC+AGG + chr3_3:74153236-74153255 Msa0471760:CDS 35.0%
TTATAAAAGAATGGACAGCC+TGG + chr3_3:74153260-74153279 Msa0471760:CDS 35.0%
TATAAAAGAATGGACAGCCT+GGG + chr3_3:74153261-74153280 Msa0471760:CDS 35.0%
AATTCAAGAAATGCACGTTG+AGG - chr3_3:74153376-74153395 Msa0471770:intron 35.0%
! TCTAATTTTTCATCGACAGC+TGG - chr3_3:74153443-74153462 Msa0471770:intron 35.0%
ATATACAGACCAAAACTGGT+TGG + chr3_3:74153671-74153690 Msa0471760:intron 35.0%
! AAATTGTTGCCAACCAGTTT+TGG - chr3_3:74153683-74153702 Msa0471770:intron 35.0%
AAAGTGCAAACACACTCAAA+AGG - chr3_3:74153747-74153766 Msa0471770:intron 35.0%
ATCACATGTAACAAATTGGC+AGG - chr3_3:74153845-74153864 Msa0471770:intron 35.0%
! CTTACTTGCTAGTCCTTAAT+GGG + chr3_3:74154099-74154118 Msa0471760:CDS 35.0%
!!! ACCTAGTTTTGACCATAATG+AGG + chr3_3:74154236-74154255 Msa0471760:three_prime_UTR 35.0%
TCCTCATTATGGTCAAAACT+AGG - chr3_3:74154240-74154259 Msa0471770:intron 35.0%
AAAACATGGTTCATGTGCAT+CGG - chr3_3:74154418-74154437 Msa0471770:intron 35.0%
ATTGAATCAGTGTGCTTTAG+TGG - chr3_3:74154445-74154464 Msa0471770:intron 35.0%
CCTTAATGAGAGGAGGAAAT+TGG - chr3_3:74150810-74150829 None:intergenic 40.0%
CCAATTTCCTCCTCTCATTA+AGG + chr3_3:74150807-74150826 Msa0471760:five_prime_UTR 40.0%
TTGAGCGTTTCCTTAATGAG+AGG - chr3_3:74150820-74150839 None:intergenic 40.0%
AGATGCTCAGAATATCCCAA+TGG + chr3_3:74151014-74151033 Msa0471760:intron 40.0%
GATGCTCAGAATATCCCAAT+GGG + chr3_3:74151015-74151034 Msa0471760:intron 40.0%
GATGAATCGCATCTGACAAA+TGG - chr3_3:74151135-74151154 None:intergenic 40.0%
! AGAACAGAAACTTGTTCAGC+TGG + chr3_3:74151219-74151238 Msa0471760:five_prime_UTR 40.0%
!! TTTTAAAGGAGGGGAGGTAA+TGG - chr3_3:74151311-74151330 None:intergenic 40.0%
ATTGAGTTCAAATCCCTTCG+AGG + chr3_3:74151704-74151723 Msa0471760:five_prime_UTR 40.0%
! ATTTTACAGCTGTCCTCGAA+GGG - chr3_3:74151720-74151739 None:intergenic 40.0%
AAATGTGCATCTGCGTATTG+TGG - chr3_3:74152223-74152242 None:intergenic 40.0%
CTGTTGTCAAGTGAGTTGTT+TGG - chr3_3:74152257-74152276 None:intergenic 40.0%
TTGATCACGTGTACCTTCTA+AGG - chr3_3:74152432-74152451 None:intergenic 40.0%
TCACAACAGAACTTTGCAAG+AGG + chr3_3:74152500-74152519 Msa0471760:CDS 40.0%
CACAACAGAACTTTGCAAGA+GGG + chr3_3:74152501-74152520 Msa0471760:CDS 40.0%
AGTAACTCAGAACAGATACC+TGG - chr3_3:74152566-74152585 None:intergenic 40.0%
GAGAATTGCTGCTGCAAAAA+AGG + chr3_3:74152684-74152703 Msa0471760:CDS 40.0%
TACATTGGAGCTGGAAAACA+AGG - chr3_3:74153077-74153096 Msa0471770:intron 40.0%
! CATTTTCTGTGTCTCTCTTG+TGG + chr3_3:74153114-74153133 Msa0471760:intron 40.0%
TTGCACGTTAATTGCATCTG+GGG - chr3_3:74153230-74153249 Msa0471770:intron 40.0%
CTTGCACGTTAATTGCATCT+GGG - chr3_3:74153231-74153250 Msa0471770:intron 40.0%
ACTTGCACGTTAATTGCATC+TGG - chr3_3:74153232-74153251 Msa0471770:intron 40.0%
!!! CGTGCTGCATTTGCATTTTT+TGG + chr3_3:74153295-74153314 Msa0471760:CDS 40.0%
!! ATAATAGTAGCTTGCTCAGC+AGG + chr3_3:74153476-74153495 Msa0471760:CDS 40.0%
TACCTAGATTGTTGACCTTG+TGG - chr3_3:74153530-74153549 Msa0471770:intron 40.0%
! ATGAAAGCATGCTCAGGAAA+GGG - chr3_3:74153575-74153594 Msa0471770:intron 40.0%
!! GGATCGGTTTGCGTAAATAA+TGG - chr3_3:74153717-74153736 Msa0471770:intron 40.0%
TGCAAACACACTCAAAAGGT+GGG - chr3_3:74153743-74153762 Msa0471770:intron 40.0%
CATGTAACAAATTGGCAGGA+TGG - chr3_3:74153841-74153860 Msa0471770:intron 40.0%
CGGCTAAAATACACAATGGA+AGG + chr3_3:74153908-74153927 Msa0471760:intron 40.0%
!! GGAAGGTGCCATTAATAACT+TGG + chr3_3:74153925-74153944 Msa0471760:intron 40.0%
TGATATAGCTGAAAGCTGCA+TGG + chr3_3:74153975-74153994 Msa0471760:intron 40.0%
! GCTTACTTGCTAGTCCTTAA+TGG + chr3_3:74154098-74154117 Msa0471760:CDS 40.0%
AGACGTTGTTGTACCCATTA+AGG - chr3_3:74154115-74154134 Msa0471770:intron 40.0%
AACAACGTCTTCCATCTAGA+AGG + chr3_3:74154125-74154144 Msa0471760:CDS 40.0%
! TAGAAGGTGGGCTTTACAAA+TGG + chr3_3:74154141-74154160 Msa0471760:CDS 40.0%
TTTCTCAGCATGCACAATGT+TGG - chr3_3:74154211-74154230 Msa0471770:intron 40.0%
TTATGGTCAAAACTAGGTCC+AGG - chr3_3:74154234-74154253 Msa0471770:intron 40.0%
GTGTATCAGCATCCTCATTA+TGG - chr3_3:74154251-74154270 Msa0471770:intron 40.0%
ATGAGGATGCTGATACACAA+AGG + chr3_3:74154253-74154272 Msa0471760:three_prime_UTR 40.0%
CTGATACACAAAGGACAGAA+TGG + chr3_3:74154262-74154281 Msa0471760:three_prime_UTR 40.0%
TTGTCTAAAGATTGCCTCCA+TGG + chr3_3:74154350-74154369 Msa0471760:three_prime_UTR 40.0%
! GATGCACATGAACCATGTTT+TGG + chr3_3:74154417-74154436 Msa0471760:three_prime_UTR 40.0%
GCTTTAGTGGTTCCAAAACA+TGG - chr3_3:74154432-74154451 Msa0471770:intron 40.0%
GAAATTGGGAAGGAAGAGCT+TGG - chr3_3:74150795-74150814 None:intergenic 45.0%
ATGAGAGGAGGAAATTGGGA+AGG - chr3_3:74150805-74150824 None:intergenic 45.0%
AGCGTTTCCTTAATGAGAGG+AGG - chr3_3:74150817-74150836 None:intergenic 45.0%
!! TATCCCAATGGGCTAAAAGC+AGG + chr3_3:74151026-74151045 Msa0471760:intron 45.0%
!! ATCCCAATGGGCTAAAAGCA+GGG + chr3_3:74151027-74151046 Msa0471760:intron 45.0%
!! ATCCCTGCTTTTAGCCCATT+GGG - chr3_3:74151032-74151051 None:intergenic 45.0%
!! AATCCCTGCTTTTAGCCCAT+TGG - chr3_3:74151033-74151052 None:intergenic 45.0%
TCAGCGACTTCTCACTTTAG+AGG - chr3_3:74151412-74151431 None:intergenic 45.0%
! CATTTTACAGCTGTCCTCGA+AGG - chr3_3:74151721-74151740 None:intergenic 45.0%
AAGTACTAGTGTCAAGGCAG+AGG + chr3_3:74152021-74152040 Msa0471760:five_prime_UTR 45.0%
AGTACTAGTGTCAAGGCAGA+GGG + chr3_3:74152022-74152041 Msa0471760:five_prime_UTR 45.0%
TACTTGGGATCAGACTACTG+CGG - chr3_3:74152280-74152299 None:intergenic 45.0%
TGAGACTGAGCTTCAAAGCA+TGG + chr3_3:74152346-74152365 Msa0471760:exon 45.0%
! TCACGTGTACCTTCTAAGGA+AGG - chr3_3:74152428-74152447 None:intergenic 45.0%
AGAACAGATACCTGGTGACT+TGG - chr3_3:74152558-74152577 None:intergenic 45.0%
! TGTGCATTCAGGAGAGTATG+CGG - chr3_3:74152738-74152757 Msa0471770:three_prime_UTR 45.0%
! GGTAAAAAGTGTGGAGCCAA+AGG + chr3_3:74152958-74152977 Msa0471760:intron 45.0%
ATGTACAGGTACATTGGAGC+TGG - chr3_3:74153086-74153105 Msa0471770:intron 45.0%
TCTCTCTTGTGGCTTCTACT+TGG + chr3_3:74153125-74153144 Msa0471760:intron 45.0%
CTCTCTTGTGGCTTCTACTT+GGG + chr3_3:74153126-74153145 Msa0471760:intron 45.0%
TGCACGTTAATTGCATCTGG+GGG - chr3_3:74153229-74153248 Msa0471770:intron 45.0%
AAATGCAAATGCAGCACGTC+TGG - chr3_3:74153293-74153312 Msa0471770:intron 45.0%
! CCTTGTGGCAGATTTTGTGT+TGG - chr3_3:74153515-74153534 Msa0471770:intron 45.0%
CCAACACAAAATCTGCCACA+AGG + chr3_3:74153512-74153531 Msa0471760:CDS 45.0%
TGCCACAAGGTCAACAATCT+AGG + chr3_3:74153525-74153544 Msa0471760:CDS 45.0%
! GATGAAAGCATGCTCAGGAA+AGG - chr3_3:74153576-74153595 Msa0471770:intron 45.0%
! ACACACTCAAAAGGTGGGTT+GGG - chr3_3:74153738-74153757 Msa0471770:intron 45.0%
AACACACTCAAAAGGTGGGT+TGG - chr3_3:74153739-74153758 Msa0471770:intron 45.0%
GTGCAAACACACTCAAAAGG+TGG - chr3_3:74153744-74153763 Msa0471770:intron 45.0%
AACGTCTTCCATCTAGAAGG+TGG + chr3_3:74154128-74154147 Msa0471760:CDS 45.0%
ACGTCTTCCATCTAGAAGGT+GGG + chr3_3:74154129-74154148 Msa0471760:CDS 45.0%
TGTAAAGCCCACCTTCTAGA+TGG - chr3_3:74154139-74154158 Msa0471770:intron 45.0%
ATTGTGCATGCTGAGAAACC+TGG + chr3_3:74154213-74154232 Msa0471760:three_prime_UTR 45.0%
ATTCCATGTTAACGCCATGG+AGG - chr3_3:74154367-74154386 Msa0471770:intron 45.0%
TCCATGGCGTTAACATGGAA+TGG + chr3_3:74154366-74154385 Msa0471760:three_prime_UTR 45.0%
ACCATTCCATGTTAACGCCA+TGG - chr3_3:74154370-74154389 Msa0471770:intron 45.0%
CTGCAGCAGAAGAATCATGC+AGG - chr3_3:74151101-74151120 None:intergenic 50.0%
! GGAGGGGAGGTAATGGTTAA+AGG - chr3_3:74151304-74151323 None:intergenic 50.0%
TAGGTTTCAGGGACTCACCA+CGG + chr3_3:74151610-74151629 Msa0471760:five_prime_UTR 50.0%
CTTGAGATGTGCCTTAACCG+TGG - chr3_3:74151630-74151649 None:intergenic 50.0%
TCCTGGGTACCTTCCTTAGA+AGG + chr3_3:74152416-74152435 Msa0471760:CDS 50.0%
!! ACCTTCTAAGGAAGGTACCC+AGG - chr3_3:74152420-74152439 None:intergenic 50.0%
!!! TGGTGACTTGGCTGGTTTTG+TGG - chr3_3:74152546-74152565 None:intergenic 50.0%
ACAAAACCAGCCAAGTCACC+AGG + chr3_3:74152545-74152564 Msa0471760:CDS 50.0%
AAGGCCAGAAGCAGAGTTCA+AGG + chr3_3:74153027-74153046 Msa0471760:CDS 50.0%
ACCTCCTTGAACTCTGCTTC+TGG - chr3_3:74153034-74153053 Msa0471770:intron 50.0%
CGTTAATTGCATCTGGGGGA+TGG - chr3_3:74153225-74153244 Msa0471770:intron 50.0%
!! ATAGTAGCTTGCTCAGCAGG+AGG + chr3_3:74153479-74153498 Msa0471760:CDS 50.0%
! AGGGAGATGAAAGCATGCTC+AGG - chr3_3:74153581-74153600 Msa0471770:intron 50.0%
TGAGCATGCTTTCATCTCCC+TGG + chr3_3:74153580-74153599 Msa0471760:intron 50.0%
!! CTCAAAAGGTGGGTTGGGAT+CGG - chr3_3:74153733-74153752 Msa0471770:intron 50.0%
ATTCACTCCTCTGCTACAGC+TGG - chr3_3:74154182-74154201 Msa0471770:intron 50.0%
TTGCCTCCATGGCGTTAACA+TGG + chr3_3:74154361-74154380 Msa0471760:three_prime_UTR 50.0%
TCAGGGACTCACCACGGTTA+AGG + chr3_3:74151616-74151635 Msa0471760:five_prime_UTR 55.0%
! CAGATACCTGGTGACTTGGC+TGG - chr3_3:74152554-74152573 None:intergenic 55.0%
ATGCGGCGCACAGATGATAG+AGG - chr3_3:74152721-74152740 Msa0471770:three_prime_UTR 55.0%
! TGAAGGCGCAGAGCTTCCTT+TGG - chr3_3:74152977-74152996 Msa0471770:intron 55.0%
GCCAGAAGCAGAGTTCAAGG+AGG + chr3_3:74153030-74153049 Msa0471760:CDS 55.0%
!!! CTGGTTTTGTGGCTGCGCTC+TGG - chr3_3:74152535-74152554 None:intergenic 60.0%
AGCACGTCTGGCAATGTCCC+AGG - chr3_3:74153281-74153300 Msa0471770:intron 60.0%
ACTCCTCTGCTACAGCTGGC+AGG - chr3_3:74154178-74154197 Msa0471770:intron 60.0%
GGACCTGCCAGCTGTAGCAG+AGG + chr3_3:74154172-74154191 Msa0471760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74150753 74154473 74150753 ID=Msa0471760;Name=Msa0471760
chr3_3 mRNA 74150753 74154473 74150753 ID=Msa0471760-mRNA-1;Parent=Msa0471760;Name=Msa0471760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1382|1|1|1|0.83|0.71|7|274|232
chr3_3 exon 74150753 74150890 74150753 ID=Msa0471760-mRNA-1:exon:18891;Parent=Msa0471760-mRNA-1
chr3_3 exon 74151121 74152566 74151121 ID=Msa0471760-mRNA-1:exon:18892;Parent=Msa0471760-mRNA-1
chr3_3 exon 74152660 74152706 74152660 ID=Msa0471760-mRNA-1:exon:18893;Parent=Msa0471760-mRNA-1
chr3_3 exon 74152959 74153051 74152959 ID=Msa0471760-mRNA-1:exon:18894;Parent=Msa0471760-mRNA-1
chr3_3 exon 74153220 74153358 74153220 ID=Msa0471760-mRNA-1:exon:18895;Parent=Msa0471760-mRNA-1
chr3_3 exon 74153444 74153546 74153444 ID=Msa0471760-mRNA-1:exon:18896;Parent=Msa0471760-mRNA-1
chr3_3 exon 74154085 74154473 74154085 ID=Msa0471760-mRNA-1:exon:18897;Parent=Msa0471760-mRNA-1
chr3_3 five_prime_UTR 74150753 74150890 74150753 ID=Msa0471760-mRNA-1:five_prime_utr;Parent=Msa0471760-mRNA-1
chr3_3 five_prime_UTR 74151121 74152364 74151121 ID=Msa0471760-mRNA-1:five_prime_utr;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74152365 74152566 74152365 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74152660 74152706 74152660 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74152959 74153051 74152959 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74153220 74153358 74153220 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74153444 74153546 74153444 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 CDS 74154085 74154199 74154085 ID=Msa0471760-mRNA-1:cds;Parent=Msa0471760-mRNA-1
chr3_3 three_prime_UTR 74154200 74154473 74154200 ID=Msa0471760-mRNA-1:three_prime_utr;Parent=Msa0471760-mRNA-1
Gene Sequence

>Msa0471760

ATGGCTTTTACATCAACTGCTCTACAATATTCATCCACATCATATTTACAATCCTGGGTACCTTCCTTAGAAGGTACACGTGATCAAAATTCATGGTGCGTCAGAGTGAGATCATACAAACCCAATTCTCAAAAATCACAACAGAACTTTGCAAGAGGGATTACAATCCAGAGCGCAGCCACAAAACCAGCCAAGTCACCAGCTGAAGAAGAATGGAAAGTTAAGCGAGAATTGCTGCTGCAAAAAAGGGTAAAAAGTGTGGAGCCAAAGGAAGCTCTGCGCCTTCAGAAAGAAAATAATTTTGTGATTCTTGATGTAAGGCCAGAAGCAGAGTTCAAGGAGGGCCATCCCCCAGATGCAATTAACGTGCAAGTTTACAGGCTTATAAAAGAATGGACAGCCTGGGACATTGCCAGACGTGCTGCATTTGCATTTTTTGGTATTTTCTCTGGCACAGAAGAAAATCCCGAGTTTATCAAGTCTGTCGATGAAAAATTAGATAAAAATGCAAAGATAATAGTAGCTTGCTCAGCAGGAGGAACAATGAAACCAACACAAAATCTGCCACAAGGTCAACAATCTAGGTCTCTAATAGCAGCTTACTTGCTAGTCCTTAATGGGTACAACAACGTCTTCCATCTAGAAGGTGGGCTTTACAAATGGTTTAAAGAGGACCTGCCAGCTGTAGCAGAGGAGTGA

Protein sequence

>Msa0471760

MAFTSTALQYSSTSYLQSWVPSLEGTRDQNSWCVRVRSYKPNSQKSQQNFARGITIQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVDEKLDKNAKIIVACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE*